AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132570 MtrunA17_Chr5g0399331 95.374 562 26 0 30 591 22 583 0.0 1085
Msa1132570 MtrunA17_Chr5g0403231 30.580 569 310 13 87 588 73 623 2.31e-77 257
Msa1132570 MtrunA17_Chr8g0373901 30.192 573 323 13 84 588 62 625 2.98e-73 246
Msa1132570 MtrunA17_Chr4g0034351 31.858 339 198 5 271 587 289 616 8.61e-51 185
Msa1132570 MtrunA17_Chr3g0133631 26.266 533 350 14 79 584 53 569 5.07e-44 165
Msa1132570 MtrunA17_Chr8g0374741 26.699 412 273 9 183 583 202 595 2.27e-42 160
Msa1132570 MtrunA17_Chr1g0153951 25.455 550 348 14 79 583 13 545 2.30e-39 151
Msa1132570 MtrunA17_Chr5g0402501 29.747 316 195 7 273 582 249 543 5.04e-38 147
Msa1132570 MtrunA17_Chr5g0435281 27.826 345 202 7 273 583 178 509 4.01e-37 144
Msa1132570 MtrunA17_Chr4g0028651 32.189 233 147 4 356 584 469 694 7.24e-35 140
Msa1132570 MtrunA17_Chr8g0351061 24.632 272 185 7 309 572 360 619 1.60e-19 92.4
Msa1132570 MtrunA17_Chr3g0115381 31.176 170 102 3 345 512 535 691 9.36e-17 84.0
Msa1132570 MtrunA17_Chr1g0163291 26.482 253 152 10 309 547 338 570 1.51e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132570 AT5G47380.1 56.574 578 230 11 23 590 27 593 0.0 617
Msa1132570 AT5G47380.4 56.574 578 230 11 23 590 27 593 0.0 616
Msa1132570 AT5G47380.5 58.791 546 203 11 56 590 3 537 0.0 608
Msa1132570 AT5G47380.2 54.622 476 196 10 23 489 27 491 1.74e-161 471
Msa1132570 AT5G47380.3 55.085 472 192 10 23 485 27 487 2.92e-161 470
Msa1132570 AT5G66600.7 30.373 563 312 17 84 586 15 557 6.79e-68 230
Msa1132570 AT5G66600.2 30.714 560 308 18 84 583 49 588 1.01e-67 231
Msa1132570 AT5G66600.14 30.714 560 308 18 84 583 69 608 2.17e-67 230
Msa1132570 AT5G66600.1 30.714 560 308 18 84 583 69 608 2.17e-67 230
Msa1132570 AT5G66600.4 30.714 560 308 18 84 583 69 608 2.17e-67 230
Msa1132570 AT5G66600.9 30.714 560 308 18 84 583 69 608 2.17e-67 230
Msa1132570 AT5G66600.3 30.714 560 308 18 84 583 69 608 2.17e-67 230
Msa1132570 AT2G23700.1 33.333 339 201 8 265 588 378 706 2.88e-53 194
Msa1132570 AT1G16750.1 27.648 557 286 13 79 583 36 527 1.64e-51 186
Msa1132570 AT3G13000.1 31.593 364 197 8 268 586 192 548 5.78e-49 179
Msa1132570 AT3G13000.3 31.593 364 197 8 268 586 221 577 7.35e-49 179
Msa1132570 AT3G13000.2 31.593 364 197 8 268 586 221 577 7.35e-49 179
Msa1132570 AT5G66600.12 30.349 458 252 14 84 486 69 514 9.64e-47 172
Msa1132570 AT5G66600.11 30.349 458 252 14 84 486 69 514 9.64e-47 172
Msa1132570 AT5G66600.6 30.349 458 252 14 84 486 69 514 9.64e-47 172
Msa1132570 AT5G66600.13 30.349 458 252 14 84 486 69 514 9.64e-47 172
Msa1132570 AT1G21060.2 29.449 472 268 12 132 583 65 491 1.39e-46 171
Msa1132570 AT1G21060.1 29.449 472 268 12 132 583 77 503 1.82e-46 171
Msa1132570 AT3G18900.6 30.818 318 202 5 267 583 149 449 2.26e-46 169
Msa1132570 AT3G18900.3 30.818 318 202 5 267 583 149 449 2.26e-46 169
Msa1132570 AT3G18900.4 30.818 318 202 5 267 583 230 530 4.96e-46 170
Msa1132570 AT3G18900.5 30.818 318 202 5 267 583 225 525 5.15e-46 170
Msa1132570 AT5G42690.2 26.964 560 328 16 66 584 20 539 2.43e-43 163
Msa1132570 AT5G42690.4 26.964 560 328 16 66 584 20 539 2.43e-43 163
Msa1132570 AT5G42690.1 27.143 560 326 17 66 584 20 538 5.36e-43 162
Msa1132570 AT5G42690.5 26.937 542 320 15 79 584 11 512 7.87e-43 161
Msa1132570 AT1G76620.1 26.749 486 283 15 132 588 80 521 1.03e-41 158
Msa1132570 AT5G42690.3 27.063 521 311 14 93 584 7 487 1.50e-40 154
Msa1132570 AT2G39690.5 25.046 543 330 14 84 584 17 524 1.57e-40 155
Msa1132570 AT4G37080.2 29.206 315 191 5 274 583 321 608 1.60e-40 156
Msa1132570 AT4G37080.3 29.206 315 191 5 274 583 321 608 1.60e-40 156
Msa1132570 AT4G37080.1 29.206 315 191 5 274 583 308 595 2.08e-40 155
Msa1132570 AT2G39690.2 29.070 344 212 7 262 584 85 417 5.54e-40 151
Msa1132570 AT2G39690.1 25.046 543 329 14 84 584 17 523 7.03e-40 153
Msa1132570 AT1G43020.1 34.599 237 146 3 352 588 212 439 1.81e-39 150
Msa1132570 AT2G39690.4 29.429 333 203 7 273 584 177 498 3.07e-39 150
Msa1132570 AT2G39690.8 29.070 344 211 7 262 584 166 497 9.20e-39 149
Msa1132570 AT5G66600.15 29.756 410 226 12 84 438 15 417 1.94e-38 147
Msa1132570 AT5G66600.10 29.756 410 226 12 84 438 69 471 4.04e-38 147
Msa1132570 AT5G66600.8 29.756 410 226 12 84 438 69 471 4.04e-38 147
Msa1132570 AT5G66600.5 29.756 410 226 12 84 438 69 471 4.04e-38 147
Msa1132570 AT3G12540.2 26.087 368 223 8 241 584 162 504 2.37e-30 125
Msa1132570 AT3G12540.1 26.146 371 219 9 241 584 229 571 2.81e-30 125
Msa1132570 AT3G18900.1 32.877 219 132 4 267 484 230 434 1.56e-29 122
Msa1132570 AT1G16750.2 27.068 399 194 9 79 434 36 380 7.91e-29 119
Msa1132570 AT5G60720.1 26.923 364 201 11 273 584 340 690 6.85e-27 116
Msa1132570 AT1G76620.2 26.562 384 213 14 132 486 80 423 2.70e-23 103
Msa1132570 AT3G18900.2 34.302 172 102 3 267 437 230 391 6.10e-23 101
Msa1132570 AT1G43020.3 39.860 143 80 3 352 494 212 348 1.76e-22 99.8
Msa1132570 AT2G39690.6 24.490 441 258 13 84 484 17 422 2.23e-22 100
Msa1132570 AT2G39690.7 24.661 442 255 14 84 484 17 421 7.40e-22 99.0
Msa1132570 AT4G37080.4 28.440 218 124 5 274 486 321 511 3.73e-18 88.2
Msa1132570 AT3G11920.1 27.626 257 146 10 309 547 365 599 1.23e-17 87.0
Msa1132570 AT2G39690.3 31.492 181 103 5 273 434 177 355 5.15e-17 83.6
Msa1132570 AT4G08550.1 22.822 241 151 5 345 572 415 633 1.55e-14 77.4
Msa1132570 AT4G08550.2 22.822 241 151 5 345 572 469 687 1.89e-14 77.0
Msa1132570 AT1G43020.4 49.057 53 27 0 352 404 212 264 8.43e-11 63.5
Msa1132570 AT1G43020.5 49.057 53 27 0 352 404 212 264 9.21e-11 63.9
