AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139710 MtrunA17_Chr5g0399331 95.429 175 8 0 30 204 22 196 1.02e-103 311
Msa0139710 MtrunA17_Chr8g0373901 33.929 112 66 2 84 194 62 166 1.47e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139710 AT5G47380.2 57.065 184 76 3 23 204 27 209 4.13e-51 172
Msa0139710 AT5G47380.3 57.065 184 76 3 23 204 27 209 4.17e-51 172
Msa0139710 AT5G47380.4 57.065 184 76 3 23 204 27 209 1.44e-50 173
Msa0139710 AT5G47380.1 57.065 184 76 3 23 204 27 209 1.67e-50 173
Msa0139710 AT5G47380.5 63.576 151 53 2 56 204 3 153 1.64e-48 166

Find 137 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATCTTTCCACCAATTT+AGG 0.083497 1_3:+73550267 None:intergenic
ACAACTCATCAACTCAAATT+TGG 0.154234 1_3:-73550691 Msa0139710:three_prime_UTR
TTTATTCATACATGTTAATT+AGG 0.216708 1_3:+73549874 None:intergenic
TTCACTTTCTTCCTCTCTTC+AGG 0.258470 1_3:-73555424 Msa0139710:five_prime_UTR
CACTTTCAGCAAGGGCTTCT+AGG 0.260634 1_3:-73554615 Msa0139710:CDS
GTTTATGTTAACGTTATCTA+AGG 0.264155 1_3:+73549941 None:intergenic
AAAATCTTTCCACCAATTTA+GGG 0.275012 1_3:+73550268 None:intergenic
AAGAAATGTATGAATGTAAA+TGG 0.276295 1_3:+73555386 None:intergenic
TAAAGTCATTCTCCCTAAAT+TGG 0.293856 1_3:-73550280 Msa0139710:three_prime_UTR
GAAAGGCCATGATGAATTTC+CGG 0.303535 1_3:-73554935 Msa0139710:intron
ACAAAATATCGCTTGCTCTA+TGG 0.305387 1_3:+73551344 None:intergenic
GATTTGAAGAATAGAATCTT+TGG 0.308526 1_3:-73553069 Msa0139710:exon
CAGCCTCCTTAGAGAGCTTT+GGG 0.308831 1_3:+73551839 None:intergenic
GGCCTTACAGTTCAAAATTC+AGG 0.310105 1_3:-73550110 Msa0139710:three_prime_UTR
AAACATATATCAAAATATTA+AGG 0.324112 1_3:+73549904 None:intergenic
TATTGTCCCGGGAGCATAAC+TGG 0.329322 1_3:-73550048 Msa0139710:three_prime_UTR
TGCTTGGGCACTGGTGTAGA+TGG 0.356648 1_3:+73552744 None:intergenic
TCCAACCTTGGTGGTGGAAT+CGG 0.364526 1_3:+73552987 None:intergenic
CCAGCCTCCTTAGAGAGCTT+TGG 0.378177 1_3:+73551838 None:intergenic
CAACTCATCAACTCAAATTT+GGG 0.385152 1_3:-73550690 Msa0139710:three_prime_UTR
CCTTTGCACCGGAGCATTGT+CGG 0.387970 1_3:-73550634 Msa0139710:three_prime_UTR
TTTAAATCATAGAGCATCCT+TGG 0.388582 1_3:-73554542 Msa0139710:CDS
ACACAGACACTTTGCTTCTC+AGG 0.399323 1_3:-73553779 Msa0139710:intron
GAATTCCCCAAAGCTCTCTA+AGG 0.401712 1_3:-73551845 Msa0139710:three_prime_UTR
GTCTGCTTTGCCCTTTGCAC+CGG 0.407525 1_3:-73550645 Msa0139710:three_prime_UTR
ATCTCCTCAGAAAGCCTGCT+TGG 0.408102 1_3:+73552728 None:intergenic
CGGAGCATTGTCGGATCCTA+TGG 0.417025 1_3:-73550625 Msa0139710:intron
GTATGGCAACTATGTATTGC+TGG 0.425160 1_3:-73552697 Msa0139710:three_prime_UTR
TGATATCCTTGGATGGATAA+TGG 0.425516 1_3:-73550220 Msa0139710:three_prime_UTR
ATTTGAAGAATAGAATCTTT+GGG 0.427166 1_3:-73553068 Msa0139710:exon
CCAACCTTGGTGGTGGAATC+GGG 0.435103 1_3:+73552988 None:intergenic
TTCATCATGGCCTTTCCCTA+TGG 0.436112 1_3:+73554942 None:intergenic
AATCTGCAGTGGAAATATCT+TGG 0.440218 1_3:-73552556 Msa0139710:three_prime_UTR
TCCGAACACCTCGCCTTGGA+CGG 0.446044 1_3:-73551320 Msa0139710:three_prime_UTR
CTCGACACAAACGATCTAAC+AGG 0.446669 1_3:-73555257 Msa0139710:intron
CAGAAAGCCTGCTTGGGCAC+TGG 0.447555 1_3:+73552735 None:intergenic
ATCTTGCTCGAGAGAGCAAT+GGG 0.449689 1_3:-73553829 Msa0139710:CDS
CATTCTTGTTTATACAATTG+AGG 0.451686 1_3:+73554569 None:intergenic
GTGGAGGACCTTGACAATAT+CGG 0.456089 1_3:+73552632 None:intergenic
CCCGTCCAAGGCGAGGTGTT+CGG 0.458315 1_3:+73551319 None:intergenic
TCTCCTCAGAAAGCCTGCTT+GGG 0.468909 1_3:+73552729 None:intergenic
AAAGCGCTTGAAATTATGCT+TGG 0.470906 1_3:+73553146 None:intergenic
AATTGAGTTGCTTGAAGAAG+AGG 0.472868 1_3:-73553300 Msa0139710:CDS
TTCTCATGCTTCTTACGCCA+TGG 0.474043 1_3:-73552510 Msa0139710:three_prime_UTR
AAGGGTGAATGTCAGTCAAA+TGG 0.474180 1_3:-73552028 Msa0139710:three_prime_UTR
TAGATCGTTTGTGTCGAGTT+TGG 0.477859 1_3:+73555262 None:intergenic
ATCAGCATTGATGATATCCT+TGG 0.479859 1_3:-73550231 Msa0139710:three_prime_UTR
AATACTGTGTCGAGGCTGTA+TGG 0.480500 1_3:+73552604 None:intergenic
CGACAATGCTCCGGTGCAAA+GGG 0.482820 1_3:+73550635 None:intergenic
TGACAGGCATATTTAGCATA+TGG 0.485474 1_3:-73551867 Msa0139710:intron
AACTTTGTTCAGAAGGTGGC+CGG 0.487946 1_3:+73553216 None:intergenic
CTCATTCAAAACAAGAATCA+AGG 0.495075 1_3:-73553175 Msa0139710:CDS
TAAGAGCTTGCAGAGGTCGC+AGG 0.500429 1_3:+73553103 None:intergenic
AGCATGTTCTTGCTATGTAC+AGG 0.501029 1_3:-73553262 Msa0139710:CDS
TGTCTGTAGAAACTCTCTCT+TGG 0.502312 1_3:+73550326 None:intergenic
CTTACGCCATGGACAACTAC+AGG 0.505664 1_3:-73552499 Msa0139710:intron
CTAGAAGCCCTTGCTGAAAG+TGG 0.511951 1_3:+73554616 None:intergenic
TTCTAGTCGAACAGCTCGAA+AGG 0.512430 1_3:-73552047 Msa0139710:three_prime_UTR
CCGACAATGCTCCGGTGCAA+AGG 0.512555 1_3:+73550634 None:intergenic
GGCAAAGCAGACAAGTGGTT+GGG 0.513513 1_3:+73550656 None:intergenic
CCGAACACCTCGCCTTGGAC+GGG 0.515400 1_3:-73551319 Msa0139710:intron
