AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832340 MtrunA17_Chr5g0393391 98.540 411 6 0 1 411 315 725 0.0 798
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832340 AT5G25070.1 51.220 410 196 1 1 406 322 731 2.07e-108 335

Find 71 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAACACGTATCACAAAAT+TGG 0.238322 5_4:+5372089 None:intergenic
CGGAAGACATTTCAAATTTA+CGG 0.241495 5_4:-5372278 Msa0832340:CDS
CTTCGACATCACCCATTTCT+TGG 0.247970 5_4:+5372379 None:intergenic
TGCTGCCAGAGCTTCCTTGC+AGG 0.286964 5_4:-5373425 Msa0832340:intron
ATTTAGCCTCACTAGCTATT+CGG 0.313696 5_4:+5372610 None:intergenic
ATATATATTGTGTACGATAT+TGG 0.337605 5_4:-5372051 Msa0832340:three_prime_UTR
CAATGATGTTGCTTTCTTCA+TGG 0.350218 5_4:+5374065 None:intergenic
CTTCTTCAGTGACAGAGTTT+CGG 0.353431 5_4:+5373669 None:intergenic
ATCATTGCATTCAAAAGAAA+TGG 0.355098 5_4:-5374049 Msa0832340:CDS
AATTGATAACCTTCTCGTTC+AGG 0.357533 5_4:-5373641 Msa0832340:CDS
AAGCTTGAGGAAGAAATTAA+AGG 0.359557 5_4:-5372525 Msa0832340:CDS
GAAAATAATCCTCTGCTTGA+AGG 0.366556 5_4:+5372707 None:intergenic
ACGGAAAGATTTGATTTCAA+TGG 0.376880 5_4:-5372259 Msa0832340:CDS
TGAAGGATGCTATGTCTTGC+TGG 0.381178 5_4:+5372724 None:intergenic
GAGTGTGCTAATGGATGAAT+TGG 0.396769 5_4:-5373869 Msa0832340:CDS
AAAAGCAGCTGCCCAAGAAA+TGG 0.401381 5_4:-5372391 Msa0832340:CDS
AACAATGAGGAAAAGCTCTC+TGG 0.403357 5_4:-5373478 Msa0832340:CDS
TTCGACATCACCCATTTCTT+GGG 0.407089 5_4:+5372380 None:intergenic
TAACATTGAGCTTTCAATAG+AGG 0.407824 5_4:-5373929 Msa0832340:CDS
AAGATAAATAATGTCGTCTC+TGG 0.411416 5_4:-5373769 Msa0832340:CDS
TTTAGCCTCACTAGCTATTC+GGG 0.411756 5_4:+5372611 None:intergenic
TCAACCATTGAGGTGAAGTA+TGG 0.417837 5_4:-5373730 Msa0832340:CDS
AGGCACCCTTGATAAATTGC+AGG 0.418273 5_4:-5372505 Msa0832340:CDS
AAAGAATGGGAGCAAAACTT+AGG 0.430881 5_4:-5373615 Msa0832340:CDS
AGGAGGAAGCTAAAGGATAC+AGG 0.435555 5_4:-5373573 Msa0832340:CDS
TAAAAGAAAGAGTGTGCTAA+TGG 0.437544 5_4:-5373878 Msa0832340:CDS
CAGTCTCCTGCAATTTATCA+AGG 0.444642 5_4:+5372499 None:intergenic
CAAAACTTAGGGAATTTGCT+AGG 0.448557 5_4:-5373603 Msa0832340:CDS
ATTAACCTGCAAGGAAGCTC+TGG 0.449548 5_4:+5373420 None:intergenic
TCTCGTTCAGGAAGAAAGAA+TGG 0.469047 5_4:-5373629 Msa0832340:CDS
TCGATCAACATACAATTTCA+AGG 0.470108 5_4:-5372301 Msa0832340:CDS
CGAAACTCTGTCACTGAAGA+AGG 0.470630 5_4:-5373668 Msa0832340:CDS
ATGTCATCTATACTGAAGTC+CGG 0.471801 5_4:-5373523 Msa0832340:CDS
TACTGCTGCAAGGAATTTCA+AGG 0.474319 5_4:-5372640 Msa0832340:CDS
TTTGCCATACTTCACCTCAA+TGG 0.480113 5_4:+5373726 None:intergenic
AAAGCAGCTGCCCAAGAAAT+GGG 0.490454 5_4:-5372390 Msa0832340:CDS
CAGCCTCAGCTTCTGCAAGC+AGG 0.491844 5_4:+5372346 None:intergenic
AGAAGTGAAATTGTTTCAGC+AGG 0.495187 5_4:-5373455 Msa0832340:CDS
TGGCTGTATCCATTCCCATC+TGG 0.500310 5_4:+5372562 None:intergenic
AGCACCTCAAATATTAAAAG+TGG 0.503960 5_4:+5372019 None:intergenic
TGAGGGAATGATCTTATTGA+AGG 0.505500 5_4:-5372478 Msa0832340:CDS
TGTCATCTATACTGAAGTCC+GGG 0.516629 5_4:-5373522 Msa0832340:CDS
TTCATCATCAGAAGCCTTGG+AGG 0.517836 5_4:-5374016 Msa0832340:CDS
AAGAATGGGAGCAAAACTTA+GGG 0.522281 5_4:-5373614 Msa0832340:CDS
TTCGAATCTTGAAAAGCTTG+AGG 0.533399 5_4:-5372538 Msa0832340:CDS
AAAACTTAGGGAATTTGCTA+GGG 0.538995 5_4:-5373602 Msa0832340:CDS
