AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1042400


Find 342 sgRNAs with CRISPR-Local

Find 1160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr7_1 gene 80370686 80388870 80370686 ID=Msa1042400;Name=Msa1042400
chr7_1 mRNA 80370686 80388870 80370686 ID=Msa1042400-mRNA-1;Parent=Msa1042400;Name=Msa1042400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=256|1|1|1|1|1|21|331|1447
chr7_1 exon 80370686 80371274 80370686 ID=Msa1042400-mRNA-1:exon:21846;Parent=Msa1042400-mRNA-1
chr7_1 exon 80372683 80372838 80372683 ID=Msa1042400-mRNA-1:exon:21847;Parent=Msa1042400-mRNA-1
chr7_1 exon 80372941 80373003 80372941 ID=Msa1042400-mRNA-1:exon:21848;Parent=Msa1042400-mRNA-1
chr7_1 exon 80373688 80373756 80373688 ID=Msa1042400-mRNA-1:exon:21849;Parent=Msa1042400-mRNA-1
chr7_1 exon 80373932 80374097 80373932 ID=Msa1042400-mRNA-1:exon:21850;Parent=Msa1042400-mRNA-1
chr7_1 exon 80374871 80375032 80374871 ID=Msa1042400-mRNA-1:exon:21851;Parent=Msa1042400-mRNA-1
chr7_1 exon 80376230 80376327 80376230 ID=Msa1042400-mRNA-1:exon:21852;Parent=Msa1042400-mRNA-1
chr7_1 exon 80376630 80376704 80376630 ID=Msa1042400-mRNA-1:exon:21853;Parent=Msa1042400-mRNA-1
chr7_1 exon 80376782 80376850 80376782 ID=Msa1042400-mRNA-1:exon:21854;Parent=Msa1042400-mRNA-1
chr7_1 exon 80376936 80377021 80376936 ID=Msa1042400-mRNA-1:exon:21855;Parent=Msa1042400-mRNA-1
chr7_1 exon 80377092 80377209 80377092 ID=Msa1042400-mRNA-1:exon:21856;Parent=Msa1042400-mRNA-1
chr7_1 exon 80378075 80378173 80378075 ID=Msa1042400-mRNA-1:exon:21857;Parent=Msa1042400-mRNA-1
chr7_1 exon 80378256 80378613 80378256 ID=Msa1042400-mRNA-1:exon:21858;Parent=Msa1042400-mRNA-1
chr7_1 exon 80378761 80380568 80378761 ID=Msa1042400-mRNA-1:exon:21859;Parent=Msa1042400-mRNA-1
chr7_1 exon 80381228 80381329 80381228 ID=Msa1042400-mRNA-1:exon:21860;Parent=Msa1042400-mRNA-1
chr7_1 exon 80384053 80384157 80384053 ID=Msa1042400-mRNA-1:exon:21861;Parent=Msa1042400-mRNA-1
chr7_1 exon 80384326 80384400 80384326 ID=Msa1042400-mRNA-1:exon:21862;Parent=Msa1042400-mRNA-1
chr7_1 exon 80384485 80384553 80384485 ID=Msa1042400-mRNA-1:exon:21863;Parent=Msa1042400-mRNA-1
chr7_1 exon 80384672 80384740 80384672 ID=Msa1042400-mRNA-1:exon:21864;Parent=Msa1042400-mRNA-1
chr7_1 exon 80386028 80386129 80386028 ID=Msa1042400-mRNA-1:exon:21865;Parent=Msa1042400-mRNA-1
chr7_1 exon 80388378 80388870 80388378 ID=Msa1042400-mRNA-1:exon:21866;Parent=Msa1042400-mRNA-1
chr7_1 five_prime_UTR 80370686 80370941 80370686 ID=Msa1042400-mRNA-1:five_prime_utr;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80370942 80371274 80370942 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80372683 80372838 80372683 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80372941 80373003 80372941 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80373688 80373756 80373688 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80373932 80374097 80373932 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80374871 80375032 80374871 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80376230 80376327 80376230 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80376630 80376704 80376630 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80376782 80376850 80376782 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80376936 80377021 80376936 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80377092 80377209 80377092 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80378075 80378173 80378075 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80378256 80378613 80378256 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80378761 80380568 80378761 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80381228 80381329 80381228 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80384053 80384157 80384053 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80384326 80384400 80384326 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80384485 80384553 80384485 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80384672 80384740 80384672 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80386028 80386129 80386028 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 CDS 80388378 80388539 80388378 ID=Msa1042400-mRNA-1:cds;Parent=Msa1042400-mRNA-1
chr7_1 three_prime_UTR 80388540 80388870 80388540 ID=Msa1042400-mRNA-1:three_prime_utr;Parent=Msa1042400-mRNA-1
Gene Sequence