AGGCTGTATGGCATTGGTGG+AGG 0.516474 1_3:+73552616 None:intergenic
ATTGTAGCTAAAAGTTTACT+CGG 0.519041 1_3:-73550379 Msa0139710:intron
CCAAAGCTCTCTAAGGAGGC+TGG 0.520350 1_3:-73551838 Msa0139710:three_prime_UTR
CCGGGAGCATAACTGGTTTG+AGG 0.521061 1_3:-73550041 Msa0139710:three_prime_UTR
TGTTTCCGAACACCTCGCCT+TGG 0.521123 1_3:-73551324 Msa0139710:three_prime_UTR
GTGTTGTGTCTGCTGCCCTT+AGG 0.521903 1_3:-73550734 Msa0139710:three_prime_UTR
ATAACTGGTTTGAGGAAGCT+AGG 0.522544 1_3:-73550033 Msa0139710:three_prime_UTR
CATCTTGCTCGAGAGAGCAA+TGG 0.523172 1_3:-73553830 Msa0139710:CDS
AAGCGCTTGAAATTATGCTT+GGG 0.524292 1_3:+73553147 None:intergenic
CCTCAAACCAGTTATGCTCC+CGG 0.526559 1_3:+73550041 None:intergenic
AGTCATTCTCCCTAAATTGG+TGG 0.528274 1_3:-73550277 Msa0139710:three_prime_UTR
TAGCAAGAACATGCTGTTCG+CGG 0.529545 1_3:+73553270 None:intergenic
AAGCTATGATCTTATTGTCC+CGG 0.530581 1_3:-73550060 Msa0139710:three_prime_UTR
AATATATCCAACCTTGGTGG+TGG 0.539919 1_3:+73552981 None:intergenic
AGCTATGATCTTATTGTCCC+GGG 0.544073 1_3:-73550059 Msa0139710:three_prime_UTR
ATTCTACTTTAACTTTGAAG+CGG 0.544363 1_3:-73549852 None:intergenic
AATGATGCAGAAGGAAGTGC+TGG 0.544961 1_3:-73555315 Msa0139710:CDS
CATAGGATCCGACAATGCTC+CGG 0.547311 1_3:+73550626 None:intergenic
AAGAGCTTGCAGAGGTCGCA+GGG 0.547732 1_3:+73553104 None:intergenic
TCGAAATTCTCAAGAGGCGG+TGG 0.548479 1_3:-73554976 Msa0139710:CDS
GTATCTTACATCTTGTTCCA+AGG 0.548890 1_3:+73554525 None:intergenic
TGAGGAGATGGTGAAGTGTA+TGG 0.551680 1_3:-73552714 Msa0139710:three_prime_UTR
AGTCATGCTCCTTTATCAAG+TGG 0.553004 1_3:-73553042 Msa0139710:three_prime_UTR
AAGCAGGCTTTCTGAGGAGA+TGG 0.553899 1_3:-73552726 Msa0139710:three_prime_UTR
CTCAAACCAGTTATGCTCCC+GGG 0.558635 1_3:+73550042 None:intergenic
ACACTAGAACTTTGTTCAGA+AGG 0.560400 1_3:+73553209 None:intergenic
TTCGAATCTAAGAGAAGAGC+TGG 0.561093 1_3:-73550355 Msa0139710:three_prime_UTR
AAGAGTGTGGGCCTGAAGAG+AGG 0.561545 1_3:+73555413 None:intergenic
GCATGGATTTCTCCTTCTGT+AGG 0.561780 1_3:+73553854 None:intergenic
CAATTGAGGTTGTCATGCAA+TGG 0.561881 1_3:+73554583 None:intergenic
AATGTATGAATGTAAATGGA+AGG 0.566808 1_3:+73555390 None:intergenic
TCGAGGCTGTATGGCATTGG+TGG 0.567060 1_3:+73552613 None:intergenic
GGCGTCGCCACTTTCAGCAA+GGG 0.571422 1_3:-73554623 Msa0139710:CDS
GTGATAAAGTACTTGAGGCT+CGG 0.575278 1_3:+73553806 None:intergenic
GGGCAAAGCAGACAAGTGGT+TGG 0.579650 1_3:+73550655 None:intergenic
AACGAACCTGTAGTTGTCCA+TGG 0.583760 1_3:+73552493 None:intergenic
AGGCGTCGCCACTTTCAGCA+AGG 0.584433 1_3:-73554624 Msa0139710:CDS
GAAGCAAAGTGTCTGTGTCC+AGG 0.591180 1_3:+73553784 None:intergenic
CTGTTCTTGTAAATCTGCAG+TGG 0.591557 1_3:-73552567 Msa0139710:three_prime_UTR
ATCTACACCAGTGCCCAAGC+AGG 0.591863 1_3:-73552742 Msa0139710:three_prime_UTR
GTGCCCAAGCAGGCTTTCTG+AGG 0.593720 1_3:-73552732 Msa0139710:three_prime_UTR
GTGCAGGCTGCTTACAACAT+TGG 0.594552 1_3:-73551390 Msa0139710:intron
AACTTACCGGAAATTCATCA+TGG 0.594598 1_3:+73554929 None:intergenic
CAGGCTGCTTACAACATTGG+CGG 0.595259 1_3:-73551387 Msa0139710:three_prime_UTR
GCCTCAAGTACTTTATCACC+TGG 0.597172 1_3:-73553802 Msa0139710:CDS
AACAAATGAGTACCCGTCCA+AGG 0.597530 1_3:+73551307 None:intergenic
AGTCGTCTCAGATCATAGAA+TGG 0.602234 1_3:-73550134 Msa0139710:three_prime_UTR
TCCAGGTGATAAAGTACTTG+AGG 0.602772 1_3:+73553801 None:intergenic
TCTAGTCGAACAGCTCGAAA+GGG 0.605265 1_3:-73552046 Msa0139710:three_prime_UTR
GTGTCGAGGCTGTATGGCAT+TGG 0.605760 1_3:+73552610 None:intergenic
AAATACTACCTTGTGAAACA+AGG 0.613394 1_3:+73551815 None:intergenic
AACTCGAAATTCTCAAGAGG+CGG 0.616701 1_3:-73554979 Msa0139710:CDS
CTAGAACTTTGTTCAGAAGG+TGG 0.619959 1_3:+73553212 None:intergenic
TTCTGAACAAAGTTCTAGTG+TGG 0.620122 1_3:-73553207 Msa0139710:CDS
CTGTCCACGCCGAAAACAGT+AGG 0.620191 1_3:-73552658 Msa0139710:three_prime_UTR
GCATTGATGATATCCTTGGA+TGG 0.631536 1_3:-73550227 Msa0139710:three_prime_UTR
TCTCTCGAGCAAGATGCGCA+TGG 0.633218 1_3:+73553837 None:intergenic
GCCTCGACACAGTATTGTAG+AGG 0.637071 1_3:-73552597 Msa0139710:three_prime_UTR
ATGAGTACCCGTCCAAGGCG+AGG 0.641672 1_3:+73551312 None:intergenic
TTCCCCAAAGCTCTCTAAGG+AGG 0.642648 1_3:-73551842 Msa0139710:three_prime_UTR
CGTAATATATCCAACCTTGG+TGG 0.644617 1_3:+73552978 None:intergenic
TCCTCTACAATACTGTGTCG+AGG 0.646627 1_3:+73552596 None:intergenic
GAGCTTGCAGAGGTCGCAGG+GGG 0.648286 1_3:+73553106 None:intergenic
CAAAGGGCAAAGCAGACAAG+TGG 0.655584 1_3:+73550651 None:intergenic
GCTGCCCTTAGGAAGAAAAG+TGG 0.661083 1_3:-73550723 Msa0139710:three_prime_UTR
AGGAACTCGAAATTCTCAAG+AGG 0.663545 1_3:-73554982 Msa0139710:CDS
GTAGGTCACCGATATTGTCA+AGG 0.668766 1_3:-73552640 Msa0139710:three_prime_UTR
GCTACAGCTACACCTACAGA+AGG 0.670545 1_3:-73553866 Msa0139710:CDS
GTAAATGGAAGGAAGAGTGT+GGG 0.673445 1_3:+73555401 None:intergenic
ATAATGATGAATGATGCAGA+AGG 0.674072 1_3:-73555324 Msa0139710:CDS