Msa1132570 AT1G43020.2 49.057 53 27 0 352 404 212 264 9.21e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCTTTCCACCAATTT+AGG 0.083497 7_3:-85438102 None:intergenic
ACAACTCATCAACTCAAATT+TGG 0.154234 7_3:+85437678 Msa1132570:CDS
TTTATTCATACATGTTAATT+AGG 0.216708 7_3:-85438495 None:intergenic
TTCACTTTCTTCCTCTCTTC+AGG 0.258470 7_3:+85432944 Msa1132570:five_prime_UTR
CACTTTCAGCAAGGGCTTCT+AGG 0.260634 7_3:+85433753 Msa1132570:CDS
GTTTATGTTAACGTTATCTA+AGG 0.264155 7_3:-85438428 None:intergenic
AAAATCTTTCCACCAATTTA+GGG 0.275012 7_3:-85438101 None:intergenic
AAGAAATGTATGAATGTAAA+TGG 0.276295 7_3:-85432982 None:intergenic
TAAAGTCATTCTCCCTAAAT+TGG 0.293856 7_3:+85438089 Msa1132570:CDS
GAAAGGCCATGATGAATTTC+CGG 0.303535 7_3:+85433433 Msa1132570:CDS
ACAAAATATCGCTTGCTCTA+TGG 0.305387 7_3:-85437025 None:intergenic
GATTTGAAGAATAGAATCTT+TGG 0.308526 7_3:+85435300 Msa1132570:CDS
CAGCCTCCTTAGAGAGCTTT+GGG 0.308831 7_3:-85436530 None:intergenic
GGCCTTACAGTTCAAAATTC+AGG 0.310105 7_3:+85438259 Msa1132570:CDS
AAACATATATCAAAATATTA+AGG 0.324112 7_3:-85438465 None:intergenic
TATTGTCCCGGGAGCATAAC+TGG 0.329322 7_3:+85438321 Msa1132570:three_prime_UTR
TGCTTGGGCACTGGTGTAGA+TGG 0.356648 7_3:-85435625 None:intergenic
TCCAACCTTGGTGGTGGAAT+CGG 0.364526 7_3:-85435382 None:intergenic
CCAGCCTCCTTAGAGAGCTT+TGG 0.378177 7_3:-85436531 None:intergenic
CAACTCATCAACTCAAATTT+GGG 0.385152 7_3:+85437679 Msa1132570:CDS
CCTTTGCACCGGAGCATTGT+CGG 0.387970 7_3:+85437735 Msa1132570:CDS
TTTAAATCATAGAGCATCCT+TGG 0.388582 7_3:+85433826 Msa1132570:CDS
ACACAGACACTTTGCTTCTC+AGG 0.399323 7_3:+85434589 Msa1132570:CDS
GAATTCCCCAAAGCTCTCTA+AGG 0.401712 7_3:+85436524 Msa1132570:CDS
GTCTGCTTTGCCCTTTGCAC+CGG 0.407525 7_3:+85437724 Msa1132570:CDS
ATCTCCTCAGAAAGCCTGCT+TGG 0.408102 7_3:-85435641 None:intergenic
CGGAGCATTGTCGGATCCTA+TGG 0.417025 7_3:+85437744 Msa1132570:CDS
GTATGGCAACTATGTATTGC+TGG 0.425160 7_3:+85435672 Msa1132570:CDS
TGATATCCTTGGATGGATAA+TGG 0.425516 7_3:+85438149 Msa1132570:CDS
ATTTGAAGAATAGAATCTTT+GGG 0.427166 7_3:+85435301 Msa1132570:CDS
CCAACCTTGGTGGTGGAATC+GGG 0.435103 7_3:-85435381 None:intergenic
TTCATCATGGCCTTTCCCTA+TGG 0.436112 7_3:-85433426 None:intergenic
AATCTGCAGTGGAAATATCT+TGG 0.440218 7_3:+85435813 Msa1132570:CDS
TCCGAACACCTCGCCTTGGA+CGG 0.446044 7_3:+85437049 Msa1132570:CDS
CTCGACACAAACGATCTAAC+AGG 0.446669 7_3:+85433111 Msa1132570:CDS
CAGAAAGCCTGCTTGGGCAC+TGG 0.447555 7_3:-85435634 None:intergenic
ATCTTGCTCGAGAGAGCAAT+GGG 0.449689 7_3:+85434539 Msa1132570:CDS
CATTCTTGTTTATACAATTG+AGG 0.451686 7_3:-85433799 None:intergenic
GTGGAGGACCTTGACAATAT+CGG 0.456089 7_3:-85435737 None:intergenic
CCCGTCCAAGGCGAGGTGTT+CGG 0.458315 7_3:-85437050 None:intergenic
TCTCCTCAGAAAGCCTGCTT+GGG 0.468909 7_3:-85435640 None:intergenic
AAAGCGCTTGAAATTATGCT+TGG 0.470906 7_3:-85435222 None:intergenic
AATTGAGTTGCTTGAAGAAG+AGG 0.472868 7_3:+85435068 Msa1132570:CDS
TTCTCATGCTTCTTACGCCA+TGG 0.474043 7_3:+85435859 Msa1132570:CDS
AAGGGTGAATGTCAGTCAAA+TGG 0.474180 7_3:+85436341 Msa1132570:CDS
TAGATCGTTTGTGTCGAGTT+TGG 0.477859 7_3:-85433106 None:intergenic
ATCAGCATTGATGATATCCT+TGG 0.479859 7_3:+85438138 Msa1132570:CDS
AATACTGTGTCGAGGCTGTA+TGG 0.480500 7_3:-85435765 None:intergenic
CGACAATGCTCCGGTGCAAA+GGG 0.482820 7_3:-85437734 None:intergenic
TGACAGGCATATTTAGCATA+TGG 0.485474 7_3:+85436502 Msa1132570:intron
AACTTTGTTCAGAAGGTGGC+CGG 0.487946 7_3:-85435152 None:intergenic
CTCATTCAAAACAAGAATCA+AGG 0.495075 7_3:+85435193 Msa1132570:CDS
TAAGAGCTTGCAGAGGTCGC+AGG 0.500429 7_3:-85435266 None:intergenic
AGCATGTTCTTGCTATGTAC+AGG 0.501029 7_3:+85435106 Msa1132570:CDS
TGTCTGTAGAAACTCTCTCT+TGG 0.502312 7_3:-85438043 None:intergenic
CTTACGCCATGGACAACTAC+AGG 0.505664 7_3:+85435870 Msa1132570:CDS
CTAGAAGCCCTTGCTGAAAG+TGG 0.511951 7_3:-85433752 None:intergenic
TTCTAGTCGAACAGCTCGAA+AGG 0.512430 7_3:+85436322 Msa1132570:CDS
CCGACAATGCTCCGGTGCAA+AGG 0.512555 7_3:-85437735 None:intergenic
GGCAAAGCAGACAAGTGGTT+GGG 0.513513 7_3:-85437713 None:intergenic
CCGAACACCTCGCCTTGGAC+GGG 0.515400 7_3:+85437050 Msa1132570:CDS
AGGCTGTATGGCATTGGTGG+AGG 0.516474 7_3:-85435753 None:intergenic
ATTGTAGCTAAAAGTTTACT+CGG 0.519041 7_3:+85437990 Msa1132570:intron
CCAAAGCTCTCTAAGGAGGC+TGG 0.520350 7_3:+85436531 Msa1132570:CDS
CCGGGAGCATAACTGGTTTG+AGG 0.521061 7_3:+85438328 Msa1132570:three_prime_UTR
TGTTTCCGAACACCTCGCCT+TGG 0.521123 7_3:+85437045 Msa1132570:CDS
GTGTTGTGTCTGCTGCCCTT+AGG 0.521903 7_3:+85437635 Msa1132570:CDS
ATAACTGGTTTGAGGAAGCT+AGG 0.522544 7_3:+85438336 Msa1132570:three_prime_UTR
CATCTTGCTCGAGAGAGCAA+TGG 0.523172 7_3:+85434538 Msa1132570:CDS
AAGCGCTTGAAATTATGCTT+GGG 0.524292 7_3:-85435221 None:intergenic
CCTCAAACCAGTTATGCTCC+CGG 0.526559 7_3:-85438328 None:intergenic
AGTCATTCTCCCTAAATTGG+TGG 0.528274 7_3:+85438092 Msa1132570:CDS
TAGCAAGAACATGCTGTTCG+CGG 0.529545 7_3:-85435098 None:intergenic
AAGCTATGATCTTATTGTCC+CGG 0.530581 7_3:+85438309 Msa1132570:exon
AATATATCCAACCTTGGTGG+TGG 0.539919 7_3:-85435388 None:intergenic
AGCTATGATCTTATTGTCCC+GGG 0.544073 7_3:+85438310 Msa1132570:exon
ATTCTACTTTAACTTTGAAG+CGG 0.544363 7_3:+85438517 Msa1132570:three_prime_UTR
AATGATGCAGAAGGAAGTGC+TGG 0.544961 7_3:+85433053 Msa1132570:CDS
CATAGGATCCGACAATGCTC+CGG 0.547311 7_3:-85437743 None:intergenic
AAGAGCTTGCAGAGGTCGCA+GGG 0.547732 7_3:-85435265 None:intergenic
TCGAAATTCTCAAGAGGCGG+TGG 0.548479 7_3:+85433392 Msa1132570:CDS
GTATCTTACATCTTGTTCCA+AGG 0.548890 7_3:-85433843 None:intergenic
