AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0440750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440750 MtrunA17_Chr3g0078341 94.195 534 18 3 1 525 1 530 0.0 993
Msa0440750 MtrunA17_Chr6g0475211 88.577 534 52 1 1 525 1 534 0.0 912
Msa0440750 MtrunA17_Chr6g0482641 56.597 288 90 6 108 394 29 282 3.44e-102 309
Msa0440750 MtrunA17_Chr6g0450581 36.957 322 153 8 208 522 29 307 8.83e-55 186
Msa0440750 MtrunA17_Chr1g0149901 47.980 198 86 4 323 516 20 204 1.06e-49 170
Msa0440750 MtrunA17_Chr1g0149891 47.980 198 86 4 323 516 147 331 9.68e-49 171
Msa0440750 MtrunA17_Chr6g0476071 46.296 216 68 7 232 443 3 174 1.18e-46 160
Msa0440750 MtrunA17_Chr1g0159581 41.546 207 86 6 325 522 25 205 4.13e-39 141
Msa0440750 MtrunA17_Chr6g0476081 75.325 77 18 1 443 519 11 86 7.57e-33 120
Msa0440750 MtrunA17_Chr1g0149081 45.833 120 62 1 326 445 22 138 2.97e-26 103
Msa0440750 MtrunA17_Chr7g0223571 60.227 88 28 2 444 525 1 87 5.85e-25 99.4
Msa0440750 MtrunA17_Chr1g0149091 60.000 75 27 1 445 516 23 97 2.26e-24 97.4
Msa0440750 MtrunA17_Chr6g0450541 51.765 85 38 1 441 522 5 89 1.18e-22 92.4
Msa0440750 MtrunA17_Chr6g0482631 49.573 117 14 3 444 517 1 115 2.14e-21 89.7
Msa0440750 MtrunA17_Chr6g0450531 35.135 111 56 3 312 419 19 116 2.74e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0440750 AT5G51740.1 60.000 400 151 6 130 525 48 442 3.19e-174 499
Msa0440750 AT5G51740.2 60.000 400 151 6 130 525 91 485 1.57e-173 498
Msa0440750 AT5G51740.3 55.975 318 133 4 129 443 90 403 1.84e-127 378

Find 179 sgRNAs with CRISPR-Local

Find 523 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATCTGGGTATTTGAATT+TGG 0.114800 3_3:-8482217 Msa0440750:CDS
GTGAAAATAATAAGAATATT+AGG 0.145873 3_3:-8482122 Msa0440750:CDS
ATGAGATTCTTGATGATAAA+TGG 0.146030 3_3:-8481435 Msa0440750:CDS
TGGATTGAATTGGGAGATTT+TGG 0.167567 3_3:-8481350 Msa0440750:CDS
TCTCAAGGTTGTAACTTTAA+TGG 0.172006 3_3:-8482093 Msa0440750:CDS
GGCAACAGATCCAGTTAATT+TGG 0.179739 3_3:+8477755 None:intergenic
TTTCTAAGATATTAGATAAA+AGG 0.183661 3_3:-8482050 Msa0440750:CDS
CACATTAAAGCTAGCATCTT+TGG 0.187610 3_3:+8482191 None:intergenic
GCTGAAGCTGACAGATAATT+TGG 0.192402 3_3:-8477618 Msa0440750:three_prime_UTR
AACAAAAGTGCTAACTTTAA+TGG 0.199037 3_3:-8482285 Msa0440750:CDS
AAATTGATTCATCTTGTTAT+TGG 0.204174 3_3:+8482704 None:intergenic
ATCCTCACTCTTACACTTTC+AGG 0.212835 3_3:+8481631 None:intergenic
CAATCTGGGTATTTGAATTT+GGG 0.238019 3_3:-8482216 Msa0440750:CDS
CGCTTGACCTTGTCAATATT+CGG 0.240283 3_3:-8482975 Msa0440750:five_prime_UTR
AATTGATTCATCTTGTTATT+GGG 0.268742 3_3:+8482705 None:intergenic
GGATTCTGAAACCAATTCTT+TGG 0.281604 3_3:+8481850 None:intergenic
GCAGAGATAGCAACTATTAT+TGG 0.282923 3_3:-8481238 Msa0440750:CDS
CTCAAGGTTGTAACTTTAAT+GGG 0.283856 3_3:-8482092 Msa0440750:CDS
TTTGAGATTAATAAGAATAT+TGG 0.285361 3_3:-8482024 Msa0440750:CDS
GGTTCAGAAGAGTAGGAAAA+AGG 0.286020 3_3:-8481413 Msa0440750:CDS
CCATCCAAATGTGACGTATT+AGG 0.286467 3_3:+8481370 None:intergenic
CTGCATGTTTCCAAATTAAC+TGG 0.288993 3_3:-8477765 Msa0440750:three_prime_UTR
ATCTTCTTCTCCATCTCTTT+CGG 0.290022 3_3:+8481718 None:intergenic
ATTATCTTATGCTTTGTTGC+AGG 0.291814 3_3:-8482946 Msa0440750:five_prime_UTR
TGTATTGGCAGGAGTAAAAT+TGG 0.293932 3_3:-8482841 Msa0440750:five_prime_UTR
GCAATCTGGGTATTTGAATC+TGG 0.296972 3_3:-8482310 Msa0440750:CDS
AGATGAATAGTGGGAGAAAA+TGG 0.297872 3_3:+8482511 None:intergenic
CACATTTGGATGGATTGAAT+TGG 0.299543 3_3:-8481360 Msa0440750:CDS
AAATGTGTTCTCTTCGTATA+AGG 0.304300 3_3:+8481751 None:intergenic
ACAAAAGTGCTAACTTTAAT+GGG 0.313258 3_3:-8482284 Msa0440750:CDS
CCCAACTTCTCGTAGACTTT+AGG 0.315746 3_3:+8478040 None:intergenic
GTAAAGGTGTTAGCTTTAAT+AGG 0.316218 3_3:-8481993 Msa0440750:CDS
TGGGAAGATAGTTGTGTTTA+CGG 0.319349 3_3:-8481287 Msa0440750:CDS
AACCAATTCTTTGGCCCTCT+TGG 0.319495 3_3:+8481859 None:intergenic
TGGTGTTGAAGGATTTCTTT+AGG 0.322830 3_3:-8477882 Msa0440750:exon
ATACTCTCACAAAACAATTA+TGG 0.329234 3_3:+8477855 None:intergenic
ACACTTTCAGGGTGCATTGC+AGG 0.341748 3_3:+8481643 None:intergenic
TTGAGATTAATAAGAATATT+GGG 0.342471 3_3:-8482023 Msa0440750:CDS
GTTGCCTGAGATTTAGAGTA+TGG 0.343246 3_3:-8477738 Msa0440750:three_prime_UTR
TGAAAATAATAAGAATATTA+GGG 0.346615 3_3:-8482121 Msa0440750:CDS
GATTGCAACGTTCTGTTACT+AGG 0.353680 3_3:+8482327 None:intergenic
ATTTCAAGAGATTAGACAAC+AGG 0.356427 3_3:-8481951 Msa0440750:CDS
TCTTCAATTTCTAAGAGATT+AGG 0.358074 3_3:-8482156 Msa0440750:CDS
ATGATGAGATTGAAGGAAAT+AGG 0.358466 3_3:+8482755 None:intergenic
ATTGGTATAGTGGTTGGTTC+TGG 0.359308 3_3:-8481814 Msa0440750:CDS
GATTGCAAAATTCTGTTACT+AGG 0.362105 3_3:+8482234 None:intergenic
TACTGTGTTTGGTGAAGAAA+AGG 0.364696 3_3:-8481524 Msa0440750:CDS
AGCCAAGAGGGCCAAAGAAT+TGG 0.368828 3_3:-8481861 Msa0440750:CDS
AGTAACAGAACGTTGCAATC+TGG 0.371103 3_3:-8482324 Msa0440750:CDS
AAGAAAACGAGCAGAATTAC+TGG 0.372401 3_3:-8477963 Msa0440750:CDS
TTGAGAAAACAAGACGCATT+TGG 0.375417 3_3:-8483736 Msa0440750:five_prime_UTR
AAGAGATGGAGAAGAAGATT+GGG 0.386070 3_3:-8481714 Msa0440750:CDS
CATCCCCTCAGCACTGTGTC+TGG 0.390785 3_3:+8480846 None:intergenic
GAGGGAAAGTTGAAGGGAAT+TGG 0.391132 3_3:-8481468 Msa0440750:CDS
TTTGATCTTCCTATCCTTGT+CGG 0.394467 3_3:+8482809 None:intergenic
TTCTAAGATATTAGATAAAA+GGG 0.399166 3_3:-8482049 Msa0440750:CDS
CTATGTCATCACTTCTCTTA+CGG 0.399194 3_3:-8480753 Msa0440750:CDS
GCTTCAGAAAATACTGTGTT+TGG 0.401820 3_3:-8481535 Msa0440750:CDS
GGGAAGATAGTTGTGTTTAC+GGG 0.403532 3_3:-8481286 Msa0440750:CDS
GACATAGTGTTGACAATATC+AGG 0.403878 3_3:+8480769 None:intergenic
GGAAATTTGTGGGTATGCTT+TGG 0.404922 3_3:+8482471 None:intergenic
TTTGAAGAGAGGGTTGAGTA+AGG 0.405119 3_3:-8481584 Msa0440750:CDS
AGAGGAAAGCTTGTTCTTGA+TGG 0.407337 3_3:-8482372 Msa0440750:CDS
TTTCCGGGTTCTTTCAATCA+TGG 0.410122 3_3:-8482406 Msa0440750:exon
ACATTTGGATGGATTGAATT+GGG 0.413686 3_3:-8481359 Msa0440750:CDS
ATTAATAAGAATATTGGGTT+GGG 0.417432 3_3:-8482018 Msa0440750:CDS
ACTAGTATTCTACCATGAAA+TGG 0.417978 3_3:+8482902 None:intergenic
GAGTTTGAGAAGATGAAGGC+AGG 0.420112 3_3:-8481685 Msa0440750:CDS
CATGAAAGGAAGATGAATAG+TGG 0.421194 3_3:+8482501 None:intergenic
AAAGAGATGGAGAAGAAGAT+TGG 0.422292 3_3:-8481715 Msa0440750:CDS
AGAGAAGGACATGGTGTTGA+AGG 0.427494 3_3:-8477893 Msa0440750:CDS
AGAATTGGTTTCAGAATCCT+AGG 0.434255 3_3:-8481846 Msa0440750:CDS
GCAACCTAATACGTCACATT+TGG 0.438474 3_3:-8481374 Msa0440750:CDS
TGAGATTCTTGATGATAAAT+GGG 0.439908 3_3:-8481434 Msa0440750:CDS
GTAACAGAACGTTGCAATCT+GGG 0.441464 3_3:-8482323 Msa0440750:CDS
CATGGTAGAATACTAGTCAT+TGG 0.441869 3_3:-8482896 Msa0440750:five_prime_UTR
TTTGATAATTCTGTATTGGC+AGG 0.442673 3_3:-8482852 Msa0440750:five_prime_UTR
AGAGGATTGGTCTGGTGATA+AGG 0.452530 3_3:+8483709 None:intergenic
GCATGTTATGATTGGTATAG+TGG 0.453566 3_3:-8481824 Msa0440750:CDS
CGTTCTGAAATTTATGAATG+AGG 0.454988 3_3:+8485442 None:intergenic
CAATCTGGGTATTTGAATCT+GGG 0.456335 3_3:-8482309 Msa0440750:CDS
AATATTGGGTTGGGTTGTAA+AGG 0.464328 3_3:-8482009 Msa0440750:CDS
ACCTAAAGTCTACGAGAAGT+TGG 0.465177 3_3:-8478041 Msa0440750:CDS
CGTCGCGTAGTTGCCAGATC+TGG 0.466088 3_3:+8483763 None:intergenic
