AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0857080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857080 MtrunA17_Chr5g0435631 95.859 483 13 1 1 483 1 476 0.0 962
Msa0857080 MtrunA17_Chr4g0009431 80.579 484 84 3 1 482 1 476 0.0 817
Msa0857080 MtrunA17_Chr3g0112121 87.387 444 47 3 1 443 1 436 0.0 806
Msa0857080 MtrunA17_Chr2g0334101 48.555 346 164 9 89 426 75 414 1.12e-107 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0857080 AT2G39730.1 78.882 483 92 3 1 482 1 474 0.0 796
Msa0857080 AT2G39730.2 78.049 451 89 3 1 450 1 442 0.0 733
Msa0857080 AT2G39730.3 78.747 447 85 3 1 446 1 438 0.0 731
Msa0857080 AT1G73110.2 55.593 295 122 7 139 426 39 331 1.17e-111 333
Msa0857080 AT1G73110.1 52.866 314 137 8 120 426 119 428 2.77e-110 333

Find 120 sgRNAs with CRISPR-Local

Find 582 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATTGTGTTCTATAGTTT+TGG 0.180442 5_4:-52249391 Msa0857080:three_prime_UTR
TTCCTCTAATTCTTGGTATC+TGG 0.183651 5_4:-52252366 Msa0857080:CDS
TAAGCATTCTGCTATTAATT+AGG 0.221537 5_4:-52249482 Msa0857080:three_prime_UTR
TCTGCTATTAATTAGGTTAA+AGG 0.224226 5_4:-52249475 Msa0857080:three_prime_UTR
TAGAGAAATGTGTATTGTTT+TGG 0.228371 5_4:+52254262 None:intergenic
TTACCATCTTGTTAAAATAT+TGG 0.238870 5_4:-52249414 Msa0857080:three_prime_UTR
TCAATTGGCAGACAAGTATT+TGG 0.252747 5_4:-52250738 Msa0857080:CDS
CTTCAGGTTCCTCTAATTCT+TGG 0.267602 5_4:-52252373 Msa0857080:intron
AAATTACATGCCTTGATATT+AGG 0.286542 5_4:+52252648 None:intergenic
GTTCCAAGTTCATCATTCTT+TGG 0.302261 5_4:-52253520 Msa0857080:CDS
CCAGATGAAACCTTTGTGTT+TGG 0.318881 5_4:+52253466 None:intergenic
CCAATACGATCTTCTCTTGT+AGG 0.327862 5_4:+52251216 None:intergenic
CCAACAAATGTTCAACTTCC+TGG 0.344096 5_4:-52251354 Msa0857080:CDS
ATCAAGAGTGGATCTTACTA+TGG 0.352058 5_4:-52250680 Msa0857080:intron
TCTCCAGCACTCATCATGAT+AGG 0.354239 5_4:+52251579 None:intergenic
TCCTCTAATTCTTGGTATCT+GGG 0.357485 5_4:-52252365 Msa0857080:CDS
TTGGAGAAACTGTTGGAGTA+TGG 0.371448 5_4:-52250800 Msa0857080:CDS
TAAGTGTTGCATTTACCATT+TGG 0.386480 5_4:+52251394 None:intergenic
TTTGGATCCGTACAACCTTC+AGG 0.387004 5_4:+52249571 None:intergenic
CAGTTTCTCCAAAGTCATCT+TGG 0.388317 5_4:+52250811 None:intergenic
CCAAACACAAAGGTTTCATC+TGG 0.389569 5_4:-52253466 Msa0857080:CDS
ATCGTATTGGTGTTTGTAAA+GGG 0.395706 5_4:-52251203 Msa0857080:CDS