TGAGGAGATGGTGAAGTGTA+TGG 0.551680 7_3:+85435655 Msa1132570:CDS
AGTCATGCTCCTTTATCAAG+TGG 0.553004 7_3:+85435327 Msa1132570:CDS
AAGCAGGCTTTCTGAGGAGA+TGG 0.553899 7_3:+85435643 Msa1132570:CDS
CTCAAACCAGTTATGCTCCC+GGG 0.558635 7_3:-85438327 None:intergenic
ACACTAGAACTTTGTTCAGA+AGG 0.560400 7_3:-85435159 None:intergenic
TTCGAATCTAAGAGAAGAGC+TGG 0.561093 7_3:+85438014 Msa1132570:CDS
AAGAGTGTGGGCCTGAAGAG+AGG 0.561545 7_3:-85432955 None:intergenic
GCATGGATTTCTCCTTCTGT+AGG 0.561780 7_3:-85434514 None:intergenic
CAATTGAGGTTGTCATGCAA+TGG 0.561881 7_3:-85433785 None:intergenic
AATGTATGAATGTAAATGGA+AGG 0.566808 7_3:-85432978 None:intergenic
TCGAGGCTGTATGGCATTGG+TGG 0.567060 7_3:-85435756 None:intergenic
GGCGTCGCCACTTTCAGCAA+GGG 0.571422 7_3:+85433745 Msa1132570:intron
GTGATAAAGTACTTGAGGCT+CGG 0.575278 7_3:-85434562 None:intergenic
GGGCAAAGCAGACAAGTGGT+TGG 0.579650 7_3:-85437714 None:intergenic
AACGAACCTGTAGTTGTCCA+TGG 0.583760 7_3:-85435876 None:intergenic
AGGCGTCGCCACTTTCAGCA+AGG 0.584433 7_3:+85433744 Msa1132570:intron
GAAGCAAAGTGTCTGTGTCC+AGG 0.591180 7_3:-85434584 None:intergenic
CTGTTCTTGTAAATCTGCAG+TGG 0.591557 7_3:+85435802 Msa1132570:CDS
ATCTACACCAGTGCCCAAGC+AGG 0.591863 7_3:+85435627 Msa1132570:CDS
GTGCCCAAGCAGGCTTTCTG+AGG 0.593720 7_3:+85435637 Msa1132570:CDS
GTGCAGGCTGCTTACAACAT+TGG 0.594552 7_3:+85436979 Msa1132570:intron
AACTTACCGGAAATTCATCA+TGG 0.594598 7_3:-85433439 None:intergenic
CAGGCTGCTTACAACATTGG+CGG 0.595259 7_3:+85436982 Msa1132570:intron
GCCTCAAGTACTTTATCACC+TGG 0.597172 7_3:+85434566 Msa1132570:CDS
AACAAATGAGTACCCGTCCA+AGG 0.597530 7_3:-85437062 None:intergenic
AGTCGTCTCAGATCATAGAA+TGG 0.602234 7_3:+85438235 Msa1132570:CDS
TCCAGGTGATAAAGTACTTG+AGG 0.602772 7_3:-85434567 None:intergenic
TCTAGTCGAACAGCTCGAAA+GGG 0.605265 7_3:+85436323 Msa1132570:CDS
GTGTCGAGGCTGTATGGCAT+TGG 0.605760 7_3:-85435759 None:intergenic
AAATACTACCTTGTGAAACA+AGG 0.613394 7_3:-85436554 None:intergenic
AACTCGAAATTCTCAAGAGG+CGG 0.616701 7_3:+85433389 Msa1132570:CDS
CTAGAACTTTGTTCAGAAGG+TGG 0.619959 7_3:-85435156 None:intergenic
TTCTGAACAAAGTTCTAGTG+TGG 0.620122 7_3:+85435161 Msa1132570:CDS
CTGTCCACGCCGAAAACAGT+AGG 0.620191 7_3:+85435711 Msa1132570:CDS
GCATTGATGATATCCTTGGA+TGG 0.631536 7_3:+85438142 Msa1132570:CDS
TCTCTCGAGCAAGATGCGCA+TGG 0.633218 7_3:-85434531 None:intergenic
GCCTCGACACAGTATTGTAG+AGG 0.637071 7_3:+85435772 Msa1132570:CDS
ATGAGTACCCGTCCAAGGCG+AGG 0.641672 7_3:-85437057 None:intergenic
TTCCCCAAAGCTCTCTAAGG+AGG 0.642648 7_3:+85436527 Msa1132570:CDS
CGTAATATATCCAACCTTGG+TGG 0.644617 7_3:-85435391 None:intergenic
TCCTCTACAATACTGTGTCG+AGG 0.646627 7_3:-85435773 None:intergenic
GAGCTTGCAGAGGTCGCAGG+GGG 0.648286 7_3:-85435263 None:intergenic
CAAAGGGCAAAGCAGACAAG+TGG 0.655584 7_3:-85437718 None:intergenic
GCTGCCCTTAGGAAGAAAAG+TGG 0.661083 7_3:+85437646 Msa1132570:CDS
AGGAACTCGAAATTCTCAAG+AGG 0.663545 7_3:+85433386 Msa1132570:CDS
GTAGGTCACCGATATTGTCA+AGG 0.668766 7_3:+85435729 Msa1132570:CDS
GCTACAGCTACACCTACAGA+AGG 0.670545 7_3:+85434502 Msa1132570:CDS
GTAAATGGAAGGAAGAGTGT+GGG 0.673445 7_3:-85432967 None:intergenic
ATAATGATGAATGATGCAGA+AGG 0.674072 7_3:+85433044 Msa1132570:exon
TTTGAAATAAGAGCTTGCAG+AGG 0.679884 7_3:-85435273 None:intergenic
GAGGCTGGCCTTGTTTCACA+AGG 0.680836 7_3:+85436546 Msa1132570:CDS
CGTCTCAGATCATAGAATGG+CGG 0.692691 7_3:+85438238 Msa1132570:CDS
AGAGCTTGCAGAGGTCGCAG+GGG 0.707036 7_3:-85435264 None:intergenic
TGTAAATGGAAGGAAGAGTG+TGG 0.707204 7_3:-85432968 None:intergenic
AGCCTCCTTAGAGAGCTTTG+GGG 0.739142 7_3:-85436529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATAAAATATATTTAG+AGG - chr7_3:85437225-85437244 None:intergenic 10.0%
!!! CTAAATATATTTTATTGTTT+TGG + chr7_3:85437225-85437244 Msa1132570:intron 10.0%
!! AAACATATATCAAAATATTA+AGG - chr7_3:85438468-85438487 None:intergenic 10.0%
!!! ACTATGATATTTAAGATTAT+AGG + chr7_3:85433491-85433510 Msa1132570:intron 15.0%
!! TTAACTCAAAATTGAAAAAA+CGG + chr7_3:85435449-85435468 Msa1132570:intron 15.0%
!! ATATAATATTATACTACAGA+TGG + chr7_3:85435477-85435496 Msa1132570:intron 15.0%
!!! ATTTTATTGAAACTTAAGAA+GGG + chr7_3:85436656-85436675 Msa1132570:intron 15.0%
!!! TAACTTGTTTATTCAATTAT+CGG + chr7_3:85436751-85436770 Msa1132570:intron 15.0%
!! TTTATTCATACATGTTAATT+AGG - chr7_3:85438498-85438517 None:intergenic 15.0%
!! AAGAAATGTATGAATGTAAA+TGG - chr7_3:85432985-85433004 None:intergenic 20.0%
!! CTAAAAAAAAATGAAAACTC+TGG + chr7_3:85434030-85434049 Msa1132570:intron 20.0%
!!! TTACTTTACTTTTTTTTAGG+TGG - chr7_3:85434264-85434283 None:intergenic 20.0%
!!! CCATTACTTTACTTTTTTTT+AGG - chr7_3:85434267-85434286 None:intergenic 20.0%
!! CCTAAAAAAAAGTAAAGTAA+TGG + chr7_3:85434264-85434283 Msa1132570:intron 20.0%
!! ATTTAATCATTTCCATGTAT+AGG + chr7_3:85434332-85434351 Msa1132570:intron 20.0%
!! TCAAAAAAATATCTATGAGT+AGG + chr7_3:85434698-85434717 Msa1132570:intron 20.0%
!!! CAATCAGTATTTAAAATTTC+AGG - chr7_3:85434924-85434943 None:intergenic 20.0%
!!! CTGAAATTTTAAATACTGAT+TGG + chr7_3:85434922-85434941 Msa1132570:intron 20.0%
!!! TAATATTTTCATGAAAGCTA+TGG + chr7_3:85434968-85434987 Msa1132570:intron 20.0%
!!! TAAGTCTTTTGTCTAAAAAA+GGG - chr7_3:85435040-85435059 None:intergenic 20.0%
!!! TTAAGTCTTTTGTCTAAAAA+AGG - chr7_3:85435041-85435060 None:intergenic 20.0%
!! ATTTGAAGAATAGAATCTTT+GGG + chr7_3:85435301-85435320 Msa1132570:CDS 20.0%
!!! GGAAAAGAAAAAGTTTATTT+TGG + chr7_3:85435348-85435367 Msa1132570:CDS 20.0%
!!! AAGAAAAAGTTTATTTTGGA+AGG + chr7_3:85435352-85435371 Msa1132570:CDS 20.0%
!! CTTTGCATATAATTTCAAAA+CGG + chr7_3:85435899-85435918 Msa1132570:intron 20.0%
!! AAAGAATTGTCTAATAAAAG+TGG - chr7_3:85436112-85436131 None:intergenic 20.0%
!!! TTTATTAGACAATTCTTTTC+TGG + chr7_3:85436114-85436133 Msa1132570:intron 20.0%
!!! GTTTATATCTACATTCTTTT+TGG + chr7_3:85436256-85436275 Msa1132570:intron 20.0%
!! AACTTATATATGCTGAAAAT+TGG - chr7_3:85436464-85436483 None:intergenic 20.0%
!!! GATTTTATTGAAACTTAAGA+AGG + chr7_3:85436655-85436674 Msa1132570:intron 20.0%
!! AATTGAATAAACAAGTTACT+TGG - chr7_3:85436749-85436768 None:intergenic 20.0%
!! AATGTATGTATGTACATTTA+CGG - chr7_3:85437109-85437128 None:intergenic 20.0%
!! AATTATGTTTACAAGAACAT+AGG - chr7_3:85437363-85437382 None:intergenic 20.0%
!! AATATCCAAAAGTTAACTTA+AGG - chr7_3:85437484-85437503 None:intergenic 20.0%
!! AAATAAGAGAAAATTACCAT+AGG - chr7_3:85437763-85437782 None:intergenic 20.0%
! AATGTATGAATGTAAATGGA+AGG - chr7_3:85432981-85433000 None:intergenic 25.0%
!!! TGTTTTTTTAAGTGCTTGTT+TGG + chr7_3:85433198-85433217 Msa1132570:intron 25.0%
!! CATTCTTGTTTATACAATTG+AGG - chr7_3:85433802-85433821 None:intergenic 25.0%
! CAAGATGTAAGATACATATA+TGG + chr7_3:85433851-85433870 Msa1132570:intron 25.0%
! TAACTCATTCTTAGTTATCT+TGG - chr7_3:85433936-85433955 None:intergenic 25.0%
!! ATGAGTTAATTTTTGCTACT+TGG + chr7_3:85433948-85433967 Msa1132570:intron 25.0%
! TGTGTTTCACTAAAACAATT+TGG + chr7_3:85434122-85434141 Msa1132570:intron 25.0%
!! AGTCTGAAATTACTATATTG+TGG + chr7_3:85434168-85434187 Msa1132570:intron 25.0%
!! GTCTGAAATTACTATATTGT+GGG + chr7_3:85434169-85434188 Msa1132570:intron 25.0%
! TTTCACTTAAGATACTTCTA+AGG - chr7_3:85434238-85434257 None:intergenic 25.0%
! AAGATAACTGTAGATAGTAT+AGG + chr7_3:85434399-85434418 Msa1132570:intron 25.0%
!!! TAATTTGACATTTGCTATTC+AGG + chr7_3:85434612-85434631 Msa1132570:intron 25.0%
! TTCAAATGTTAAAAGAATGC+AGG - chr7_3:85434652-85434671 None:intergenic 25.0%
!! AAATGAAAGCTTACACATTT+TGG - chr7_3:85434757-85434776 None:intergenic 25.0%
! TGTAAGCTTTCATTTCAATT+TGG + chr7_3:85434762-85434781 Msa1132570:intron 25.0%
! GCTAATTCTAATGTAAAGAA+TGG + chr7_3:85434860-85434879 Msa1132570:intron 25.0%
!!! ATTTTAAATACTGATTGGCA+AGG + chr7_3:85434927-85434946 Msa1132570:intron 25.0%
!!! TTTTAAATACTGATTGGCAA+GGG + chr7_3:85434928-85434947 Msa1132570:intron 25.0%
! GAAAATATTATGTTGTGCAA+TGG - chr7_3:85434958-85434977 None:intergenic 25.0%
! GATTTGAAGAATAGAATCTT+TGG + chr7_3:85435300-85435319 Msa1132570:CDS 25.0%
!! TTTTCTTTTCCACTTGATAA+AGG - chr7_3:85435339-85435358 None:intergenic 25.0%
! ATGCATCTATAAATAAGCTA+AGG + chr7_3:85435965-85435984 Msa1132570:intron 25.0%
!!! ACTATTTTGAACTAGAACAA+AGG - chr7_3:85436157-85436176 None:intergenic 25.0%
! AAATTGGTAAATCAAAACCA+TGG - chr7_3:85436448-85436467 None:intergenic 25.0%
! TTAGATAACATCTTCATCTA+AGG - chr7_3:85436629-85436648 None:intergenic 25.0%
! CATTGAGAAAAATCAGTATA+AGG - chr7_3:85436866-85436885 None:intergenic 25.0%
!!! ACTGATTTTTCTCAATGATA+CGG + chr7_3:85436869-85436888 Msa1132570:intron 25.0%
! ATGTATGTATGTACATTTAC+GGG - chr7_3:85437108-85437127 None:intergenic 25.0%
!! TAATGGTGGAATATATTGAT+CGG + chr7_3:85437185-85437204 Msa1132570:intron 25.0%
! AATATATTAATGTCTTCCTG+CGG - chr7_3:85437285-85437304 None:intergenic 25.0%
! ATTGTAGCTAAAAGTTTACT+CGG + chr7_3:85437990-85438009 Msa1132570:intron 25.0%
! AAAATCTTTCCACCAATTTA+GGG - chr7_3:85438104-85438123 None:intergenic 25.0%
! GTTTATGTTAACGTTATCTA+AGG - chr7_3:85438431-85438450 None:intergenic 25.0%
ATAATGATGAATGATGCAGA+AGG + chr7_3:85433044-85433063 Msa1132570:exon 30.0%
!! TATTTTTCAGTGCTTCTGAT+AGG + chr7_3:85433366-85433385 Msa1132570:intron 30.0%
GCATTATAGAAAGAACTTAC+CGG - chr7_3:85433455-85433474 None:intergenic 30.0%
!!! TATAGGCTTGTTTGTTTTAG+CGG + chr7_3:85433508-85433527 Msa1132570:intron 30.0%
!!! AAGCTAGCTTTTAAAAACCA+CGG + chr7_3:85433561-85433580 Msa1132570:intron 30.0%
! ATAGTCTGTGTTTGTTAAAG+CGG - chr7_3:85433623-85433642 None:intergenic 30.0%
! TTTAAATCATAGAGCATCCT+TGG + chr7_3:85433826-85433845 Msa1132570:CDS 30.0%
AGTTGAACAGAATAGTTTCT+AGG - chr7_3:85433904-85433923 None:intergenic 30.0%
TTCTTAGTTATCTTGGTCTA+CGG - chr7_3:85433929-85433948 None:intergenic 30.0%
TTTACCTTCTTGAACAAGAT+TGG + chr7_3:85433981-85434000 Msa1132570:intron 30.0%
CTAATTTCTTTCCCTTGTTA+AGG - chr7_3:85434073-85434092 None:intergenic 30.0%
ATCAGTAAAATACTATGCCA+TGG - chr7_3:85434447-85434466 None:intergenic 30.0%
!!! CATAGTATTTTACTGATTCC+CGG + chr7_3:85434450-85434469 Msa1132570:intron 30.0%
GTTGAGACATAAACCATTAT+TGG + chr7_3:85434725-85434744 Msa1132570:intron 30.0%
! TTGGTTCTTCATTGATAAAC+TGG + chr7_3:85434781-85434800 Msa1132570:intron 30.0%
TACATTAGAATTAGCTCCTT+CGG - chr7_3:85434855-85434874 None:intergenic 30.0%
ACGAGTCTCTTTATGATTAT+CGG - chr7_3:85434900-85434919 None:intergenic 30.0%
CTCATTCAAAACAAGAATCA+AGG + chr7_3:85435193-85435212 Msa1132570:CDS 30.0%
ATACGTAATATATCCAACCT+TGG - chr7_3:85435397-85435416 None:intergenic 30.0%
AACAAGCAACTAGAAACATT+GGG - chr7_3:85435420-85435439 None:intergenic 30.0%
AAACAAGCAACTAGAAACAT+TGG - chr7_3:85435421-85435440 None:intergenic 30.0%
TTAAACATATGCCTAAGTGT+CGG + chr7_3:85435924-85435943 Msa1132570:intron 30.0%
ATAATTGAATTCCGACACTT+AGG - chr7_3:85435938-85435957 None:intergenic 30.0%
CAAACAGAGAATTAATCTCA+AGG - chr7_3:85436001-85436020 None:intergenic 30.0%
CTTGAGATTAATTCTCTGTT+TGG + chr7_3:85435999-85436018 Msa1132570:intron 30.0%
! TAGTAGTTCCTTGGTAATAT+TGG + chr7_3:85436041-85436060 Msa1132570:intron 30.0%
AAATACTACCTTGTGAAACA+AGG - chr7_3:85436557-85436576 None:intergenic 30.0%
AAAGCTTGTCAAGAATACTT+TGG - chr7_3:85436699-85436718 None:intergenic 30.0%
TTTACTGTGACAAAAAGTCT+AGG + chr7_3:85436716-85436735 Msa1132570:intron 30.0%
AAGAAATTCCTGCATTTACA+AGG + chr7_3:85436780-85436799 Msa1132570:intron 30.0%
CATGTCAAAGAAAGTTATCT+TGG - chr7_3:85436832-85436851 None:intergenic 30.0%
GAAAAATCAGTATAAGGCTA+TGG - chr7_3:85436860-85436879 None:intergenic 30.0%
AATGTGCAGCTTGATTAAAT+TGG + chr7_3:85437310-85437329 Msa1132570:intron 30.0%
TTTACATTCTATAGTCCAAG+CGG - chr7_3:85437401-85437420 None:intergenic 30.0%
TTAACTTAAGGTCCTAATGA+AGG - chr7_3:85437472-85437491 None:intergenic 30.0%
! TAGGACCTTAAGTTAACTTT+TGG + chr7_3:85437476-85437495 Msa1132570:intron 30.0%
ACAACTCATCAACTCAAATT+TGG + chr7_3:85437678-85437697 Msa1132570:CDS 30.0%
CAACTCATCAACTCAAATTT+GGG + chr7_3:85437679-85437698 Msa1132570:CDS 30.0%
TTTGTAGTTTGAATATGACC+AGG + chr7_3:85437788-85437807 Msa1132570:intron 30.0%
TAACTAACATTCACATTTCC+TGG - chr7_3:85437809-85437828 None:intergenic 30.0%
TAAAGTCATTCTCCCTAAAT+TGG + chr7_3:85438089-85438108 Msa1132570:CDS 30.0%
GAAAATCTTTCCACCAATTT+AGG - chr7_3:85438105-85438124 None:intergenic 30.0%
! TACCTGAATTTTGAACTGTA+AGG - chr7_3:85438264-85438283 None:intergenic 30.0%
CTCAATTTGTCTAGCATGTT+TGG - chr7_3:85433281-85433300 None:intergenic 35.0%
CAAACATGCTAGACAAATTG+AGG + chr7_3:85433279-85433298 Msa1132570:intron 35.0%
AACTTACCGGAAATTCATCA+TGG - chr7_3:85433442-85433461 None:intergenic 35.0%
! TGTGAGTTGAGATGATTCAT+TGG + chr7_3:85433703-85433722 Msa1132570:intron 35.0%
GTATCTTACATCTTGTTCCA+AGG - chr7_3:85433846-85433865 None:intergenic 35.0%
CAAACCAATCTTGTTCAAGA+AGG - chr7_3:85433988-85434007 None:intergenic 35.0%
!! CTTGAACAAGATTGGTTTGT+AGG + chr7_3:85433989-85434008 Msa1132570:intron 35.0%
!! CAAGATTGGTTTGTAGGAAA+AGG + chr7_3:85433995-85434014 Msa1132570:intron 35.0%
ACCATATTCCTTGTCAACTT+CGG + chr7_3:85434294-85434313 Msa1132570:intron 35.0%
GATGTTTCAGAACCTATACA+TGG - chr7_3:85434347-85434366 None:intergenic 35.0%
!! TGTATAGGTTCTGAAACATC+TGG + chr7_3:85434347-85434366 Msa1132570:intron 35.0%
!! GTATAGGTTCTGAAACATCT+GGG + chr7_3:85434348-85434367 Msa1132570:intron 35.0%
ACATCTGGGAAGAAAAATGT+TGG + chr7_3:85434362-85434381 Msa1132570:intron 35.0%
CATCTGGGAAGAAAAATGTT+GGG + chr7_3:85434363-85434382 Msa1132570:intron 35.0%
!! GACATTTGCTATTCAGGTAA+TGG + chr7_3:85434618-85434637 Msa1132570:intron 35.0%
GAAGATGCTAAGATATGAGT+AGG + chr7_3:85434669-85434688 Msa1132570:intron 35.0%
AAAATATCTATGAGTAGGCG+TGG + chr7_3:85434703-85434722 Msa1132570:intron 35.0%
!! ATTTTGGCAAAGGCCAATAA+TGG - chr7_3:85434741-85434760 None:intergenic 35.0%
!! AAGCTTACACATTTTGGCAA+AGG - chr7_3:85434751-85434770 None:intergenic 35.0%
ACATTCACAACTAAGCTGTT+AGG + chr7_3:85434821-85434840 Msa1132570:intron 35.0%
TCCTATAAGTTCATGTTGTG+TGG + chr7_3:85434992-85435011 Msa1132570:intron 35.0%
TCCACACAACATGAACTTAT+AGG - chr7_3:85434996-85435015 None:intergenic 35.0%
! AATTGAGTTGCTTGAAGAAG+AGG + chr7_3:85435068-85435087 Msa1132570:CDS 35.0%
!! TTTTTGAAGAGTGTGTTAGC+CGG + chr7_3:85435133-85435152 Msa1132570:CDS 35.0%
ACACTAGAACTTTGTTCAGA+AGG - chr7_3:85435162-85435181 None:intergenic 35.0%
! TTCTGAACAAAGTTCTAGTG+TGG + chr7_3:85435161-85435180 Msa1132570:CDS 35.0%
!!! GATTCTTGTTTTGAATGAGC+TGG - chr7_3:85435192-85435211 None:intergenic 35.0%
AAGCGCTTGAAATTATGCTT+GGG - chr7_3:85435224-85435243 None:intergenic 35.0%
! AAAGCGCTTGAAATTATGCT+TGG - chr7_3:85435225-85435244 None:intergenic 35.0%
! TTTGAAATAAGAGCTTGCAG+AGG - chr7_3:85435276-85435295 None:intergenic 35.0%
TAGGATTAAGGTGAGAATGT+TGG - chr7_3:85435543-85435562 None:intergenic 35.0%
TCTCACCTTAATCCTATGTT+AGG + chr7_3:85435547-85435566 Msa1132570:intron 35.0%
GTGAACCTAACATAGGATTA+AGG - chr7_3:85435555-85435574 None:intergenic 35.0%
!!! TCTTTTAAAGCTCGCAATAC+AGG - chr7_3:85435605-85435624 None:intergenic 35.0%
AATCTGCAGTGGAAATATCT+TGG + chr7_3:85435813-85435832 Msa1132570:CDS 35.0%
CTTAACAACTAGTAGTTCCT+TGG + chr7_3:85436032-85436051 Msa1132570:intron 35.0%
CAATCATGCCAATATTACCA+AGG - chr7_3:85436052-85436071 None:intergenic 35.0%
TTCAAAATAGTCAGACTACC+AGG + chr7_3:85436166-85436185 Msa1132570:intron 35.0%
ATAATATGAAGAAGCTGTCC+TGG - chr7_3:85436187-85436206 None:intergenic 35.0%
TGACAGGCATATTTAGCATA+TGG + chr7_3:85436502-85436521 Msa1132570:intron 35.0%
! TTGTTGTTCCTTGTAAATGC+AGG - chr7_3:85436791-85436810 None:intergenic 35.0%
AGAAAGTTATCTTGGAACGA+AGG - chr7_3:85436824-85436843 None:intergenic 35.0%
ACAAAATATCGCTTGCTCTA+TGG - chr7_3:85437028-85437047 None:intergenic 35.0%
CATGTATGAACGAAGTCTAA+TGG + chr7_3:85437168-85437187 Msa1132570:intron 35.0%
GATATGCTTAGACCTTCATT+AGG + chr7_3:85437457-85437476 Msa1132570:intron 35.0%
!! TTCACCACTTTTCTTCCTAA+GGG - chr7_3:85437653-85437672 None:intergenic 35.0%
! TGATGCATTGATGAATCACA+CGG + chr7_3:85437880-85437899 Msa1132570:intron 35.0%
!! ATCAGCATTGATGATATCCT+TGG + chr7_3:85438138-85438157 Msa1132570:CDS 35.0%
TGATATCCTTGGATGGATAA+TGG + chr7_3:85438149-85438168 Msa1132570:CDS 35.0%
! CATTTTCCATTATCCATCCA+AGG - chr7_3:85438158-85438177 None:intergenic 35.0%
! ATTCAGGTACATGTTTTCGA+AGG + chr7_3:85438275-85438294 Msa1132570:CDS 35.0%
AAGCTATGATCTTATTGTCC+CGG + chr7_3:85438309-85438328 Msa1132570:exon 35.0%
TTCACTTTCTTCCTCTCTTC+AGG + chr7_3:85432944-85432963 Msa1132570:five_prime_UTR 40.0%
! GTAAATGGAAGGAAGAGTGT+GGG - chr7_3:85432970-85432989 None:intergenic 40.0%
TGTAAATGGAAGGAAGAGTG+TGG - chr7_3:85432971-85432990 None:intergenic 40.0%
TAGATCGTTTGTGTCGAGTT+TGG - chr7_3:85433109-85433128 None:intergenic 40.0%
GTTTGGTATCGTACTGAGTT+TGG + chr7_3:85433215-85433234 Msa1132570:intron 40.0%
AGGAACTCGAAATTCTCAAG+AGG + chr7_3:85433386-85433405 Msa1132570:CDS 40.0%
AACTCGAAATTCTCAAGAGG+CGG + chr7_3:85433389-85433408 Msa1132570:CDS 40.0%
GAAAGGCCATGATGAATTTC+CGG + chr7_3:85433433-85433452 Msa1132570:CDS 40.0%
CTTCACATAAAACGCCAGTT+TGG - chr7_3:85433544-85433563 None:intergenic 40.0%
! TTTTGTGACATGCACTGTGT+TGG + chr7_3:85433655-85433674 Msa1132570:intron 40.0%
! GGTTTTGCCATGATTTGAAC+AGG + chr7_3:85433724-85433743 Msa1132570:intron 40.0%
CAATTGAGGTTGTCATGCAA+TGG - chr7_3:85433788-85433807 None:intergenic 40.0%
! GGTTTGTAGGAAAAGGCATA+TGG + chr7_3:85434002-85434021 Msa1132570:intron 40.0%
TCCGAAGTTGACAAGGAATA+TGG - chr7_3:85434298-85434317 None:intergenic 40.0%
CATATCAACATAGGAACTCC+GGG - chr7_3:85434471-85434490 None:intergenic 40.0%
GCATATCAACATAGGAACTC+CGG - chr7_3:85434472-85434491 None:intergenic 40.0%
GAGTTCCTATGTTGATATGC+AGG + chr7_3:85434472-85434491 Msa1132570:intron 40.0%
CTCAACCTGCATATCAACAT+AGG - chr7_3:85434480-85434499 None:intergenic 40.0%
! GTGATAAAGTACTTGAGGCT+CGG - chr7_3:85434565-85434584 None:intergenic 40.0%
! TCCAGGTGATAAAGTACTTG+AGG - chr7_3:85434570-85434589 None:intergenic 40.0%
! AGCATGTTCTTGCTATGTAC+AGG + chr7_3:85435106-85435125 Msa1132570:CDS 40.0%
CTAGAACTTTGTTCAGAAGG+TGG - chr7_3:85435159-85435178 None:intergenic 40.0%
AGTCATGCTCCTTTATCAAG+TGG + chr7_3:85435327-85435346 Msa1132570:CDS 40.0%
AATATATCCAACCTTGGTGG+TGG - chr7_3:85435391-85435410 None:intergenic 40.0%
CGTAATATATCCAACCTTGG+TGG - chr7_3:85435394-85435413 None:intergenic 40.0%
ACTTCTCGTGAACCTAACAT+AGG - chr7_3:85435562-85435581 None:intergenic 40.0%
GTATGGCAACTATGTATTGC+TGG + chr7_3:85435672-85435691 Msa1132570:CDS 40.0%
! TATCGGTGACCTACTGTTTT+CGG - chr7_3:85435723-85435742 None:intergenic 40.0%
CTGTTCTTGTAAATCTGCAG+TGG + chr7_3:85435802-85435821 Msa1132570:CDS 40.0%
CTGTTCGACTAGAATTCTGA+AGG - chr7_3:85436316-85436335 None:intergenic 40.0%
AAGGGTGAATGTCAGTCAAA+TGG + chr7_3:85436341-85436360 Msa1132570:CDS 40.0%
GTGATCGAAAAATTGCGTTC+TGG + chr7_3:85436367-85436386 Msa1132570:CDS 40.0%
CACACTCATATGAATCACCA+TGG + chr7_3:85436428-85436447 Msa1132570:intron 40.0%
TGAGTACAATTGTGTAGTGC+AGG + chr7_3:85436963-85436982 Msa1132570:intron 40.0%
CACACATGTGAATTGTTGTC+AGG + chr7_3:85437139-85437158 Msa1132570:intron 40.0%
GTATGAACGAAGTCTAATGG+TGG + chr7_3:85437171-85437190 Msa1132570:intron 40.0%
!! GTTTAGTTTGTTTCTCCGCT+TGG + chr7_3:85437383-85437402 Msa1132570:intron 40.0%
! TGCGTTTTTATCAAACGCAG+TGG + chr7_3:85437605-85437624 Msa1132570:intron 40.0%
!! CTTCACCACTTTTCTTCCTA+AGG - chr7_3:85437654-85437673 None:intergenic 40.0%
TTCGAATCTAAGAGAAGAGC+TGG + chr7_3:85438014-85438033 Msa1132570:CDS 40.0%
TGTCTGTAGAAACTCTCTCT+TGG - chr7_3:85438046-85438065 None:intergenic 40.0%
AGTCATTCTCCCTAAATTGG+TGG + chr7_3:85438092-85438111 Msa1132570:CDS 40.0%
! GCATTGATGATATCCTTGGA+TGG + chr7_3:85438142-85438161 Msa1132570:CDS 40.0%
AGTCGTCTCAGATCATAGAA+TGG + chr7_3:85438235-85438254 Msa1132570:CDS 40.0%
GGCCTTACAGTTCAAAATTC+AGG + chr7_3:85438259-85438278 Msa1132570:CDS 40.0%
AGCTATGATCTTATTGTCCC+GGG + chr7_3:85438310-85438329 Msa1132570:exon 40.0%
!! ATAACTGGTTTGAGGAAGCT+AGG + chr7_3:85438336-85438355 Msa1132570:three_prime_UTR 40.0%
! AATGATGCAGAAGGAAGTGC+TGG + chr7_3:85433053-85433072 Msa1132570:CDS 45.0%
CTCGACACAAACGATCTAAC+AGG + chr7_3:85433111-85433130 Msa1132570:CDS 45.0%
! GTGGTGTTTTGCGTTCCATA+GGG + chr7_3:85433411-85433430 Msa1132570:CDS 45.0%
! GTTTTGCGTTCCATAGGGAA+AGG + chr7_3:85433416-85433435 Msa1132570:CDS 45.0%
TTCATCATGGCCTTTCCCTA+TGG - chr7_3:85433429-85433448 None:intergenic 45.0%
GCGGTGAAAATTGTCCAAAC+TGG + chr7_3:85433527-85433546 Msa1132570:intron 45.0%
! GTCTGTGTTTGTTAAAGCGG+TGG - chr7_3:85433620-85433639 None:intergenic 45.0%
CCTAGAAGAGGCCTTAACAA+GGG + chr7_3:85434059-85434078 Msa1132570:intron 45.0%
! GTTTTCCTGTACGATGACCA+TGG + chr7_3:85434427-85434446 Msa1132570:intron 45.0%
GCATGGATTTCTCCTTCTGT+AGG - chr7_3:85434517-85434536 None:intergenic 45.0%
ATCTTGCTCGAGAGAGCAAT+GGG + chr7_3:85434539-85434558 Msa1132570:CDS 45.0%
GCCTCAAGTACTTTATCACC+TGG + chr7_3:85434566-85434585 Msa1132570:CDS 45.0%
ACACAGACACTTTGCTTCTC+AGG + chr7_3:85434589-85434608 Msa1132570:CDS 45.0%
! GCTATTCAGGTAATGGCCAA+CGG + chr7_3:85434625-85434644 Msa1132570:intron 45.0%
! CTATTCAGGTAATGGCCAAC+GGG + chr7_3:85434626-85434645 Msa1132570:intron 45.0%
TTAAAAGAATGCAGGCCCGT+TGG - chr7_3:85434644-85434663 None:intergenic 45.0%
CTGTTAGGAGTTAGAACCGA+AGG + chr7_3:85434836-85434855 Msa1132570:intron 45.0%
TAGCAAGAACATGCTGTTCG+CGG - chr7_3:85435101-85435120 None:intergenic 45.0%
AACTTTGTTCAGAAGGTGGC+CGG - chr7_3:85435155-85435174 None:intergenic 45.0%
TGAGGAGATGGTGAAGTGTA+TGG + chr7_3:85435655-85435674 Msa1132570:CDS 45.0%
GTAGGTCACCGATATTGTCA+AGG + chr7_3:85435729-85435748 Msa1132570:CDS 45.0%
GTGGAGGACCTTGACAATAT+CGG - chr7_3:85435740-85435759 None:intergenic 45.0%
AATACTGTGTCGAGGCTGTA+TGG - chr7_3:85435768-85435787 None:intergenic 45.0%
TCCTCTACAATACTGTGTCG+AGG - chr7_3:85435776-85435795 None:intergenic 45.0%
TTCTCATGCTTCTTACGCCA+TGG + chr7_3:85435859-85435878 Msa1132570:CDS 45.0%
AACGAACCTGTAGTTGTCCA+TGG - chr7_3:85435879-85435898 None:intergenic 45.0%
TTCTAGTCGAACAGCTCGAA+AGG + chr7_3:85436322-85436341 Msa1132570:CDS 45.0%
TCTAGTCGAACAGCTCGAAA+GGG + chr7_3:85436323-85436342 Msa1132570:CDS 45.0%
! AACTTCCTTTTCCTGCTGAC+AGG + chr7_3:85436486-85436505 Msa1132570:intron 45.0%
ATATGCCTGTCAGCAGGAAA+AGG - chr7_3:85436494-85436513 None:intergenic 45.0%
TGCTAAATATGCCTGTCAGC+AGG - chr7_3:85436500-85436519 None:intergenic 45.0%
GAATTCCCCAAAGCTCTCTA+AGG + chr7_3:85436524-85436543 Msa1132570:CDS 45.0%
AACAAATGAGTACCCGTCCA+AGG - chr7_3:85437065-85437084 None:intergenic 45.0%
CGTCTCAGATCATAGAATGG+CGG + chr7_3:85438238-85438257 Msa1132570:CDS 45.0%
!! AAAAAATAAAATAAAAATCA+AGG - chr7_3:85433681-85433700 None:intergenic 5.0%
!! TAACTATTTATTTAAAAAAA+AGG - chr7_3:85436913-85436932 None:intergenic 5.0%
TCGAAATTCTCAAGAGGCGG+TGG + chr7_3:85433392-85433411 Msa1132570:CDS 50.0%
! GGTGGTGTTTTGCGTTCCAT+AGG + chr7_3:85433410-85433429 Msa1132570:CDS 50.0%
AGTGCAAATACCGCGTTACG+AGG - chr7_3:85433596-85433615 None:intergenic 50.0%
CTAGAAGCCCTTGCTGAAAG+TGG - chr7_3:85433755-85433774 None:intergenic 50.0%
CACTTTCAGCAAGGGCTTCT+AGG + chr7_3:85433753-85433772 Msa1132570:CDS 50.0%
! CTCTGGAAGTAGCCTAGAAG+AGG + chr7_3:85434047-85434066 Msa1132570:intron 50.0%
GCCTAGAAGAGGCCTTAACA+AGG + chr7_3:85434058-85434077 Msa1132570:intron 50.0%
CCCTTGTTAAGGCCTCTTCT+AGG - chr7_3:85434062-85434081 None:intergenic 50.0%
ACGCATCTCCGAAGTTGACA+AGG - chr7_3:85434305-85434324 None:intergenic 50.0%
CTATGCCATGGTCATCGTAC+AGG - chr7_3:85434435-85434454 None:intergenic 50.0%
GCTACAGCTACACCTACAGA+AGG + chr7_3:85434502-85434521 Msa1132570:CDS 50.0%
CATCTTGCTCGAGAGAGCAA+TGG + chr7_3:85434538-85434557 Msa1132570:CDS 50.0%
! GAAGCAAAGTGTCTGTGTCC+AGG - chr7_3:85434587-85434606 None:intergenic 50.0%
! TTTTCCCGATTCCACCACCA+AGG + chr7_3:85435377-85435396 Msa1132570:CDS 50.0%
!! TCCAACCTTGGTGGTGGAAT+CGG - chr7_3:85435385-85435404 None:intergenic 50.0%
TCTCCTCAGAAAGCCTGCTT+GGG - chr7_3:85435643-85435662 None:intergenic 50.0%
ATCTCCTCAGAAAGCCTGCT+TGG - chr7_3:85435644-85435663 None:intergenic 50.0%
! AAGCAGGCTTTCTGAGGAGA+TGG + chr7_3:85435643-85435662 Msa1132570:CDS 50.0%
GCCTCGACACAGTATTGTAG+AGG + chr7_3:85435772-85435791 Msa1132570:CDS 50.0%
CTTACGCCATGGACAACTAC+AGG + chr7_3:85435870-85435889 Msa1132570:CDS 50.0%
! TTCCCCAAAGCTCTCTAAGG+AGG + chr7_3:85436527-85436546 Msa1132570:CDS 50.0%
AGCCTCCTTAGAGAGCTTTG+GGG - chr7_3:85436532-85436551 None:intergenic 50.0%
CAGCCTCCTTAGAGAGCTTT+GGG - chr7_3:85436533-85436552 None:intergenic 50.0%
GTGCAGGCTGCTTACAACAT+TGG + chr7_3:85436979-85436998 Msa1132570:intron 50.0%
CAGGCTGCTTACAACATTGG+CGG + chr7_3:85436982-85437001 Msa1132570:intron 50.0%
CACTGATACTATGTTGCCGC+AGG + chr7_3:85437266-85437285 Msa1132570:intron 50.0%
GCTGCCCTTAGGAAGAAAAG+TGG + chr7_3:85437646-85437665 Msa1132570:CDS 50.0%
GGCAAAGCAGACAAGTGGTT+GGG - chr7_3:85437716-85437735 None:intergenic 50.0%
CAAAGGGCAAAGCAGACAAG+TGG - chr7_3:85437721-85437740 None:intergenic 50.0%
CATAGGATCCGACAATGCTC+CGG - chr7_3:85437746-85437765 None:intergenic 50.0%
! TATTGTCCCGGGAGCATAAC+TGG + chr7_3:85438321-85438340 Msa1132570:three_prime_UTR 50.0%
CTCAAACCAGTTATGCTCCC+GGG - chr7_3:85438330-85438349 None:intergenic 50.0%
CCTCAAACCAGTTATGCTCC+CGG - chr7_3:85438331-85438350 None:intergenic 50.0%
! AAGAGTGTGGGCCTGAAGAG+AGG - chr7_3:85432958-85432977 None:intergenic 55.0%
! TTACGAGGCACTTTCTGCCG+TGG - chr7_3:85433581-85433600 None:intergenic 55.0%
!! GCAGAAAGTGCCTCGTAACG+CGG + chr7_3:85433583-85433602 Msa1132570:intron 55.0%
GGCGACGCCTGTTCAAATCA+TGG - chr7_3:85433734-85433753 None:intergenic 55.0%
TCTCTCGAGCAAGATGCGCA+TGG - chr7_3:85434534-85434553 None:intergenic 55.0%
AAGAGCTTGCAGAGGTCGCA+GGG - chr7_3:85435268-85435287 None:intergenic 55.0%
TAAGAGCTTGCAGAGGTCGC+AGG - chr7_3:85435269-85435288 None:intergenic 55.0%
!! CCAACCTTGGTGGTGGAATC+GGG - chr7_3:85435384-85435403 None:intergenic 55.0%
!! TGCTTGGGCACTGGTGTAGA+TGG - chr7_3:85435628-85435647 None:intergenic 55.0%
ATCTACACCAGTGCCCAAGC+AGG + chr7_3:85435627-85435646 Msa1132570:CDS 55.0%
CTGTCCACGCCGAAAACAGT+AGG + chr7_3:85435711-85435730 Msa1132570:CDS 55.0%
! GTGACCTACTGTTTTCGGCG+TGG - chr7_3:85435718-85435737 None:intergenic 55.0%
!! AGGCTGTATGGCATTGGTGG+AGG - chr7_3:85435756-85435775 None:intergenic 55.0%
! TCGAGGCTGTATGGCATTGG+TGG - chr7_3:85435759-85435778 None:intergenic 55.0%
GTGTCGAGGCTGTATGGCAT+TGG - chr7_3:85435762-85435781 None:intergenic 55.0%
CCAGCCTCCTTAGAGAGCTT+TGG - chr7_3:85436534-85436553 None:intergenic 55.0%
! CCAAAGCTCTCTAAGGAGGC+TGG + chr7_3:85436531-85436550 Msa1132570:CDS 55.0%
!! GAGGCTGGCCTTGTTTCACA+AGG + chr7_3:85436546-85436565 Msa1132570:CDS 55.0%
TGTTTCCGAACACCTCGCCT+TGG + chr7_3:85437045-85437064 Msa1132570:CDS 55.0%
GTGTTGTGTCTGCTGCCCTT+AGG + chr7_3:85437635-85437654 Msa1132570:CDS 55.0%
GGGCAAAGCAGACAAGTGGT+TGG - chr7_3:85437717-85437736 None:intergenic 55.0%
GTCTGCTTTGCCCTTTGCAC+CGG + chr7_3:85437724-85437743 Msa1132570:CDS 55.0%
CGACAATGCTCCGGTGCAAA+GGG - chr7_3:85437737-85437756 None:intergenic 55.0%
!! CCTTTGCACCGGAGCATTGT+CGG + chr7_3:85437735-85437754 Msa1132570:CDS 55.0%
!! CGGAGCATTGTCGGATCCTA+TGG + chr7_3:85437744-85437763 Msa1132570:CDS 55.0%
!! CCGGGAGCATAACTGGTTTG+AGG + chr7_3:85438328-85438347 Msa1132570:three_prime_UTR 55.0%
! AGGCGTCGCCACTTTCAGCA+AGG + chr7_3:85433744-85433763 Msa1132570:intron 60.0%
! GGCGTCGCCACTTTCAGCAA+GGG + chr7_3:85433745-85433764 Msa1132570:intron 60.0%
AGAGCTTGCAGAGGTCGCAG+GGG - chr7_3:85435267-85435286 None:intergenic 60.0%
CCCGATTCCACCACCAAGGT+TGG + chr7_3:85435381-85435400 Msa1132570:intron 60.0%
CAGAAAGCCTGCTTGGGCAC+TGG - chr7_3:85435637-85435656 None:intergenic 60.0%
GTGCCCAAGCAGGCTTTCTG+AGG + chr7_3:85435637-85435656 Msa1132570:CDS 60.0%
TCCGAACACCTCGCCTTGGA+CGG + chr7_3:85437049-85437068 Msa1132570:CDS 60.0%
ATGAGTACCCGTCCAAGGCG+AGG - chr7_3:85437060-85437079 None:intergenic 60.0%
CCGACAATGCTCCGGTGCAA+AGG - chr7_3:85437738-85437757 None:intergenic 60.0%
GAGCTTGCAGAGGTCGCAGG+GGG - chr7_3:85435266-85435285 None:intergenic 65.0%
! CCCGTCCAAGGCGAGGTGTT+CGG - chr7_3:85437053-85437072 None:intergenic 65.0%
CCGAACACCTCGCCTTGGAC+GGG + chr7_3:85437050-85437069 Msa1132570:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85432944 85438538 85432944 ID=Msa1132570;Name=Msa1132570
chr7_3 mRNA 85432944 85438538 85432944 ID=Msa1132570-mRNA-1;Parent=Msa1132570;Name=Msa1132570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|1|11|221|591
chr7_3 exon 85432944 85433132 85432944 ID=Msa1132570-mRNA-1:exon:25540;Parent=Msa1132570-mRNA-1
chr7_3 exon 85433376 85433454 85433376 ID=Msa1132570-mRNA-1:exon:25541;Parent=Msa1132570-mRNA-1
chr7_3 exon 85433746 85433856 85433746 ID=Msa1132570-mRNA-1:exon:25542;Parent=Msa1132570-mRNA-1
chr7_3 exon 85434494 85434610 85434494 ID=Msa1132570-mRNA-1:exon:25543;Parent=Msa1132570-mRNA-1
chr7_3 exon 85435048 85435398 85435048 ID=Msa1132570-mRNA-1:exon:25544;Parent=Msa1132570-mRNA-1
chr7_3 exon 85435569 85435891 85435569 ID=Msa1132570-mRNA-1:exon:25545;Parent=Msa1132570-mRNA-1
chr7_3 exon 85436320 85436419 85436320 ID=Msa1132570-mRNA-1:exon:25546;Parent=Msa1132570-mRNA-1
chr7_3 exon 85436508 85436567 85436508 ID=Msa1132570-mRNA-1:exon:25547;Parent=Msa1132570-mRNA-1
chr7_3 exon 85436985 85437071 85436985 ID=Msa1132570-mRNA-1:exon:25548;Parent=Msa1132570-mRNA-1
chr7_3 exon 85437625 85437765 85437625 ID=Msa1132570-mRNA-1:exon:25549;Parent=Msa1132570-mRNA-1
chr7_3 exon 85437997 85438538 85437997 ID=Msa1132570-mRNA-1:exon:25550;Parent=Msa1132570-mRNA-1
chr7_3 five_prime_UTR 85432944 85433046 85432944 ID=Msa1132570-mRNA-1:five_prime_utr;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85433047 85433132 85433047 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85433376 85433454 85433376 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85433746 85433856 85433746 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85434494 85434610 85434494 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85435048 85435398 85435048 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85435569 85435891 85435569 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85436320 85436419 85436320 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85436508 85436567 85436508 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85436985 85437071 85436985 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85437625 85437765 85437625 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 CDS 85437997 85438317 85437997 ID=Msa1132570-mRNA-1:cds;Parent=Msa1132570-mRNA-1
chr7_3 three_prime_UTR 85438318 85438538 85438318 ID=Msa1132570-mRNA-1:three_prime_utr;Parent=Msa1132570-mRNA-1
Gene Sequence

>Msa1132570

ATGATGAATGATGCAGAAGGAAGTGCTGGATATGTTGTTAACTCTGCGAGTTCTCGACACCAAACTCGACACAAACGATCTAACAGTGCTTCTGATAGGAACTCGAAATTCTCAAGAGGCGGTGGTGTTTTGCGTTCCATAGGGAAAGGCCATGATGAATTTCCGGCGTCGCCACTTTCAGCAAGGGCTTCTAGGATACAAACTCCATTGCATGACAACCTCAATTGTATAAACAAGAATGCTTCTTTAAATCATAGAGCATCCTTGGAACAAGATGTTGAGCAGCTACAGCTACACCTACAGAAGGAGAAATCCATGCGCATCTTGCTCGAGAGAGCAATGGGCCGAGCCTCAAGTACTTTATCACCTGGACACAGACACTTTGCTTCTCAGACAAAAGACTTAATTACTGAAATTGAGTTGCTTGAAGAAGAGGTTACAAGCCGCGAACAGCATGTTCTTGCTATGTACAGGAATATTTTTGAAGAGTGTGTTAGCCGGCCACCTTCTGAACAAAGTTCTAGTGTGGCTTCACCAGCTCATTCAAAACAAGAATCAAGGAAGCACCCAAGCATAATTTCAAGCGCTTTCTGTTCATCAAAAAACTTCCCCCTGCGACCTCTGCAAGCTCTTATTTCAAATAACGATTTGAAGAATAGAATCTTTGGGTCAAGTCATGCTCCTTTATCAAGTGGAAAAGAAAAAGTTTATTTTGGAAGGACTTTTCCCGATTCCACCACCAAGGTTCACGAGAAGTTTTCTTCGATTGAGAAAGCTCCTGTATTGCGAGCTTTAAAAGACCATCTACACCAGTGCCCAAGCAGGCTTTCTGAGGAGATGGTGAAGTGTATGGCAACTATGTATTGCTGGCTTCGTAGTGCAAAATCTGTCCACGCCGAAAACAGTAGGTCACCGATATTGTCAAGGTCCTCCACCAATGCCATACAGCCTCGACACAGTATTGTAGAGGATCAAGACTGTTCTTGTAAATCTGCAGTGGAAATATCTTGGATAGCTACACGAAAACGTCATTCTTCTCATGCTTCTTACGCCATGGACAACTACAGAATTCTAGTCGAACAGCTCGAAAGGGTGAATGTCAGTCAAATGGAATGTGATCGAAAAATTGCGTTCTGGATCAACATTCATAATGCTCTTGTGATGCATGCATATTTAGCATATGGAATTCCCCAAAGCTCTCTAAGGAGGCTGGCCTTGTTTCACAAGGCTGCTTACAACATTGGCGGTCATATTATAAGTGCAAATACCATAGAGCAAGCGATATTTTGTTTCCGAACACCTCGCCTTGGACGGTGGCTTGAAAGTGTTGTGTCTGCTGCCCTTAGGAAGAAAAGTGGTGAAGAAAGACAACTCATCAACTCAAATTTGGGTATTACTGATTCCCAACCACTTGTCTGCTTTGCCCTTTGCACCGGAGCATTGTCGGATCCTATGCTAAAAGTTTACTCGGCTTCGAATCTAAGAGAAGAGCTGGATGCTTCCAAGAGAGAGTTTCTACAGACAAATGTAGTTGTGAAGAAATCTAGTAAAGTCATTCTCCCTAAATTGGTGGAAAGATTTTCAAGAGAAGCATCAATCAGCATTGATGATATCCTTGGATGGATAATGGAAAATGTTGACAAAAAATTACATGACTCAATACAGAAGTGCATTGATCGTAAGTCGAGCAAAAAGTCGTCTCAGATCATAGAATGGCGGCCTTACAGTTCAAAATTCAGGTACATGTTTTCGAAGGATCTAGTAGACAAGCTATGA
Protein sequence

>Msa1132570

MMNDAEGSAGYVVNSASSRHQTRHKRSNSASDRNSKFSRGGGVLRSIGKGHDEFPASPLSARASRIQTPLHDNLNCINKNASLNHRASLEQDVEQLQLHLQKEKSMRILLERAMGRASSTLSPGHRHFASQTKDLITEIELLEEEVTSREQHVLAMYRNIFEECVSRPPSEQSSSVASPAHSKQESRKHPSIISSAFCSSKNFPLRPLQALISNNDLKNRIFGSSHAPLSSGKEKVYFGRTFPDSTTKVHEKFSSIEKAPVLRALKDHLHQCPSRLSEEMVKCMATMYCWLRSAKSVHAENSRSPILSRSSTNAIQPRHSIVEDQDCSCKSAVEISWIATRKRHSSHASYAMDNYRILVEQLERVNVSQMECDRKIAFWINIHNALVMHAYLAYGIPQSSLRRLALFHKAAYNIGGHIISANTIEQAIFCFRTPRLGRWLESVVSAALRKKSGEERQLINSNLGITDSQPLVCFALCTGALSDPMLKVYSASNLREELDASKREFLQTNVVVKKSSKVILPKLVERFSREASISIDDILGWIMENVDKKLHDSIQKCIDRKSSKKSSQIIEWRPYSSKFRYMFSKDLVDKL*