TTTGAAATAAGAGCTTGCAG+AGG 0.679884 1_3:+73553096 None:intergenic
GAGGCTGGCCTTGTTTCACA+AGG 0.680836 1_3:-73551823 Msa0139710:intron
CGTCTCAGATCATAGAATGG+CGG 0.692691 1_3:-73550131 Msa0139710:three_prime_UTR
AGAGCTTGCAGAGGTCGCAG+GGG 0.707036 1_3:+73553105 None:intergenic
TGTAAATGGAAGGAAGAGTG+TGG 0.707204 1_3:+73555400 None:intergenic
AGCCTCCTTAGAGAGCTTTG+GGG 0.739142 1_3:+73551840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATAAAATATATTTAG+AGG + chr1_3:73554133-73554152 None:intergenic 10.0%
!!! CTAAATATATTTTATTGTTT+TGG - chr1_3:73554133-73554152 Msa0139710:intron 10.0%
!! AAACATATATCAAAATATTA+AGG + chr1_3:73555376-73555395 None:intergenic 10.0%
!!! ACTATGATATTTAAGATTAT+AGG - chr1_3:73550400-73550419 Msa0139710:intron 15.0%
!! TTAACTCAAAATTGAAAAAA+CGG - chr1_3:73552357-73552376 Msa0139710:intron 15.0%
!! ATATAATATTATACTACAGA+TGG - chr1_3:73552385-73552404 Msa0139710:intron 15.0%
!!! ATTTTATTGAAACTTAAGAA+GGG - chr1_3:73553564-73553583 Msa0139710:intron 15.0%
!!! TAACTTGTTTATTCAATTAT+CGG - chr1_3:73553659-73553678 Msa0139710:intron 15.0%
!! TTTATTCATACATGTTAATT+AGG + chr1_3:73555406-73555425 None:intergenic 15.0%
!! AAGAAATGTATGAATGTAAA+TGG + chr1_3:73549894-73549913 None:intergenic 20.0%
!! CTAAAAAAAAATGAAAACTC+TGG - chr1_3:73550939-73550958 Msa0139710:intron 20.0%
!!! TTACTTTACTTTTTTTTAGG+TGG + chr1_3:73551173-73551192 None:intergenic 20.0%
!!! CCATTACTTTACTTTTTTTT+AGG + chr1_3:73551176-73551195 None:intergenic 20.0%
!! CCTAAAAAAAAGTAAAGTAA+TGG - chr1_3:73551173-73551192 Msa0139710:intron 20.0%
!! ATTTAATCATTTCCATGTAT+AGG - chr1_3:73551241-73551260 Msa0139710:intron 20.0%
!! TCAAAAAAATATCTATGAGT+AGG - chr1_3:73551607-73551626 Msa0139710:intron 20.0%
!!! CAATCAGTATTTAAAATTTC+AGG + chr1_3:73551833-73551852 None:intergenic 20.0%
!!! CTGAAATTTTAAATACTGAT+TGG - chr1_3:73551831-73551850 Msa0139710:three_prime_UTR 20.0%
!!! TAATATTTTCATGAAAGCTA+TGG - chr1_3:73551877-73551896 Msa0139710:intron 20.0%
!!! TAAGTCTTTTGTCTAAAAAA+GGG + chr1_3:73551949-73551968 None:intergenic 20.0%
!!! TTAAGTCTTTTGTCTAAAAA+AGG + chr1_3:73551950-73551969 None:intergenic 20.0%
!! ATTTGAAGAATAGAATCTTT+GGG - chr1_3:73552209-73552228 Msa0139710:intron 20.0%
!!! GGAAAAGAAAAAGTTTATTT+TGG - chr1_3:73552256-73552275 Msa0139710:intron 20.0%
!!! AAGAAAAAGTTTATTTTGGA+AGG - chr1_3:73552260-73552279 Msa0139710:intron 20.0%
!! CTTTGCATATAATTTCAAAA+CGG - chr1_3:73552807-73552826 Msa0139710:intron 20.0%
!! AAAGAATTGTCTAATAAAAG+TGG + chr1_3:73553020-73553039 None:intergenic 20.0%
!!! TTTATTAGACAATTCTTTTC+TGG - chr1_3:73553022-73553041 Msa0139710:three_prime_UTR 20.0%
!!! GTTTATATCTACATTCTTTT+TGG - chr1_3:73553164-73553183 Msa0139710:CDS 20.0%
!! AACTTATATATGCTGAAAAT+TGG + chr1_3:73553372-73553391 None:intergenic 20.0%
!!! GATTTTATTGAAACTTAAGA+AGG - chr1_3:73553563-73553582 Msa0139710:intron 20.0%
!! AATTGAATAAACAAGTTACT+TGG + chr1_3:73553657-73553676 None:intergenic 20.0%
!! AATGTATGTATGTACATTTA+CGG + chr1_3:73554017-73554036 None:intergenic 20.0%
!! AATTATGTTTACAAGAACAT+AGG + chr1_3:73554271-73554290 None:intergenic 20.0%
!! AATATCCAAAAGTTAACTTA+AGG + chr1_3:73554392-73554411 None:intergenic 20.0%
!! AAATAAGAGAAAATTACCAT+AGG + chr1_3:73554671-73554690 None:intergenic 20.0%
! AATGTATGAATGTAAATGGA+AGG + chr1_3:73549890-73549909 None:intergenic 25.0%
!!! TGTTTTTTTAAGTGCTTGTT+TGG - chr1_3:73550107-73550126 Msa0139710:three_prime_UTR 25.0%
!! CATTCTTGTTTATACAATTG+AGG + chr1_3:73550711-73550730 None:intergenic 25.0%
! CAAGATGTAAGATACATATA+TGG - chr1_3:73550760-73550779 Msa0139710:intron 25.0%
! TAACTCATTCTTAGTTATCT+TGG + chr1_3:73550845-73550864 None:intergenic 25.0%
!! ATGAGTTAATTTTTGCTACT+TGG - chr1_3:73550857-73550876 Msa0139710:intron 25.0%
! TGTGTTTCACTAAAACAATT+TGG - chr1_3:73551031-73551050 Msa0139710:intron 25.0%
!! AGTCTGAAATTACTATATTG+TGG - chr1_3:73551077-73551096 Msa0139710:intron 25.0%
!! GTCTGAAATTACTATATTGT+GGG - chr1_3:73551078-73551097 Msa0139710:intron 25.0%
! TTTCACTTAAGATACTTCTA+AGG + chr1_3:73551147-73551166 None:intergenic 25.0%
! AAGATAACTGTAGATAGTAT+AGG - chr1_3:73551308-73551327 Msa0139710:intron 25.0%
!!! TAATTTGACATTTGCTATTC+AGG - chr1_3:73551521-73551540 Msa0139710:intron 25.0%
! TTCAAATGTTAAAAGAATGC+AGG + chr1_3:73551561-73551580 None:intergenic 25.0%
!! AAATGAAAGCTTACACATTT+TGG + chr1_3:73551666-73551685 None:intergenic 25.0%
! TGTAAGCTTTCATTTCAATT+TGG - chr1_3:73551671-73551690 Msa0139710:intron 25.0%
! GCTAATTCTAATGTAAAGAA+TGG - chr1_3:73551769-73551788 Msa0139710:intron 25.0%
!!! ATTTTAAATACTGATTGGCA+AGG - chr1_3:73551836-73551855 Msa0139710:three_prime_UTR 25.0%
!!! TTTTAAATACTGATTGGCAA+GGG - chr1_3:73551837-73551856 Msa0139710:three_prime_UTR 25.0%
! GAAAATATTATGTTGTGCAA+TGG + chr1_3:73551867-73551886 None:intergenic 25.0%