CCCCAGATACCAAGAATTAG+AGG 0.399957 5_4:+52252364 None:intergenic
CCAGGAAGTTGAACATTTGT+TGG 0.402105 5_4:+52251354 None:intergenic
GTCGTATGGAGAAATTCTAT+TGG 0.410469 5_4:-52251242 Msa0857080:CDS
CGTGTGCCTATCATTGTTAC+TGG 0.412562 5_4:-52251306 Msa0857080:CDS
CAGATTTCTTTGGTGCACTT+AGG 0.414256 5_4:-52250943 Msa0857080:CDS
AGATTTCTTTGGTGCACTTA+GGG 0.414272 5_4:-52250942 Msa0857080:CDS
AGGCAGAGTCAAGAAGTTCT+TGG 0.414493 5_4:+52252668 None:intergenic
AAGATTGTTGACACTTTCCC+TGG 0.414657 5_4:-52251141 Msa0857080:CDS
CCATCATCACTTCTAGCAGT+TGG 0.419425 5_4:+52249532 None:intergenic
TGATCAACCCAAGATGACTT+TGG 0.420505 5_4:-52250819 Msa0857080:CDS
AAATGTGAAGAGAGTTCAAT+TGG 0.422067 5_4:-52250753 Msa0857080:CDS
TCCGTACAACCTTCAGGAAC+AGG 0.428174 5_4:+52249577 None:intergenic
CAAAGACAGGTGGAGAGGTT+TGG 0.428926 5_4:-52253395 Msa0857080:CDS
CAGTTGAGCTTGAATAGCTC+TGG 0.429062 5_4:-52253556 Msa0857080:CDS
TTGATCATCTGAAATATCAT+AGG 0.430471 5_4:+52253372 None:intergenic
ATACGACCGTCACGAATAAG+AGG 0.436360 5_4:+52251258 None:intergenic
GATCGTATTGGTGTTTGTAA+AGG 0.436492 5_4:-52251204 Msa0857080:CDS
TGAGCTTGTCTTTGCTAAGA+TGG 0.442576 5_4:-52252311 Msa0857080:CDS
TCATTACCAGTAACAATGAT+AGG 0.445482 5_4:+52251300 None:intergenic
CTTTGTCGAATTAGTTTCGC+TGG 0.446692 5_4:+52251531 None:intergenic
CAGGAAGTTGAACATTTGTT+GGG 0.448889 5_4:+52251355 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 5_4:+52253308 None:intergenic
AGTTTCTCCAAAGTCATCTT+GGG 0.451215 5_4:+52250812 None:intergenic
CTTCCAAAGAATGATGAACT+TGG 0.453642 5_4:+52253517 None:intergenic
TCTTATTCGTGACGGTCGTA+TGG 0.454844 5_4:-52251256 Msa0857080:CDS
CATCACAAGAGGGAAGGGTT+TGG 0.456396 5_4:-52253344 Msa0857080:CDS
TACTATAAATTCATTCCCTC+TGG 0.456659 5_4:-52254300 Msa0857080:five_prime_UTR
CATCATCACTTCTAGCAGTT+GGG 0.458963 5_4:+52249533 None:intergenic
TGATGCAGGAGCCGGTCGTA+TGG 0.459178 5_4:-52251445 Msa0857080:CDS
GAGCTAGAAAGTGGAAATGC+AGG 0.469912 5_4:-52251558 Msa0857080:CDS
GAAGTGAGAAAGTGGATTGC+TGG 0.475410 5_4:-52250902 Msa0857080:CDS
AACGATCTTGATGCAGGAGC+CGG 0.476723 5_4:-52251453 Msa0857080:CDS
TTCATAAACGATCTTGATGC+AGG 0.477723 5_4:-52251459 Msa0857080:CDS
CTTGGTATCTGGGGAGGTAA+AGG 0.479768 5_4:-52252355 Msa0857080:CDS
TCTTATGAGTACATTAGTAC+TGG 0.483378 5_4:-52253265 Msa0857080:CDS
TTCCAAGCACCACAAGATGC+TGG 0.484718 5_4:-52253310 Msa0857080:CDS
TCGTATGGAGAAATTCTATT+GGG 0.487732 5_4:-52251241 Msa0857080:CDS