>Msa1042400

ATGGAGGAAGCGTTGGAACTCACACGCGCCAAAGACACAAAGGAAAGGATGGCTGGTGTGGAGCGTCTCTACCATCTTCTAGAAGCTTCTAGAAAGAGTCTTTCATCTTCTGAAGTTACTTCGCTTGTTGATTCTTGCATCGATCTCTTGAAGGATAACAATTTCCGTGTCTCTCAAGGTGCACTTCAGTCTCTCGCTTCCGCCGCTGTTCTCTCCGGCGAGCATTTCAAACTTCACTTCAACGCTCTTCTTCCCGCCGTCGTTGATCGTCTCGGTGATGCTAAACAGCCTGTTCGTGACGCCGCGCGACGACTACTTCTAACGCTGATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGATCCTCAGCTTGGGCGCACAAAAGCTGGAGAGTCAGAGAGGAGTTTACGCGAACTGTAACATCTGCAATTAATCTATTTTCATCTACCGAACTTCCACTTCAACGGGCTATCCTTCCTCCTGTTTTGCAGTTGCTAAGTGACCCAAATCTTTCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAAATGTATACACAAGCCGGACCTCAATTTCGTGATGAACTTCACCGCTACAATCTTCCTTCATCTATGGTGAAAGATATTAATGCCAGGCTAGAAGGGATTCAACCAAAAGTTCGCTCTTCAGATGGTATTCCAAGTGGTTATATTACCGGGGAAATTAAGACTTCAAATGTTAACGCCAAGAAAAGTAGTCCAAAGGCCAAAAGTTCTTCAAGGGAGGCCTCTCTTTTTGGAGCAGAAGGTGATGTCACGGAGAAACCTGTAGACCCTATCAAGATATACTCCGATAAGGAGTTAGTCAGGGAAATCGAGAAGATTGCATCTATCCTTGTGCCTGAAAAAGACTGGTCCGTTCGTATTGCTGCTATGCAGAGAATTGAAGGTCTTGTTCTAGGAGGCGCTGCTGATTATCCATGTTTTCGTGGACTCCTGAAGCAACTTGGCGGACCTTTAAGCACACAATTGTCAGACAGAAGATCTAGCATCGTAAAGCAGGCTTGCCATTTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAAGCATATGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCTGATTGTGCTAAAAATGACCGGAATGCAGTGCTTCGTGCAAGGTGTTGTGAGTATGCTCTTTTGGTCCTAGAACATTGGCCAGATGCACCAGAAATACATCGTTCGGCTGAGTTATATGAGGATATGATAAAGTGTTGCGTTTCAGATGCAATGAGCGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTCGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGTTATCCAACGGTTAATAAATGAAGAGGATGGAGGAATACACAGGCGACATGCTTCACCTTCCATTCGTGATAGAGGTGCACTGACGTCGTTACCCAGTCAAGCCTCTGCTTCGTCTAATCCACCTGGTTATGGAACATCTGCAATTGTTGCAATGGATAGAAGTTCAAGTTTATCGTCGGGGACATCTGTCTCCTCTGGTGTACTTCTTTCACAGGCAAAGTCACTTGGTAAGGGTACAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGAGGCTTGAATATGTCTGATAAGCATAATGGATCATCTCTCCGGTCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCGTCTCGTGATCCGCCTTTTCCAGCTGCTGCCTCTGCATCCCATCATTTGACAAGCTCTTCAACAACAGAGCCTACTGCTTATGGTGTCTATAAAGGTAGTAACCGAAATGGTGGTCTGGGCTTGTCCGACATAATCACTCAAATTCAAGCTACCAAAGATTCTGCCAAGTCATCATATCATAGTAATGTTGAAATTGAGCCTTTACCATCCTCATATTCAACTAGAAGGGCTTCTGAAAGATTACAAGAAAGGAGTTCTGCTGATGACAATAGTGACATCAGGGAGGCTAGGCGATTTATAAACCACAACACTGATAAGCAGTATCTGGATGCCCCTTATAGAGAAGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTTCAGAGGCCACTAGTGAGAAAGAATGCAACTGGACGTATGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAACCAGCTATCTCTTGGAGAAATGTCAAGTTATTCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGGTCAGGTTCTGACTGGTCTTCCAGGGTTGCTGCCTTTAACTATCTTCACTCGTTGTTGCAGCAAGGTCCAAAGGGAACTCTAGAAGTTGTTCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCTCACCATAAAGTTGCACAGGCTGCTCTTTCAACACTAGCAGATATAGTTCCAGCATGTCGAAAGCCTTTTGAGGGATACATGGAAAGAATATTACCACACGTCTTTTCCCGGTTAATTGATCCTAAAGAGGTTGTTAGGCAGCCATGTTCAACAACATTGGGAGTTGTTAGCAAAACGTACAGTGTCGATTCTCTCTTACCTGCACTGTTACGTTCACTAGATGAACAAAGGTCTCCAAAGGCTAAATTGGCCGTGATTGAATTTGCAATCAATTCCTTTAACAAACATGCAATGAATGCAGAAGGTGCTGCTAATATTGGCATATTAAAATTGTGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAGAATACGAAGCTTAAAGAAGCAGCTATTACATGCATTATTTCAGTGTATAATCACTTTGATTCGACCGCAGTTCTTAATTTCATTCTGAGTTTGTCAGTGGAAGAGCAAAATTCTCTGAGACGAGCCCTAAAACAGTACACCCCTCGCATTGAAGTAGACCTAGTAAACTATCTACAGAACAAGAAAGAGCGGCAACGTTCCAAGTCTTCCTATGATCCATCTGATGTTGTAGGAACGTCATCTGAAGATGGGTATGTTGGTTTCTCTAGGAAAGCTCATTACCTTGGAAGATATTCGGCTGGTTCCCTAGATAGTGATGGTGGCAGGAAGTGGAGCTCTCAGGATTCAACTCTTTTGAAATCGAGTCTTGGTCCAGCAGCTTCTGTTGAATGTGAGGATCATAATCATAGTCATAACCATAATCTTGAGACTGACTCTAATTGTGACAGTCCTGGTTCAAAACCCAAAGATCTTGCATATTCAGTCAATCCAATGGGTCAAAATTTTGGCTCTCAATCTAGCCAACTTGGACAAGTGGACAGTAGCATGAATTTCGAGGGTCTTTCAACTCCTCGTTTAGATGTTAACGGTCTGATCTCATTAGAGCGTTTAAATGTTGGTGAAGGCTATGCACTTGACAAAGAACTTCCTTCTGCATTGGAACTTAATCACCACTCAACTGAAGCTGTAAAGATCAATTCCATGGCAGACACTGGGCCCAGCATTCCTCAAATTCTTCATATGATATGCAATGCTGATGACGGTAGCCCTGTTTCAAGTAAACAGACTGCACTTCAACAGTTATTTGAAGCTTCTACAACAAATGACCAGTCTGTTTGGACCAAGTACTTCAATCAGATTTTGACGGTTGTGCTTGAGGTGCTGGATGATTCCGATTCCTCTGTCAGAGAGCTCACTCTTTCGTTGATAGTTGAAATGCTCAAAAACCAGAAAGATGCCCTGGAGAATTCAGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATATCGTTCCTAAGGTTTCAAATGAAGCAGAGCATTGCCTGACCATTGTTTTATCTCAGTCTGATCCATTCAGATGTTTGAGTGTTATTGTCCCTCTACTGGTTACCGATGATGAGAAAACACTTGTCACTTGCATTAATTGCTTAACAAAGCTTGTGGGCAGGCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCGTTTCTACCTTCTCTTTTTGAAGCTTTTGGAAACCAGAGTGCAGATGTTCGCAAGACCGTTGTTTTCTGTCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACAATTTATGCGAATCGAATCTCACAAGCCAGGACAGGCAAAGCAATTGATACCGTTCATGATTAG