GGAATTTGCTAGGGTTTCTG+AGG 0.541022 5_4:-5373593 Msa0832340:CDS
CTCGTTCAGGAAGAAAGAAT+GGG 0.543231 5_4:-5373628 Msa0832340:CDS
AAGTCTCAGTTTATCCTCCC+CGG 0.543354 5_4:+5373504 None:intergenic
AGAGAATATCCAGATGGGAA+TGG 0.545530 5_4:-5372571 Msa0832340:CDS
TTCTTTCTTCCTGAACGAGA+AGG 0.555128 5_4:+5373632 None:intergenic
AGAGATTCAGTCAACCATTG+AGG 0.558406 5_4:-5373740 Msa0832340:CDS
GTTTCTGAGGAGGAAGCTAA+AGG 0.564591 5_4:-5373580 Msa0832340:CDS
TGATAAATTGCAGGAGACTG+AGG 0.570191 5_4:-5372496 Msa0832340:CDS
ATTTGCTAGGGTTTCTGAGG+AGG 0.580411 5_4:-5373590 Msa0832340:CDS
ATTCAAAAGAAATGGAACAA+TGG 0.589269 5_4:-5374041 Msa0832340:CDS
TGAGAAAGAGAATATCCAGA+TGG 0.592249 5_4:-5372577 Msa0832340:CDS
GAGAGTTCCAGAACTTGAAG+CGG 0.597506 5_4:-5372676 Msa0832340:CDS
GAGAAAGAGAATATCCAGAT+GGG 0.606890 5_4:-5372576 Msa0832340:CDS
GATAAATTGCAGGAGACTGA+GGG 0.609466 5_4:-5372495 Msa0832340:CDS
AGTCTCCTGCAATTTATCAA+GGG 0.623518 5_4:+5372500 None:intergenic
TCTCCTGCTTGCAGAAGCTG+AGG 0.624719 5_4:-5372349 Msa0832340:CDS
ACATAGCATCCTTCAAGCAG+AGG 0.634177 5_4:-5372716 Msa0832340:CDS
AGTACAAGAATTAACCTGCA+AGG 0.635054 5_4:+5373411 None:intergenic
GAAGGAGAAAGAGTTAGCAA+TGG 0.653490 5_4:-5372460 Msa0832340:CDS
GGAGGAAGCTAAAGGATACA+GGG 0.664518 5_4:-5373572 Msa0832340:CDS
GGCTGCCCGAATAGCTAGTG+AGG 0.669487 5_4:-5372616 Msa0832340:CDS
ACTGAGACTTACAAACAATG+AGG 0.670889 5_4:-5373491 Msa0832340:CDS
GTCATCTATACTGAAGTCCG+GGG 0.682251 5_4:-5373521 Msa0832340:CDS
ATCAACATACAATTTCAAGG+CGG 0.735712 5_4:-5372298 Msa0832340:CDS
TGCTGCAAGGAATTTCAAGG+AGG 0.736309 5_4:-5372637 Msa0832340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATAGTAATAAATAAAAAT+AGG + chr5_4:5373009-5373028 None:intergenic 10.0%
!! CTATAGTAATAAATAAAAAT+AGG + chr5_4:5373009-5373028 None:intergenic 10.0%
!!! ACTAATATCATTTTTAAGTT+GGG + chr5_4:5374084-5374103 None:intergenic 15.0%
!!! TACTAATATCATTTTTAAGT+TGG + chr5_4:5374085-5374104 None:intergenic 15.0%
!!! ACTAATATCATTTTTAAGTT+GGG + chr5_4:5374084-5374103 None:intergenic 15.0%
!!! TACTAATATCATTTTTAAGT+TGG + chr5_4:5374085-5374104 None:intergenic 15.0%
!! TATTGTTAAAAACGTCTTAA+TGG - chr5_4:5373175-5373194 Msa0832340:intron 20.0%
!!! TTTTATCAAGAATTGATACA+AGG + chr5_4:5373834-5373853 None:intergenic 20.0%
!! AATTCTTGATAAAAAGCAAT+TGG - chr5_4:5373840-5373859 Msa0832340:CDS 20.0%
!!! TTATCCAAACAAAATTTTAG+TGG - chr5_4:5373896-5373915 Msa0832340:CDS 20.0%
!!! AAATCCACTAAAATTTTGTT+TGG + chr5_4:5373903-5373922 None:intergenic 20.0%
!! ATATATATTGTGTACGATAT+TGG - chr5_4:5374015-5374034 Msa0832340:CDS 20.0%
!!! TTTACCACTTTTAATATTTG+AGG - chr5_4:5374043-5374062 Msa0832340:CDS 20.0%
!!! TAATATCATTTTTAAGTTGG+GGG + chr5_4:5374082-5374101 None:intergenic 20.0%
!!! CTAATATCATTTTTAAGTTG+GGG + chr5_4:5374083-5374102 None:intergenic 20.0%
!! TATTGTTAAAAACGTCTTAA+TGG - chr5_4:5373175-5373194 Msa0832340:intron 20.0%
!!! TTTTATCAAGAATTGATACA+AGG + chr5_4:5373834-5373853 None:intergenic 20.0%
!! AATTCTTGATAAAAAGCAAT+TGG - chr5_4:5373840-5373859 Msa0832340:CDS 20.0%
!!! TTATCCAAACAAAATTTTAG+TGG - chr5_4:5373896-5373915 Msa0832340:CDS 20.0%
!!! AAATCCACTAAAATTTTGTT+TGG + chr5_4:5373903-5373922 None:intergenic 20.0%
!! ATATATATTGTGTACGATAT+TGG - chr5_4:5374015-5374034 Msa0832340:CDS 20.0%