TTGTTGAAGCTTTGAAGAGA+GGG 0.466119 3_3:-8481594 Msa0440750:CDS
GTTTGAAGAGTGAAGAAGTT+CGG 0.469586 3_3:+8485365 None:intergenic
AATCCTAGGCATGTTATGAT+TGG 0.472024 3_3:-8481832 Msa0440750:CDS
AACGAAGAACGAAACGAAGA+AGG 0.472297 3_3:+8485389 None:intergenic
ACTGTGTTTGGTGAAGAAAA+GGG 0.472337 3_3:-8481523 Msa0440750:CDS
ATCTAAAAGCTTAGAATCGC+CGG 0.472748 3_3:+8478009 None:intergenic
TGAATTTAATTACTATGCAC+TGG 0.475022 3_3:-8477580 Msa0440750:three_prime_UTR
AGAATTACTGGCTCAAGCTC+AGG 0.477979 3_3:-8477951 Msa0440750:CDS
TTTGATGAGTGGAAATTTGT+GGG 0.491964 3_3:+8482461 None:intergenic
TGCAGAAGAAGCAATGGATT+AGG 0.492005 3_3:-8477675 Msa0440750:three_prime_UTR
TCCTCACTCTTACACTTTCA+GGG 0.494164 3_3:+8481632 None:intergenic
GTTCTGAAATTTATGAATGA+GGG 0.497020 3_3:+8485443 None:intergenic
GATTAATAAGAATATTGGGT+TGG 0.498993 3_3:-8482019 Msa0440750:CDS
GAAAGTGGAGGGAAAGTTGA+AGG 0.499097 3_3:-8481475 Msa0440750:CDS
TAATCAAAGCCGACAAGGAT+AGG 0.503785 3_3:-8482818 Msa0440750:five_prime_UTR
AATATTAGGGTTGGTTCTCA+AGG 0.503963 3_3:-8482108 Msa0440750:CDS
CCTAATACGTCACATTTGGA+TGG 0.504235 3_3:-8481370 Msa0440750:CDS
GGATGTAGAAAGAGTGTTCA+CGG 0.507138 3_3:+8482536 None:intergenic
AATGATTACCTTCTGGAGAA+AGG 0.507195 3_3:+8480727 None:intergenic
ATTAGTGCATTGACTGAAAG+TGG 0.507872 3_3:-8481490 Msa0440750:CDS
GTTATGATTGGTATAGTGGT+TGG 0.507924 3_3:-8481820 Msa0440750:CDS
CCTAAAGTCTACGAGAAGTT+GGG 0.509175 3_3:-8478040 Msa0440750:CDS
AATAATAAGAATATTAGGGT+TGG 0.510133 3_3:-8482117 Msa0440750:CDS
TCACGGGTGACGCACACACG+TGG 0.513046 3_3:+8482553 None:intergenic
GGGTTCTTTCAATCATGGCT+TGG 0.514869 3_3:-8482401 Msa0440750:exon
AGGGGATGACAAAGAATATG+TGG 0.517207 3_3:-8480831 Msa0440750:CDS
ATGAAAGGAAGATGAATAGT+GGG 0.517888 3_3:+8482502 None:intergenic
TTTGGTGGTGAATGATCCTA+TGG 0.519554 3_3:-8481332 Msa0440750:CDS
AAAATTCTTACTTGTGAAAG+GGG 0.521206 3_3:+8482606 None:intergenic
TTGCCAGATCTGGCATCAAA+AGG 0.521445 3_3:+8483773 None:intergenic
TACGGCTTCCTTTCTCCAGA+AGG 0.521905 3_3:-8480735 Msa0440750:intron
GAGAGAGTTTGAGAAGATGA+AGG 0.524062 3_3:-8481689 Msa0440750:CDS
ATAAATGGGTTCAGAAGAGT+AGG 0.531439 3_3:-8481420 Msa0440750:CDS
ACATTCCTCCTACATTGTGT+TGG 0.531709 3_3:-8477791 Msa0440750:three_prime_UTR
GCTACCATACTCTAAATCTC+AGG 0.536686 3_3:+8477734 None:intergenic
CTTCCCACCAGGTAAGCAAA+AGG 0.542507 3_3:+8481303 None:intergenic
CTGCAAGTGAATACATTGCA+TGG 0.544679 3_3:-8477645 Msa0440750:three_prime_UTR
ATTGTTGAAGCTTTGAAGAG+AGG 0.546244 3_3:-8481595 Msa0440750:CDS
AAGTTGAAGGGAATTGGCAT+CGG 0.548246 3_3:-8481462 Msa0440750:CDS
ATCAAGTGCAGAAGAAGCAA+TGG 0.548877 3_3:-8477681 Msa0440750:three_prime_UTR
AGTTGAAGGGAATTGGCATC+GGG 0.552278 3_3:-8481461 Msa0440750:CDS
CTTCTATTAGTTGCATCCGC+CGG 0.553436 3_3:-8478082 Msa0440750:CDS
ACGAAGAACGAAACGAAGAA+GGG 0.556139 3_3:+8485390 None:intergenic
AAGCAAAAGGCATTAACCAT+AGG 0.561244 3_3:+8481316 None:intergenic
AGAGATGGAGAAGAAGATTG+GGG 0.562312 3_3:-8481713 Msa0440750:CDS
CTTACCACAGAGGATTGGTC+TGG 0.562317 3_3:+8483701 None:intergenic
GCTTTGGATTGAAGCATGAA+AGG 0.564967 3_3:+8482487 None:intergenic
TGCCACACGTGGATCATAGC+CGG 0.567918 3_3:+8478063 None:intergenic
ATACCAATCATAACATGCCT+AGG 0.568681 3_3:+8481829 None:intergenic
GAAATTGAAGCTGATTACAT+TGG 0.569179 3_3:-8478106 Msa0440750:CDS
GTGGCCAGACACAGTGCTGA+GGG 0.570445 3_3:-8480850 Msa0440750:CDS
GGTTGAGTAAGGAGAATGTG+TGG 0.571308 3_3:-8481573 Msa0440750:CDS
GGGTGTGTGATTCGTGAAGA+AGG 0.573392 3_3:+8482574 None:intergenic
CTGTGTTTGGTGAAGAAAAG+GGG 0.574536 3_3:-8481522 Msa0440750:CDS
ATGGTCTTACCACAGAGGAT+TGG 0.574754 3_3:+8483696 None:intergenic
ACTGGCTCAAGCTCAGGTGA+TGG 0.577941 3_3:-8477945 Msa0440750:CDS
GATCTGGCATCAAAAGGTGA+TGG 0.585194 3_3:+8483779 None:intergenic
TCTTACTTGTGAAAGGGGAA+AGG 0.585595 3_3:+8482611 None:intergenic
TAATTTGGAAATAAGTTCCG+TGG 0.596738 3_3:+8482668 None:intergenic
AGCAACTATTATTGGACATG+AGG 0.602186 3_3:-8481230 Msa0440750:intron
GAATAGTGGGAGAAAATGGA+AGG 0.604703 3_3:+8482515 None:intergenic
AAAGTGGAGGGAAAGTTGAA+GGG 0.608573 3_3:-8481474 Msa0440750:CDS
ATCATGGCTTGGTATAGAAG+AGG 0.608651 3_3:-8482390 Msa0440750:CDS
AAGCCATGATTGAAAGAACC+CGG 0.611194 3_3:+8482403 None:intergenic
CTTATGATAGCTCAATCTCA+AGG 0.613970 3_3:+8483010 None:intergenic
GATGTAGAAAGAGTGTTCAC+GGG 0.614651 3_3:+8482537 None:intergenic
TGCAGTCTCCAACACAATGT+AGG 0.617449 3_3:+8477783 None:intergenic
AACACAACTATCTTCCCACC+AGG 0.619918 3_3:+8481292 None:intergenic
GTGCATTGACTGAAAGTGGA+GGG 0.623353 3_3:-8481486 Msa0440750:CDS
TGAGTAACAGATTTCAAGAG+TGG 0.635340 3_3:+8477712 None:intergenic
AAAATGCAATACAAAACATG+AGG 0.637874 3_3:+8482873 None:intergenic
ATATATAAGAATGTAAGAGA+AGG 0.642352 3_3:-8477908 Msa0440750:CDS
AGTCTCCAACACAATGTAGG+AGG 0.642906 3_3:+8477786 None:intergenic
AGAAGAAGCAATGGATTAGG+TGG 0.644261 3_3:-8477672 Msa0440750:three_prime_UTR
TTTCAAGAGATTAGACAACA+GGG 0.648905 3_3:-8481950 Msa0440750:CDS
GGGGATGACAAAGAATATGT+GGG 0.650366 3_3:-8480830 Msa0440750:CDS
GTTTGGTGAAGAAAAGGGGA+AGG 0.654958 3_3:-8481518 Msa0440750:CDS
TGTGGCCAGACACAGTGCTG+AGG 0.662397 3_3:-8480851 Msa0440750:CDS
TAATTAGGTTGGACATGCTG+TGG 0.665392 3_3:-8480869 Msa0440750:intron
CGCCGGCTATGATCCACGTG+TGG 0.667943 3_3:-8478065 Msa0440750:CDS
TTCAAGAGATTAGACAACAG+GGG 0.668530 3_3:-8481949 Msa0440750:CDS
ATGTGGATCCTCAAAATGTG+CGG 0.671867 3_3:-8481891 Msa0440750:CDS
ATTGGTAATCAAAGCCGACA+AGG 0.673145 3_3:-8482823 Msa0440750:five_prime_UTR
AGTGCATTGACTGAAAGTGG+AGG 0.673147 3_3:-8481487 Msa0440750:CDS
TAGACTTTAGGTGCCACACG+TGG 0.678929 3_3:+8478052 None:intergenic
CACGGGTGACGCACACACGT+GGG 0.686760 3_3:+8482554 None:intergenic
AAGAATGTAAGAGAAGGACA+TGG 0.701425 3_3:-8477902 Msa0440750:CDS
ATCACCAGACCAATCCTCTG+TGG 0.703077 3_3:-8483705 Msa0440750:intron
TGGCCAGACACAGTGCTGAG+GGG 0.712731 3_3:-8480849 Msa0440750:CDS
TGGTGATGTGAGAGATTGAG+CGG 0.713310 3_3:+8483806 None:intergenic
CATCAAAAGGTGATGGACAG+TGG 0.714241 3_3:+8483786 None:intergenic
TAGAATTCCGAATATTGACA+AGG 0.715563 3_3:+8482968 None:intergenic
CACACGTGGATCATAGCCGG+CGG 0.724278 3_3:+8478066 None:intergenic
CACAGATGGTCTTACCACAG+AGG 0.744492 3_3:+8483691 None:intergenic
ACCCTGAAAGTGTAAGAGTG+AGG 0.750161 3_3:-8481633 Msa0440750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATAATTGATTTTATTTAA+TGG - chr3_3:8478634-8478653 Msa0440750:intron 10.0%
!!! TTTTTTTAAACTAAATCATT+GGG + chr3_3:8479710-8479729 None:intergenic 10.0%
!!! TTTTTTTTAAACTAAATCAT+TGG + chr3_3:8479711-8479730 None:intergenic 10.0%
!! TGAAAATAATAAGAATATTA+GGG - chr3_3:8480861-8480880 Msa0440750:CDS 10.0%
!!! AATTTTGATTTATCATATAT+TGG - chr3_3:8483964-8483983 Msa0440750:intron 10.0%
!!! AAAATGTACAAATTTAAAAT+TGG + chr3_3:8484446-8484465 None:intergenic 10.0%
!! ATAAAAAACTAAGGTAAAAT+AGG - chr3_3:8477506-8477525 Msa0440750:three_prime_UTR 15.0%
!! TAATATAGTTCAATTTAAAG+CGG + chr3_3:8477753-8477772 None:intergenic 15.0%
!!! AAAAATGTAATTTTTTGTTG+TGG - chr3_3:8477850-8477869 Msa0440750:three_prime_UTR 15.0%
!!! AAAATGTAATTTTTTGTTGT+GGG - chr3_3:8477851-8477870 Msa0440750:three_prime_UTR 15.0%
!!! ATTGTTTTTATAAGCTATAT+TGG - chr3_3:8478218-8478237 Msa0440750:intron 15.0%