! GATTTGAAGAATAGAATCTT+TGG - chr1_3:73552208-73552227 Msa0139710:intron 25.0%
!! TTTTCTTTTCCACTTGATAA+AGG + chr1_3:73552247-73552266 None:intergenic 25.0%
! ATGCATCTATAAATAAGCTA+AGG - chr1_3:73552873-73552892 Msa0139710:intron 25.0%
!!! ACTATTTTGAACTAGAACAA+AGG + chr1_3:73553065-73553084 None:intergenic 25.0%
! AAATTGGTAAATCAAAACCA+TGG + chr1_3:73553356-73553375 None:intergenic 25.0%
! TTAGATAACATCTTCATCTA+AGG + chr1_3:73553537-73553556 None:intergenic 25.0%
! CATTGAGAAAAATCAGTATA+AGG + chr1_3:73553774-73553793 None:intergenic 25.0%
!!! ACTGATTTTTCTCAATGATA+CGG - chr1_3:73553777-73553796 Msa0139710:intron 25.0%
! ATGTATGTATGTACATTTAC+GGG + chr1_3:73554016-73554035 None:intergenic 25.0%
!! TAATGGTGGAATATATTGAT+CGG - chr1_3:73554093-73554112 Msa0139710:intron 25.0%
! AATATATTAATGTCTTCCTG+CGG + chr1_3:73554193-73554212 None:intergenic 25.0%
! ATTGTAGCTAAAAGTTTACT+CGG - chr1_3:73554898-73554917 Msa0139710:intron 25.0%
! AAAATCTTTCCACCAATTTA+GGG + chr1_3:73555012-73555031 None:intergenic 25.0%
! GTTTATGTTAACGTTATCTA+AGG + chr1_3:73555339-73555358 None:intergenic 25.0%
ATAATGATGAATGATGCAGA+AGG - chr1_3:73549953-73549972 Msa0139710:three_prime_UTR 30.0%
!! TATTTTTCAGTGCTTCTGAT+AGG - chr1_3:73550275-73550294 Msa0139710:three_prime_UTR 30.0%
GCATTATAGAAAGAACTTAC+CGG + chr1_3:73550364-73550383 None:intergenic 30.0%
!!! TATAGGCTTGTTTGTTTTAG+CGG - chr1_3:73550417-73550436 Msa0139710:intron 30.0%
!!! AAGCTAGCTTTTAAAAACCA+CGG - chr1_3:73550470-73550489 Msa0139710:intron 30.0%
! ATAGTCTGTGTTTGTTAAAG+CGG + chr1_3:73550532-73550551 None:intergenic 30.0%
! TTTAAATCATAGAGCATCCT+TGG - chr1_3:73550735-73550754 Msa0139710:three_prime_UTR 30.0%
AGTTGAACAGAATAGTTTCT+AGG + chr1_3:73550813-73550832 None:intergenic 30.0%
TTCTTAGTTATCTTGGTCTA+CGG + chr1_3:73550838-73550857 None:intergenic 30.0%
TTTACCTTCTTGAACAAGAT+TGG - chr1_3:73550890-73550909 Msa0139710:intron 30.0%
CTAATTTCTTTCCCTTGTTA+AGG + chr1_3:73550982-73551001 None:intergenic 30.0%
ATCAGTAAAATACTATGCCA+TGG + chr1_3:73551356-73551375 None:intergenic 30.0%
!!! CATAGTATTTTACTGATTCC+CGG - chr1_3:73551359-73551378 Msa0139710:three_prime_UTR 30.0%
GTTGAGACATAAACCATTAT+TGG - chr1_3:73551634-73551653 Msa0139710:intron 30.0%
! TTGGTTCTTCATTGATAAAC+TGG - chr1_3:73551690-73551709 Msa0139710:intron 30.0%
TACATTAGAATTAGCTCCTT+CGG + chr1_3:73551764-73551783 None:intergenic 30.0%
ACGAGTCTCTTTATGATTAT+CGG + chr1_3:73551809-73551828 None:intergenic 30.0%
CTCATTCAAAACAAGAATCA+AGG - chr1_3:73552102-73552121 Msa0139710:intron 30.0%
ATACGTAATATATCCAACCT+TGG + chr1_3:73552305-73552324 None:intergenic 30.0%
AACAAGCAACTAGAAACATT+GGG + chr1_3:73552328-73552347 None:intergenic 30.0%
AAACAAGCAACTAGAAACAT+TGG + chr1_3:73552329-73552348 None:intergenic 30.0%
TTAAACATATGCCTAAGTGT+CGG - chr1_3:73552832-73552851 Msa0139710:intron 30.0%
ATAATTGAATTCCGACACTT+AGG + chr1_3:73552846-73552865 None:intergenic 30.0%
CAAACAGAGAATTAATCTCA+AGG + chr1_3:73552909-73552928 None:intergenic 30.0%
CTTGAGATTAATTCTCTGTT+TGG - chr1_3:73552907-73552926 Msa0139710:intron 30.0%
! TAGTAGTTCCTTGGTAATAT+TGG - chr1_3:73552949-73552968 Msa0139710:intron 30.0%
AAATACTACCTTGTGAAACA+AGG + chr1_3:73553465-73553484 None:intergenic 30.0%
AAAGCTTGTCAAGAATACTT+TGG + chr1_3:73553607-73553626 None:intergenic 30.0%
TTTACTGTGACAAAAAGTCT+AGG - chr1_3:73553624-73553643 Msa0139710:intron 30.0%
AAGAAATTCCTGCATTTACA+AGG - chr1_3:73553688-73553707 Msa0139710:intron 30.0%
CATGTCAAAGAAAGTTATCT+TGG + chr1_3:73553740-73553759 None:intergenic 30.0%
GAAAAATCAGTATAAGGCTA+TGG + chr1_3:73553768-73553787 None:intergenic 30.0%
AATGTGCAGCTTGATTAAAT+TGG - chr1_3:73554218-73554237 Msa0139710:intron 30.0%
TTTACATTCTATAGTCCAAG+CGG + chr1_3:73554309-73554328 None:intergenic 30.0%
TTAACTTAAGGTCCTAATGA+AGG + chr1_3:73554380-73554399 None:intergenic 30.0%
! TAGGACCTTAAGTTAACTTT+TGG - chr1_3:73554384-73554403 Msa0139710:intron 30.0%
ACAACTCATCAACTCAAATT+TGG - chr1_3:73554586-73554605 Msa0139710:CDS 30.0%
CAACTCATCAACTCAAATTT+GGG - chr1_3:73554587-73554606 Msa0139710:CDS 30.0%
TTTGTAGTTTGAATATGACC+AGG - chr1_3:73554696-73554715 Msa0139710:intron 30.0%
TAACTAACATTCACATTTCC+TGG + chr1_3:73554717-73554736 None:intergenic 30.0%
TAAAGTCATTCTCCCTAAAT+TGG - chr1_3:73554997-73555016 Msa0139710:intron 30.0%
GAAAATCTTTCCACCAATTT+AGG + chr1_3:73555013-73555032 None:intergenic 30.0%
! TACCTGAATTTTGAACTGTA+AGG + chr1_3:73555172-73555191 None:intergenic 30.0%
CTCAATTTGTCTAGCATGTT+TGG + chr1_3:73550190-73550209 None:intergenic 35.0%
CAAACATGCTAGACAAATTG+AGG - chr1_3:73550188-73550207 Msa0139710:three_prime_UTR 35.0%
AACTTACCGGAAATTCATCA+TGG + chr1_3:73550351-73550370 None:intergenic 35.0%
! TGTGAGTTGAGATGATTCAT+TGG - chr1_3:73550612-73550631 Msa0139710:intron 35.0%
GTATCTTACATCTTGTTCCA+AGG + chr1_3:73550755-73550774 None:intergenic 35.0%
CAAACCAATCTTGTTCAAGA+AGG + chr1_3:73550897-73550916 None:intergenic 35.0%
!! CTTGAACAAGATTGGTTTGT+AGG - chr1_3:73550898-73550917 Msa0139710:intron 35.0%
!! CAAGATTGGTTTGTAGGAAA+AGG - chr1_3:73550904-73550923 Msa0139710:intron 35.0%
ACCATATTCCTTGTCAACTT+CGG - chr1_3:73551203-73551222 Msa0139710:intron 35.0%
GATGTTTCAGAACCTATACA+TGG + chr1_3:73551256-73551275 None:intergenic 35.0%
!! TGTATAGGTTCTGAAACATC+TGG - chr1_3:73551256-73551275 Msa0139710:intron 35.0%
!! GTATAGGTTCTGAAACATCT+GGG - chr1_3:73551257-73551276 Msa0139710:intron 35.0%
ACATCTGGGAAGAAAAATGT+TGG - chr1_3:73551271-73551290 Msa0139710:intron 35.0%
CATCTGGGAAGAAAAATGTT+GGG - chr1_3:73551272-73551291 Msa0139710:intron 35.0%
!! GACATTTGCTATTCAGGTAA+TGG - chr1_3:73551527-73551546 Msa0139710:intron 35.0%
GAAGATGCTAAGATATGAGT+AGG - chr1_3:73551578-73551597 Msa0139710:intron 35.0%
AAAATATCTATGAGTAGGCG+TGG - chr1_3:73551612-73551631 Msa0139710:intron 35.0%
!! ATTTTGGCAAAGGCCAATAA+TGG + chr1_3:73551650-73551669 None:intergenic 35.0%
!! AAGCTTACACATTTTGGCAA+AGG + chr1_3:73551660-73551679 None:intergenic 35.0%
ACATTCACAACTAAGCTGTT+AGG - chr1_3:73551730-73551749 Msa0139710:intron 35.0%
TCCTATAAGTTCATGTTGTG+TGG - chr1_3:73551901-73551920 Msa0139710:intron 35.0%
TCCACACAACATGAACTTAT+AGG + chr1_3:73551905-73551924 None:intergenic 35.0%
! AATTGAGTTGCTTGAAGAAG+AGG - chr1_3:73551977-73551996 Msa0139710:three_prime_UTR 35.0%
!! TTTTTGAAGAGTGTGTTAGC+CGG - chr1_3:73552042-73552061 Msa0139710:three_prime_UTR 35.0%
ACACTAGAACTTTGTTCAGA+AGG + chr1_3:73552071-73552090 None:intergenic 35.0%
! TTCTGAACAAAGTTCTAGTG+TGG - chr1_3:73552070-73552089 Msa0139710:intron 35.0%
!!! GATTCTTGTTTTGAATGAGC+TGG + chr1_3:73552101-73552120 None:intergenic 35.0%
AAGCGCTTGAAATTATGCTT+GGG + chr1_3:73552133-73552152 None:intergenic 35.0%
! AAAGCGCTTGAAATTATGCT+TGG + chr1_3:73552134-73552153 None:intergenic 35.0%
! TTTGAAATAAGAGCTTGCAG+AGG + chr1_3:73552184-73552203 None:intergenic 35.0%
TAGGATTAAGGTGAGAATGT+TGG + chr1_3:73552451-73552470 None:intergenic 35.0%
TCTCACCTTAATCCTATGTT+AGG - chr1_3:73552455-73552474 Msa0139710:intron 35.0%
GTGAACCTAACATAGGATTA+AGG + chr1_3:73552463-73552482 None:intergenic 35.0%
!!! TCTTTTAAAGCTCGCAATAC+AGG + chr1_3:73552513-73552532 None:intergenic 35.0%
AATCTGCAGTGGAAATATCT+TGG - chr1_3:73552721-73552740 Msa0139710:three_prime_UTR 35.0%
CTTAACAACTAGTAGTTCCT+TGG - chr1_3:73552940-73552959 Msa0139710:intron 35.0%
CAATCATGCCAATATTACCA+AGG + chr1_3:73552960-73552979 None:intergenic 35.0%
TTCAAAATAGTCAGACTACC+AGG - chr1_3:73553074-73553093 Msa0139710:exon 35.0%
ATAATATGAAGAAGCTGTCC+TGG + chr1_3:73553095-73553114 None:intergenic 35.0%
TGACAGGCATATTTAGCATA+TGG - chr1_3:73553410-73553429 Msa0139710:intron 35.0%
! TTGTTGTTCCTTGTAAATGC+AGG + chr1_3:73553699-73553718 None:intergenic 35.0%
AGAAAGTTATCTTGGAACGA+AGG + chr1_3:73553732-73553751 None:intergenic 35.0%
ACAAAATATCGCTTGCTCTA+TGG + chr1_3:73553936-73553955 None:intergenic 35.0%
CATGTATGAACGAAGTCTAA+TGG - chr1_3:73554076-73554095 Msa0139710:intron 35.0%
GATATGCTTAGACCTTCATT+AGG - chr1_3:73554365-73554384 Msa0139710:intron 35.0%
!! TTCACCACTTTTCTTCCTAA+GGG + chr1_3:73554561-73554580 None:intergenic 35.0%
! TGATGCATTGATGAATCACA+CGG - chr1_3:73554788-73554807 Msa0139710:intron 35.0%
!! ATCAGCATTGATGATATCCT+TGG - chr1_3:73555046-73555065 Msa0139710:intron 35.0%
TGATATCCTTGGATGGATAA+TGG - chr1_3:73555057-73555076 Msa0139710:intron 35.0%
! CATTTTCCATTATCCATCCA+AGG + chr1_3:73555066-73555085 None:intergenic 35.0%
! ATTCAGGTACATGTTTTCGA+AGG - chr1_3:73555183-73555202 Msa0139710:intron 35.0%
AAGCTATGATCTTATTGTCC+CGG - chr1_3:73555217-73555236 Msa0139710:intron 35.0%
TTCACTTTCTTCCTCTCTTC+AGG - chr1_3:73549853-73549872 Msa0139710:three_prime_UTR 40.0%
! GTAAATGGAAGGAAGAGTGT+GGG + chr1_3:73549879-73549898 None:intergenic 40.0%
TGTAAATGGAAGGAAGAGTG+TGG + chr1_3:73549880-73549899 None:intergenic 40.0%
TAGATCGTTTGTGTCGAGTT+TGG + chr1_3:73550018-73550037 None:intergenic 40.0%
GTTTGGTATCGTACTGAGTT+TGG - chr1_3:73550124-73550143 Msa0139710:three_prime_UTR 40.0%
AGGAACTCGAAATTCTCAAG+AGG - chr1_3:73550295-73550314 Msa0139710:three_prime_UTR 40.0%
AACTCGAAATTCTCAAGAGG+CGG - chr1_3:73550298-73550317 Msa0139710:three_prime_UTR 40.0%
GAAAGGCCATGATGAATTTC+CGG - chr1_3:73550342-73550361 Msa0139710:three_prime_UTR 40.0%
CTTCACATAAAACGCCAGTT+TGG + chr1_3:73550453-73550472 None:intergenic 40.0%
! TTTTGTGACATGCACTGTGT+TGG - chr1_3:73550564-73550583 Msa0139710:intron 40.0%
! GGTTTTGCCATGATTTGAAC+AGG - chr1_3:73550633-73550652 Msa0139710:three_prime_UTR 40.0%
CAATTGAGGTTGTCATGCAA+TGG + chr1_3:73550697-73550716 None:intergenic 40.0%
! GGTTTGTAGGAAAAGGCATA+TGG - chr1_3:73550911-73550930 Msa0139710:intron 40.0%
TCCGAAGTTGACAAGGAATA+TGG + chr1_3:73551207-73551226 None:intergenic 40.0%
CATATCAACATAGGAACTCC+GGG + chr1_3:73551380-73551399 None:intergenic 40.0%
GCATATCAACATAGGAACTC+CGG + chr1_3:73551381-73551400 None:intergenic 40.0%
GAGTTCCTATGTTGATATGC+AGG - chr1_3:73551381-73551400 Msa0139710:three_prime_UTR 40.0%
CTCAACCTGCATATCAACAT+AGG + chr1_3:73551389-73551408 None:intergenic 40.0%
! GTGATAAAGTACTTGAGGCT+CGG + chr1_3:73551474-73551493 None:intergenic 40.0%
! TCCAGGTGATAAAGTACTTG+AGG + chr1_3:73551479-73551498 None:intergenic 40.0%
! AGCATGTTCTTGCTATGTAC+AGG - chr1_3:73552015-73552034 Msa0139710:three_prime_UTR 40.0%
CTAGAACTTTGTTCAGAAGG+TGG + chr1_3:73552068-73552087 None:intergenic 40.0%
AGTCATGCTCCTTTATCAAG+TGG - chr1_3:73552235-73552254 Msa0139710:intron 40.0%
AATATATCCAACCTTGGTGG+TGG + chr1_3:73552299-73552318 None:intergenic 40.0%
CGTAATATATCCAACCTTGG+TGG + chr1_3:73552302-73552321 None:intergenic 40.0%
ACTTCTCGTGAACCTAACAT+AGG + chr1_3:73552470-73552489 None:intergenic 40.0%
GTATGGCAACTATGTATTGC+TGG - chr1_3:73552580-73552599 Msa0139710:three_prime_UTR 40.0%
! TATCGGTGACCTACTGTTTT+CGG + chr1_3:73552631-73552650 None:intergenic 40.0%
CTGTTCTTGTAAATCTGCAG+TGG - chr1_3:73552710-73552729 Msa0139710:three_prime_UTR 40.0%
CTGTTCGACTAGAATTCTGA+AGG + chr1_3:73553224-73553243 None:intergenic 40.0%
AAGGGTGAATGTCAGTCAAA+TGG - chr1_3:73553249-73553268 Msa0139710:CDS 40.0%
GTGATCGAAAAATTGCGTTC+TGG - chr1_3:73553275-73553294 Msa0139710:CDS 40.0%
CACACTCATATGAATCACCA+TGG - chr1_3:73553336-73553355 Msa0139710:intron 40.0%
TGAGTACAATTGTGTAGTGC+AGG - chr1_3:73553871-73553890 Msa0139710:CDS 40.0%
CACACATGTGAATTGTTGTC+AGG - chr1_3:73554047-73554066 Msa0139710:intron 40.0%
GTATGAACGAAGTCTAATGG+TGG - chr1_3:73554079-73554098 Msa0139710:intron 40.0%
!! GTTTAGTTTGTTTCTCCGCT+TGG - chr1_3:73554291-73554310 Msa0139710:intron 40.0%
! TGCGTTTTTATCAAACGCAG+TGG - chr1_3:73554513-73554532 Msa0139710:intron 40.0%
!! CTTCACCACTTTTCTTCCTA+AGG + chr1_3:73554562-73554581 None:intergenic 40.0%
TTCGAATCTAAGAGAAGAGC+TGG - chr1_3:73554922-73554941 Msa0139710:intron 40.0%
TGTCTGTAGAAACTCTCTCT+TGG + chr1_3:73554954-73554973 None:intergenic 40.0%
AGTCATTCTCCCTAAATTGG+TGG - chr1_3:73555000-73555019 Msa0139710:intron 40.0%
! GCATTGATGATATCCTTGGA+TGG - chr1_3:73555050-73555069 Msa0139710:intron 40.0%
AGTCGTCTCAGATCATAGAA+TGG - chr1_3:73555143-73555162 Msa0139710:intron 40.0%
GGCCTTACAGTTCAAAATTC+AGG - chr1_3:73555167-73555186 Msa0139710:intron 40.0%
AGCTATGATCTTATTGTCCC+GGG - chr1_3:73555218-73555237 Msa0139710:intron 40.0%
!! ATAACTGGTTTGAGGAAGCT+AGG - chr1_3:73555244-73555263 Msa0139710:intron 40.0%
! AATGATGCAGAAGGAAGTGC+TGG - chr1_3:73549962-73549981 Msa0139710:three_prime_UTR 45.0%
CTCGACACAAACGATCTAAC+AGG - chr1_3:73550020-73550039 Msa0139710:three_prime_UTR 45.0%
! GTGGTGTTTTGCGTTCCATA+GGG - chr1_3:73550320-73550339 Msa0139710:three_prime_UTR 45.0%
! GTTTTGCGTTCCATAGGGAA+AGG - chr1_3:73550325-73550344 Msa0139710:three_prime_UTR 45.0%
TTCATCATGGCCTTTCCCTA+TGG + chr1_3:73550338-73550357 None:intergenic 45.0%
GCGGTGAAAATTGTCCAAAC+TGG - chr1_3:73550436-73550455 Msa0139710:intron 45.0%
! GTCTGTGTTTGTTAAAGCGG+TGG + chr1_3:73550529-73550548 None:intergenic 45.0%
CCTAGAAGAGGCCTTAACAA+GGG - chr1_3:73550968-73550987 Msa0139710:intron 45.0%
! GTTTTCCTGTACGATGACCA+TGG - chr1_3:73551336-73551355 Msa0139710:three_prime_UTR 45.0%
GCATGGATTTCTCCTTCTGT+AGG + chr1_3:73551426-73551445 None:intergenic 45.0%
ATCTTGCTCGAGAGAGCAAT+GGG - chr1_3:73551448-73551467 Msa0139710:intron 45.0%
GCCTCAAGTACTTTATCACC+TGG - chr1_3:73551475-73551494 Msa0139710:intron 45.0%
ACACAGACACTTTGCTTCTC+AGG - chr1_3:73551498-73551517 Msa0139710:intron 45.0%
! GCTATTCAGGTAATGGCCAA+CGG - chr1_3:73551534-73551553 Msa0139710:intron 45.0%
! CTATTCAGGTAATGGCCAAC+GGG - chr1_3:73551535-73551554 Msa0139710:intron 45.0%
TTAAAAGAATGCAGGCCCGT+TGG + chr1_3:73551553-73551572 None:intergenic 45.0%
CTGTTAGGAGTTAGAACCGA+AGG - chr1_3:73551745-73551764 Msa0139710:intron 45.0%
TAGCAAGAACATGCTGTTCG+CGG + chr1_3:73552010-73552029 None:intergenic 45.0%
AACTTTGTTCAGAAGGTGGC+CGG + chr1_3:73552064-73552083 None:intergenic 45.0%
TGAGGAGATGGTGAAGTGTA+TGG - chr1_3:73552563-73552582 Msa0139710:three_prime_UTR 45.0%
GTAGGTCACCGATATTGTCA+AGG - chr1_3:73552637-73552656 Msa0139710:three_prime_UTR 45.0%
GTGGAGGACCTTGACAATAT+CGG + chr1_3:73552648-73552667 None:intergenic 45.0%
AATACTGTGTCGAGGCTGTA+TGG + chr1_3:73552676-73552695 None:intergenic 45.0%
TCCTCTACAATACTGTGTCG+AGG + chr1_3:73552684-73552703 None:intergenic 45.0%
TTCTCATGCTTCTTACGCCA+TGG - chr1_3:73552767-73552786 Msa0139710:three_prime_UTR 45.0%
AACGAACCTGTAGTTGTCCA+TGG + chr1_3:73552787-73552806 None:intergenic 45.0%
TTCTAGTCGAACAGCTCGAA+AGG - chr1_3:73553230-73553249 Msa0139710:CDS 45.0%
TCTAGTCGAACAGCTCGAAA+GGG - chr1_3:73553231-73553250 Msa0139710:CDS 45.0%
! AACTTCCTTTTCCTGCTGAC+AGG - chr1_3:73553394-73553413 Msa0139710:intron 45.0%
ATATGCCTGTCAGCAGGAAA+AGG + chr1_3:73553402-73553421 None:intergenic 45.0%
TGCTAAATATGCCTGTCAGC+AGG + chr1_3:73553408-73553427 None:intergenic 45.0%
GAATTCCCCAAAGCTCTCTA+AGG - chr1_3:73553432-73553451 Msa0139710:intron 45.0%
AACAAATGAGTACCCGTCCA+AGG + chr1_3:73553973-73553992 None:intergenic 45.0%
CGTCTCAGATCATAGAATGG+CGG - chr1_3:73555146-73555165 Msa0139710:intron 45.0%
!! AAAAAATAAAATAAAAATCA+AGG + chr1_3:73550590-73550609 None:intergenic 5.0%
!! TAACTATTTATTTAAAAAAA+AGG + chr1_3:73553821-73553840 None:intergenic 5.0%
TCGAAATTCTCAAGAGGCGG+TGG - chr1_3:73550301-73550320 Msa0139710:three_prime_UTR 50.0%
! GGTGGTGTTTTGCGTTCCAT+AGG - chr1_3:73550319-73550338 Msa0139710:three_prime_UTR 50.0%
AGTGCAAATACCGCGTTACG+AGG + chr1_3:73550505-73550524 None:intergenic 50.0%
CTAGAAGCCCTTGCTGAAAG+TGG + chr1_3:73550664-73550683 None:intergenic 50.0%
CACTTTCAGCAAGGGCTTCT+AGG - chr1_3:73550662-73550681 Msa0139710:three_prime_UTR 50.0%
! CTCTGGAAGTAGCCTAGAAG+AGG - chr1_3:73550956-73550975 Msa0139710:intron 50.0%
GCCTAGAAGAGGCCTTAACA+AGG - chr1_3:73550967-73550986 Msa0139710:intron 50.0%
CCCTTGTTAAGGCCTCTTCT+AGG + chr1_3:73550971-73550990 None:intergenic 50.0%
ACGCATCTCCGAAGTTGACA+AGG + chr1_3:73551214-73551233 None:intergenic 50.0%
CTATGCCATGGTCATCGTAC+AGG + chr1_3:73551344-73551363 None:intergenic 50.0%
GCTACAGCTACACCTACAGA+AGG - chr1_3:73551411-73551430 Msa0139710:intron 50.0%
CATCTTGCTCGAGAGAGCAA+TGG - chr1_3:73551447-73551466 Msa0139710:intron 50.0%
! GAAGCAAAGTGTCTGTGTCC+AGG + chr1_3:73551496-73551515 None:intergenic 50.0%
! TTTTCCCGATTCCACCACCA+AGG - chr1_3:73552285-73552304 Msa0139710:intron 50.0%
!! TCCAACCTTGGTGGTGGAAT+CGG + chr1_3:73552293-73552312 None:intergenic 50.0%
TCTCCTCAGAAAGCCTGCTT+GGG + chr1_3:73552551-73552570 None:intergenic 50.0%
ATCTCCTCAGAAAGCCTGCT+TGG + chr1_3:73552552-73552571 None:intergenic 50.0%
! AAGCAGGCTTTCTGAGGAGA+TGG - chr1_3:73552551-73552570 Msa0139710:three_prime_UTR 50.0%
GCCTCGACACAGTATTGTAG+AGG - chr1_3:73552680-73552699 Msa0139710:three_prime_UTR 50.0%
CTTACGCCATGGACAACTAC+AGG - chr1_3:73552778-73552797 Msa0139710:three_prime_UTR 50.0%
! TTCCCCAAAGCTCTCTAAGG+AGG - chr1_3:73553435-73553454 Msa0139710:intron 50.0%
AGCCTCCTTAGAGAGCTTTG+GGG + chr1_3:73553440-73553459 None:intergenic 50.0%
CAGCCTCCTTAGAGAGCTTT+GGG + chr1_3:73553441-73553460 None:intergenic 50.0%
GTGCAGGCTGCTTACAACAT+TGG - chr1_3:73553887-73553906 Msa0139710:intron 50.0%
CAGGCTGCTTACAACATTGG+CGG - chr1_3:73553890-73553909 Msa0139710:intron 50.0%
CACTGATACTATGTTGCCGC+AGG - chr1_3:73554174-73554193 Msa0139710:intron 50.0%
GCTGCCCTTAGGAAGAAAAG+TGG - chr1_3:73554554-73554573 Msa0139710:CDS 50.0%
GGCAAAGCAGACAAGTGGTT+GGG + chr1_3:73554624-73554643 None:intergenic 50.0%
CAAAGGGCAAAGCAGACAAG+TGG + chr1_3:73554629-73554648 None:intergenic 50.0%
CATAGGATCCGACAATGCTC+CGG + chr1_3:73554654-73554673 None:intergenic 50.0%
! TATTGTCCCGGGAGCATAAC+TGG - chr1_3:73555229-73555248 Msa0139710:intron 50.0%
CTCAAACCAGTTATGCTCCC+GGG + chr1_3:73555238-73555257 None:intergenic 50.0%
CCTCAAACCAGTTATGCTCC+CGG + chr1_3:73555239-73555258 None:intergenic 50.0%
! AAGAGTGTGGGCCTGAAGAG+AGG + chr1_3:73549867-73549886 None:intergenic 55.0%
! TTACGAGGCACTTTCTGCCG+TGG + chr1_3:73550490-73550509 None:intergenic 55.0%
!! GCAGAAAGTGCCTCGTAACG+CGG - chr1_3:73550492-73550511 Msa0139710:intron 55.0%
GGCGACGCCTGTTCAAATCA+TGG + chr1_3:73550643-73550662 None:intergenic 55.0%
TCTCTCGAGCAAGATGCGCA+TGG + chr1_3:73551443-73551462 None:intergenic 55.0%
AAGAGCTTGCAGAGGTCGCA+GGG + chr1_3:73552176-73552195 None:intergenic 55.0%
TAAGAGCTTGCAGAGGTCGC+AGG + chr1_3:73552177-73552196 None:intergenic 55.0%
!! CCAACCTTGGTGGTGGAATC+GGG + chr1_3:73552292-73552311 None:intergenic 55.0%
!! TGCTTGGGCACTGGTGTAGA+TGG + chr1_3:73552536-73552555 None:intergenic 55.0%
ATCTACACCAGTGCCCAAGC+AGG - chr1_3:73552535-73552554 Msa0139710:three_prime_UTR 55.0%
CTGTCCACGCCGAAAACAGT+AGG - chr1_3:73552619-73552638 Msa0139710:three_prime_UTR 55.0%
! GTGACCTACTGTTTTCGGCG+TGG + chr1_3:73552626-73552645 None:intergenic 55.0%
!! AGGCTGTATGGCATTGGTGG+AGG + chr1_3:73552664-73552683 None:intergenic 55.0%
! TCGAGGCTGTATGGCATTGG+TGG + chr1_3:73552667-73552686 None:intergenic 55.0%
GTGTCGAGGCTGTATGGCAT+TGG + chr1_3:73552670-73552689 None:intergenic 55.0%
CCAGCCTCCTTAGAGAGCTT+TGG + chr1_3:73553442-73553461 None:intergenic 55.0%
! CCAAAGCTCTCTAAGGAGGC+TGG - chr1_3:73553439-73553458 Msa0139710:intron 55.0%
!! GAGGCTGGCCTTGTTTCACA+AGG - chr1_3:73553454-73553473 Msa0139710:intron 55.0%
TGTTTCCGAACACCTCGCCT+TGG - chr1_3:73553953-73553972 Msa0139710:intron 55.0%
GTGTTGTGTCTGCTGCCCTT+AGG - chr1_3:73554543-73554562 Msa0139710:CDS 55.0%
GGGCAAAGCAGACAAGTGGT+TGG + chr1_3:73554625-73554644 None:intergenic 55.0%
GTCTGCTTTGCCCTTTGCAC+CGG - chr1_3:73554632-73554651 Msa0139710:intron 55.0%
CGACAATGCTCCGGTGCAAA+GGG + chr1_3:73554645-73554664 None:intergenic 55.0%
!! CCTTTGCACCGGAGCATTGT+CGG - chr1_3:73554643-73554662 Msa0139710:intron 55.0%
!! CGGAGCATTGTCGGATCCTA+TGG - chr1_3:73554652-73554671 Msa0139710:intron 55.0%
!! CCGGGAGCATAACTGGTTTG+AGG - chr1_3:73555236-73555255 Msa0139710:intron 55.0%
! AGGCGTCGCCACTTTCAGCA+AGG - chr1_3:73550653-73550672 Msa0139710:three_prime_UTR 60.0%
! GGCGTCGCCACTTTCAGCAA+GGG - chr1_3:73550654-73550673 Msa0139710:three_prime_UTR 60.0%
AGAGCTTGCAGAGGTCGCAG+GGG + chr1_3:73552175-73552194 None:intergenic 60.0%
CCCGATTCCACCACCAAGGT+TGG - chr1_3:73552289-73552308 Msa0139710:intron 60.0%
CAGAAAGCCTGCTTGGGCAC+TGG + chr1_3:73552545-73552564 None:intergenic 60.0%
GTGCCCAAGCAGGCTTTCTG+AGG - chr1_3:73552545-73552564 Msa0139710:three_prime_UTR 60.0%
TCCGAACACCTCGCCTTGGA+CGG - chr1_3:73553957-73553976 Msa0139710:intron 60.0%
ATGAGTACCCGTCCAAGGCG+AGG + chr1_3:73553968-73553987 None:intergenic 60.0%
CCGACAATGCTCCGGTGCAA+AGG + chr1_3:73554646-73554665 None:intergenic 60.0%
GAGCTTGCAGAGGTCGCAGG+GGG + chr1_3:73552174-73552193 None:intergenic 65.0%
! CCCGTCCAAGGCGAGGTGTT+CGG + chr1_3:73553961-73553980 None:intergenic 65.0%
CCGAACACCTCGCCTTGGAC+GGG - chr1_3:73553958-73553977 Msa0139710:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73549853 73555446 73549853 ID=Msa0139710;Name=Msa0139710
chr1_3 mRNA 73549853 73555446 73549853 ID=Msa0139710-mRNA-1;Parent=Msa0139710;Name=Msa0139710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|0.90|11|1345|216
chr1_3 exon 73549853 73550394 73549853 ID=Msa0139710-mRNA-1:exon:25633;Parent=Msa0139710-mRNA-1
chr1_3 exon 73550626 73550766 73550626 ID=Msa0139710-mRNA-1:exon:25632;Parent=Msa0139710-mRNA-1
chr1_3 exon 73551320 73551406 73551320 ID=Msa0139710-mRNA-1:exon:25631;Parent=Msa0139710-mRNA-1
chr1_3 exon 73551824 73551883 73551824 ID=Msa0139710-mRNA-1:exon:25630;Parent=Msa0139710-mRNA-1
chr1_3 exon 73551972 73552071 73551972 ID=Msa0139710-mRNA-1:exon:25629;Parent=Msa0139710-mRNA-1
chr1_3 exon 73552500 73552822 73552500 ID=Msa0139710-mRNA-1:exon:25628;Parent=Msa0139710-mRNA-1
chr1_3 exon 73552993 73553342 73552993 ID=Msa0139710-mRNA-1:exon:25627;Parent=Msa0139710-mRNA-1
chr1_3 exon 73553780 73553896 73553780 ID=Msa0139710-mRNA-1:exon:25626;Parent=Msa0139710-mRNA-1
chr1_3 exon 73554534 73554644 73554534 ID=Msa0139710-mRNA-1:exon:25625;Parent=Msa0139710-mRNA-1
chr1_3 exon 73554936 73555014 73554936 ID=Msa0139710-mRNA-1:exon:25624;Parent=Msa0139710-mRNA-1
chr1_3 exon 73555258 73555446 73555258 ID=Msa0139710-mRNA-1:exon:25623;Parent=Msa0139710-mRNA-1
chr1_3 five_prime_UTR 73555344 73555446 73555344 ID=Msa0139710-mRNA-1:five_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 CDS 73555258 73555343 73555258 ID=Msa0139710-mRNA-1:cds;Parent=Msa0139710-mRNA-1
chr1_3 CDS 73554936 73555014 73554936 ID=Msa0139710-mRNA-1:cds;Parent=Msa0139710-mRNA-1
chr1_3 CDS 73554534 73554644 73554534 ID=Msa0139710-mRNA-1:cds;Parent=Msa0139710-mRNA-1
chr1_3 CDS 73553780 73553896 73553780 ID=Msa0139710-mRNA-1:cds;Parent=Msa0139710-mRNA-1
chr1_3 CDS 73553085 73553342 73553085 ID=Msa0139710-mRNA-1:cds;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73552993 73553084 73552993 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73552500 73552822 73552500 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73551972 73552071 73551972 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73551824 73551883 73551824 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73551320 73551406 73551320 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73550626 73550766 73550626 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
chr1_3 three_prime_UTR 73549853 73550394 73549853 ID=Msa0139710-mRNA-1:three_prime_utr;Parent=Msa0139710-mRNA-1
Gene Sequence

>Msa0139710

ATGATGAATGATGCAGAAGGAAGTGCTGGATATGTTGTTAACTCTGCGAGTTCTCGACACCAAACTCGACACAAACGATCTAACAGTGCTTCTGATAGGAACTCGAAATTCTCAAGAGGCGGTGGTGTTTTGCGTTCCATAGGGAAAGGCCATGATGAATTTCCGGCGTCGCCACTTTCAGCAAGGGCTTCTAGGATACAAACTCCATTGCATGACAACCTCAATTGTATAAACAAGAATGCTTCTTTAAATCATAGAGCATCCTTGGAACAAGATGTTGAGCAGCTACAGCTACACCTACAGAAGGAGAAATCCATGCGCATCTTGCTCGAGAGAGCAATGGGCCGAGCCTCAAGTACTTTATCACCTGGACACAGACACTTTGCTTCTCAGACAAAAGACTTAATTACTGAAATTGAGTTGCTTGAAGAAGAGGTTACAAGCCGCGAACAGCATGTTCTTGCTATGTACAGGAATATTTTTGAAGAGTGTGTTAGCCGGCCACCTTCTGAACAAAGTTCTAGTGTGGCTTCACCAGCTCATTCAAAACAAGAATCAAGGAAGCACCCAAGCATAATTTCAAGCGCTTTCTGTTCATCAAAAACTTCCCCCTGCGACCTCTGCAAGCTCTTATTTCAAATAACGATTTGA
Protein sequence

>Msa0139710

MMNDAEGSAGYVVNSASSRHQTRHKRSNSASDRNSKFSRGGGVLRSIGKGHDEFPASPLSARASRIQTPLHDNLNCINKNASLNHRASLEQDVEQLQLHLQKEKSMRILLERAMGRASSTLSPGHRHFASQTKDLITEIELLEEEVTSREQHVLAMYRNIFEECVSRPPSEQSSSVASPAHSKQESRKHPSIISSAFCSSKTSPCDLCKLLFQITI*