!!! TTTACCACTTTTAATATTTG+AGG - chr5_4:5374043-5374062 Msa0832340:CDS 20.0%
!!! TAATATCATTTTTAAGTTGG+GGG + chr5_4:5374082-5374101 None:intergenic 20.0%
!!! CTAATATCATTTTTAAGTTG+GGG + chr5_4:5374083-5374102 None:intergenic 20.0%
! ATCATTGCATTCAAAAGAAA+TGG - chr5_4:5372017-5372036 Msa0832340:three_prime_UTR 25.0%
! ATTCAAAAGAAATGGAACAA+TGG - chr5_4:5372025-5372044 Msa0832340:three_prime_UTR 25.0%
!!! TGTACTTATTTTTATGTGCT+TGG - chr5_4:5372672-5372691 Msa0832340:CDS 25.0%
! GTCAATATCTCTAGATATAA+TGG - chr5_4:5372910-5372929 Msa0832340:intron 25.0%
! ATAAAACAATGACCAAAAAG+TGG - chr5_4:5373053-5373072 Msa0832340:intron 25.0%
!!! AATGTCATCACATTGTTTTT+AGG - chr5_4:5373294-5373313 Msa0832340:intron 25.0%
! ATCATTGCATTCAAAAGAAA+TGG - chr5_4:5372017-5372036 Msa0832340:three_prime_UTR 25.0%
! ATTCAAAAGAAATGGAACAA+TGG - chr5_4:5372025-5372044 Msa0832340:three_prime_UTR 25.0%
!!! TGTACTTATTTTTATGTGCT+TGG - chr5_4:5372672-5372691 Msa0832340:CDS 25.0%
! GTCAATATCTCTAGATATAA+TGG - chr5_4:5372910-5372929 Msa0832340:intron 25.0%
! ATAAAACAATGACCAAAAAG+TGG - chr5_4:5373053-5373072 Msa0832340:intron 25.0%
!!! AATGTCATCACATTGTTTTT+AGG - chr5_4:5373294-5373313 Msa0832340:intron 25.0%
TAACATTGAGCTTTCAATAG+AGG - chr5_4:5372137-5372156 Msa0832340:three_prime_UTR 30.0%
! TAAAAGAAAGAGTGTGCTAA+TGG - chr5_4:5372188-5372207 Msa0832340:exon 30.0%
AAGATAAATAATGTCGTCTC+TGG - chr5_4:5372297-5372316 Msa0832340:CDS 30.0%
!! AAAACTTAGGGAATTTGCTA+GGG - chr5_4:5372464-5372483 Msa0832340:CDS 30.0%
CAAATTAAAGGTAGGAACTA+GGG + chr5_4:5372741-5372760 None:intergenic 30.0%
TCAAATTAAAGGTAGGAACT+AGG + chr5_4:5372742-5372761 None:intergenic 30.0%
AAGCTATGTTAGGTGAATAT+AGG - chr5_4:5372778-5372797 Msa0832340:intron 30.0%
! TTCCTCTGAAAGTAATAGTT+TGG - chr5_4:5372888-5372907 Msa0832340:intron 30.0%
AATAGAAGAAATGCAACCAT+GGG + chr5_4:5372986-5373005 None:intergenic 30.0%
ACACTTATTCATTTCCTCAA+TGG - chr5_4:5373087-5373106 Msa0832340:intron 30.0%
CACTTATTCATTTCCTCAAT+GGG - chr5_4:5373088-5373107 Msa0832340:intron 30.0%
TTGCATGGAAAAAAACAAAC+AGG + chr5_4:5373249-5373268 None:intergenic 30.0%
AAGCTTGAGGAAGAAATTAA+AGG - chr5_4:5373541-5373560 Msa0832340:CDS 30.0%
TCGATCAACATACAATTTCA+AGG - chr5_4:5373765-5373784 Msa0832340:CDS 30.0%
ATCAACATACAATTTCAAGG+CGG - chr5_4:5373768-5373787 Msa0832340:CDS 30.0%
CGGAAGACATTTCAAATTTA+CGG - chr5_4:5373788-5373807 Msa0832340:CDS 30.0%
! ACGGAAAGATTTGATTTCAA+TGG - chr5_4:5373807-5373826 Msa0832340:CDS 30.0%
! TGCTGCATTCAGTAATTTTT+AGG + chr5_4:5373950-5373969 None:intergenic 30.0%
CATAACACGTATCACAAAAT+TGG + chr5_4:5373980-5373999 None:intergenic 30.0%
AGCACCTCAAATATTAAAAG+TGG + chr5_4:5374050-5374069 None:intergenic 30.0%
TAACATTGAGCTTTCAATAG+AGG - chr5_4:5372137-5372156 Msa0832340:three_prime_UTR 30.0%
! TAAAAGAAAGAGTGTGCTAA+TGG - chr5_4:5372188-5372207 Msa0832340:exon 30.0%
AAGATAAATAATGTCGTCTC+TGG - chr5_4:5372297-5372316 Msa0832340:CDS 30.0%
!! AAAACTTAGGGAATTTGCTA+GGG - chr5_4:5372464-5372483 Msa0832340:CDS 30.0%
CAAATTAAAGGTAGGAACTA+GGG + chr5_4:5372741-5372760 None:intergenic 30.0%
TCAAATTAAAGGTAGGAACT+AGG + chr5_4:5372742-5372761 None:intergenic 30.0%
AAGCTATGTTAGGTGAATAT+AGG - chr5_4:5372778-5372797 Msa0832340:intron 30.0%
! TTCCTCTGAAAGTAATAGTT+TGG - chr5_4:5372888-5372907 Msa0832340:intron 30.0%
AATAGAAGAAATGCAACCAT+GGG + chr5_4:5372986-5373005 None:intergenic 30.0%
ACACTTATTCATTTCCTCAA+TGG - chr5_4:5373087-5373106 Msa0832340:intron 30.0%
CACTTATTCATTTCCTCAAT+GGG - chr5_4:5373088-5373107 Msa0832340:intron 30.0%
TTGCATGGAAAAAAACAAAC+AGG + chr5_4:5373249-5373268 None:intergenic 30.0%
AAGCTTGAGGAAGAAATTAA+AGG - chr5_4:5373541-5373560 Msa0832340:CDS 30.0%
TCGATCAACATACAATTTCA+AGG - chr5_4:5373765-5373784 Msa0832340:CDS 30.0%
ATCAACATACAATTTCAAGG+CGG - chr5_4:5373768-5373787 Msa0832340:CDS 30.0%
CGGAAGACATTTCAAATTTA+CGG - chr5_4:5373788-5373807 Msa0832340:CDS 30.0%
! ACGGAAAGATTTGATTTCAA+TGG - chr5_4:5373807-5373826 Msa0832340:CDS 30.0%
! TGCTGCATTCAGTAATTTTT+AGG + chr5_4:5373950-5373969 None:intergenic 30.0%
CATAACACGTATCACAAAAT+TGG + chr5_4:5373980-5373999 None:intergenic 30.0%
AGCACCTCAAATATTAAAAG+TGG + chr5_4:5374050-5374069 None:intergenic 30.0%
!! CAATGATGTTGCTTTCTTCA+TGG + chr5_4:5372004-5372023 None:intergenic 35.0%
AGCCTTGGAGGTTAAAAAAA+TGG - chr5_4:5372062-5372081 Msa0832340:three_prime_UTR 35.0%
!!! CTCCATTTTTTTAACCTCCA+AGG + chr5_4:5372067-5372086 None:intergenic 35.0%
GGAGGTTAAAAAAATGGAGT+TGG - chr5_4:5372068-5372087 Msa0832340:three_prime_UTR 35.0%
! GCACACTCTTTCTTTTACAA+AGG + chr5_4:5372185-5372204 None:intergenic 35.0%
! AATTGATAACCTTCTCGTTC+AGG - chr5_4:5372425-5372444 Msa0832340:CDS 35.0%
AAAGAATGGGAGCAAAACTT+AGG - chr5_4:5372451-5372470 Msa0832340:CDS 35.0%
AAGAATGGGAGCAAAACTTA+GGG - chr5_4:5372452-5372471 Msa0832340:CDS 35.0%
! CAAAACTTAGGGAATTTGCT+AGG - chr5_4:5372463-5372482 Msa0832340:CDS 35.0%
ATGTCATCTATACTGAAGTC+CGG - chr5_4:5372543-5372562 Msa0832340:CDS 35.0%
ACTGAGACTTACAAACAATG+AGG - chr5_4:5372575-5372594 Msa0832340:CDS 35.0%
AGAAGTGAAATTGTTTCAGC+AGG - chr5_4:5372611-5372630 Msa0832340:CDS 35.0%
AGTACAAGAATTAACCTGCA+AGG + chr5_4:5372658-5372677 None:intergenic 35.0%
TGTCACGTCAAATTAAAGGT+AGG + chr5_4:5372749-5372768 None:intergenic 35.0%
TGGATGTCACGTCAAATTAA+AGG + chr5_4:5372753-5372772 None:intergenic 35.0%
GACCAAACTATTACTTTCAG+AGG + chr5_4:5372893-5372912 None:intergenic 35.0%
!!! AGACAATTTTTTACCACCCA+TGG - chr5_4:5372967-5372986 Msa0832340:intron 35.0%
GAATAGAAGAAATGCAACCA+TGG + chr5_4:5372987-5373006 None:intergenic 35.0%
!! TTTGACATGTGTCCACTTTT+TGG + chr5_4:5373068-5373087 None:intergenic 35.0%
!! TCCTCAATGGGTTTTTACAT+AGG - chr5_4:5373100-5373119 Msa0832340:intron 35.0%
ACCTATGTAAAAACCCATTG+AGG + chr5_4:5373104-5373123 None:intergenic 35.0%
GAAAATAATCCTCTGCTTGA+AGG + chr5_4:5373362-5373381 None:intergenic 35.0%
!!! TTTTTTTCCGCTTCAAGTTC+TGG + chr5_4:5373400-5373419 None:intergenic 35.0%
ATTTAGCCTCACTAGCTATT+CGG + chr5_4:5373459-5373478 None:intergenic 35.0%
TGAGAAAGAGAATATCCAGA+TGG - chr5_4:5373489-5373508 Msa0832340:CDS 35.0%
GAGAAAGAGAATATCCAGAT+GGG - chr5_4:5373490-5373509 Msa0832340:CDS 35.0%
!! AAGCTTTTCAAGATTCGAAG+TGG + chr5_4:5373527-5373546 None:intergenic 35.0%
TTCGAATCTTGAAAAGCTTG+AGG - chr5_4:5373528-5373547 Msa0832340:CDS 35.0%
AGTCTCCTGCAATTTATCAA+GGG + chr5_4:5373569-5373588 None:intergenic 35.0%
TGAGGGAATGATCTTATTGA+AGG - chr5_4:5373588-5373607 Msa0832340:CDS 35.0%
!! CAATGATGTTGCTTTCTTCA+TGG + chr5_4:5372004-5372023 None:intergenic 35.0%
AGCCTTGGAGGTTAAAAAAA+TGG - chr5_4:5372062-5372081 Msa0832340:three_prime_UTR 35.0%
!!! CTCCATTTTTTTAACCTCCA+AGG + chr5_4:5372067-5372086 None:intergenic 35.0%
GGAGGTTAAAAAAATGGAGT+TGG - chr5_4:5372068-5372087 Msa0832340:three_prime_UTR 35.0%
! GCACACTCTTTCTTTTACAA+AGG + chr5_4:5372185-5372204 None:intergenic 35.0%
! AATTGATAACCTTCTCGTTC+AGG - chr5_4:5372425-5372444 Msa0832340:CDS 35.0%
AAAGAATGGGAGCAAAACTT+AGG - chr5_4:5372451-5372470 Msa0832340:CDS 35.0%
AAGAATGGGAGCAAAACTTA+GGG - chr5_4:5372452-5372471 Msa0832340:CDS 35.0%
! CAAAACTTAGGGAATTTGCT+AGG - chr5_4:5372463-5372482 Msa0832340:CDS 35.0%
ATGTCATCTATACTGAAGTC+CGG - chr5_4:5372543-5372562 Msa0832340:CDS 35.0%
ACTGAGACTTACAAACAATG+AGG - chr5_4:5372575-5372594 Msa0832340:CDS 35.0%
AGAAGTGAAATTGTTTCAGC+AGG - chr5_4:5372611-5372630 Msa0832340:CDS 35.0%
AGTACAAGAATTAACCTGCA+AGG + chr5_4:5372658-5372677 None:intergenic 35.0%
TGTCACGTCAAATTAAAGGT+AGG + chr5_4:5372749-5372768 None:intergenic 35.0%
TGGATGTCACGTCAAATTAA+AGG + chr5_4:5372753-5372772 None:intergenic 35.0%
GACCAAACTATTACTTTCAG+AGG + chr5_4:5372893-5372912 None:intergenic 35.0%
!!! AGACAATTTTTTACCACCCA+TGG - chr5_4:5372967-5372986 Msa0832340:intron 35.0%
GAATAGAAGAAATGCAACCA+TGG + chr5_4:5372987-5373006 None:intergenic 35.0%
!! TTTGACATGTGTCCACTTTT+TGG + chr5_4:5373068-5373087 None:intergenic 35.0%
!! TCCTCAATGGGTTTTTACAT+AGG - chr5_4:5373100-5373119 Msa0832340:intron 35.0%
ACCTATGTAAAAACCCATTG+AGG + chr5_4:5373104-5373123 None:intergenic 35.0%
GAAAATAATCCTCTGCTTGA+AGG + chr5_4:5373362-5373381 None:intergenic 35.0%
!!! TTTTTTTCCGCTTCAAGTTC+TGG + chr5_4:5373400-5373419 None:intergenic 35.0%
ATTTAGCCTCACTAGCTATT+CGG + chr5_4:5373459-5373478 None:intergenic 35.0%
TGAGAAAGAGAATATCCAGA+TGG - chr5_4:5373489-5373508 Msa0832340:CDS 35.0%
GAGAAAGAGAATATCCAGAT+GGG - chr5_4:5373490-5373509 Msa0832340:CDS 35.0%
!! AAGCTTTTCAAGATTCGAAG+TGG + chr5_4:5373527-5373546 None:intergenic 35.0%
TTCGAATCTTGAAAAGCTTG+AGG - chr5_4:5373528-5373547 Msa0832340:CDS 35.0%
AGTCTCCTGCAATTTATCAA+GGG + chr5_4:5373569-5373588 None:intergenic 35.0%
TGAGGGAATGATCTTATTGA+AGG - chr5_4:5373588-5373607 Msa0832340:CDS 35.0%
! GTTTTCATCATCAGAAGCCT+TGG - chr5_4:5372047-5372066 Msa0832340:three_prime_UTR 40.0%
! GAGTGTGCTAATGGATGAAT+TGG - chr5_4:5372197-5372216 Msa0832340:CDS 40.0%
AGAGATTCAGTCAACCATTG+AGG - chr5_4:5372326-5372345 Msa0832340:CDS 40.0%
TCAACCATTGAGGTGAAGTA+TGG - chr5_4:5372336-5372355 Msa0832340:CDS 40.0%
TTTGCCATACTTCACCTCAA+TGG + chr5_4:5372343-5372362 None:intergenic 40.0%
CTTCTTCAGTGACAGAGTTT+CGG + chr5_4:5372400-5372419 None:intergenic 40.0%
TTCTTTCTTCCTGAACGAGA+AGG + chr5_4:5372437-5372456 None:intergenic 40.0%
TCTCGTTCAGGAAGAAAGAA+TGG - chr5_4:5372437-5372456 Msa0832340:CDS 40.0%
CTCGTTCAGGAAGAAAGAAT+GGG - chr5_4:5372438-5372457 Msa0832340:CDS 40.0%
TGTCATCTATACTGAAGTCC+GGG - chr5_4:5372544-5372563 Msa0832340:CDS 40.0%
AACAATGAGGAAAAGCTCTC+TGG - chr5_4:5372588-5372607 Msa0832340:CDS 40.0%
ATCCAAGCTCAAGCTATGTT+AGG - chr5_4:5372768-5372787 Msa0832340:intron 40.0%
AAAACTCCCAACACAAGTCA+AGG - chr5_4:5372940-5372959 Msa0832340:intron 40.0%
!! CTCATTCCTTGACTTGTGTT+GGG + chr5_4:5372949-5372968 None:intergenic 40.0%
!! TCTCATTCCTTGACTTGTGT+TGG + chr5_4:5372950-5372969 None:intergenic 40.0%
!! CTAGAGTCTGTGTTTTTGCA+TGG + chr5_4:5373264-5373283 None:intergenic 40.0%
AAAAAGTTGCTACTGCTGCA+AGG - chr5_4:5373416-5373435 Msa0832340:intron 40.0%
TACTGCTGCAAGGAATTTCA+AGG - chr5_4:5373426-5373445 Msa0832340:CDS 40.0%
TTTAGCCTCACTAGCTATTC+GGG + chr5_4:5373458-5373477 None:intergenic 40.0%
AGAGAATATCCAGATGGGAA+TGG - chr5_4:5373495-5373514 Msa0832340:CDS 40.0%
CAGTCTCCTGCAATTTATCA+AGG + chr5_4:5373570-5373589 None:intergenic 40.0%
TGATAAATTGCAGGAGACTG+AGG - chr5_4:5373570-5373589 Msa0832340:CDS 40.0%
GATAAATTGCAGGAGACTGA+GGG - chr5_4:5373571-5373590 Msa0832340:CDS 40.0%
GAAGGAGAAAGAGTTAGCAA+TGG - chr5_4:5373606-5373625 Msa0832340:CDS 40.0%
TTCGACATCACCCATTTCTT+GGG + chr5_4:5373689-5373708 None:intergenic 40.0%
! GTTTTCATCATCAGAAGCCT+TGG - chr5_4:5372047-5372066 Msa0832340:three_prime_UTR 40.0%
! GAGTGTGCTAATGGATGAAT+TGG - chr5_4:5372197-5372216 Msa0832340:CDS 40.0%
AGAGATTCAGTCAACCATTG+AGG - chr5_4:5372326-5372345 Msa0832340:CDS 40.0%
TCAACCATTGAGGTGAAGTA+TGG - chr5_4:5372336-5372355 Msa0832340:CDS 40.0%
TTTGCCATACTTCACCTCAA+TGG + chr5_4:5372343-5372362 None:intergenic 40.0%
CTTCTTCAGTGACAGAGTTT+CGG + chr5_4:5372400-5372419 None:intergenic 40.0%
TTCTTTCTTCCTGAACGAGA+AGG + chr5_4:5372437-5372456 None:intergenic 40.0%
TCTCGTTCAGGAAGAAAGAA+TGG - chr5_4:5372437-5372456 Msa0832340:CDS 40.0%
CTCGTTCAGGAAGAAAGAAT+GGG - chr5_4:5372438-5372457 Msa0832340:CDS 40.0%
TGTCATCTATACTGAAGTCC+GGG - chr5_4:5372544-5372563 Msa0832340:CDS 40.0%
AACAATGAGGAAAAGCTCTC+TGG - chr5_4:5372588-5372607 Msa0832340:CDS 40.0%
ATCCAAGCTCAAGCTATGTT+AGG - chr5_4:5372768-5372787 Msa0832340:intron 40.0%
AAAACTCCCAACACAAGTCA+AGG - chr5_4:5372940-5372959 Msa0832340:intron 40.0%
!! CTCATTCCTTGACTTGTGTT+GGG + chr5_4:5372949-5372968 None:intergenic 40.0%
!! TCTCATTCCTTGACTTGTGT+TGG + chr5_4:5372950-5372969 None:intergenic 40.0%
!! CTAGAGTCTGTGTTTTTGCA+TGG + chr5_4:5373264-5373283 None:intergenic 40.0%
AAAAAGTTGCTACTGCTGCA+AGG - chr5_4:5373416-5373435 Msa0832340:intron 40.0%
TACTGCTGCAAGGAATTTCA+AGG - chr5_4:5373426-5373445 Msa0832340:CDS 40.0%
TTTAGCCTCACTAGCTATTC+GGG + chr5_4:5373458-5373477 None:intergenic 40.0%
AGAGAATATCCAGATGGGAA+TGG - chr5_4:5373495-5373514 Msa0832340:CDS 40.0%
CAGTCTCCTGCAATTTATCA+AGG + chr5_4:5373570-5373589 None:intergenic 40.0%
TGATAAATTGCAGGAGACTG+AGG - chr5_4:5373570-5373589 Msa0832340:CDS 40.0%
GATAAATTGCAGGAGACTGA+GGG - chr5_4:5373571-5373590 Msa0832340:CDS 40.0%
GAAGGAGAAAGAGTTAGCAA+TGG - chr5_4:5373606-5373625 Msa0832340:CDS 40.0%
TTCGACATCACCCATTTCTT+GGG + chr5_4:5373689-5373708 None:intergenic 40.0%
TTCATCATCAGAAGCCTTGG+AGG - chr5_4:5372050-5372069 Msa0832340:three_prime_UTR 45.0%
CGAAACTCTGTCACTGAAGA+AGG - chr5_4:5372398-5372417 Msa0832340:CDS 45.0%
!! GGAATTTGCTAGGGTTTCTG+AGG - chr5_4:5372473-5372492 Msa0832340:CDS 45.0%
! ATTTGCTAGGGTTTCTGAGG+AGG - chr5_4:5372476-5372495 Msa0832340:CDS 45.0%
! GTTTCTGAGGAGGAAGCTAA+AGG - chr5_4:5372486-5372505 Msa0832340:CDS 45.0%
AGGAGGAAGCTAAAGGATAC+AGG - chr5_4:5372493-5372512 Msa0832340:CDS 45.0%
GGAGGAAGCTAAAGGATACA+GGG - chr5_4:5372494-5372513 Msa0832340:CDS 45.0%
GTCATCTATACTGAAGTCCG+GGG - chr5_4:5372545-5372564 Msa0832340:CDS 45.0%
AAGTCTCAGTTTATCCTCCC+CGG + chr5_4:5372565-5372584 None:intergenic 45.0%
ATTAACCTGCAAGGAAGCTC+TGG + chr5_4:5372649-5372668 None:intergenic 45.0%
CACCTAACATAGCTTGAGCT+TGG + chr5_4:5372773-5372792 None:intergenic 45.0%
AGAAGAAATGCAACCATGGG+TGG + chr5_4:5372983-5373002 None:intergenic 45.0%
TGAAGGATGCTATGTCTTGC+TGG + chr5_4:5373345-5373364 None:intergenic 45.0%
ACATAGCATCCTTCAAGCAG+AGG - chr5_4:5373350-5373369 Msa0832340:intron 45.0%
GAGAGTTCCAGAACTTGAAG+CGG - chr5_4:5373390-5373409 Msa0832340:intron 45.0%
TGCTGCAAGGAATTTCAAGG+AGG - chr5_4:5373429-5373448 Msa0832340:CDS 45.0%
AGGCACCCTTGATAAATTGC+AGG - chr5_4:5373561-5373580 Msa0832340:CDS 45.0%
AAAAGCAGCTGCCCAAGAAA+TGG - chr5_4:5373675-5373694 Msa0832340:CDS 45.0%
AAAGCAGCTGCCCAAGAAAT+GGG - chr5_4:5373676-5373695 Msa0832340:CDS 45.0%
CTTCGACATCACCCATTTCT+TGG + chr5_4:5373690-5373709 None:intergenic 45.0%
!! TTTTTAGGAGCACACGCATC+TGG + chr5_4:5373935-5373954 None:intergenic 45.0%
TTCATCATCAGAAGCCTTGG+AGG - chr5_4:5372050-5372069 Msa0832340:three_prime_UTR 45.0%
CGAAACTCTGTCACTGAAGA+AGG - chr5_4:5372398-5372417 Msa0832340:CDS 45.0%
!! GGAATTTGCTAGGGTTTCTG+AGG - chr5_4:5372473-5372492 Msa0832340:CDS 45.0%
! ATTTGCTAGGGTTTCTGAGG+AGG - chr5_4:5372476-5372495 Msa0832340:CDS 45.0%
! GTTTCTGAGGAGGAAGCTAA+AGG - chr5_4:5372486-5372505 Msa0832340:CDS 45.0%
AGGAGGAAGCTAAAGGATAC+AGG - chr5_4:5372493-5372512 Msa0832340:CDS 45.0%
GGAGGAAGCTAAAGGATACA+GGG - chr5_4:5372494-5372513 Msa0832340:CDS 45.0%
GTCATCTATACTGAAGTCCG+GGG - chr5_4:5372545-5372564 Msa0832340:CDS 45.0%
AAGTCTCAGTTTATCCTCCC+CGG + chr5_4:5372565-5372584 None:intergenic 45.0%
ATTAACCTGCAAGGAAGCTC+TGG + chr5_4:5372649-5372668 None:intergenic 45.0%
CACCTAACATAGCTTGAGCT+TGG + chr5_4:5372773-5372792 None:intergenic 45.0%
AGAAGAAATGCAACCATGGG+TGG + chr5_4:5372983-5373002 None:intergenic 45.0%
TGAAGGATGCTATGTCTTGC+TGG + chr5_4:5373345-5373364 None:intergenic 45.0%
ACATAGCATCCTTCAAGCAG+AGG - chr5_4:5373350-5373369 Msa0832340:intron 45.0%
GAGAGTTCCAGAACTTGAAG+CGG - chr5_4:5373390-5373409 Msa0832340:intron 45.0%
TGCTGCAAGGAATTTCAAGG+AGG - chr5_4:5373429-5373448 Msa0832340:CDS 45.0%
AGGCACCCTTGATAAATTGC+AGG - chr5_4:5373561-5373580 Msa0832340:CDS 45.0%
AAAAGCAGCTGCCCAAGAAA+TGG - chr5_4:5373675-5373694 Msa0832340:CDS 45.0%
AAAGCAGCTGCCCAAGAAAT+GGG - chr5_4:5373676-5373695 Msa0832340:CDS 45.0%
CTTCGACATCACCCATTTCT+TGG + chr5_4:5373690-5373709 None:intergenic 45.0%
!! TTTTTAGGAGCACACGCATC+TGG + chr5_4:5373935-5373954 None:intergenic 45.0%
ATCTATACTGAAGTCCGGGG+AGG - chr5_4:5372548-5372567 Msa0832340:CDS 50.0%
TCCAGACCTGTGCTTAAGCA+CGG - chr5_4:5373135-5373154 Msa0832340:intron 50.0%
TGGCTGTATCCATTCCCATC+TGG + chr5_4:5373507-5373526 None:intergenic 50.0%
ATCTATACTGAAGTCCGGGG+AGG - chr5_4:5372548-5372567 Msa0832340:CDS 50.0%
TCCAGACCTGTGCTTAAGCA+CGG - chr5_4:5373135-5373154 Msa0832340:intron 50.0%
TGGCTGTATCCATTCCCATC+TGG + chr5_4:5373507-5373526 None:intergenic 50.0%
CCAGACCTGTGCTTAAGCAC+GGG - chr5_4:5373136-5373155 Msa0832340:intron 55.0%
GTTCACCCGTGCTTAAGCAC+AGG + chr5_4:5373144-5373163 None:intergenic 55.0%
TCTCCTGCTTGCAGAAGCTG+AGG - chr5_4:5373717-5373736 Msa0832340:CDS 55.0%
CCAGACCTGTGCTTAAGCAC+GGG - chr5_4:5373136-5373155 Msa0832340:intron 55.0%
GTTCACCCGTGCTTAAGCAC+AGG + chr5_4:5373144-5373163 None:intergenic 55.0%