Protein sequence

>Msa1042400

MEEALELTRAKDTKERMAGVERLYHLLEASRKSLSSSEVTSLVDSCIDLLKDNNFRVSQGALQSLASAAVLSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSSAWAHKSWRVREEFTRTVTSAINLFSSTELPLQRAILPPVLQLLSDPNLSVREAAILCIEEMYTQAGPQFRDELHRYNLPSSMVKDINARLEGIQPKVRSSDGIPSGYITGEIKTSNVNAKKSSPKAKSSSREASLFGAEGDVTEKPVDPIKIYSDKELVREIEKIASILVPEKDWSVRIAAMQRIEGLVLGGAADYPCFRGLLKQLGGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEAYAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSAELYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALTSLPSQASASSNPPGYGTSAIVAMDRSSSLSSGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLNMSDKHNGSSLRSSSLDLEVDPPSSRDPPFPAAASASHHLTSSSTTEPTAYGVYKGSNRNGGLGLSDIITQIQATKDSAKSSYHSNVEIEPLPSSYSTRRASERLQERSSADDNSDIREARRFINHNTDKQYLDAPYREGNFRESHNSYVPNFQRPLVRKNATGRMSAGRRRSFDDNQLSLGEMSSYSDGPASLHEALSEGLRSGSDWSSRVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERILPHVFSRLIDPKEVVRQPCSTTLGVVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNAEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYNHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLVNYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGFSRKAHYLGRYSAGSLDSDGGRKWSSQDSTLLKSSLGPAASVECEDHNHSHNHNLETDSNCDSPGSKPKDLAYSVNPMGQNFGSQSSQLGQVDSSMNFEGLSTPRLDVNGLISLERLNVGEGYALDKELPSALELNHHSTEAVKINSMADTGPSIPQILHMICNADDGSPVSSKQTALQQLFEASTTNDQSVWTKYFNQILTVVLEVLDDSDSSVRELTLSLIVEMLKNQKDALENSVEIVIEKLLHVTKDIVPKVSNEAEHCLTIVLSQSDPFRCLSVIVPLLVTDDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPSLFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDTVHD*