AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0834280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834280 MtrunA17_Chr5g0399331 90.569 562 24 1 30 562 22 583 0.0 1036
Msa0834280 MtrunA17_Chr5g0403231 27.500 640 334 17 19 559 15 623 3.28e-62 216
Msa0834280 MtrunA17_Chr8g0373901 30.321 343 180 6 267 559 292 625 4.05e-46 171
Msa0834280 MtrunA17_Chr4g0034351 28.060 335 187 6 271 558 289 616 4.28e-37 145
Msa0834280 MtrunA17_Chr8g0374741 26.498 317 201 5 269 554 280 595 6.65e-34 136
Msa0834280 MtrunA17_Chr3g0133631 24.105 531 337 14 78 555 52 569 1.74e-33 134
Msa0834280 MtrunA17_Chr5g0402501 28.247 308 181 7 273 553 249 543 2.15e-30 125
Msa0834280 MtrunA17_Chr5g0435281 26.126 333 194 7 273 554 178 509 1.02e-29 122
Msa0834280 MtrunA17_Chr1g0153951 23.748 539 344 15 78 554 12 545 2.23e-26 113
Msa0834280 MtrunA17_Chr4g0028651 27.434 226 138 4 356 555 469 694 2.65e-26 113
Msa0834280 MtrunA17_Chr8g0351061 21.887 265 172 8 309 543 360 619 1.34e-14 77.0
Msa0834280 MtrunA17_Chr3g0115381 29.747 158 91 3 345 483 535 691 8.19e-14 74.7
Msa0834280 MtrunA17_Chr1g0163291 23.333 240 147 8 309 518 338 570 9.07e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0834280 AT5G47380.1 52.076 578 227 12 23 561 27 593 0.0 550
Msa0834280 AT5G47380.4 52.076 578 227 12 23 561 27 593 0.0 549
Msa0834280 AT5G47380.5 53.578 545 204 11 56 561 3 537 0.0 541
Msa0834280 AT5G47380.2 49.160 476 193 11 23 460 27 491 2.38e-135 403
Msa0834280 AT5G47380.3 49.576 472 189 11 23 456 27 487 2.60e-135 403
Msa0834280 AT5G66600.7 28.014 564 297 18 83 557 14 557 3.21e-51 185
Msa0834280 AT5G66600.2 28.014 564 297 18 83 557 48 591 3.76e-51 185
Msa0834280 AT5G66600.14 28.014 564 297 18 83 557 68 611 5.45e-51 185
Msa0834280 AT5G66600.1 28.014 564 297 18 83 557 68 611 5.45e-51 185
Msa0834280 AT5G66600.4 28.014 564 297 18 83 557 68 611 5.45e-51 185
Msa0834280 AT5G66600.9 28.014 564 297 18 83 557 68 611 5.45e-51 185
Msa0834280 AT5G66600.3 28.014 564 297 18 83 557 68 611 5.45e-51 185
Msa0834280 AT2G23700.1 31.657 338 179 9 265 559 378 706 1.91e-41 159
Msa0834280 AT1G16750.1 25.673 557 268 15 79 554 36 527 3.85e-38 147
Msa0834280 AT1G21060.2 28.266 467 251 13 132 554 65 491 4.30e-38 147
Msa0834280 AT1G21060.1 28.266 467 251 13 132 554 77 503 6.58e-38 147
Msa0834280 AT3G13000.1 30.084 359 180 10 268 557 192 548 9.40e-38 147
Msa0834280 AT3G13000.3 30.084 359 180 10 268 557 221 577 1.12e-37 147
Msa0834280 AT3G13000.2 30.084 359 180 10 268 557 221 577 1.12e-37 147
Msa0834280 AT2G39690.5 24.578 533 318 15 83 555 16 524 4.35e-34 136
Msa0834280 AT1G76620.1 25.466 483 264 15 132 559 80 521 4.62e-34 136
Msa0834280 AT2G39690.1 24.060 532 321 13 83 555 16 523 6.43e-34 135
Msa0834280 AT3G18900.6 27.707 314 188 5 267 554 149 449 2.54e-33 132
Msa0834280 AT3G18900.3 27.707 314 188 5 267 554 149 449 2.54e-33 132
Msa0834280 AT4G37080.2 27.124 306 180 4 274 554 321 608 2.67e-33 134
Msa0834280 AT4G37080.3 27.124 306 180 4 274 554 321 608 2.67e-33 134
Msa0834280 AT2G39690.2 28.571 322 191 8 273 555 96 417 2.71e-33 132
Msa0834280 AT4G37080.1 27.124 306 180 4 274 554 308 595 2.97e-33 134
Msa0834280 AT3G18900.5 27.707 314 188 5 267 554 225 525 4.09e-33 133
Msa0834280 AT3G18900.4 27.707 314 188 5 267 554 230 530 4.64e-33 133
Msa0834280 AT2G39690.4 28.571 322 191 8 273 555 177 498 1.37e-32 131
Msa0834280 AT2G39690.8 27.726 321 194 6 273 555 177 497 2.45e-32 130
Msa0834280 AT5G42690.5 25.145 517 307 13 88 555 27 512 2.91e-32 130
Msa0834280 AT5G42690.2 25.145 517 307 13 88 555 54 539 3.39e-32 130
Msa0834280 AT5G42690.4 25.145 517 307 13 88 555 54 539 3.39e-32 130
Msa0834280 AT5G42690.1 25.338 517 305 14 88 555 54 538 5.92e-32 130
Msa0834280 AT5G66600.12 27.706 462 232 16 83 457 68 514 5.80e-31 127
Msa0834280 AT5G66600.11 27.706 462 232 16 83 457 68 514 5.80e-31 127
Msa0834280 AT5G66600.6 27.706 462 232 16 83 457 68 514 5.80e-31 127
Msa0834280 AT5G66600.13 27.706 462 232 16 83 457 68 514 5.80e-31 127
Msa0834280 AT1G43020.1 30.932 236 127 5 352 559 212 439 1.60e-30 124
Msa0834280 AT5G42690.3 25.000 508 309 11 93 555 7 487 3.64e-30 124
Msa0834280 AT5G66600.15 28.831 385 206 13 83 409 14 388 5.49e-28 117
Msa0834280 AT5G66600.10 28.831 385 206 13 83 409 68 442 9.12e-28 117
Msa0834280 AT5G66600.8 28.831 385 206 13 83 409 68 442 9.12e-28 117
Msa0834280 AT5G66600.5 28.831 385 206 13 83 409 68 442 9.12e-28 117
Msa0834280 AT3G12540.1 23.810 357 216 6 241 555 229 571 7.91e-25 108
Msa0834280 AT3G12540.2 23.810 357 216 6 241 555 162 504 8.03e-25 108
Msa0834280 AT5G60720.1 25.568 352 192 12 273 555 340 690 2.40e-20 95.5
Msa0834280 AT1G16750.2 25.134 374 183 9 79 409 36 355 2.23e-19 90.9
Msa0834280 AT3G18900.1 28.372 215 118 4 267 455 230 434 3.52e-17 84.7
Msa0834280 AT2G39690.6 23.898 431 246 14 83 455 16 422 1.39e-16 82.8
Msa0834280 AT2G39690.7 23.256 430 249 12 83 455 16 421 2.38e-16 82.0
Msa0834280 AT1G76620.2 27.931 290 150 11 132 395 80 336 3.22e-16 81.6
Msa0834280 AT3G11920.1 25.911 247 134 9 309 518 365 599 4.86e-15 78.6
Msa0834280 AT3G18900.2 32.143 140 84 3 267 405 230 359 2.51e-14 75.5
Msa0834280 AT1G43020.3 33.803 142 61 5 352 465 212 348 8.18e-14 73.6
Msa0834280 AT4G08550.2 22.973 222 145 6 345 543 469 687 3.38e-12 69.7
Msa0834280 AT4G08550.1 22.973 222 145 6 345 543 415 633 3.43e-12 69.7
Msa0834280 AT4G37080.4 25.359 209 113 4 274 457 321 511 1.42e-11 67.4
Msa0834280 AT1G43020.4 43.333 60 34 0 352 411 212 271 1.61e-11 65.9
Msa0834280 AT1G43020.5 43.333 60 34 0 352 411 212 271 1.92e-11 65.9
Msa0834280 AT1G43020.2 43.333 60 34 0 352 411 212 271 1.92e-11 65.9
Msa0834280 AT2G39690.3 29.487 156 91 4 273 409 177 332 3.85e-11 65.5

Find 127 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCTTTCCACCAATTT+AGG 0.083497 5_4:-7283034 None:intergenic
ACAACTCATCAACTCAAATT+TGG 0.154234 5_4:+7282614 Msa0834280:CDS
TTTATTCATACATGTTAATT+AGG 0.216708 5_4:-7283421 None:intergenic
TTCACTTTCTTCCTCTCTTC+AGG 0.241779 5_4:+7277979 Msa0834280:five_prime_UTR
CACTTTCAGCAAGGGCTTCT+AGG 0.260634 5_4:+7278664 Msa0834280:CDS
GTTTATGTTAACGTTATCTA+AGG 0.264155 5_4:-7283354 None:intergenic
AAAATCTTTCCACCAATTTA+GGG 0.275012 5_4:-7283033 None:intergenic
TAAAGTCATTCTCCCTAAAT+TGG 0.293856 5_4:+7283021 Msa0834280:CDS
GAAAGACCATGATGAATTTC+CGG 0.301095 5_4:+7278479 Msa0834280:CDS
TATTGTCCCTGGAGCATAAC+TGG 0.307570 5_4:+7283253 Msa0834280:three_prime_UTR
GATTTGAAGAATAGAATCTT+TGG 0.308526 5_4:+7280230 Msa0834280:CDS
CAGCCTCCTTAGAGAGCTTT+GGG 0.308831 5_4:-7281461 None:intergenic
GGCCTTACAGTTCAAAATTC+AGG 0.310105 5_4:+7283191 Msa0834280:CDS
AAACATATATCAAAATATTA+AGG 0.324112 5_4:-7283391 None:intergenic
TGCTTGGGCACTGGTGTAGA+TGG 0.356648 5_4:-7280556 None:intergenic
TCCAACCTTGGTGGTGGAAT+CGG 0.364526 5_4:-7280312 None:intergenic
AATGTATGAATGTATGTAAA+TGG 0.376468 5_4:-7278017 None:intergenic
CCAGCCTCCTTAGAGAGCTT+TGG 0.378177 5_4:-7281462 None:intergenic
CAACTCATCAACTCAAATTT+GGG 0.385152 5_4:+7282615 Msa0834280:CDS
CCTTTGCACCGGAGCATTGT+CGG 0.387970 5_4:+7282671 Msa0834280:CDS
ACACAGACACTTTGCTTCTC+AGG 0.399323 5_4:+7279520 Msa0834280:CDS
GAATTCCCCAAAGCTCTCTA+AGG 0.401712 5_4:+7281455 Msa0834280:CDS
GTCTGCTTTGCCCTTTGCAC+CGG 0.407525 5_4:+7282660 Msa0834280:CDS
ATCTCCTCAGAAAGCCTGCT+TGG 0.408102 5_4:-7280572 None:intergenic
TTCAAATCATAGATCATCCT+TGG 0.415834 5_4:+7278737 Msa0834280:CDS
CGGAGCATTGTCGGATCCTA+TGG 0.417025 5_4:+7282680 Msa0834280:CDS
GTATGGCAACTATGTATTGC+TGG 0.425160 5_4:+7280603 Msa0834280:CDS
TGATATCCTTGGATGGATAA+TGG 0.425516 5_4:+7283081 Msa0834280:CDS
ATTTGAAGAATAGAATCTTT+GGG 0.427166 5_4:+7280231 Msa0834280:CDS
TTCTCATGCTTCTTATGCCA+TGG 0.432636 5_4:+7280790 Msa0834280:CDS
CCAACCTTGGTGGTGGAATC+GGG 0.435103 5_4:-7280311 None:intergenic
AATCTGCAGTGGAAATATCT+TGG 0.440218 5_4:+7280744 Msa0834280:CDS
TTCATCATGGTCTTTCCCTA+TGG 0.444687 5_4:-7278472 None:intergenic
CAGAAAGCCTGCTTGGGCAC+TGG 0.447555 5_4:-7280565 None:intergenic
GTGGAGGACCTTGACAATAT+CGG 0.456089 5_4:-7280668 None:intergenic
ATCTTGCTCGAGAGAGCAAT+GGG 0.457766 5_4:+7279470 Msa0834280:CDS
CTCGACACAAACGATCTAAC+AGG 0.464063 5_4:+7278153 Msa0834280:CDS
TCTCCTCAGAAAGCCTGCTT+GGG 0.468909 5_4:-7280571 None:intergenic
AAAGCGCTTGAAATTATGCT+TGG 0.470906 5_4:-7280152 None:intergenic
AATTGAGTTGCTTGAAGAAG+AGG 0.472868 5_4:+7279998 Msa0834280:CDS
AAGGGTGAATGTCAGTCAAA+TGG 0.474180 5_4:+7281272 Msa0834280:CDS
ATCAGCATTGATGATATCCT+TGG 0.479859 5_4:+7283070 Msa0834280:CDS
AATACTGTGTCGAGGCTGTA+TGG 0.480500 5_4:-7280696 None:intergenic
CGACAATGCTCCGGTGCAAA+GGG 0.482820 5_4:-7282670 None:intergenic
TGACAGGCATATTTAGCATA+TGG 0.485474 5_4:+7281433 Msa0834280:intron
AGCTATGATCTTATTGTCCC+TGG 0.485678 5_4:+7283242 Msa0834280:exon
AACTTTGTTCAGAAGGTGGC+CGG 0.487946 5_4:-7280082 None:intergenic
CTCATTCAAAACAAGAATCA+AGG 0.492592 5_4:+7280123 Msa0834280:CDS
CATTCTTGTTTATACAATTG+TGG 0.495606 5_4:-7278710 None:intergenic
TAAGAGCTTGCAGAGGTCGC+AGG 0.500429 5_4:-7280196 None:intergenic
AGCATGTTCTTGCTATGTAC+AGG 0.501029 5_4:+7280036 Msa0834280:CDS
TGTCTGTAGAAACTCTCTCT+TGG 0.502312 5_4:-7282975 None:intergenic
CCTGGAGCATAACTGGTTTG+AGG 0.503301 5_4:+7283260 Msa0834280:three_prime_UTR
CCTCAAACCAGTTATGCTCC+AGG 0.505467 5_4:-7283260 None:intergenic
CTAGAAGCCCTTGCTGAAAG+TGG 0.511951 5_4:-7278663 None:intergenic
CTTATGCCATGGACAACTAC+AGG 0.512327 5_4:+7280801 Msa0834280:CDS
TTCTAGTCGAACAGCTCGAA+AGG 0.512430 5_4:+7281253 Msa0834280:CDS
CCGACAATGCTCCGGTGCAA+AGG 0.512555 5_4:-7282671 None:intergenic
GGCAAAGCAGACAAGTGGTT+GGG 0.513513 5_4:-7282649 None:intergenic
AGGCTGTATGGCATTGGTGG+AGG 0.516474 5_4:-7280684 None:intergenic
ATTGTAGCTAAAAGTTTACT+CGG 0.519041 5_4:+7282922 Msa0834280:intron
CCAAAGCTCTCTAAGGAGGC+TGG 0.520350 5_4:+7281462 Msa0834280:CDS
GTGTTGTGTCTGCTGCCCTT+AGG 0.521903 5_4:+7282571 Msa0834280:CDS
ATAACTGGTTTGAGGAAGCT+AGG 0.522544 5_4:+7283268 Msa0834280:three_prime_UTR
AATATATCCAACCTTGGTGG+TGG 0.523291 5_4:-7280318 None:intergenic
AAGCGCTTGAAATTATGCTT+GGG 0.524292 5_4:-7280151 None:intergenic
AGTCATTCTCCCTAAATTGG+TGG 0.528274 5_4:+7283024 Msa0834280:CDS
TAGCAAGAACATGCTGTTCG+CGG 0.529545 5_4:-7280028 None:intergenic
CTGTTAGATCGTTTGTGTCG+AGG 0.544025 5_4:-7278152 None:intergenic
ATTCTACTTTAACTTTGAAG+CGG 0.544363 5_4:+7283443 Msa0834280:three_prime_UTR
TCGAAATTCTCAAGAGGTGG+TGG 0.546039 5_4:+7278438 Msa0834280:CDS
CATAGGATCCGACAATGCTC+CGG 0.547311 5_4:-7282679 None:intergenic
GCATGGATTTCTCCTTCTGT+AGG 0.547613 5_4:-7279445 None:intergenic
AAGAGCTTGCAGAGGTCGCA+GGG 0.547732 5_4:-7280195 None:intergenic
TGAGGAGATGGTGAAGTGTA+TGG 0.551680 5_4:+7280586 Msa0834280:CDS
AGTCATGCTCCTTTATCAAG+TGG 0.553004 5_4:+7280257 Msa0834280:CDS
AAGCAGGCTTTCTGAGGAGA+TGG 0.553899 5_4:+7280574 Msa0834280:CDS
ACACTAGAACTTTGTTCAGA+AGG 0.560400 5_4:-7280089 None:intergenic
TTCGAATCTAAGAGAAGAGC+TGG 0.561093 5_4:+7282946 Msa0834280:CDS
AAGAGTGTGGGCCTGAAGAG+AGG 0.561545 5_4:-7277990 None:intergenic
TCGAGGCTGTATGGCATTGG+TGG 0.567060 5_4:-7280687 None:intergenic
CATCTTGCTCGAGAGAGCAA+TGG 0.569111 5_4:+7279469 Msa0834280:CDS
GCCTCAAGTACTTTATCACC+TGG 0.569263 5_4:+7279497 Msa0834280:CDS
GGCGTCGCCACTTTCAGCAA+GGG 0.571422 5_4:+7278656 Msa0834280:intron
GTAGCTTACATCTTGTTCCA+AGG 0.571437 5_4:-7278754 None:intergenic
AATGATGCAGAAGCAAGTGC+TGG 0.578562 5_4:+7278095 Msa0834280:CDS
GGGCAAAGCAGACAAGTGGT+TGG 0.579650 5_4:-7282650 None:intergenic
AACGAACCTGTAGTTGTCCA+TGG 0.583760 5_4:-7280807 None:intergenic
AGGCGTCGCCACTTTCAGCA+AGG 0.584433 5_4:+7278655 Msa0834280:intron
TAGATCGTTTGTGTCGAGGT+TGG 0.588184 5_4:-7278148 None:intergenic
GAAGCAAGTGCTGGATATGT+TGG 0.588379 5_4:+7278104 Msa0834280:CDS
GAAGCAAAGTGTCTGTGTCC+AGG 0.591180 5_4:-7279515 None:intergenic
CTGTTCTTGTAAATCTGCAG+TGG 0.591557 5_4:+7280733 Msa0834280:CDS
ATCTACACCAGTGCCCAAGC+AGG 0.591863 5_4:+7280558 Msa0834280:CDS
GTGCCCAAGCAGGCTTTCTG+AGG 0.593720 5_4:+7280568 Msa0834280:CDS
AACTCACCGGAAATTCATCA+TGG 0.594040 5_4:-7278485 None:intergenic
CAATTGTGGTTGTCATGCAA+TGG 0.600527 5_4:-7278696 None:intergenic
AGTCGTCTCAGATCATAGAA+TGG 0.602234 5_4:+7283167 Msa0834280:CDS
TCCAGGTGATAAAGTACTTG+AGG 0.602772 5_4:-7279498 None:intergenic
AACTCGAAATTCTCAAGAGG+TGG 0.603348 5_4:+7278435 Msa0834280:CDS
TCTAGTCGAACAGCTCGAAA+GGG 0.605265 5_4:+7281254 Msa0834280:CDS
GTGTCGAGGCTGTATGGCAT+TGG 0.605760 5_4:-7280690 None:intergenic
CTCAAACCAGTTATGCTCCA+GGG 0.609193 5_4:-7283259 None:intergenic
AAATACTACCTTGTGAAACA+AGG 0.613394 5_4:-7281485 None:intergenic
CTAGAACTTTGTTCAGAAGG+TGG 0.619959 5_4:-7280086 None:intergenic
TTCTGAACAAAGTTCTAGTG+TGG 0.620122 5_4:+7280091 Msa0834280:CDS
CTGTCCACGCCGAAAACAGT+AGG 0.620191 5_4:+7280642 Msa0834280:CDS
TATGAATGTATGTAAATGGA+AGG 0.623602 5_4:-7278013 None:intergenic
CGTAATATATCCAACCTTGG+TGG 0.627989 5_4:-7280321 None:intergenic
GCATTGATGATATCCTTGGA+TGG 0.631536 5_4:+7283074 Msa0834280:CDS
TCTCTCGAGCAAGATGTGCA+TGG 0.633628 5_4:-7279462 None:intergenic
GCCTCGACACAGTATTGTAG+AGG 0.637071 5_4:+7280703 Msa0834280:CDS
TTCCCCAAAGCTCTCTAAGG+AGG 0.642648 5_4:+7281458 Msa0834280:CDS
TCCTCTACAATACTGTGTCG+AGG 0.646627 5_4:-7280704 None:intergenic
GAGCTTGCAGAGGTCGCAGG+GGG 0.648286 5_4:-7280193 None:intergenic
AGGAACTCGAAATTCTCAAG+AGG 0.651294 5_4:+7278432 Msa0834280:CDS
CAAAGGGCAAAGCAGACAAG+TGG 0.655584 5_4:-7282654 None:intergenic
GTAAATGGAAGGAAGAGTGT+GGG 0.660814 5_4:-7278002 None:intergenic
GCTGCCCTTAGGAAGAAAAG+TGG 0.661083 5_4:+7282582 Msa0834280:CDS
GTAGGTCACCGATATTGTCA+AGG 0.668766 5_4:+7280660 Msa0834280:CDS
GCTACAGCTACACCTACAGA+AGG 0.670545 5_4:+7279433 Msa0834280:CDS
TTTGAAATAAGAGCTTGCAG+AGG 0.679884 5_4:-7280203 None:intergenic
GAGGCTGGCCTTGTTTCACA+AGG 0.680836 5_4:+7281477 Msa0834280:CDS
CGTCTCAGATCATAGAATGG+CGG 0.692691 5_4:+7283170 Msa0834280:CDS
TGTAAATGGAAGGAAGAGTG+TGG 0.694573 5_4:-7278003 None:intergenic
AGAGCTTGCAGAGGTCGCAG+GGG 0.707036 5_4:-7280194 None:intergenic
AGCCTCCTTAGAGAGCTTTG+GGG 0.739142 5_4:-7281460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATATTTTCTATATTTTA+AGG + chr5_4:7278905-7278924 Msa0834280:intron 10.0%
!! AAACAATAAAATATATTTAG+AGG - chr5_4:7282160-7282179 None:intergenic 10.0%
!!! CTAAATATATTTTATTGTTT+TGG + chr5_4:7282160-7282179 Msa0834280:intron 10.0%
!! AAACATATATCAAAATATTA+AGG - chr5_4:7283394-7283413 None:intergenic 10.0%
!! TTAACTCAAAATTGAAAAAA+CGG + chr5_4:7280380-7280399 Msa0834280:intron 15.0%
!! ATATAATATTATACTACAGA+TGG + chr5_4:7280408-7280427 Msa0834280:intron 15.0%
!!! ATTTTATTGAAACTTAAGAA+GGG + chr5_4:7281587-7281606 Msa0834280:intron 15.0%
!!! TAACTTGTTTATTCAATTAT+CGG + chr5_4:7281682-7281701 Msa0834280:intron 15.0%
!! TTTATTCATACATGTTAATT+AGG - chr5_4:7283424-7283443 None:intergenic 15.0%
!! AATGTATGAATGTATGTAAA+TGG - chr5_4:7278020-7278039 None:intergenic 20.0%
!! TAACACAAGTTCAATTTAAA+AGG + chr5_4:7278930-7278949 Msa0834280:intron 20.0%
!! AACACAAGTTCAATTTAAAA+GGG + chr5_4:7278931-7278950 Msa0834280:intron 20.0%
!!! AATCTGAAATTACTATATTG+TGG + chr5_4:7279126-7279145 Msa0834280:intron 20.0%
!!! ATCTGAAATTACTATATTGT+GGG + chr5_4:7279127-7279146 Msa0834280:intron 20.0%
!! GAAAAAAAAGTAGAAAGTAA+TGG + chr5_4:7279225-7279244 Msa0834280:intron 20.0%
!!! GATTTAATTCTGAAAAGTAT+AGG + chr5_4:7279330-7279349 Msa0834280:intron 20.0%
!!! ATGAAATTTTAAATACCGAT+TGG + chr5_4:7279852-7279871 Msa0834280:intron 20.0%
!!! TAATATTTTCATGAAAGCTA+TGG + chr5_4:7279898-7279917 Msa0834280:intron 20.0%
!!! TAAGTCTTTTGTCTAAAAAA+GGG - chr5_4:7279970-7279989 None:intergenic 20.0%
!!! TTAAGTCTTTTGTCTAAAAA+AGG - chr5_4:7279971-7279990 None:intergenic 20.0%
!! ATTTGAAGAATAGAATCTTT+GGG + chr5_4:7280231-7280250 Msa0834280:CDS 20.0%
!!! GGAAAAGAAAAAGTTTATTT+TGG + chr5_4:7280278-7280297 Msa0834280:CDS 20.0%
!!! AAGAAAAAGTTTATTTTGGA+AGG + chr5_4:7280282-7280301 Msa0834280:CDS 20.0%
!! CTTTGCATATAATTTCAAAA+CGG + chr5_4:7280830-7280849 Msa0834280:intron 20.0%
!! AAAGAATTGTCTAATAAAAG+TGG - chr5_4:7281043-7281062 None:intergenic 20.0%
!!! TTTATTAGACAATTCTTTTC+TGG + chr5_4:7281045-7281064 Msa0834280:intron 20.0%
!!! GTTTATATCTACATTCTTTT+TGG + chr5_4:7281187-7281206 Msa0834280:intron 20.0%
!! AACTTATATATGCTGAAAAT+TGG - chr5_4:7281395-7281414 None:intergenic 20.0%
!!! GATTTTATTGAAACTTAAGA+AGG + chr5_4:7281586-7281605 Msa0834280:intron 20.0%
!! AATTGAATAAACAAGTTACT+TGG - chr5_4:7281680-7281699 None:intergenic 20.0%
!! AATGTATGTATGTACATTTA+CGG - chr5_4:7282042-7282061 None:intergenic 20.0%
!! AATTATGTTTACAAGAACAT+AGG - chr5_4:7282298-7282317 None:intergenic 20.0%
!! AATATCCAAAAGTTAACTTA+AGG - chr5_4:7282420-7282439 None:intergenic 20.0%
!! AAATAAGAGAAAATTACCAT+AGG - chr5_4:7282699-7282718 None:intergenic 20.0%
!!! TTGATCAACTTTTTAAATTC+AGG - chr5_4:7282884-7282903 None:intergenic 20.0%
! TATGAATGTATGTAAATGGA+AGG - chr5_4:7278016-7278035 None:intergenic 25.0%
!! CATTCTTGTTTATACAATTG+TGG - chr5_4:7278713-7278732 None:intergenic 25.0%
! AATGTGAACTTATGTTATCT+CGG - chr5_4:7278847-7278866 None:intergenic 25.0%
! ACACAAGTTCAATTTAAAAG+GGG + chr5_4:7278932-7278951 Msa0834280:intron 25.0%
! TGTGTTTCACTAAATCAATT+TGG + chr5_4:7279080-7279099 Msa0834280:intron 25.0%
!! AAGGTTTGCTTTATTGATAT+AGG - chr5_4:7279178-7279197 None:intergenic 25.0%
!!! ACTTTCTACTTTTTTTTCCA+TGG - chr5_4:7279223-7279242 None:intergenic 25.0%
!!! TAATTTGACATTTGCTATTC+AGG + chr5_4:7279543-7279562 Msa0834280:intron 25.0%
! CAAAAAAAAAAACTACGAGT+AGG + chr5_4:7279630-7279649 Msa0834280:intron 25.0%
! GCTAATTCTAATGTAAAGAA+TGG + chr5_4:7279792-7279811 Msa0834280:intron 25.0%
! GATTTGAAGAATAGAATCTT+TGG + chr5_4:7280230-7280249 Msa0834280:CDS 25.0%
!! TTTTCTTTTCCACTTGATAA+AGG - chr5_4:7280269-7280288 None:intergenic 25.0%
! ATGCATCTATAAATAAGCTA+AGG + chr5_4:7280896-7280915 Msa0834280:intron 25.0%
!!! ACTATTTTGAACTAGAACAA+AGG - chr5_4:7281088-7281107 None:intergenic 25.0%
! AAATTGGTAAATCAAAACCA+TGG - chr5_4:7281379-7281398 None:intergenic 25.0%
! TTAGATAACATCTTCATCTA+AGG - chr5_4:7281560-7281579 None:intergenic 25.0%
!!! ACTGATTTTTCTCAATGATA+CGG + chr5_4:7281800-7281819 Msa0834280:intron 25.0%
! ATGTATGTATGTACATTTAC+GGG - chr5_4:7282041-7282060 None:intergenic 25.0%
! TTCAAATTCTGCTAAAGAAA+AGG - chr5_4:7282456-7282475 None:intergenic 25.0%
! ATTGTAGCTAAAAGTTTACT+CGG + chr5_4:7282922-7282941 Msa0834280:intron 25.0%
! AAAATCTTTCCACCAATTTA+GGG - chr5_4:7283036-7283055 None:intergenic 25.0%
! GTTTATGTTAACGTTATCTA+AGG - chr5_4:7283357-7283376 None:intergenic 25.0%
!!! TGTTTTTTTCAAGTGCTTGT+TGG + chr5_4:7278246-7278265 Msa0834280:intron 30.0%
!!! GTTTTTTTCAAGTGCTTGTT+GGG + chr5_4:7278247-7278266 Msa0834280:intron 30.0%
!!! ATTTTTTCAGTGCTTCTGAT+AGG + chr5_4:7278412-7278431 Msa0834280:intron 30.0%
! TTTATGACACATCACTGTTT+TGG + chr5_4:7278569-7278588 Msa0834280:intron 30.0%
CTCACATTCAAAAAACTTCA+CGG - chr5_4:7278595-7278614 None:intergenic 30.0%
TTCAAATCATAGATCATCCT+TGG + chr5_4:7278737-7278756 Msa0834280:CDS 30.0%
CAAGATGTAAGCTACATATA+TGG + chr5_4:7278762-7278781 Msa0834280:intron 30.0%
CATTTATACTTCCAACAAAC+TGG + chr5_4:7278863-7278882 Msa0834280:intron 30.0%
CTAATTTCTTTCCCTTGTTA+AGG - chr5_4:7279031-7279050 None:intergenic 30.0%
ACATGATATCAATAAGTTGC+AGG - chr5_4:7279063-7279082 None:intergenic 30.0%
TTTCACTTAAGATGCTTCTA+AGG - chr5_4:7279197-7279216 None:intergenic 30.0%
ACCATATTCCTTGTCAATTT+CGG + chr5_4:7279255-7279274 Msa0834280:intron 30.0%
ATCAGTTAAATACTATGCCA+TGG - chr5_4:7279378-7279397 None:intergenic 30.0%
! CATAGTATTTAACTGATTCC+TGG + chr5_4:7279381-7279400 Msa0834280:intron 30.0%
! TTCAAATGTTAAAAGAGTGC+AGG - chr5_4:7279583-7279602 None:intergenic 30.0%
! TTGGTTCTTCATTGATAAAC+TGG + chr5_4:7279713-7279732 Msa0834280:intron 30.0%
TACATTAGAATTAGCTCCTT+TGG - chr5_4:7279787-7279806 None:intergenic 30.0%
!! ATTTTAAATACCGATTGGCA+AGG + chr5_4:7279857-7279876 Msa0834280:intron 30.0%
!! TTTTAAATACCGATTGGCAA+GGG + chr5_4:7279858-7279877 Msa0834280:intron 30.0%
CTCATTCAAAACAAGAATCA+AGG + chr5_4:7280123-7280142 Msa0834280:CDS 30.0%
TATCGTAATATATCCAACCT+TGG - chr5_4:7280327-7280346 None:intergenic 30.0%
AACAAGCAACTAGAAACATT+GGG - chr5_4:7280351-7280370 None:intergenic 30.0%
AAACAAGCAACTAGAAACAT+TGG - chr5_4:7280352-7280371 None:intergenic 30.0%
TTAAACATATGCCTAAGTGT+CGG + chr5_4:7280855-7280874 Msa0834280:intron 30.0%
CAAACAGAGAATTAATCTCA+AGG - chr5_4:7280932-7280951 None:intergenic 30.0%
CTTGAGATTAATTCTCTGTT+TGG + chr5_4:7280930-7280949 Msa0834280:intron 30.0%
! TAGTAGTTCCTTGGTAATAT+TGG + chr5_4:7280972-7280991 Msa0834280:intron 30.0%
AAATACTACCTTGTGAAACA+AGG - chr5_4:7281488-7281507 None:intergenic 30.0%
AAAGCTTGTCAAGAATACTT+TGG - chr5_4:7281630-7281649 None:intergenic 30.0%
TTTACTGTGACAAAAAGACT+AGG + chr5_4:7281647-7281666 Msa0834280:intron 30.0%
AAGAAATTCCTGCATTTACA+AGG + chr5_4:7281711-7281730 Msa0834280:intron 30.0%
CATGTCAAAGAAAGTTATCT+TGG - chr5_4:7281763-7281782 None:intergenic 30.0%
TAACGGTGGAATATATTGAT+CGG + chr5_4:7282120-7282139 Msa0834280:intron 30.0%
AACATATTAATGTCTTCCTG+CGG - chr5_4:7282220-7282239 None:intergenic 30.0%
AATGTGCAGCTTGATTAAAT+TGG + chr5_4:7282245-7282264 Msa0834280:intron 30.0%
TTTACATTCTATAGTCCAAG+CGG - chr5_4:7282336-7282355 None:intergenic 30.0%
TTAACTTAAGGTCCTAATGA+AGG - chr5_4:7282408-7282427 None:intergenic 30.0%
! TAGGACCTTAAGTTAACTTT+TGG + chr5_4:7282412-7282431 Msa0834280:intron 30.0%
ACAACTCATCAACTCAAATT+TGG + chr5_4:7282614-7282633 Msa0834280:CDS 30.0%
CAACTCATCAACTCAAATTT+GGG + chr5_4:7282615-7282634 Msa0834280:CDS 30.0%
TTTGTAGTTTGAATATGACC+AGG + chr5_4:7282724-7282743 Msa0834280:intron 30.0%
TAACTAACATTCACATTTCC+TGG - chr5_4:7282745-7282764 None:intergenic 30.0%
TAAAGTCATTCTCCCTAAAT+TGG + chr5_4:7283021-7283040 Msa0834280:CDS 30.0%
GAAAATCTTTCCACCAATTT+AGG - chr5_4:7283037-7283056 None:intergenic 30.0%
! TACCTGAATTTTGAACTGTA+AGG - chr5_4:7283196-7283215 None:intergenic 30.0%
TATCATACTGAGTTTGGCAA+AGG + chr5_4:7278270-7278289 Msa0834280:intron 35.0%
CTCAATTTGTCTAGCATGTT+TGG - chr5_4:7278330-7278349 None:intergenic 35.0%
CAAACATGCTAGACAAATTG+AGG + chr5_4:7278328-7278347 Msa0834280:intron 35.0%
GAAAGACCATGATGAATTTC+CGG + chr5_4:7278479-7278498 Msa0834280:CDS 35.0%
GCATTATAGAAAGAACTCAC+CGG - chr5_4:7278501-7278520 None:intergenic 35.0%
!! GTTGAGTTGAGATGATTCAT+TGG + chr5_4:7278614-7278633 Msa0834280:intron 35.0%
TCAGAGGTAATATTGCAGTT+AGG - chr5_4:7278799-7278818 None:intergenic 35.0%
ACTTATGTTATCTCGGTCTA+TGG - chr5_4:7278840-7278859 None:intergenic 35.0%
! GATTTTCATAGCCAGTTTGT+TGG - chr5_4:7278877-7278896 None:intergenic 35.0%
! AGTTTGAATGGCCTTAACAA+GGG + chr5_4:7279017-7279036 Msa0834280:intron 35.0%
CATCTTAAGTGAAATCACCA+TGG + chr5_4:7279203-7279222 Msa0834280:intron 35.0%
TCCGAAATTGACAAGGAATA+TGG - chr5_4:7279259-7279278 None:intergenic 35.0%
!! TATCTAGGTTCTGAAACATC+TGG + chr5_4:7279292-7279311 Msa0834280:intron 35.0%
!! ATCTAGGTTCTGAAACATCT+GGG + chr5_4:7279293-7279312 Msa0834280:intron 35.0%
ACATCTGGGAAGAAAAATGT+TGG + chr5_4:7279307-7279326 Msa0834280:intron 35.0%
CATCTGGGAAGAAAAATGTT+GGG + chr5_4:7279308-7279327 Msa0834280:intron 35.0%
!! GACATTTGCTATTCAGGTAA+TGG + chr5_4:7279549-7279568 Msa0834280:intron 35.0%
GAAGATGCTAAGATATGAGT+AGG + chr5_4:7279600-7279619 Msa0834280:intron 35.0%
GTTGAGACATAAACCACTAT+TGG + chr5_4:7279657-7279676 Msa0834280:intron 35.0%
! AACTGAAAGCTTACGCATTT+TGG - chr5_4:7279689-7279708 None:intergenic 35.0%
CGTAAGCTTTCAGTTCAATT+TGG + chr5_4:7279694-7279713 Msa0834280:intron 35.0%
ACATTCACAACTAAGCTGTT+AGG + chr5_4:7279753-7279772 Msa0834280:intron 35.0%
TCCTATAAGTTCATGTTGTG+TGG + chr5_4:7279922-7279941 Msa0834280:intron 35.0%
TCCACACAACATGAACTTAT+AGG - chr5_4:7279926-7279945 None:intergenic 35.0%
! AATTGAGTTGCTTGAAGAAG+AGG + chr5_4:7279998-7280017 Msa0834280:CDS 35.0%
! TTTTTGAACAGTGTGTTAGC+CGG + chr5_4:7280063-7280082 Msa0834280:CDS 35.0%
ACACTAGAACTTTGTTCAGA+AGG - chr5_4:7280092-7280111 None:intergenic 35.0%
! TTCTGAACAAAGTTCTAGTG+TGG + chr5_4:7280091-7280110 Msa0834280:CDS 35.0%
!!! GATTCTTGTTTTGAATGAGC+AGG - chr5_4:7280122-7280141 None:intergenic 35.0%
AAGCGCTTGAAATTATGCTT+GGG - chr5_4:7280154-7280173 None:intergenic 35.0%
! AAAGCGCTTGAAATTATGCT+TGG - chr5_4:7280155-7280174 None:intergenic 35.0%
! TTTGAAATAAGAGCTTGCAG+AGG - chr5_4:7280206-7280225 None:intergenic 35.0%
TAGGATTAAGGTGAGAATGT+TGG - chr5_4:7280474-7280493 None:intergenic 35.0%
TCTCACCTTAATCCTATGTT+AGG + chr5_4:7280478-7280497 Msa0834280:intron 35.0%
!!! TCTTTTAAAGCTCGCAATAC+AGG - chr5_4:7280536-7280555 None:intergenic 35.0%
AATCTGCAGTGGAAATATCT+TGG + chr5_4:7280744-7280763 Msa0834280:CDS 35.0%
ATAATTGAACTCCGACACTT+AGG - chr5_4:7280869-7280888 None:intergenic 35.0%
CTTAACAACTAGTAGTTCCT+TGG + chr5_4:7280963-7280982 Msa0834280:intron 35.0%
CAATCATGCCAATATTACCA+AGG - chr5_4:7280983-7281002 None:intergenic 35.0%
TTCAAAATAGTCAGACTACC+AGG + chr5_4:7281097-7281116 Msa0834280:intron 35.0%
ATAATATGAAGAAGCTGTCC+TGG - chr5_4:7281118-7281137 None:intergenic 35.0%
GTGATCGAAAAATTGCATTC+TGG + chr5_4:7281298-7281317 Msa0834280:CDS 35.0%
TGACAGGCATATTTAGCATA+TGG + chr5_4:7281433-7281452 Msa0834280:intron 35.0%
! TTGTTGTTCCTTGTAAATGC+AGG - chr5_4:7281722-7281741 None:intergenic 35.0%
AGAAAGTTATCTTGGAACGA+AGG - chr5_4:7281755-7281774 None:intergenic 35.0%
ACAAAATATCGCTTGCTCTA+TGG - chr5_4:7281961-7281980 None:intergenic 35.0%
CATGTATGAACGAAGTCTAA+CGG + chr5_4:7282103-7282122 Msa0834280:intron 35.0%
GATATGCTTAGACCTTCATT+AGG + chr5_4:7282393-7282412 Msa0834280:intron 35.0%
!! TTCACCACTTTTCTTCCTAA+GGG - chr5_4:7282589-7282608 None:intergenic 35.0%
! TGATGCATTGATGAATCACA+CGG + chr5_4:7282812-7282831 Msa0834280:intron 35.0%
!! ATCAGCATTGATGATATCCT+TGG + chr5_4:7283070-7283089 Msa0834280:CDS 35.0%
TGATATCCTTGGATGGATAA+TGG + chr5_4:7283081-7283100 Msa0834280:CDS 35.0%
! CATTTTCCATTATCCATCCA+AGG - chr5_4:7283090-7283109 None:intergenic 35.0%
! ATTCAGGTACATGTTTTCGA+AGG + chr5_4:7283207-7283226 Msa0834280:CDS 35.0%
TTCACTTTCTTCCTCTCTTC+AGG + chr5_4:7277979-7277998 Msa0834280:five_prime_UTR 40.0%
! GTAAATGGAAGGAAGAGTGT+GGG - chr5_4:7278005-7278024 None:intergenic 40.0%
TGTAAATGGAAGGAAGAGTG+TGG - chr5_4:7278006-7278025 None:intergenic 40.0%
GTTGGGTATCATACTGAGTT+TGG + chr5_4:7278264-7278283 Msa0834280:intron 40.0%
AGGAACTCGAAATTCTCAAG+AGG + chr5_4:7278432-7278451 Msa0834280:CDS 40.0%
AACTCGAAATTCTCAAGAGG+TGG + chr5_4:7278435-7278454 Msa0834280:CDS 40.0%
TTCATCATGGTCTTTCCCTA+TGG - chr5_4:7278475-7278494 None:intergenic 40.0%
AACTCACCGGAAATTCATCA+TGG - chr5_4:7278488-7278507 None:intergenic 40.0%
! GGTTTTGCCATGATTTGAAC+AGG + chr5_4:7278635-7278654 Msa0834280:intron 40.0%
CAATTGTGGTTGTCATGCAA+TGG - chr5_4:7278699-7278718 None:intergenic 40.0%
GTAGCTTACATCTTGTTCCA+AGG - chr5_4:7278757-7278776 None:intergenic 40.0%
AGTTGAACGGAATAGTTCAG+AGG - chr5_4:7278815-7278834 None:intergenic 40.0%
TCGGTCTATGGAAAGTTGAA+CGG - chr5_4:7278828-7278847 None:intergenic 40.0%
TTAAAAGGGGTGAAAGCCAA+TGG + chr5_4:7278945-7278964 Msa0834280:intron 40.0%
ACTGTGATTCATCGCATTGT+GGG - chr5_4:7279000-7279019 None:intergenic 40.0%
AACTGTGATTCATCGCATTG+TGG - chr5_4:7279001-7279020 None:intergenic 40.0%
GCGATGAATCACAGTTTGAA+TGG + chr5_4:7279005-7279024 Msa0834280:intron 40.0%
! CAGTTTGAATGGCCTTAACA+AGG + chr5_4:7279016-7279035 Msa0834280:intron 40.0%
GAGATGCGTATTGTGTATCT+AGG + chr5_4:7279277-7279296 Msa0834280:intron 40.0%
! GTTTTCCTGTATGATGACCA+TGG + chr5_4:7279358-7279377 Msa0834280:intron 40.0%
CATATCAACATAGGAACTCC+AGG - chr5_4:7279402-7279421 None:intergenic 40.0%
GAGTTCCTATGTTGATATGC+AGG + chr5_4:7279403-7279422 Msa0834280:intron 40.0%
CTCAACCTGCATATCAACAT+AGG - chr5_4:7279411-7279430 None:intergenic 40.0%
! TCCAGGTGATAAAGTACTTG+AGG - chr5_4:7279501-7279520 None:intergenic 40.0%
AAAAAAACTACGAGTAGGCG+TGG + chr5_4:7279635-7279654 Msa0834280:intron 40.0%
CTGTTAGGAGTTAGAACCAA+AGG + chr5_4:7279768-7279787 Msa0834280:intron 40.0%
! AGCATGTTCTTGCTATGTAC+AGG + chr5_4:7280036-7280055 Msa0834280:CDS 40.0%
CTAGAACTTTGTTCAGAAGG+TGG - chr5_4:7280089-7280108 None:intergenic 40.0%
AGTCATGCTCCTTTATCAAG+TGG + chr5_4:7280257-7280276 Msa0834280:CDS 40.0%
AATATATCCAACCTTGGTGG+TGG - chr5_4:7280321-7280340 None:intergenic 40.0%
CGTAATATATCCAACCTTGG+TGG - chr5_4:7280324-7280343 None:intergenic 40.0%
GCGAACCTAACATAGGATTA+AGG - chr5_4:7280486-7280505 None:intergenic 40.0%
GTATGGCAACTATGTATTGC+TGG + chr5_4:7280603-7280622 Msa0834280:CDS 40.0%
! TATCGGTGACCTACTGTTTT+CGG - chr5_4:7280654-7280673 None:intergenic 40.0%
CTGTTCTTGTAAATCTGCAG+TGG + chr5_4:7280733-7280752 Msa0834280:CDS 40.0%
TTCTCATGCTTCTTATGCCA+TGG + chr5_4:7280790-7280809 Msa0834280:CDS 40.0%
CTGTTCGACTAGAATTCTGA+AGG - chr5_4:7281247-7281266 None:intergenic 40.0%
AAGGGTGAATGTCAGTCAAA+TGG + chr5_4:7281272-7281291 Msa0834280:CDS 40.0%
CACACTCATATGAATCACCA+TGG + chr5_4:7281359-7281378 Msa0834280:intron 40.0%
TGAGTACAATTGTGTAGTGC+AGG + chr5_4:7281896-7281915 Msa0834280:intron 40.0%
CACACATGTGAATTGTTGTC+AGG + chr5_4:7282074-7282093 Msa0834280:intron 40.0%
!! GTTTAGTTTGTTTCTCCGCT+TGG + chr5_4:7282318-7282337 Msa0834280:intron 40.0%
! TGCGTTTTTATCAAACGCAG+TGG + chr5_4:7282541-7282560 Msa0834280:intron 40.0%
!! CTTCACCACTTTTCTTCCTA+AGG - chr5_4:7282590-7282609 None:intergenic 40.0%
TTCGAATCTAAGAGAAGAGC+TGG + chr5_4:7282946-7282965 Msa0834280:CDS 40.0%
TGTCTGTAGAAACTCTCTCT+TGG - chr5_4:7282978-7282997 None:intergenic 40.0%
AGTCATTCTCCCTAAATTGG+TGG + chr5_4:7283024-7283043 Msa0834280:CDS 40.0%
! GCATTGATGATATCCTTGGA+TGG + chr5_4:7283074-7283093 Msa0834280:CDS 40.0%
AGTCGTCTCAGATCATAGAA+TGG + chr5_4:7283167-7283186 Msa0834280:CDS 40.0%
GGCCTTACAGTTCAAAATTC+AGG + chr5_4:7283191-7283210 Msa0834280:CDS 40.0%
AGCTATGATCTTATTGTCCC+TGG + chr5_4:7283242-7283261 Msa0834280:exon 40.0%
!! ATAACTGGTTTGAGGAAGCT+AGG + chr5_4:7283268-7283287 Msa0834280:three_prime_UTR 40.0%
AATGATGCAGAAGCAAGTGC+TGG + chr5_4:7278095-7278114 Msa0834280:CDS 45.0%
!! GAAGCAAGTGCTGGATATGT+TGG + chr5_4:7278104-7278123 Msa0834280:CDS 45.0%
TAGATCGTTTGTGTCGAGGT+TGG - chr5_4:7278151-7278170 None:intergenic 45.0%
CTGTTAGATCGTTTGTGTCG+AGG - chr5_4:7278155-7278174 None:intergenic 45.0%
CTCGACACAAACGATCTAAC+AGG + chr5_4:7278153-7278172 Msa0834280:CDS 45.0%
TCGAAATTCTCAAGAGGTGG+TGG + chr5_4:7278438-7278457 Msa0834280:CDS 45.0%
! GTGGTGTTTTGCGTTCCATA+GGG + chr5_4:7278457-7278476 Msa0834280:CDS 45.0%
TGTGATTCATCGCATTGTGG+GGG - chr5_4:7278998-7279017 None:intergenic 45.0%
CTGTGATTCATCGCATTGTG+GGG - chr5_4:7278999-7279018 None:intergenic 45.0%
ACGCATCTCCGAAATTGACA+AGG - chr5_4:7279266-7279285 None:intergenic 45.0%
CTATGCCATGGTCATCATAC+AGG - chr5_4:7279366-7279385 None:intergenic 45.0%
GCATGGATTTCTCCTTCTGT+AGG - chr5_4:7279448-7279467 None:intergenic 45.0%
ATCTTGCTCGAGAGAGCAAT+GGG + chr5_4:7279470-7279489 Msa0834280:CDS 45.0%
GCCTCAAGTACTTTATCACC+TGG + chr5_4:7279497-7279516 Msa0834280:CDS 45.0%
ACACAGACACTTTGCTTCTC+AGG + chr5_4:7279520-7279539 Msa0834280:CDS 45.0%
! GCTATTCAGGTAATGGCGAA+CGG + chr5_4:7279556-7279575 Msa0834280:intron 45.0%
! CTATTCAGGTAATGGCGAAC+GGG + chr5_4:7279557-7279576 Msa0834280:intron 45.0%
!! ATTTTGGCGAAGGCCAATAG+TGG - chr5_4:7279673-7279692 None:intergenic 45.0%
!! AAGCTTACGCATTTTGGCGA+AGG - chr5_4:7279683-7279702 None:intergenic 45.0%
TAGCAAGAACATGCTGTTCG+CGG - chr5_4:7280031-7280050 None:intergenic 45.0%
AACTTTGTTCAGAAGGTGGC+CGG - chr5_4:7280085-7280104 None:intergenic 45.0%
ACTTCTCGCGAACCTAACAT+AGG - chr5_4:7280493-7280512 None:intergenic 45.0%
TGAGGAGATGGTGAAGTGTA+TGG + chr5_4:7280586-7280605 Msa0834280:CDS 45.0%
GTAGGTCACCGATATTGTCA+AGG + chr5_4:7280660-7280679 Msa0834280:CDS 45.0%
GTGGAGGACCTTGACAATAT+CGG - chr5_4:7280671-7280690 None:intergenic 45.0%
AATACTGTGTCGAGGCTGTA+TGG - chr5_4:7280699-7280718 None:intergenic 45.0%
TCCTCTACAATACTGTGTCG+AGG - chr5_4:7280707-7280726 None:intergenic 45.0%
CTTATGCCATGGACAACTAC+AGG + chr5_4:7280801-7280820 Msa0834280:CDS 45.0%
AACGAACCTGTAGTTGTCCA+TGG - chr5_4:7280810-7280829 None:intergenic 45.0%
TTCTAGTCGAACAGCTCGAA+AGG + chr5_4:7281253-7281272 Msa0834280:CDS 45.0%
TCTAGTCGAACAGCTCGAAA+GGG + chr5_4:7281254-7281273 Msa0834280:CDS 45.0%
! AACTTCCTTTTCCTGCTGAC+AGG + chr5_4:7281417-7281436 Msa0834280:intron 45.0%
ATATGCCTGTCAGCAGGAAA+AGG - chr5_4:7281425-7281444 None:intergenic 45.0%
TGCTAAATATGCCTGTCAGC+AGG - chr5_4:7281431-7281450 None:intergenic 45.0%
GAATTCCCCAAAGCTCTCTA+AGG + chr5_4:7281455-7281474 Msa0834280:CDS 45.0%
AACAAATGAGTACCCGTCCA+AGG - chr5_4:7281998-7282017 None:intergenic 45.0%
GTATGAACGAAGTCTAACGG+TGG + chr5_4:7282106-7282125 Msa0834280:intron 45.0%
CGTCTCAGATCATAGAATGG+CGG + chr5_4:7283170-7283189 Msa0834280:CDS 45.0%
TATTGTCCCTGGAGCATAAC+TGG + chr5_4:7283253-7283272 Msa0834280:three_prime_UTR 45.0%
CTCAAACCAGTTATGCTCCA+GGG - chr5_4:7283262-7283281 None:intergenic 45.0%
!! ACTATTTATTTAAAAAAAAA+AGG - chr5_4:7281844-7281863 None:intergenic 5.0%
! GGTGGTGTTTTGCGTTCCAT+AGG + chr5_4:7278456-7278475 Msa0834280:CDS 50.0%
CTAGAAGCCCTTGCTGAAAG+TGG - chr5_4:7278666-7278685 None:intergenic 50.0%
CACTTTCAGCAAGGGCTTCT+AGG + chr5_4:7278664-7278683 Msa0834280:CDS 50.0%
GGGTGAAAGCCAATGGTTGT+TGG + chr5_4:7278952-7278971 Msa0834280:intron 50.0%
GCTACAGCTACACCTACAGA+AGG + chr5_4:7279433-7279452 Msa0834280:CDS 50.0%
TCTCTCGAGCAAGATGTGCA+TGG - chr5_4:7279465-7279484 None:intergenic 50.0%
CATCTTGCTCGAGAGAGCAA+TGG + chr5_4:7279469-7279488 Msa0834280:CDS 50.0%
! GAAGCAAAGTGTCTGTGTCC+AGG - chr5_4:7279518-7279537 None:intergenic 50.0%
ATTCGCATGCCCTTGCCAAT+CGG - chr5_4:7279870-7279889 None:intergenic 50.0%
! TTTTCCCGATTCCACCACCA+AGG + chr5_4:7280307-7280326 Msa0834280:CDS 50.0%
!! TCCAACCTTGGTGGTGGAAT+CGG - chr5_4:7280315-7280334 None:intergenic 50.0%
TCTCCTCAGAAAGCCTGCTT+GGG - chr5_4:7280574-7280593 None:intergenic 50.0%
ATCTCCTCAGAAAGCCTGCT+TGG - chr5_4:7280575-7280594 None:intergenic 50.0%
! AAGCAGGCTTTCTGAGGAGA+TGG + chr5_4:7280574-7280593 Msa0834280:CDS 50.0%
GCCTCGACACAGTATTGTAG+AGG + chr5_4:7280703-7280722 Msa0834280:CDS 50.0%
! TTCCCCAAAGCTCTCTAAGG+AGG + chr5_4:7281458-7281477 Msa0834280:CDS 50.0%
AGCCTCCTTAGAGAGCTTTG+GGG - chr5_4:7281463-7281482 None:intergenic 50.0%
CAGCCTCCTTAGAGAGCTTT+GGG - chr5_4:7281464-7281483 None:intergenic 50.0%
GTGCAGGCTGCTTACAACAT+TGG + chr5_4:7281912-7281931 Msa0834280:intron 50.0%
CAGGCTGCTTACAACATTGG+CGG + chr5_4:7281915-7281934 Msa0834280:intron 50.0%
CACTGATACTATGTTGCCGC+AGG + chr5_4:7282201-7282220 Msa0834280:intron 50.0%
GCTGCCCTTAGGAAGAAAAG+TGG + chr5_4:7282582-7282601 Msa0834280:CDS 50.0%
GGCAAAGCAGACAAGTGGTT+GGG - chr5_4:7282652-7282671 None:intergenic 50.0%
CAAAGGGCAAAGCAGACAAG+TGG - chr5_4:7282657-7282676 None:intergenic 50.0%
CATAGGATCCGACAATGCTC+CGG - chr5_4:7282682-7282701 None:intergenic 50.0%
CCTCAAACCAGTTATGCTCC+AGG - chr5_4:7283263-7283282 None:intergenic 50.0%
!! CCTGGAGCATAACTGGTTTG+AGG + chr5_4:7283260-7283279 Msa0834280:three_prime_UTR 50.0%
! AAGAGTGTGGGCCTGAAGAG+AGG - chr5_4:7277993-7278012 None:intergenic 55.0%
GGCGACGCCTGTTCAAATCA+TGG - chr5_4:7278645-7278664 None:intergenic 55.0%
CTGCGAGAGCCAACAACCAT+TGG - chr5_4:7278964-7278983 None:intergenic 55.0%
AAGAGCTTGCAGAGGTCGCA+GGG - chr5_4:7280198-7280217 None:intergenic 55.0%
TAAGAGCTTGCAGAGGTCGC+AGG - chr5_4:7280199-7280218 None:intergenic 55.0%
!! CCAACCTTGGTGGTGGAATC+GGG - chr5_4:7280314-7280333 None:intergenic 55.0%
!! TGCTTGGGCACTGGTGTAGA+TGG - chr5_4:7280559-7280578 None:intergenic 55.0%
ATCTACACCAGTGCCCAAGC+AGG + chr5_4:7280558-7280577 Msa0834280:CDS 55.0%
CTGTCCACGCCGAAAACAGT+AGG + chr5_4:7280642-7280661 Msa0834280:CDS 55.0%
! GTGACCTACTGTTTTCGGCG+TGG - chr5_4:7280649-7280668 None:intergenic 55.0%
!! AGGCTGTATGGCATTGGTGG+AGG - chr5_4:7280687-7280706 None:intergenic 55.0%
! TCGAGGCTGTATGGCATTGG+TGG - chr5_4:7280690-7280709 None:intergenic 55.0%
GTGTCGAGGCTGTATGGCAT+TGG - chr5_4:7280693-7280712 None:intergenic 55.0%
CCAGCCTCCTTAGAGAGCTT+TGG - chr5_4:7281465-7281484 None:intergenic 55.0%
! CCAAAGCTCTCTAAGGAGGC+TGG + chr5_4:7281462-7281481 Msa0834280:CDS 55.0%
!! GAGGCTGGCCTTGTTTCACA+AGG + chr5_4:7281477-7281496 Msa0834280:CDS 55.0%
TGTTTCCGAACACCTCGCCT+TGG + chr5_4:7281978-7281997 Msa0834280:intron 55.0%
GTGTTGTGTCTGCTGCCCTT+AGG + chr5_4:7282571-7282590 Msa0834280:CDS 55.0%
GGGCAAAGCAGACAAGTGGT+TGG - chr5_4:7282653-7282672 None:intergenic 55.0%
GTCTGCTTTGCCCTTTGCAC+CGG + chr5_4:7282660-7282679 Msa0834280:CDS 55.0%
CGACAATGCTCCGGTGCAAA+GGG - chr5_4:7282673-7282692 None:intergenic 55.0%
!! CCTTTGCACCGGAGCATTGT+CGG + chr5_4:7282671-7282690 Msa0834280:CDS 55.0%
!! CGGAGCATTGTCGGATCCTA+TGG + chr5_4:7282680-7282699 Msa0834280:CDS 55.0%
! AGGCGTCGCCACTTTCAGCA+AGG + chr5_4:7278655-7278674 Msa0834280:intron 60.0%
! GGCGTCGCCACTTTCAGCAA+GGG + chr5_4:7278656-7278675 Msa0834280:intron 60.0%
AGAGCTTGCAGAGGTCGCAG+GGG - chr5_4:7280197-7280216 None:intergenic 60.0%
CCCGATTCCACCACCAAGGT+TGG + chr5_4:7280311-7280330 Msa0834280:intron 60.0%
CAGAAAGCCTGCTTGGGCAC+TGG - chr5_4:7280568-7280587 None:intergenic 60.0%
GTGCCCAAGCAGGCTTTCTG+AGG + chr5_4:7280568-7280587 Msa0834280:CDS 60.0%
TCCGAACACCTCGCCTTGGA+CGG + chr5_4:7281982-7282001 Msa0834280:intron 60.0%
ATGAGTACCCGTCCAAGGCG+AGG - chr5_4:7281993-7282012 None:intergenic 60.0%
CCGACAATGCTCCGGTGCAA+AGG - chr5_4:7282674-7282693 None:intergenic 60.0%
GAGCTTGCAGAGGTCGCAGG+GGG - chr5_4:7280196-7280215 None:intergenic 65.0%
! CCCGTCCAAGGCGAGGTGTT+CGG - chr5_4:7281986-7282005 None:intergenic 65.0%
CCGAACACCTCGCCTTGGAC+GGG + chr5_4:7281983-7282002 Msa0834280:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 7277979 7283464 7277979 ID=Msa0834280;Name=Msa0834280
chr5_4 mRNA 7277979 7283464 7277979 ID=Msa0834280-mRNA-1;Parent=Msa0834280;Name=Msa0834280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=110|0.88|1|1|1|1|10|215|562
chr5_4 exon 7277979 7278174 7277979 ID=Msa0834280-mRNA-1:exon:3254;Parent=Msa0834280-mRNA-1
chr5_4 exon 7278422 7278500 7278422 ID=Msa0834280-mRNA-1:exon:3255;Parent=Msa0834280-mRNA-1
chr5_4 exon 7278657 7278767 7278657 ID=Msa0834280-mRNA-1:exon:3256;Parent=Msa0834280-mRNA-1
chr5_4 exon 7279425 7279541 7279425 ID=Msa0834280-mRNA-1:exon:3257;Parent=Msa0834280-mRNA-1
chr5_4 exon 7279978 7280328 7279978 ID=Msa0834280-mRNA-1:exon:3258;Parent=Msa0834280-mRNA-1
chr5_4 exon 7280500 7280822 7280500 ID=Msa0834280-mRNA-1:exon:3259;Parent=Msa0834280-mRNA-1
chr5_4 exon 7281251 7281350 7281251 ID=Msa0834280-mRNA-1:exon:3260;Parent=Msa0834280-mRNA-1
chr5_4 exon 7281439 7281498 7281439 ID=Msa0834280-mRNA-1:exon:3261;Parent=Msa0834280-mRNA-1
chr5_4 exon 7282561 7282701 7282561 ID=Msa0834280-mRNA-1:exon:3262;Parent=Msa0834280-mRNA-1
chr5_4 exon 7282929 7283464 7282929 ID=Msa0834280-mRNA-1:exon:3263;Parent=Msa0834280-mRNA-1
chr5_4 five_prime_UTR 7277979 7278088 7277979 ID=Msa0834280-mRNA-1:five_prime_utr;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7278089 7278174 7278089 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7278422 7278500 7278422 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7278657 7278767 7278657 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7279425 7279541 7279425 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7279978 7280328 7279978 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7280500 7280822 7280500 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7281251 7281350 7281251 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7281439 7281498 7281439 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7282561 7282701 7282561 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 CDS 7282929 7283249 7282929 ID=Msa0834280-mRNA-1:cds;Parent=Msa0834280-mRNA-1
chr5_4 three_prime_UTR 7283250 7283464 7283250 ID=Msa0834280-mRNA-1:three_prime_utr;Parent=Msa0834280-mRNA-1
Gene Sequence

>Msa0834280

ATGATGAATGATGCAGAAGCAAGTGCTGGATATGTTGGTAACACTGCAAGTTCTCGACACCAACCTCGACACAAACGATCTAACAGTGCTTCTGATAGGAACTCGAAATTCTCAAGAGGTGGTGGTGTTTTGCGTTCCATAGGGAAAGACCATGATGAATTTCCGGCGTCGCCACTTTCAGCAAGGGCTTCTAGGATACAAACTCCATTGCATGACAACCACAATTGTATAAACAAGAATGCTTCTTCAAATCATAGATCATCCTTGGAACAAGATGTTGAGCAGCTACAGCTACACCTACAGAAGGAGAAATCCATGCACATCTTGCTCGAGAGAGCAATGGGCAGAGCCTCAAGTACTTTATCACCTGGACACAGACACTTTGCTTCTCAGACAAAAGACTTAATTACTGAAATTGAGTTGCTTGAAGAAGAGGTTACAAGCCGCGAACAGCATGTTCTTGCTATGTACAGGAATATTTTTGAACAGTGTGTTAGCCGGCCACCTTCTGAACAAAGTTCTAGTGTGGCTTCACCTGCTCATTCAAAACAAGAATCAAGGAAGCACCCAAGCATAATTTCAAGCGCTTTCTGTTCATCAAAAAACTTCCCCCTGCGACCTCTGCAAGCTCTTATTTCAAATAACGATTTGAAGAATAGAATCTTTGGGTCAAGTCATGCTCCTTTATCAAGTGGAAAAGAAAAAGTTTATTTTGGAAGGACTTTTCCCGATTCCACCACCAAGGTTCGCGAGAAGTTTTCTTCGATTGAGAAAGCTCCTGTATTGCGAGCTTTAAAAGACCATCTACACCAGTGCCCAAGCAGGCTTTCTGAGGAGATGGTGAAGTGTATGGCAACTATGTATTGCTGGCTTCGTAGTGCAAAATCTGTCCACGCCGAAAACAGTAGGTCACCGATATTGTCAAGGTCCTCCACCAATGCCATACAGCCTCGACACAGTATTGTAGAGGATCAAGACTGTTCTTGTAAATCTGCAGTGGAAATATCTTGGATAGCTACACGAAAACGTCATTCTTCTCATGCTTCTTATGCCATGGACAACTACAGAATTCTAGTCGAACAGCTCGAAAGGGTGAATGTCAGTCAAATGGAATGTGATCGAAAAATTGCATTCTGGATCAACGTTCATAATGCTCTTGTGATGCATGCATATTTAGCATATGGAATTCCCCAAAGCTCTCTAAGGAGGCTGGCCTTGTTTCACAAGTGGCTTGAAAGTGTTGTGTCTGCTGCCCTTAGGAAGAAAAGTGGTGAAGAAAGACAACTCATCAACTCAAATTTGGGTATTACTGATTCCCAACCACTTGTCTGCTTTGCCCTTTGCACCGGAGCATTGTCGGATCCTATGCTAAAAGTTTACTCGGCTTCGAATCTAAGAGAAGAGCTGGATGCTTCCAAGAGAGAGTTTCTACAGACAAATGTAGTTGTGAAGAAATCTAGTAAAGTCATTCTCCCTAAATTGGTGGAAAGATTTTCAAGAGAAGCATCAATCAGCATTGATGATATCCTTGGATGGATAATGGAAAATGTTGACAAAAAATTACATGACTCAATACAGAAGTGCATTGATCGTAAGTCGAGCAAAAAGTCGTCTCAGATCATAGAATGGCGGCCTTACAGTTCAAAATTCAGGTACATGTTTTCGAAGGATCTAGTAGACAAGCTATGA
Protein sequence

>Msa0834280

MMNDAEASAGYVGNTASSRHQPRHKRSNSASDRNSKFSRGGGVLRSIGKDHDEFPASPLSARASRIQTPLHDNHNCINKNASSNHRSSLEQDVEQLQLHLQKEKSMHILLERAMGRASSTLSPGHRHFASQTKDLITEIELLEEEVTSREQHVLAMYRNIFEQCVSRPPSEQSSSVASPAHSKQESRKHPSIISSAFCSSKNFPLRPLQALISNNDLKNRIFGSSHAPLSSGKEKVYFGRTFPDSTTKVREKFSSIEKAPVLRALKDHLHQCPSRLSEEMVKCMATMYCWLRSAKSVHAENSRSPILSRSSTNAIQPRHSIVEDQDCSCKSAVEISWIATRKRHSSHASYAMDNYRILVEQLERVNVSQMECDRKIAFWINVHNALVMHAYLAYGIPQSSLRRLALFHKWLESVVSAALRKKSGEERQLINSNLGITDSQPLVCFALCTGALSDPMLKVYSASNLREELDASKREFLQTNVVVKKSSKVILPKLVERFSREASISIDDILGWIMENVDKKLHDSIQKCIDRKSSKKSSQIIEWRPYSSKFRYMFSKDLVDKL*