!!! TAAAATCTCTATTTATTTTC+AGG - chr3_3:8478485-8478504 Msa0440750:intron 15.0%
!! ACAAATTTAAAAGATAATGA+AGG + chr3_3:8479376-8479395 None:intergenic 15.0%
!! ATTAGGGTTATTTATTTATT+AGG - chr3_3:8479564-8479583 Msa0440750:intron 15.0%
!!! ATTTTTTATATTCCATTTCA+TGG - chr3_3:8480068-8480087 Msa0440750:intron 15.0%
!!! ATGAAAAAATTGAAATTTTG+TGG + chr3_3:8480548-8480567 None:intergenic 15.0%
!! GTGAAAATAATAAGAATATT+AGG - chr3_3:8480860-8480879 Msa0440750:CDS 15.0%
!!! TTTCTAAGATATTAGATAAA+AGG - chr3_3:8480932-8480951 Msa0440750:intron 15.0%
!!! TTCTAAGATATTAGATAAAA+GGG - chr3_3:8480933-8480952 Msa0440750:intron 15.0%
!!! TTTGAGATTAATAAGAATAT+TGG - chr3_3:8480958-8480977 Msa0440750:intron 15.0%
!! TTGAGATTAATAAGAATATT+GGG - chr3_3:8480959-8480978 Msa0440750:intron 15.0%
!!! TTTTTATAACTGTGTATTTT+GGG - chr3_3:8481193-8481212 Msa0440750:intron 15.0%
!!! ATAAATTTTACTTGAATTAG+TGG - chr3_3:8482439-8482458 Msa0440750:five_prime_UTR 15.0%
!!! TAAGATACTATTGATTAAAA+TGG - chr3_3:8483076-8483095 Msa0440750:intron 15.0%
!!! ATAACAATGATAAGTTTTTA+TGG + chr3_3:8484049-8484068 None:intergenic 15.0%
!!! ATTTTATTGAACTCATTGTT+AGG - chr3_3:8477698-8477717 Msa0440750:three_prime_UTR 20.0%
!!! TTTTATTGAACTCATTGTTA+GGG - chr3_3:8477699-8477718 Msa0440750:three_prime_UTR 20.0%
!!! AAATGTAATTTTTTGTTGTG+GGG - chr3_3:8477852-8477871 Msa0440750:three_prime_UTR 20.0%
!! CTAGAAACAAACAAAAATAA+GGG + chr3_3:8478013-8478032 None:intergenic 20.0%
!!! AATAAGTTGAAAAAAGCTTA+TGG - chr3_3:8478253-8478272 Msa0440750:intron 20.0%
!!! ATAAAAATGGTTTTAGCTTT+TGG - chr3_3:8478667-8478686 Msa0440750:intron 20.0%
!! TTCCTCCTAATTAATAAATT+GGG + chr3_3:8478807-8478826 None:intergenic 20.0%
!! TTTCCTCCTAATTAATAAAT+TGG + chr3_3:8478808-8478827 None:intergenic 20.0%
!! TTGAAAGTAGAATTCATATA+AGG + chr3_3:8479428-8479447 None:intergenic 20.0%
!! TTATATGAATTCTACTTTCA+AGG - chr3_3:8479427-8479446 Msa0440750:intron 20.0%
!! TATATGAATTCTACTTTCAA+GGG - chr3_3:8479428-8479447 Msa0440750:intron 20.0%
!! AGGTTCAAAAGTTAAAAATT+GGG + chr3_3:8479502-8479521 None:intergenic 20.0%
!! AAGGTTCAAAAGTTAAAAAT+TGG + chr3_3:8479503-8479522 None:intergenic 20.0%
!! AATCGTTTGAAAAATTCTTA+AGG + chr3_3:8479522-8479541 None:intergenic 20.0%
!! CAATATCTATTTATGCATAA+TGG + chr3_3:8479874-8479893 None:intergenic 20.0%
!!! TTTTTACCCTATTTTTTTTC+TGG + chr3_3:8479938-8479957 None:intergenic 20.0%
!!! CATTTTTGATAATTCTGTAT+TGG - chr3_3:8480126-8480145 Msa0440750:intron 20.0%
!!! AATTGATTCATCTTGTTATT+GGG + chr3_3:8480280-8480299 None:intergenic 20.0%
!!! AAATTGATTCATCTTGTTAT+TGG + chr3_3:8480281-8480300 None:intergenic 20.0%
!! AAAAATTCTTACTTGTGAAA+GGG + chr3_3:8480380-8480399 None:intergenic 20.0%
!! AAAAAATTCTTACTTGTGAA+AGG + chr3_3:8480381-8480400 None:intergenic 20.0%
!!! TTTTTCATCAATTTAGTTTC+CGG - chr3_3:8480560-8480579 Msa0440750:intron 20.0%
!! AATAATAAGAATATTAGGGT+TGG - chr3_3:8480865-8480884 Msa0440750:CDS 20.0%
!! ATTAATAAGAATATTGGGTT+GGG - chr3_3:8480964-8480983 Msa0440750:intron 20.0%
!!! TTGAAGTTAATACGAATTTT+AGG - chr3_3:8481058-8481077 Msa0440750:intron 20.0%
!!! GTTTTTATAACTGTGTATTT+TGG - chr3_3:8481192-8481211 Msa0440750:intron 20.0%
!!! TTTGATTCGTTTAACTTATT+AGG - chr3_3:8481781-8481800 Msa0440750:CDS 20.0%
!! GAACAAAACAAAAATTCAAT+TGG + chr3_3:8482301-8482320 None:intergenic 20.0%
!! AAGTGAAAAACATGAAATTA+GGG - chr3_3:8482407-8482426 Msa0440750:exon 20.0%
!!! AAAAAAAAAAGGTTGCATTT+TGG - chr3_3:8482800-8482819 Msa0440750:five_prime_UTR 20.0%
!!! ATTTTGGCCTTTTATTATTT+CGG - chr3_3:8482816-8482835 Msa0440750:five_prime_UTR 20.0%
!!! ATATATTTTCTCTTAAAGTG+TGG + chr3_3:8482993-8483012 None:intergenic 20.0%
!! TGGTATTCTTGTATAAATTA+AGG + chr3_3:8483905-8483924 None:intergenic 20.0%
!! AAATTACAATTCGTATTTAG+AGG + chr3_3:8483949-8483968 None:intergenic 20.0%
!! TATGAATACTTAAATGTTCT+TGG - chr3_3:8484342-8484361 Msa0440750:intron 20.0%
!! TAATTTACTATACACAAATG+TGG - chr3_3:8484768-8484787 Msa0440750:intron 20.0%
!! ATATATAAGAATGTAAGAGA+AGG - chr3_3:8485074-8485093 Msa0440750:intron 20.0%
!!! AGAGTATTTTGAAAAAGTTA+AGG - chr3_3:8485143-8485162 Msa0440750:intron 20.0%
!!! GTTCTGAAATTTATGAATGA+GGG + chr3_3:8477542-8477561 None:intergenic 25.0%
!! TTGTGTATTTGAAGTTGAAT+TGG - chr3_3:8477935-8477954 Msa0440750:CDS 25.0%
! GCTAGAAACAAACAAAAATA+AGG + chr3_3:8478014-8478033 None:intergenic 25.0%
! AAGCTTATGGAAAATGTTAT+TGG - chr3_3:8478266-8478285 Msa0440750:intron 25.0%
!!! TTAATGATTTGTTGGATCTA+AGG - chr3_3:8478413-8478432 Msa0440750:intron 25.0%
! TGATTGTGTTTGGTTATATA+GGG - chr3_3:8478581-8478600 Msa0440750:intron 25.0%
!! TGGTGAGTTTAAGATAAAAA+TGG - chr3_3:8478654-8478673 Msa0440750:intron 25.0%
! CAACTCCCAATTTATTAATT+AGG - chr3_3:8478799-8478818 Msa0440750:intron 25.0%
!! CTATTTTACAATACACACAA+GGG + chr3_3:8479025-8479044 None:intergenic 25.0%
! TTTAACTGATATCATAACAG+AGG - chr3_3:8479114-8479133 Msa0440750:intron 25.0%
! AAAGTAGAATTCATATAAGG+TGG + chr3_3:8479425-8479444 None:intergenic 25.0%
! GGTTCAAAAGTTAAAAATTG+GGG + chr3_3:8479501-8479520 None:intergenic 25.0%
! ATTAGGAAGATTGAGTTATT+TGG - chr3_3:8479581-8479600 Msa0440750:intron 25.0%
! GTTATTCAGGGTTATTATTT+AGG - chr3_3:8479625-8479644 Msa0440750:intron 25.0%
!!! CTTCAAATGATGTTTTTTTC+TGG + chr3_3:8479829-8479848 None:intergenic 25.0%
! ATTTATTTATTCTGTTGACC+AGG - chr3_3:8479904-8479923 Msa0440750:intron 25.0%
! AAAATGCAATACAAAACATG+AGG + chr3_3:8480112-8480131 None:intergenic 25.0%
!!! TTTTAAGATGATGAGATTGA+AGG + chr3_3:8480237-8480256 None:intergenic 25.0%
!! ATTTTTCTAATTGAGTTCCA+CGG - chr3_3:8480297-8480316 Msa0440750:intron 25.0%
!!! ATTTTCTGGTCTAAGTAATT+TGG + chr3_3:8480332-8480351 None:intergenic 25.0%
! AAAATTCTTACTTGTGAAAG+GGG + chr3_3:8480379-8480398 None:intergenic 25.0%
!!! TTTTCATCAATTTAGTTTCC+GGG - chr3_3:8480561-8480580 Msa0440750:intron 25.0%
!!! AACAAAAGTGCTAACTTTAA+TGG - chr3_3:8480697-8480716 Msa0440750:intron 25.0%
!!! ACAAAAGTGCTAACTTTAAT+GGG - chr3_3:8480698-8480717 Msa0440750:intron 25.0%
!! TCTTCAATTTCTAAGAGATT+AGG - chr3_3:8480826-8480845 Msa0440750:CDS 25.0%
! GATTAATAAGAATATTGGGT+TGG - chr3_3:8480963-8480982 Msa0440750:intron 25.0%
!!! TTTTAGGAGATTATACTATG+TGG - chr3_3:8481074-8481093 Msa0440750:intron 25.0%
!! ATGAGATTCTTGATGATAAA+TGG - chr3_3:8481547-8481566 Msa0440750:CDS 25.0%
!! TGAGATTCTTGATGATAAAT+GGG - chr3_3:8481548-8481567 Msa0440750:CDS 25.0%
!! TTTAACTTATTAGGCTTGTT+TGG - chr3_3:8481790-8481809 Msa0440750:CDS 25.0%
! AGACTGTTAAAGAGATATTA+TGG - chr3_3:8481853-8481872 Msa0440750:CDS 25.0%
!!! TTAAGCTATTTTTGCAAACA+AGG - chr3_3:8482030-8482049 Msa0440750:CDS 25.0%
!! TTTTGCAGTTTAACATGTTT+AGG - chr3_3:8482060-8482079 Msa0440750:CDS 25.0%
! AATTGGTTATAAAGAGACAA+CGG + chr3_3:8482284-8482303 None:intergenic 25.0%
! GAAGTGAAAAACATGAAATT+AGG - chr3_3:8482406-8482425 Msa0440750:exon 25.0%
! AATAGAAGAATTCATTGTGA+AGG + chr3_3:8482559-8482578 None:intergenic 25.0%
! TTCGCCAAAAGAAAAAAAAA+AGG - chr3_3:8482789-8482808 Msa0440750:five_prime_UTR 25.0%
!!! GCAACCTTTTTTTTTTCTTT+TGG + chr3_3:8482796-8482815 None:intergenic 25.0%
!!! TACTTATAACTACTTTTGTC+AGG + chr3_3:8482915-8482934 None:intergenic 25.0%
! TGACAAAAGTAGTTATAAGT+AGG - chr3_3:8482914-8482933 Msa0440750:five_prime_UTR 25.0%
! TCATTATGTGATCTTTCATA+AGG - chr3_3:8483145-8483164 Msa0440750:intron 25.0%
! CATTATGTGATCTTTCATAA+GGG - chr3_3:8483146-8483165 Msa0440750:intron 25.0%
! ATTATGTGATCTTTCATAAG+GGG - chr3_3:8483147-8483166 Msa0440750:intron 25.0%
! CTTATTTCAGTAGAAAAACT+TGG + chr3_3:8483469-8483488 None:intergenic 25.0%
! TGAATAACAAGAAACAATCA+TGG + chr3_3:8483564-8483583 None:intergenic 25.0%
! AAATGAAGTTTCTTCTTAGA+GGG + chr3_3:8483648-8483667 None:intergenic 25.0%
! TAAGAAGAAACTTCATTTGT+AGG - chr3_3:8483650-8483669 Msa0440750:intron 25.0%
! TAATTTACAAAAAAACTCGC+AGG + chr3_3:8483689-8483708 None:intergenic 25.0%
! TATGCATTGTTGTCTAATAT+CGG - chr3_3:8483709-8483728 Msa0440750:five_prime_UTR 25.0%
!!! CATATGTACATTTTTTGTGT+TGG - chr3_3:8483823-8483842 Msa0440750:five_prime_UTR 25.0%
!!! TGGTCATGGTATTTTTTTTA+TGG + chr3_3:8483925-8483944 None:intergenic 25.0%
!! ATGATAAGTTTTTATGGAGA+GGG + chr3_3:8484043-8484062 None:intergenic 25.0%
!! AATGATAAGTTTTTATGGAG+AGG + chr3_3:8484044-8484063 None:intergenic 25.0%
! ATGATAAAACCTTTCATCTA+AGG - chr3_3:8484197-8484216 Msa0440750:intron 25.0%
!! AATTTTGTTCCTTAGATGAA+AGG + chr3_3:8484209-8484228 None:intergenic 25.0%
! CATATGCAAATGAATTACAT+TGG + chr3_3:8484326-8484345 None:intergenic 25.0%
!! CATTTAAATCTGTTTCTTGT+TGG - chr3_3:8484529-8484548 Msa0440750:intron 25.0%
! AGAGATTAAAAGAAAACCTT+TGG + chr3_3:8484568-8484587 None:intergenic 25.0%
!!! CAGTAGTTTTGTTTATACTT+GGG + chr3_3:8484748-8484767 None:intergenic 25.0%
!!! ACAGTAGTTTTGTTTATACT+TGG + chr3_3:8484749-8484768 None:intergenic 25.0%
! GGAAAATTGTGGAAAAAATT+GGG + chr3_3:8484850-8484869 None:intergenic 25.0%
! TGGAAAATTGTGGAAAAAAT+TGG + chr3_3:8484851-8484870 None:intergenic 25.0%
!!! AATTTTTTCCACAATTTTCC+AGG - chr3_3:8484850-8484869 Msa0440750:intron 25.0%
! ATACTCTCACAAAACAATTA+TGG + chr3_3:8485130-8485149 None:intergenic 25.0%
! TGAATTTAATTACTATGCAC+TGG - chr3_3:8485402-8485421 Msa0440750:five_prime_UTR 25.0%
!! CGTTCTGAAATTTATGAATG+AGG + chr3_3:8477543-8477562 None:intergenic 30.0%
CAGTGTTAAAGAAAACTTAC+AGG + chr3_3:8477642-8477661 None:intergenic 30.0%
TAGAGTTAAGTTCATTGCAT+TGG - chr3_3:8477787-8477806 Msa0440750:three_prime_UTR 30.0%
CAAATACACAACATCTTCTA+TGG + chr3_3:8477926-8477945 None:intergenic 30.0%
TAAGTTCTGTGTGACTATTT+GGG + chr3_3:8478309-8478328 None:intergenic 30.0%
ATAAGTTCTGTGTGACTATT+TGG + chr3_3:8478310-8478329 None:intergenic 30.0%
GATCCTATGAATTTGATCTA+GGG + chr3_3:8478374-8478393 None:intergenic 30.0%
CTATTATCAGTGAAAAGTTG+TGG - chr3_3:8478547-8478566 Msa0440750:intron 30.0%
GTGATTGTGTTTGGTTATAT+AGG - chr3_3:8478580-8478599 Msa0440750:intron 30.0%
GATTGTGTTTGGTTATATAG+GGG - chr3_3:8478582-8478601 Msa0440750:intron 30.0%
CTCCCAATTTATTAATTAGG+AGG - chr3_3:8478802-8478821 Msa0440750:intron 30.0%
! CCTATTTTACAATACACACA+AGG + chr3_3:8479026-8479045 None:intergenic 30.0%
CCTTGTGTGTATTGTAAAAT+AGG - chr3_3:8479023-8479042 Msa0440750:intron 30.0%
GAAGAAGAAAAACGAATAGA+GGG + chr3_3:8479320-8479339 None:intergenic 30.0%
GAGAAGGAATAACATGAAAA+GGG + chr3_3:8479342-8479361 None:intergenic 30.0%
AGAGAAGGAATAACATGAAA+AGG + chr3_3:8479343-8479362 None:intergenic 30.0%
ATGTTATTCCTTCTCTCTTA+TGG - chr3_3:8479347-8479366 Msa0440750:intron 30.0%
TGTTATTCCTTCTCTCTTAT+GGG - chr3_3:8479348-8479367 Msa0440750:intron 30.0%
AATAACTCAATCTTCCTCAA+TGG + chr3_3:8479547-8479566 None:intergenic 30.0%
TTGAGGAAGATTGAGTTATT+AGG - chr3_3:8479547-8479566 Msa0440750:intron 30.0%
TGAGGAAGATTGAGTTATTA+GGG - chr3_3:8479548-8479567 Msa0440750:intron 30.0%
CTGAATAACATAGAAAAGTC+CGG + chr3_3:8479614-8479633 None:intergenic 30.0%
! GGACTTTTCTATGTTATTCA+GGG - chr3_3:8479613-8479632 Msa0440750:intron 30.0%
GCGTATCCAGAAAAAAAATA+GGG - chr3_3:8479929-8479948 Msa0440750:intron 30.0%
TAGAATTCCGAATATTGACA+AGG + chr3_3:8480017-8480036 None:intergenic 30.0%
! ATTATCTTATGCTTTGTTGC+AGG - chr3_3:8480036-8480055 Msa0440750:intron 30.0%
ACTAGTATTCTACCATGAAA+TGG + chr3_3:8480083-8480102 None:intergenic 30.0%
! TTTGATAATTCTGTATTGGC+AGG - chr3_3:8480130-8480149 Msa0440750:intron 30.0%
ATGATGAGATTGAAGGAAAT+AGG + chr3_3:8480230-8480249 None:intergenic 30.0%
TAATTTGGAAATAAGTTCCG+TGG + chr3_3:8480317-8480336 None:intergenic 30.0%
! AACAATCGAATGACATTTTC+TGG + chr3_3:8480346-8480365 None:intergenic 30.0%
ATGAAAGGAAGATGAATAGT+GGG + chr3_3:8480483-8480502 None:intergenic 30.0%
TTTGATGAGTGGAAATTTGT+GGG + chr3_3:8480524-8480543 None:intergenic 30.0%
! TTTTGATGAGTGGAAATTTG+TGG + chr3_3:8480525-8480544 None:intergenic 30.0%
!!! AATTTTGTGGTTTTGATGAG+TGG + chr3_3:8480535-8480554 None:intergenic 30.0%
CTGTTACTAGGTAGAAAAAT+TGG + chr3_3:8480646-8480665 None:intergenic 30.0%
GATTGCAAAATTCTGTTACT+AGG + chr3_3:8480751-8480770 None:intergenic 30.0%
! AGTAACAGAATTTTGCAATC+TGG - chr3_3:8480751-8480770 Msa0440750:CDS 30.0%
! GTAACAGAATTTTGCAATCT+GGG - chr3_3:8480752-8480771 Msa0440750:CDS 30.0%
CAATCTGGGTATTTGAATTT+GGG - chr3_3:8480766-8480785 Msa0440750:CDS 30.0%
TCTCAAGGTTGTAACTTTAA+TGG - chr3_3:8480889-8480908 Msa0440750:intron 30.0%
CTCAAGGTTGTAACTTTAAT+GGG - chr3_3:8480890-8480909 Msa0440750:intron 30.0%
!! GTAAAGGTGTTAGCTTTAAT+AGG - chr3_3:8480989-8481008 Msa0440750:intron 30.0%
ATTTCAAGAGATTAGACAAC+AGG - chr3_3:8481031-8481050 Msa0440750:intron 30.0%
TTTCAAGAGATTAGACAACA+GGG - chr3_3:8481032-8481051 Msa0440750:intron 30.0%
!! AACTGTGTATTTTGGGAATA+TGG - chr3_3:8481200-8481219 Msa0440750:intron 30.0%
AAATGTGTTCTCTTCGTATA+AGG + chr3_3:8481234-8481253 None:intergenic 30.0%
!! ACATTTGGATGGATTGAATT+GGG - chr3_3:8481623-8481642 Msa0440750:CDS 30.0%
CTTAAGCGCTTATATGATAT+AGG - chr3_3:8481987-8482006 Msa0440750:CDS 30.0%
GACTCATTTCATTGATACAT+AGG - chr3_3:8482334-8482353 Msa0440750:CDS 30.0%
! ATAGGTAATGTTTGTTAGAC+AGG - chr3_3:8482352-8482371 Msa0440750:CDS 30.0%
TTTGTTAGACAGGTTAGAAT+AGG - chr3_3:8482362-8482381 Msa0440750:CDS 30.0%
GCTACATGACTAAACATATA+GGG + chr3_3:8482522-8482541 None:intergenic 30.0%
TGCTACATGACTAAACATAT+AGG + chr3_3:8482523-8482542 None:intergenic 30.0%
!!! TCATGTAGCAATGTTGTTTT+TGG - chr3_3:8482533-8482552 Msa0440750:five_prime_UTR 30.0%
! TTGTGTTTGATTTCGTCTTA+TGG + chr3_3:8482586-8482605 None:intergenic 30.0%
! TTTCTCTTAAAGTGTGGTTT+TGG + chr3_3:8482987-8483006 None:intergenic 30.0%
TGAAATTGGTTGAATCACAA+TGG - chr3_3:8483051-8483070 Msa0440750:five_prime_UTR 30.0%
TCGAAATCGTAAATTGTTGT+GGG - chr3_3:8483397-8483416 Msa0440750:intron 30.0%
CAAATGAAGTTTCTTCTTAG+AGG + chr3_3:8483649-8483668 None:intergenic 30.0%
!! TCAGTGTAATGGATTAAAGA+TGG + chr3_3:8483769-8483788 None:intergenic 30.0%
TACAATTCGTATTTAGAGGT+TGG + chr3_3:8483945-8483964 None:intergenic 30.0%
AATTTGTGAGTAGGCAATTA+TGG + chr3_3:8484134-8484153 None:intergenic 30.0%
! TATGGATGTAATTTGTGAGT+AGG + chr3_3:8484143-8484162 None:intergenic 30.0%
GCAAGGAATTAATGCAAATA+TGG + chr3_3:8484161-8484180 None:intergenic 30.0%
TAATTCCTTGCTTAGTAGTA+AGG - chr3_3:8484170-8484189 Msa0440750:intron 30.0%
ATCTAAGGAACAAAATTCTG+TGG - chr3_3:8484212-8484231 Msa0440750:intron 30.0%
TCTATAATATCCTAGAGAGT+AGG + chr3_3:8484378-8484397 None:intergenic 30.0%
!! AAAATTGGCTCTAATACCAT+TGG + chr3_3:8484431-8484450 None:intergenic 30.0%
! GCTTCAATTTAACTTCTTTG+TGG - chr3_3:8484607-8484626 Msa0440750:intron 30.0%
! TGTTGGTTAGATAGTCAAAA+TGG + chr3_3:8484659-8484678 None:intergenic 30.0%
GAAATTGAAGCTGATTACAT+TGG - chr3_3:8484876-8484895 Msa0440750:intron 30.0%
GTTTGAAGAGTGAAGAAGTT+CGG + chr3_3:8477620-8477639 None:intergenic 35.0%
TGTACGTTTCTGATCATTCT+AGG - chr3_3:8477962-8477981 Msa0440750:CDS 35.0%
!! ATTCTAGGACAAATGTTTGC+TGG - chr3_3:8477977-8477996 Msa0440750:CDS 35.0%
GATAAGCTGTTTATCCAAAC+AGG + chr3_3:8478039-8478058 None:intergenic 35.0%
TAAGCGCTTATCATGATAAG+CGG + chr3_3:8478079-8478098 None:intergenic 35.0%
GCACTAGATAAGCTCAAATA+AGG - chr3_3:8478330-8478349 Msa0440750:intron 35.0%
AGACCCTAGATCAAATTCAT+AGG - chr3_3:8478368-8478387 Msa0440750:intron 35.0%
GGATCCTATGAATTTGATCT+AGG + chr3_3:8478375-8478394 None:intergenic 35.0%
TGCTGTTATGTGATTGTGTT+TGG - chr3_3:8478571-8478590 Msa0440750:intron 35.0%
TGATCATTCATCATTGCTGA+TGG + chr3_3:8478781-8478800 None:intergenic 35.0%
GAAGAAGGAGATAAGATTCT+AGG - chr3_3:8478859-8478878 Msa0440750:intron 35.0%
TTCTAGGTATAAGAATGAGC+AGG - chr3_3:8478875-8478894 Msa0440750:intron 35.0%
TCTAGGTATAAGAATGAGCA+GGG - chr3_3:8478876-8478895 Msa0440750:intron 35.0%
AAAGAAGATTCCAGATTCAG+AGG - chr3_3:8478900-8478919 Msa0440750:intron 35.0%
AAGAAGATTCCAGATTCAGA+GGG - chr3_3:8478901-8478920 Msa0440750:intron 35.0%
TATAAAGCCGAATGTGTGTA+CGG + chr3_3:8478963-8478982 None:intergenic 35.0%
AAAAACCCAAGTCAACAAGT+TGG + chr3_3:8479096-8479115 None:intergenic 35.0%
TTGAGAAAACAAGACGCATT+TGG - chr3_3:8479246-8479265 Msa0440750:intron 35.0%
GGAAGAAGAAAAACGAATAG+AGG + chr3_3:8479321-8479340 None:intergenic 35.0%
TTTCAAACGATTTGCCATTG+AGG - chr3_3:8479530-8479549 Msa0440750:intron 35.0%
! CGGACTTTTCTATGTTATTC+AGG - chr3_3:8479612-8479631 Msa0440750:intron 35.0%
AGGAAGCAACACAAAAATGA+GGG + chr3_3:8479653-8479672 None:intergenic 35.0%
TAGGAAGCAACACAAAAATG+AGG + chr3_3:8479654-8479673 None:intergenic 35.0%
!! CCTCTAAAACTTCAGTATTG+TGG + chr3_3:8479754-8479773 None:intergenic 35.0%
!! CCACAATACTGAAGTTTTAG+AGG - chr3_3:8479751-8479770 Msa0440750:intron 35.0%
TAGCTGATGCATGACATATA+TGG + chr3_3:8479799-8479818 None:intergenic 35.0%
TATTTATTCTGTTGACCAGG+CGG - chr3_3:8479907-8479926 Msa0440750:intron 35.0%
GGCGTATCCAGAAAAAAAAT+AGG - chr3_3:8479928-8479947 Msa0440750:intron 35.0%
CTTATGATAGCTCAATCTCA+AGG + chr3_3:8479975-8479994 None:intergenic 35.0%
CATGGTAGAATACTAGTCAT+TGG - chr3_3:8480086-8480105 Msa0440750:intron 35.0%
! TGTATTGGCAGGAGTAAAAT+TGG - chr3_3:8480141-8480160 Msa0440750:intron 35.0%
TTTGATCTTCCTATCCTTGT+CGG + chr3_3:8480176-8480195 None:intergenic 35.0%
! AGATGAATAGTGGGAGAAAA+TGG + chr3_3:8480474-8480493 None:intergenic 35.0%
CATGAAAGGAAGATGAATAG+TGG + chr3_3:8480484-8480503 None:intergenic 35.0%
CAATCTGGGTATTTGAATCT+GGG - chr3_3:8480673-8480692 Msa0440750:intron 35.0%
GCAATCTGGGTATTTGAATT+TGG - chr3_3:8480765-8480784 Msa0440750:CDS 35.0%
CACATTAAAGCTAGCATCTT+TGG + chr3_3:8480794-8480813 None:intergenic 35.0%
!! AATATTAGGGTTGGTTCTCA+AGG - chr3_3:8480874-8480893 Msa0440750:intron 35.0%
!! AATATTGGGTTGGGTTGTAA+AGG - chr3_3:8480973-8480992 Msa0440750:intron 35.0%
TTCAAGAGATTAGACAACAG+GGG - chr3_3:8481033-8481052 Msa0440750:intron 35.0%
! TTAAAATGCCGCACATTTTG+AGG + chr3_3:8481102-8481121 None:intergenic 35.0%
!! GGATTCTGAAACCAATTCTT+TGG + chr3_3:8481135-8481154 None:intergenic 35.0%
! AGAATTGGTTTCAGAATCCT+AGG - chr3_3:8481136-8481155 Msa0440750:intron 35.0%
AATCCTAGGCATGTTATGAT+TGG - chr3_3:8481150-8481169 Msa0440750:intron 35.0%
ATACCAATCATAACATGCCT+AGG + chr3_3:8481156-8481175 None:intergenic 35.0%
GCATGTTATGATTGGTATAG+TGG - chr3_3:8481158-8481177 Msa0440750:intron 35.0%
GTTATGATTGGTATAGTGGT+TGG - chr3_3:8481162-8481181 Msa0440750:intron 35.0%
!!! GATTTTGATTCCGAAAGAGA+TGG - chr3_3:8481254-8481273 Msa0440750:CDS 35.0%
ATCTTCTTCTCCATCTCTTT+CGG + chr3_3:8481267-8481286 None:intergenic 35.0%
AAAGAGATGGAGAAGAAGAT+TGG - chr3_3:8481267-8481286 Msa0440750:CDS 35.0%
AAGAGATGGAGAAGAAGATT+GGG - chr3_3:8481268-8481287 Msa0440750:CDS 35.0%
!! AAGATGAAGGCAGGTTTTAA+GGG - chr3_3:8481306-8481325 Msa0440750:CDS 35.0%
!! ATTGTTGAAGCTTTGAAGAG+AGG - chr3_3:8481387-8481406 Msa0440750:CDS 35.0%
!! TTGTTGAAGCTTTGAAGAGA+GGG - chr3_3:8481388-8481407 Msa0440750:CDS 35.0%
GCTTCAGAAAATACTGTGTT+TGG - chr3_3:8481447-8481466 Msa0440750:CDS 35.0%
! TACTGTGTTTGGTGAAGAAA+AGG - chr3_3:8481458-8481477 Msa0440750:CDS 35.0%
! ACTGTGTTTGGTGAAGAAAA+GGG - chr3_3:8481459-8481478 Msa0440750:CDS 35.0%
!! ATTAGTGCATTGACTGAAAG+TGG - chr3_3:8481492-8481511 Msa0440750:CDS 35.0%
! ATAAATGGGTTCAGAAGAGT+AGG - chr3_3:8481562-8481581 Msa0440750:CDS 35.0%
GTTCAGAAGAGTAGGAAAAA+GGG - chr3_3:8481570-8481589 Msa0440750:CDS 35.0%
!! CACATTTGGATGGATTGAAT+TGG - chr3_3:8481622-8481641 Msa0440750:CDS 35.0%
! TGGATTGAATTGGGAGATTT+TGG - chr3_3:8481632-8481651 Msa0440750:CDS 35.0%
! ATTGAATTGGGAGATTTTGG+TGG - chr3_3:8481635-8481654 Msa0440750:CDS 35.0%
!! AAGCAAAAGGCATTAACCAT+AGG + chr3_3:8481669-8481688 None:intergenic 35.0%
TGGGAAGATAGTTGTGTTTA+CGG - chr3_3:8481695-8481714 Msa0440750:CDS 35.0%
GCAGAGATAGCAACTATTAT+TGG - chr3_3:8481744-8481763 Msa0440750:CDS 35.0%
AGCAACTATTATTGGACATG+AGG - chr3_3:8481752-8481771 Msa0440750:CDS 35.0%
!! GACATAGTGTTGACAATATC+AGG + chr3_3:8482216-8482235 None:intergenic 35.0%
CTATGTCATCACTTCTCTTA+CGG - chr3_3:8482229-8482248 Msa0440750:CDS 35.0%
! AATGATTACCTTCTGGAGAA+AGG + chr3_3:8482258-8482277 None:intergenic 35.0%
ACTTGAATTAGTGGAACTAG+AGG - chr3_3:8482448-8482467 Msa0440750:five_prime_UTR 35.0%
TTAACTCAGCCGTACAAAAT+CGG + chr3_3:8482963-8482982 None:intergenic 35.0%
GCTTTCAAAGTTGAAGTGTA+CGG - chr3_3:8483027-8483046 Msa0440750:five_prime_UTR 35.0%
TTGAAGTGTACGGTTGAAAT+TGG - chr3_3:8483037-8483056 Msa0440750:five_prime_UTR 35.0%
TGAAGACTGATCGATAAAAC+AGG - chr3_3:8483118-8483137 Msa0440750:intron 35.0%
GAAGACTGATCGATAAAACA+GGG - chr3_3:8483119-8483138 Msa0440750:intron 35.0%
AAACACAAACGCAAACTAGA+CGG - chr3_3:8483259-8483278 Msa0440750:intron 35.0%
GTCGAAATCGTAAATTGTTG+TGG - chr3_3:8483396-8483415 Msa0440750:intron 35.0%
! TGGGATCGTAACATAGATTT+TGG - chr3_3:8483416-8483435 Msa0440750:intron 35.0%
CATGTGTCTCAGCTTAAAAA+GGG + chr3_3:8483611-8483630 None:intergenic 35.0%
!! CTTTTTAAGCTGAGACACAT+GGG - chr3_3:8483610-8483629 Msa0440750:intron 35.0%
AGAAAGCCAAAATATTGCCA+TGG + chr3_3:8483735-8483754 None:intergenic 35.0%
!!! AATATTTTGGCTTTCTGCCA+TGG - chr3_3:8483739-8483758 Msa0440750:five_prime_UTR 35.0%
GGATTAAAGATGGAAAACCA+TGG + chr3_3:8483759-8483778 None:intergenic 35.0%
! AGTGCTGAAAGAGAAATGTT+CGG + chr3_3:8483852-8483871 None:intergenic 35.0%
AACATTTCTCTTTCAGCACT+TGG - chr3_3:8483852-8483871 Msa0440750:intron 35.0%
GTAAAGCAGTGTAACTCAAA+GGG + chr3_3:8484076-8484095 None:intergenic 35.0%
TACTGCAGAATTTATGCATC+AGG + chr3_3:8484098-8484117 None:intergenic 35.0%
TGATACCTTACTACTAAGCA+AGG + chr3_3:8484178-8484197 None:intergenic 35.0%
TACACAAATGTGGTGAATGA+TGG - chr3_3:8484778-8484797 Msa0440750:intron 35.0%
! TTTTCCACAATTTTCCAGGA+TGG - chr3_3:8484854-8484873 Msa0440750:intron 35.0%
ATTTCCATCCTGGAAAATTG+TGG + chr3_3:8484861-8484880 None:intergenic 35.0%
GAGAAGTTGGGAAAAATATC+CGG - chr3_3:8484954-8484973 Msa0440750:intron 35.0%
ATCTAAAAGCTTAGAATCGC+CGG + chr3_3:8484976-8484995 None:intergenic 35.0%
AAGAAAACGAGCAGAATTAC+TGG - chr3_3:8485019-8485038 Msa0440750:intron 35.0%
AAGAATGTAAGAGAAGGACA+TGG - chr3_3:8485080-8485099 Msa0440750:intron 35.0%
! TGGTGTTGAAGGATTTCTTT+AGG - chr3_3:8485100-8485119 Msa0440750:intron 35.0%
CTGCATGTTTCCAAATTAAC+TGG - chr3_3:8485217-8485236 Msa0440750:intron 35.0%
TGAGTAACAGATTTCAAGAG+TGG + chr3_3:8485273-8485292 None:intergenic 35.0%
ACGAAGAACGAAACGAAGAA+GGG + chr3_3:8477595-8477614 None:intergenic 40.0%
AACGAAGAACGAAACGAAGA+AGG + chr3_3:8477596-8477615 None:intergenic 40.0%
!! TTTGTTTCTAGCTGCCTGTT+TGG - chr3_3:8478022-8478041 Msa0440750:CDS 40.0%
TTGCTCGAAAAATAGCCTGT+CGG + chr3_3:8478158-8478177 None:intergenic 40.0%
! ATTTGATCTAGGGTCTGTGT+TGG + chr3_3:8478364-8478383 None:intergenic 40.0%
TCATTAAGTCCCGCTCTATT+TGG + chr3_3:8478400-8478419 None:intergenic 40.0%
! AGCGGGACTTAATGATTTGT+TGG - chr3_3:8478405-8478424 Msa0440750:intron 40.0%
TACACTCTCTACGTTGTAGT+TGG + chr3_3:8478836-8478855 None:intergenic 40.0%
! AACTACAACGTAGAGAGTGT+AGG - chr3_3:8478835-8478854 Msa0440750:intron 40.0%
! ACTACAACGTAGAGAGTGTA+GGG - chr3_3:8478836-8478855 Msa0440750:intron 40.0%
CTAGGTATAAGAATGAGCAG+GGG - chr3_3:8478877-8478896 Msa0440750:intron 40.0%
ACTTCTTCCGTACACACATT+CGG - chr3_3:8478953-8478972 Msa0440750:intron 40.0%
!! ACAGTACCAACTTGTTGACT+TGG - chr3_3:8479087-8479106 Msa0440750:intron 40.0%
!! CAGTACCAACTTGTTGACTT+GGG - chr3_3:8479088-8479107 Msa0440750:intron 40.0%
TGAGTTATTTGGATGTGCAC+CGG - chr3_3:8479592-8479611 Msa0440750:intron 40.0%
GCTTCCTATGCATGACTAAA+TGG - chr3_3:8479666-8479685 Msa0440750:intron 40.0%
CGCTTGACCTTGTCAATATT+CGG - chr3_3:8480007-8480026 Msa0440750:intron 40.0%
! ATTGGTAATCAAAGCCGACA+AGG - chr3_3:8480159-8480178 Msa0440750:intron 40.0%
TAATCAAAGCCGACAAGGAT+AGG - chr3_3:8480164-8480183 Msa0440750:intron 40.0%
TCTTACTTGTGAAAGGGGAA+AGG + chr3_3:8480374-8480393 None:intergenic 40.0%
!! GATGTAGAAAGAGTGTTCAC+GGG + chr3_3:8480448-8480467 None:intergenic 40.0%
!! GGATGTAGAAAGAGTGTTCA+CGG + chr3_3:8480449-8480468 None:intergenic 40.0%
! GAATAGTGGGAGAAAATGGA+AGG + chr3_3:8480470-8480489 None:intergenic 40.0%
! GCTTTGGATTGAAGCATGAA+AGG + chr3_3:8480498-8480517 None:intergenic 40.0%
GGAAATTTGTGGGTATGCTT+TGG + chr3_3:8480514-8480533 None:intergenic 40.0%
TTTCCGGGTTCTTTCAATCA+TGG - chr3_3:8480576-8480595 Msa0440750:intron 40.0%
AAGCCATGATTGAAAGAACC+CGG + chr3_3:8480582-8480601 None:intergenic 40.0%
!! ATCATGGCTTGGTATAGAAG+AGG - chr3_3:8480592-8480611 Msa0440750:intron 40.0%
! AGAGGAAAGCTTGTTCTTGA+TGG - chr3_3:8480610-8480629 Msa0440750:intron 40.0%
GATTGCAACGTTCTGTTACT+AGG + chr3_3:8480658-8480677 None:intergenic 40.0%
AGTAACAGAACGTTGCAATC+TGG - chr3_3:8480658-8480677 Msa0440750:intron 40.0%
GTAACAGAACGTTGCAATCT+GGG - chr3_3:8480659-8480678 Msa0440750:intron 40.0%
GCAATCTGGGTATTTGAATC+TGG - chr3_3:8480672-8480691 Msa0440750:intron 40.0%
ATGTGGATCCTCAAAATGTG+CGG - chr3_3:8481091-8481110 Msa0440750:intron 40.0%
! ATTGGTATAGTGGTTGGTTC+TGG - chr3_3:8481168-8481187 Msa0440750:intron 40.0%
AGAGATGGAGAAGAAGATTG+GGG - chr3_3:8481269-8481288 Msa0440750:CDS 40.0%
GAGAGAGTTTGAGAAGATGA+AGG - chr3_3:8481293-8481312 Msa0440750:CDS 40.0%
! GAAGATGAAGGCAGGTTTTA+AGG - chr3_3:8481305-8481324 Msa0440750:CDS 40.0%
!!! AGATGAAGGCAGGTTTTAAG+GGG - chr3_3:8481307-8481326 Msa0440750:CDS 40.0%
TCCTCACTCTTACACTTTCA+GGG + chr3_3:8481353-8481372 None:intergenic 40.0%
ATCCTCACTCTTACACTTTC+AGG + chr3_3:8481354-8481373 None:intergenic 40.0%
TTTGAAGAGAGGGTTGAGTA+AGG - chr3_3:8481398-8481417 Msa0440750:CDS 40.0%
! CTGTGTTTGGTGAAGAAAAG+GGG - chr3_3:8481460-8481479 Msa0440750:CDS 40.0%
AAAGTGGAGGGAAAGTTGAA+GGG - chr3_3:8481508-8481527 Msa0440750:CDS 40.0%
AAGTTGAAGGGAATTGGCAT+CGG - chr3_3:8481520-8481539 Msa0440750:CDS 40.0%
GGTTCAGAAGAGTAGGAAAA+AGG - chr3_3:8481569-8481588 Msa0440750:CDS 40.0%
GCAACCTAATACGTCACATT+TGG - chr3_3:8481608-8481627 Msa0440750:CDS 40.0%
CCATCCAAATGTGACGTATT+AGG + chr3_3:8481615-8481634 None:intergenic 40.0%
CCTAATACGTCACATTTGGA+TGG - chr3_3:8481612-8481631 Msa0440750:CDS 40.0%
!! TTTGGTGGTGAATGATCCTA+TGG - chr3_3:8481650-8481669 Msa0440750:CDS 40.0%
! GTTAATGCCTTTTGCTTACC+TGG - chr3_3:8481672-8481691 Msa0440750:CDS 40.0%
GGGAAGATAGTTGTGTTTAC+GGG - chr3_3:8481696-8481715 Msa0440750:CDS 40.0%
TCCAACCTAATTACCAAGCA+GGG + chr3_3:8482106-8482125 None:intergenic 40.0%
!! TAATTAGGTTGGACATGCTG+TGG - chr3_3:8482113-8482132 Msa0440750:CDS 40.0%
AGGGGATGACAAAGAATATG+TGG - chr3_3:8482151-8482170 Msa0440750:CDS 40.0%
GGGGATGACAAAGAATATGT+GGG - chr3_3:8482152-8482171 Msa0440750:CDS 40.0%
TGGTTATAAAGAGACAACGG+AGG + chr3_3:8482281-8482300 None:intergenic 40.0%
! GTTTGATTTCGTCTTATGGC+AGG + chr3_3:8482582-8482601 None:intergenic 40.0%
!! ACTTGTTTTCTGCACATCCT+CGG - chr3_3:8482715-8482734 Msa0440750:five_prime_UTR 40.0%
AGTCATACCAAGTCCATACA+AGG + chr3_3:8482744-8482763 None:intergenic 40.0%
CGTGAGGCCGAAATAATAAA+AGG + chr3_3:8482826-8482845 None:intergenic 40.0%
TAACTCAGCCGTACAAAATC+GGG + chr3_3:8482962-8482981 None:intergenic 40.0%
! GGTTGTTGAAGATGCTACTT+TGG + chr3_3:8483448-8483467 None:intergenic 40.0%
AGAAACAATCATGGCTAGCA+GGG + chr3_3:8483555-8483574 None:intergenic 40.0%
AAGAAACAATCATGGCTAGC+AGG + chr3_3:8483556-8483575 None:intergenic 40.0%
CCATGTGTCTCAGCTTAAAA+AGG + chr3_3:8483612-8483631 None:intergenic 40.0%
!! CCTTTTTAAGCTGAGACACA+TGG - chr3_3:8483609-8483628 Msa0440750:intron 40.0%
ACAAAAAAACTCGCAGGCAT+GGG + chr3_3:8483683-8483702 None:intergenic 40.0%
TACAAAAAAACTCGCAGGCA+TGG + chr3_3:8483684-8483703 None:intergenic 40.0%
TTGTTGTCTAATATCGGCCA+TGG - chr3_3:8483715-8483734 Msa0440750:five_prime_UTR 40.0%
! TATCGGCCATGGCAATATTT+TGG - chr3_3:8483726-8483745 Msa0440750:five_prime_UTR 40.0%
TGCTTGTAGAGTCAGTGTAA+TGG + chr3_3:8483780-8483799 None:intergenic 40.0%
! TCGTATTTAGAGGTTGGTCA+TGG + chr3_3:8483939-8483958 None:intergenic 40.0%
GGTAAAGCAGTGTAACTCAA+AGG + chr3_3:8484077-8484096 None:intergenic 40.0%
AGTTATGATGCCTACTCTCT+AGG - chr3_3:8484365-8484384 Msa0440750:intron 40.0%
GTATGTTAGCGTAGTTCCAA+TGG - chr3_3:8484412-8484431 Msa0440750:intron 40.0%
GACCACAATGAGTCTGATTT+CGG - chr3_3:8484468-8484487 Msa0440750:intron 40.0%
! ATCTGTTTCTTGTTGGACTG+TGG - chr3_3:8484536-8484555 Msa0440750:intron 40.0%
TGCTTAAAAGTAGCCATGTC+AGG + chr3_3:8484685-8484704 None:intergenic 40.0%
ATCAGCTTCAATTTCCATCC+TGG + chr3_3:8484871-8484890 None:intergenic 40.0%
ACCTAAAGTCTACGAGAAGT+TGG - chr3_3:8484941-8484960 Msa0440750:intron 40.0%
CCTAAAGTCTACGAGAAGTT+GGG - chr3_3:8484942-8484961 Msa0440750:intron 40.0%
! TATTTTGCCACTCATCCATC+TGG - chr3_3:8484996-8485015 Msa0440750:intron 40.0%
! TTTTCTTCCAGATGGATGAG+TGG + chr3_3:8485006-8485025 None:intergenic 40.0%
ACATTCCTCCTACATTGTGT+TGG - chr3_3:8485191-8485210 Msa0440750:intron 40.0%
GGCAACAGATCCAGTTAATT+TGG + chr3_3:8485230-8485249 None:intergenic 40.0%
! GTTGCCTGAGATTTAGAGTA+TGG - chr3_3:8485244-8485263 Msa0440750:intron 40.0%
GCTACCATACTCTAAATCTC+AGG + chr3_3:8485251-8485270 None:intergenic 40.0%
ATCAAGTGCAGAAGAAGCAA+TGG - chr3_3:8485301-8485320 Msa0440750:intron 40.0%
! TGCAGAAGAAGCAATGGATT+AGG - chr3_3:8485307-8485326 Msa0440750:intron 40.0%
!! AGAAGAAGCAATGGATTAGG+TGG - chr3_3:8485310-8485329 Msa0440750:intron 40.0%
CTGCAAGTGAATACATTGCA+TGG - chr3_3:8485337-8485356 Msa0440750:intron 40.0%
GCTGAAGCTGACAGATAATT+TGG - chr3_3:8485364-8485383 Msa0440750:five_prime_UTR 40.0%
TGCTCGAAAAATAGCCTGTC+GGG + chr3_3:8478157-8478176 None:intergenic 45.0%
TAGGATCCCACCAAATAGAG+CGG - chr3_3:8478387-8478406 Msa0440750:intron 45.0%
TAAGTCCCGCTCTATTTGGT+GGG + chr3_3:8478396-8478415 None:intergenic 45.0%
TTAAGTCCCGCTCTATTTGG+TGG + chr3_3:8478397-8478416 None:intergenic 45.0%
! CTACAACGTAGAGAGTGTAG+GGG - chr3_3:8478837-8478856 Msa0440750:intron 45.0%
AAGATTCCAGATTCAGAGGG+AGG - chr3_3:8478904-8478923 Msa0440750:intron 45.0%
AAGTGTGTGGAATGTGTGTG+AGG + chr3_3:8478937-8478956 None:intergenic 45.0%
! TGGTGATGTGAGAGATTGAG+CGG + chr3_3:8479179-8479198 None:intergenic 45.0%
!! CATCAAAAGGTGATGGACAG+TGG + chr3_3:8479199-8479218 None:intergenic 45.0%
GATCTGGCATCAAAAGGTGA+TGG + chr3_3:8479206-8479225 None:intergenic 45.0%
! TCACCTTTTGATGCCAGATC+TGG - chr3_3:8479206-8479225 Msa0440750:intron 45.0%
TTGCCAGATCTGGCATCAAA+AGG + chr3_3:8479212-8479231 None:intergenic 45.0%
!! AGAGGATTGGTCTGGTGATA+AGG + chr3_3:8479276-8479295 None:intergenic 45.0%
! ATGGTCTTACCACAGAGGAT+TGG + chr3_3:8479289-8479308 None:intergenic 45.0%
GAAGGAACCCATAAGAGAGA+AGG + chr3_3:8479358-8479377 None:intergenic 45.0%
GGGTTCTTTCAATCATGGCT+TGG - chr3_3:8480581-8480600 Msa0440750:intron 45.0%
! TGCGGCATTTTAAGCCAAGA+GGG - chr3_3:8481109-8481128 Msa0440750:intron 45.0%
AACCAATTCTTTGGCCCTCT+TGG + chr3_3:8481126-8481145 None:intergenic 45.0%
GAGTTTGAGAAGATGAAGGC+AGG - chr3_3:8481297-8481316 Msa0440750:CDS 45.0%
! ACCCTGAAAGTGTAAGAGTG+AGG - chr3_3:8481349-8481368 Msa0440750:CDS 45.0%
GGTTGAGTAAGGAGAATGTG+TGG - chr3_3:8481409-8481428 Msa0440750:CDS 45.0%
! GTTTGGTGAAGAAAAGGGGA+AGG - chr3_3:8481464-8481483 Msa0440750:CDS 45.0%
!! AGTGCATTGACTGAAAGTGG+AGG - chr3_3:8481495-8481514 Msa0440750:CDS 45.0%
!! GTGCATTGACTGAAAGTGGA+GGG - chr3_3:8481496-8481515 Msa0440750:CDS 45.0%
GAAAGTGGAGGGAAAGTTGA+AGG - chr3_3:8481507-8481526 Msa0440750:CDS 45.0%
GAGGGAAAGTTGAAGGGAAT+TGG - chr3_3:8481514-8481533 Msa0440750:CDS 45.0%
AGTTGAAGGGAATTGGCATC+GGG - chr3_3:8481521-8481540 Msa0440750:CDS 45.0%
GAAGAGTAGGAAAAAGGGTC+AGG - chr3_3:8481575-8481594 Msa0440750:CDS 45.0%
! AATGCCTTTTGCTTACCTGG+TGG - chr3_3:8481675-8481694 Msa0440750:CDS 45.0%
! ATGCCTTTTGCTTACCTGGT+GGG - chr3_3:8481676-8481695 Msa0440750:CDS 45.0%
AACACAACTATCTTCCCACC+AGG + chr3_3:8481693-8481712 None:intergenic 45.0%
! CACTTCCCTGCTTGGTAATT+AGG - chr3_3:8482098-8482117 Msa0440750:CDS 45.0%
! TCCCTGCTTGGTAATTAGGT+TGG - chr3_3:8482102-8482121 Msa0440750:CDS 45.0%
GTCCAACCTAATTACCAAGC+AGG + chr3_3:8482107-8482126 None:intergenic 45.0%
ACGGAGGAATGATTACCTTC+TGG + chr3_3:8482265-8482284 None:intergenic 45.0%
! CTCTCGAGTCAACTCGTTTT+GGG + chr3_3:8482692-8482711 None:intergenic 45.0%
! CCGTACAAAATCGGGTTGTA+CGG + chr3_3:8482954-8482973 None:intergenic 45.0%
! CCGTACAACCCGATTTTGTA+CGG - chr3_3:8482951-8482970 Msa0440750:five_prime_UTR 45.0%
AGCAGGGAGATCATAAAGGT+CGG + chr3_3:8483510-8483529 None:intergenic 45.0%
!! TAAAGATCGATGGGCTAGCA+GGG + chr3_3:8483526-8483545 None:intergenic 45.0%
!! ATAAAGATCGATGGGCTAGC+AGG + chr3_3:8483527-8483546 None:intergenic 45.0%
GGGACGTCATAAAGATCGAT+GGG + chr3_3:8483535-8483554 None:intergenic 45.0%
AGGGACGTCATAAAGATCGA+TGG + chr3_3:8483536-8483555 None:intergenic 45.0%
! GAAGCATTCGTTAGCCCAAA+TGG - chr3_3:8483996-8484015 Msa0440750:intron 45.0%
! CGTGCTTGGTTATGCCATTT+GGG + chr3_3:8484013-8484032 None:intergenic 45.0%
CTCCGAAATCAGACTCATTG+TGG + chr3_3:8484473-8484492 None:intergenic 45.0%
!! TGGACTGTGGATTAGTCCAA+AGG - chr3_3:8484549-8484568 Msa0440750:intron 45.0%
CTAACCAACATGTCCTGACA+TGG - chr3_3:8484669-8484688 Msa0440750:intron 45.0%
CTTCTATTAGTTGCATCCGC+CGG - chr3_3:8484900-8484919 Msa0440750:intron 45.0%
CCCAACTTCTCGTAGACTTT+AGG + chr3_3:8484945-8484964 None:intergenic 45.0%
! TCTGCTCGTTTTCTTCCAGA+TGG + chr3_3:8485014-8485033 None:intergenic 45.0%
!! AGAATTACTGGCTCAAGCTC+AGG - chr3_3:8485031-8485050 Msa0440750:intron 45.0%
! AGAGAAGGACATGGTGTTGA+AGG - chr3_3:8485089-8485108 Msa0440750:intron 45.0%
AGTCTCCAACACAATGTAGG+AGG + chr3_3:8485199-8485218 None:intergenic 45.0%
TGCAGTCTCCAACACAATGT+AGG + chr3_3:8485202-8485221 None:intergenic 45.0%
!! TTAAAAAAAAAAAAAAAAAG+TGG - chr3_3:8479721-8479740 Msa0440750:intron 5.0%
GAAAAATAGCCTGTCGGGCT+TGG + chr3_3:8478152-8478171 None:intergenic 50.0%
AGGATCCCACCAAATAGAGC+GGG - chr3_3:8478388-8478407 Msa0440750:intron 50.0%
! GTAGAGAGTGTAGGGGAAGA+AGG - chr3_3:8478844-8478863 Msa0440750:intron 50.0%
ATTCCAGATTCAGAGGGAGG+AGG - chr3_3:8478907-8478926 Msa0440750:intron 50.0%
AAACCTCCTCCCTCTGAATC+TGG + chr3_3:8478913-8478932 None:intergenic 50.0%
! GTGTGTACGGAAGAAGTGTG+TGG + chr3_3:8478950-8478969 None:intergenic 50.0%
CAATACACACAAGGGCAGTG+AGG + chr3_3:8479017-8479036 None:intergenic 50.0%
ATCACCAGACCAATCCTCTG+TGG - chr3_3:8479277-8479296 Msa0440750:intron 50.0%
!! CTTACCACAGAGGATTGGTC+TGG + chr3_3:8479284-8479303 None:intergenic 50.0%
! CACAGATGGTCTTACCACAG+AGG + chr3_3:8479294-8479313 None:intergenic 50.0%
CGAATAGAGGGAGTCACAGA+TGG + chr3_3:8479308-8479327 None:intergenic 50.0%
GGCGCCATTTAGTCATGCAT+AGG + chr3_3:8479673-8479692 None:intergenic 50.0%
!!! TTTTTTCTGGATACGCCGCC+TGG + chr3_3:8479925-8479944 None:intergenic 50.0%
GGGTGTGTGATTCGTGAAGA+AGG + chr3_3:8480411-8480430 None:intergenic 50.0%
! GTGCGGCATTTTAAGCCAAG+AGG - chr3_3:8481108-8481127 Msa0440750:intron 50.0%
AGCCAAGAGGGCCAAAGAAT+TGG - chr3_3:8481121-8481140 Msa0440750:intron 50.0%
ACACTTTCAGGGTGCATTGC+AGG + chr3_3:8481342-8481361 None:intergenic 50.0%
CTTCCCACCAGGTAAGCAAA+AGG + chr3_3:8481682-8481701 None:intergenic 50.0%
!! CAGTCTCAGAAGTGCTTAGC+AGG + chr3_3:8481839-8481858 None:intergenic 50.0%
CAGTCTAACACTTCCCTGCT+TGG - chr3_3:8482090-8482109 Msa0440750:CDS 50.0%
TACGGCTTCCTTTCTCCAGA+AGG - chr3_3:8482247-8482266 Msa0440750:CDS 50.0%
! GGAGGTCAGAGGTGTAAACA+CGG + chr3_3:8482671-8482690 None:intergenic 50.0%
!!! AACTCGTTTTGGGAGGTCAG+AGG + chr3_3:8482682-8482701 None:intergenic 50.0%
!! TCGAGTCAACTCGTTTTGGG+AGG + chr3_3:8482689-8482708 None:intergenic 50.0%
! GCTCTCGAGTCAACTCGTTT+TGG + chr3_3:8482693-8482712 None:intergenic 50.0%
ACATCCTCGGATGCCTTGTA+TGG - chr3_3:8482728-8482747 Msa0440750:five_prime_UTR 50.0%
! AAGTCCATACAAGGCATCCG+AGG + chr3_3:8482735-8482754 None:intergenic 50.0%
TCGGATGCCTTGTATGGACT+TGG - chr3_3:8482734-8482753 Msa0440750:five_prime_UTR 50.0%
! GGATAGACATCTAGAGCGTG+AGG + chr3_3:8482842-8482861 None:intergenic 50.0%
! CGCTCTAGATGTCTATCCCT+TGG - chr3_3:8482844-8482863 Msa0440750:five_prime_UTR 50.0%
TCTATCCCTTGGCGTGAGAA+TGG - chr3_3:8482855-8482874 Msa0440750:five_prime_UTR 50.0%
CTATCCCTTGGCGTGAGAAT+GGG - chr3_3:8482856-8482875 Msa0440750:five_prime_UTR 50.0%
TATCCCTTGGCGTGAGAATG+GGG - chr3_3:8482857-8482876 Msa0440750:five_prime_UTR 50.0%
GTGGTAATAGTCCCCACGTT+GGG - chr3_3:8482879-8482898 Msa0440750:five_prime_UTR 50.0%
TCCCCACGTTGGGTGAAATA+TGG - chr3_3:8482889-8482908 Msa0440750:five_prime_UTR 50.0%
GCCATATTTCACCCAACGTG+GGG + chr3_3:8482893-8482912 None:intergenic 50.0%
GGCCATATTTCACCCAACGT+GGG + chr3_3:8482894-8482913 None:intergenic 50.0%
AGGCCATATTTCACCCAACG+TGG + chr3_3:8482895-8482914 None:intergenic 50.0%
AGGGAGATCATAAAGGTCGG+TGG + chr3_3:8483507-8483526 None:intergenic 50.0%
GGCTAGCAGGGAGATCATAA+AGG + chr3_3:8483514-8483533 None:intergenic 50.0%
CGCTGTGACTTATACTGTCG+AGG + chr3_3:8483588-8483607 None:intergenic 50.0%
GCGTGCTTGGTTATGCCATT+TGG + chr3_3:8484014-8484033 None:intergenic 50.0%
GTAGCCATGTCAGGACATGT+TGG + chr3_3:8484676-8484695 None:intergenic 50.0%
! TAGACTTTAGGTGCCACACG+TGG + chr3_3:8484933-8484952 None:intergenic 50.0%
TTCCCTTGCCCCTGCTATAG+CGG - chr3_3:8478695-8478714 Msa0440750:intron 55.0%
TACACCCTCCCGCTATAGCA+GGG + chr3_3:8478707-8478726 None:intergenic 55.0%
TTACACCCTCCCGCTATAGC+AGG + chr3_3:8478708-8478727 None:intergenic 55.0%
CATTGGGCACGACATGAACG+AGG + chr3_3:8479694-8479713 None:intergenic 55.0%
AGGAAAAAGGGTCAGGAGCG+AGG - chr3_3:8481582-8481601 Msa0440750:CDS 55.0%
GGAAAAAGGGTCAGGAGCGA+GGG - chr3_3:8481583-8481602 Msa0440750:CDS 55.0%
GGTGGTAATAGTCCCCACGT+TGG - chr3_3:8482878-8482897 Msa0440750:five_prime_UTR 55.0%
TGCCACACGTGGATCATAGC+CGG + chr3_3:8484922-8484941 None:intergenic 55.0%
! ACTGGCTCAAGCTCAGGTGA+TGG - chr3_3:8485037-8485056 Msa0440750:intron 55.0%
ACAACCAAGCCAAGCCCGAC+AGG - chr3_3:8478140-8478159 Msa0440750:intron 60.0%
ATAGCCTGTCGGGCTTGGCT+TGG + chr3_3:8478147-8478166 None:intergenic 60.0%
TCCCTTGCCCCTGCTATAGC+GGG - chr3_3:8478696-8478715 Msa0440750:intron 60.0%
TCCCGCTATAGCAGGGGCAA+GGG + chr3_3:8478700-8478719 None:intergenic 60.0%
! TTGCCCCTGCTATAGCGGGA+GGG - chr3_3:8478700-8478719 Msa0440750:intron 60.0%
ACACCCTCCCGCTATAGCAG+GGG + chr3_3:8478706-8478725 None:intergenic 60.0%
CACACAAGGGCAGTGAGGAG+AGG + chr3_3:8479012-8479031 None:intergenic 60.0%
CGTCGCGTAGTTGCCAGATC+TGG + chr3_3:8479222-8479241 None:intergenic 60.0%
TGTGGCCAGACACAGTGCTG+AGG - chr3_3:8482131-8482150 Msa0440750:CDS 60.0%
! GTGGCCAGACACAGTGCTGA+GGG - chr3_3:8482132-8482151 Msa0440750:CDS 60.0%
! TGGCCAGACACAGTGCTGAG+GGG - chr3_3:8482133-8482152 Msa0440750:CDS 60.0%
CATCCCCTCAGCACTGTGTC+TGG + chr3_3:8482139-8482158 None:intergenic 60.0%
CCACCCCATTCTCACGCCAA+GGG + chr3_3:8482863-8482882 None:intergenic 60.0%
ACCACCCCATTCTCACGCCA+AGG + chr3_3:8482864-8482883 None:intergenic 60.0%
!! GAGAGGGCATTACGCGTGCT+TGG + chr3_3:8484027-8484046 None:intergenic 60.0%
CACACGTGGATCATAGCCGG+CGG + chr3_3:8484919-8484938 None:intergenic 60.0%
CTCCCGCTATAGCAGGGGCA+AGG + chr3_3:8478701-8478720 None:intergenic 65.0%
! CTTGCCCCTGCTATAGCGGG+AGG - chr3_3:8478699-8478718 Msa0440750:intron 65.0%
CACGGGTGACGCACACACGT+GGG + chr3_3:8480431-8480450 None:intergenic 65.0%
TCACGGGTGACGCACACACG+TGG + chr3_3:8480432-8480451 None:intergenic 65.0%
CCCTTGGCGTGAGAATGGGG+TGG - chr3_3:8482860-8482879 Msa0440750:five_prime_UTR 65.0%
! CGCCGGCTATGATCCACGTG+TGG - chr3_3:8484917-8484936 Msa0440750:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 8477500 8485504 8477500 ID=Msa0440750;Name=Msa0440750
chr3_3 mRNA 8477500 8485504 8477500 ID=Msa0440750-mRNA-1;Parent=Msa0440750;Name=Msa0440750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=976|1|1|1|0.5|0.4|5|383|525
chr3_3 exon 8477500 8478132 8477500 ID=Msa0440750-mRNA-1:exon:1791;Parent=Msa0440750-mRNA-1
chr3_3 exon 8480736 8480884 8480736 ID=Msa0440750-mRNA-1:exon:1790;Parent=Msa0440750-mRNA-1
chr3_3 exon 8481231 8483078 8481231 ID=Msa0440750-mRNA-1:exon:1789;Parent=Msa0440750-mRNA-1
chr3_3 exon 8483706 8483870 8483706 ID=Msa0440750-mRNA-1:exon:1788;Parent=Msa0440750-mRNA-1
chr3_3 exon 8485363 8485504 8485363 ID=Msa0440750-mRNA-1:exon:1787;Parent=Msa0440750-mRNA-1
chr3_3 five_prime_UTR 8485363 8485504 8485363 ID=Msa0440750-mRNA-1:five_prime_utr;Parent=Msa0440750-mRNA-1
chr3_3 five_prime_UTR 8483706 8483870 8483706 ID=Msa0440750-mRNA-1:five_prime_utr;Parent=Msa0440750-mRNA-1
chr3_3 five_prime_UTR 8482410 8483078 8482410 ID=Msa0440750-mRNA-1:five_prime_utr;Parent=Msa0440750-mRNA-1
chr3_3 CDS 8481231 8482409 8481231 ID=Msa0440750-mRNA-1:cds;Parent=Msa0440750-mRNA-1
chr3_3 CDS 8480736 8480884 8480736 ID=Msa0440750-mRNA-1:cds;Parent=Msa0440750-mRNA-1
chr3_3 CDS 8477883 8478132 8477883 ID=Msa0440750-mRNA-1:cds;Parent=Msa0440750-mRNA-1
chr3_3 three_prime_UTR 8477500 8477882 8477500 ID=Msa0440750-mRNA-1:three_prime_utr;Parent=Msa0440750-mRNA-1
Gene Sequence

>Msa0440750

ATGGCTTGGTATAGAAGAGGAAAGCTTGTTCTTGATGGTTTTCAAAATCCAATTTTTCTACCTAGTAACAGAACGTTGCAATCTGGGTATTTGAATCTGGGTAACAAAAGTGCTAACTTTAATGGGTTTTCTTCGTTTTCTTCAATTTTTCAACCTAGTAACAGAATTTTGCAATCTGGGTATTTGAATTTGGGTTCCAAAGATGCTAGCTTTAATGTGTTTTCTTCATTTTCTTCAATTTCTAAGAGATTAGGAAAAATGTGTTGTGAAAATAATAAGAATATTAGGGTTGGTTCTCAAGGTTGTAACTTTAATGGGTTTTCTTCATTTACTTTGATTTCTAAGATATTAGATAAAAGGGCTTTTGAGATTAATAAGAATATTGGGTTGGGTTGTAAAGGTGTTAGCTTTAATAGGTTTTCGTCGTTTTCGAAGAATTTCAAGAGATTAGACAACAGGGGTTTTGAAGTTAATACGAATTTTAGGAGATTATACTATGTGGATCCTCAAAATGTGCGGCATTTTAAGCCAAGAGGGCCAAAGAATTGGTTTCAGAATCCTAGGCATGTTATGATTGGTATAGTGGTTGGTTCTGGTGTTTTTATAACTGTGTATTTTGGGAATATGGAAACTGTTCCTTATACGAAGAGAACACATTTGATTTTGATTCCGAAAGAGATGGAGAAGAAGATTGGGGAGAGAGAGTTTGAGAAGATGAAGGCAGGTTTTAAGGGGAAATTGTTGCCTGCAATGCACCCTGAAAGTGTAAGAGTGAGGATGATAGCGAATGATATTGTTGAAGCTTTGAAGAGAGGGTTGAGTAAGGAGAATGTGTGGAGTGATATAGATTATGCTTCAGAAAATACTGTGTTTGGTGAAGAAAAGGGGAAGGAGACAATTAGTGCATTGACTGAAAGTGGAGGGAAAGTTGAAGGGAATTGGCATCGGGAAGATGAGATTCTTGATGATAAATGGGTTCAGAAGAGTAGGAAAAAGGGTCAGGAGCGAGGGTCGCAACCTAATACGTCACATTTGGATGGATTGAATTGGGAGATTTTGGTGGTGAATGATCCTATGGTTAATGCCTTTTGCTTACCTGGTGGGAAGATAGTTGTGTTTACGGGTTTGCTCGAACATTTTAGAAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGACATGCTGTGGCCAGACACAGTGCTGAGGGGATGACAAAGAATATGTGGGTTTTAATTCTAAACTTCATACTTTATCAATTCGTCACACCTGATATTGTCAACACTATGTCATCACTTCTCTTACGGCTTCCTTTCTCCAGAAGGATGGAAATTGAAGCTGATTACATTGGTCTTCTATTAGTTGCATCCGCCGGCTATGATCCACGTGTGGCACCTAAAGTCTACGAGAAGTTGGGAAAAATATCCGGCGATTCTAAGCTTTTAGATTATTTTGCCACTCATCCATCTGGAAGAAAACGAGCAGAATTACTGGCTCAAGCTCAGGTGATGGATGAAGCTCTTACTATATATAAGAATGTAAGAGAAGGACATGGTGTTGAAGGATTTCTTTAG

Protein sequence

>Msa0440750

MAWYRRGKLVLDGFQNPIFLPSNRTLQSGYLNLGNKSANFNGFSSFSSIFQPSNRILQSGYLNLGSKDASFNVFSSFSSISKRLGKMCCENNKNIRVGSQGCNFNGFSSFTLISKILDKRAFEINKNIGLGCKGVSFNRFSSFSKNFKRLDNRGFEVNTNFRRLYYVDPQNVRHFKPRGPKNWFQNPRHVMIGIVVGSGVFITVYFGNMETVPYTKRTHLILIPKEMEKKIGEREFEKMKAGFKGKLLPAMHPESVRVRMIANDIVEALKRGLSKENVWSDIDYASENTVFGEEKGKETISALTESGGKVEGNWHREDEILDDKWVQKSRKKGQERGSQPNTSHLDGLNWEILVVNDPMVNAFCLPGGKIVVFTGLLEHFRSDAEIATIIGHEVGHAVARHSAEGMTKNMWVLILNFILYQFVTPDIVNTMSSLLLRLPFSRRMEIEADYIGLLLVASAGYDPRVAPKVYEKLGKISGDSKLLDYFATHPSGRKRAELLAQAQVMDEALTIYKNVREGHGVEGFL*