TCTCCTGCTTGCAGAAGCTG+AGG - chr5_4:5373717-5373736 Msa0832340:CDS 55.0%
TGCTGCCAGAGCTTCCTTGC+AGG - chr5_4:5372641-5372660 Msa0832340:CDS 60.0%
CCCGTGCTTAAGCACAGGTC+TGG + chr5_4:5373139-5373158 None:intergenic 60.0%
GGCTGCCCGAATAGCTAGTG+AGG - chr5_4:5373450-5373469 Msa0832340:CDS 60.0%
CAGCCTCAGCTTCTGCAAGC+AGG + chr5_4:5373723-5373742 None:intergenic 60.0%
TGCTGCCAGAGCTTCCTTGC+AGG - chr5_4:5372641-5372660 Msa0832340:CDS 60.0%
CCCGTGCTTAAGCACAGGTC+TGG + chr5_4:5373139-5373158 None:intergenic 60.0%
GGCTGCCCGAATAGCTAGTG+AGG - chr5_4:5373450-5373469 Msa0832340:CDS 60.0%
CAGCCTCAGCTTCTGCAAGC+AGG + chr5_4:5373723-5373742 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5371975 5374113 5371975 ID=Msa0832340;Name=Msa0832340
chr5_4 mRNA 5371975 5374113 5371975 ID=Msa0832340-mRNA-1;Parent=Msa0832340;Name=Msa0832340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=28|1|1|1|1|1|2|222|411
chr5_4 exon 5371975 5372772 5371975 ID=Msa0832340-mRNA-1:exon:2271;Parent=Msa0832340-mRNA-1
chr5_4 exon 5373426 5374113 5373426 ID=Msa0832340-mRNA-1:exon:2270;Parent=Msa0832340-mRNA-1
chr5_4 five_prime_UTR 5374086 5374113 5374086 ID=Msa0832340-mRNA-1:five_prime_utr;Parent=Msa0832340-mRNA-1
chr5_4 CDS 5373426 5374085 5373426 ID=Msa0832340-mRNA-1:cds;Parent=Msa0832340-mRNA-1
chr5_4 CDS 5372197 5372772 5372197 ID=Msa0832340-mRNA-1:cds;Parent=Msa0832340-mRNA-1
chr5_4 three_prime_UTR 5371975 5372196 5371975 ID=Msa0832340-mRNA-1:three_prime_utr;Parent=Msa0832340-mRNA-1
Gene Sequence

>Msa0832340

ATGAAGAAAGCAACATCATTGCATTCAAAAGAAATGGAACAATGGTTTTCATCATCAGAAGCCTTGGAGGTTAAAAAAATGGAGTTGGAGATTGAATCACATTTTATAAGTGAAGCTCATACAGAACTTAATAATAACATTGAGCTTTCAATAGAGGATGACAAAAAAGAAAAAGAGATCCTTTGTAAAAGAAAGAGTGTGCTAATGGATGAATTGGAAAAACTTCTTGCTTTAGTCAAACAGAAAGAAAAAGAGATAGCTGACAATGATTCTGATTTAAAAGCTGTAGAGCATAAGATAAATAATGTCGTCTCTGGATTTAAAGAGATTCAGTCAACCATTGAGGTGAAGTATGGCAAATTGCAATCTGTTCTTGCTCAAGTGAAATTAGAGACCGAAACTCTGTCACTGAAGAAGGACAAAATTGATAACCTTCTCGTTCAGGAAGAAAGAATGGGAGCAAAACTTAGGGAATTTGCTAGGGTTTCTGAGGAGGAAGCTAAAGGATACAGGGAAATAATCAAATTAAGAAGAAGTTTGATGTCATCTATACTGAAGTCCGGGGAGGATAAACTGAGACTTACAAACAATGAGGAAAAGCTCTCTGGAGAAGTGAAATTGTTTCAGCAGGAAGTTTCTGCTGCCAGAGCTTCCTTGCAGGAACTATCTTCAAGAAAGTCGAGCATCCAGCAAGACATAGCATCCTTCAAGCAGAGGATTATTTTCATAGATAAGAGAGTTCCAGAACTTGAAGCGGAAAAAAAAGTTGCTACTGCTGCAAGGAATTTCAAGGAGGCTGCCCGAATAGCTAGTGAGGCTAAATCACTGTGTGTTGAGAAAGAGAATATCCAGATGGGAATGGATACAGCCACTTCGAATCTTGAAAAGCTTGAGGAAGAAATTAAAGGCACCCTTGATAAATTGCAGGAGACTGAGGGAATGATCTTATTGAAGGAGAAAGAGTTAGCAATGGCTAGATATCAAAAGCTACTTTTGACAGCTGCTACTGCTAGAGCTGAAAAAGCAGCTGCCCAAGAAATGGGTGATGTCGAAGAAGCTAATCTCCTGCTTGCAGAAGCTGAGGCTGCAGACTGTGAAGCTGAGAGAATTCGATCAACATACAATTTCAAGGCGGAAGACATTTCAAATTTACGGAAAGATTTGATTTCAATGGACCTTGTATCAATTCTTGATAAAAAGCAATTGGAAAAATTAGTTGTCACTTCATCTATTTAG

Protein sequence

>Msa0832340

MKKATSLHSKEMEQWFSSSEALEVKKMELEIESHFISEAHTELNNNIELSIEDDKKEKEILCKRKSVLMDELEKLLALVKQKEKEIADNDSDLKAVEHKINNVVSGFKEIQSTIEVKYGKLQSVLAQVKLETETLSLKKDKIDNLLVQEERMGAKLREFARVSEEEAKGYREIIKLRRSLMSSILKSGEDKLRLTNNEEKLSGEVKLFQQEVSAARASLQELSSRKSSIQQDIASFKQRIIFIDKRVPELEAEKKVATAARNFKEAARIASEAKSLCVEKENIQMGMDTATSNLEKLEEEIKGTLDKLQETEGMILLKEKELAMARYQKLLLTAATARAEKAAAQEMGDVEEANLLLAEAEAADCEAERIRSTYNFKAEDISNLRKDLISMDLVSILDKKQLEKLVVTSSI*