TCCTGTTCCTGAAGGTTGTA+CGG 0.488800 5_4:-52249578 Msa0857080:CDS
CTTGACTCTGCCTAATATCA+AGG 0.490195 5_4:-52252658 Msa0857080:intron
TATTTGGAAGGGGCTGCTCT+TGG 0.494287 5_4:-52250722 Msa0857080:CDS
AACCTTGACAACACCATGGA+TGG 0.505223 5_4:-52252738 Msa0857080:CDS
AGCCCTATCATGATGAGTGC+TGG 0.507079 5_4:-52251582 Msa0857080:CDS
ATCTTGGGTTGATCAAAAGT+TGG 0.516048 5_4:+52250827 None:intergenic
AACTTACCAATGGATTGTCC+AGG 0.517335 5_4:+52251123 None:intergenic
ATGATGATGAAGTGAGAAAG+TGG 0.522348 5_4:-52250910 Msa0857080:CDS
GATGACTTTGGAGAAACTGT+TGG 0.532144 5_4:-52250807 Msa0857080:CDS
GGCAGACAAGTATTTGGAAG+GGG 0.535052 5_4:-52250732 Msa0857080:CDS
GATGCAGGAGCCGGTCGTAT+GGG 0.535411 5_4:-52251444 Msa0857080:CDS
GCAGCAGACATAATACGAAA+AGG 0.536262 5_4:-52251498 Msa0857080:CDS
TAGCAAAGACAAGCTCAGCT+TGG 0.537801 5_4:+52252317 None:intergenic
CTCCAGCACTCATCATGATA+GGG 0.540258 5_4:+52251580 None:intergenic
ATCTTAACAACATCTTCCTC+AGG 0.540943 5_4:+52251159 None:intergenic
GAGCTTGTCTTTGCTAAGAT+GGG 0.542887 5_4:-52252310 Msa0857080:CDS
AACCATCCATGGTGTTGTCA+AGG 0.543770 5_4:+52252736 None:intergenic
GCAAGCAAACTGACAAAGAC+AGG 0.544491 5_4:-52253408 Msa0857080:CDS
CCAACTGCTAGAAGTGATGA+TGG 0.547629 5_4:-52249532 Msa0857080:CDS
ACTTTCCCTGGACAATCCAT+TGG 0.547948 5_4:-52251129 Msa0857080:intron
AAGCTTGTGAACTCAAAAGA+AGG 0.548932 5_4:-52250854 Msa0857080:CDS
CCTCTAATTCTTGGTATCTG+GGG 0.553152 5_4:-52252364 Msa0857080:CDS
TTGGCAGACAAGTATTTGGA+AGG 0.553516 5_4:-52250734 Msa0857080:CDS
GTAAGTATTCCTGTTCCTGA+AGG 0.553834 5_4:-52249586 Msa0857080:CDS
GTGTTGGTATTGAAACCATT+GGG 0.556399 5_4:-52250880 Msa0857080:CDS
TGTTGTTCCACCCATACGAC+CGG 0.556920 5_4:+52251434 None:intergenic
ATTGTGTGCACAATGTTAGT+CGG 0.557256 5_4:-52249363 Msa0857080:three_prime_UTR
ATACACTGTGAACAACCAAA+TGG 0.557588 5_4:-52251409 Msa0857080:CDS
GGTGTTGGTATTGAAACCAT+TGG 0.562217 5_4:-52250881 Msa0857080:CDS
AGCTGAGACTGAGGCAACCA+TGG 0.564992 5_4:+52254215 None:intergenic
CCTACAAGAGAAGATCGTAT+TGG 0.570203 5_4:-52251216 Msa0857080:CDS
GCTATTAATTAGGTTAAAGG+AGG 0.570260 5_4:-52249472 Msa0857080:three_prime_UTR
TCTTCTTTGTTATACATACC+AGG 0.570852 5_4:+52251336 None:intergenic
GCAGGAGCCGGTCGTATGGG+TGG 0.574559 5_4:-52251441 Msa0857080:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.575624 5_4:+52252702 None:intergenic
AGTGCTGGAGAGCTAGAAAG+TGG 0.577837 5_4:-52251567 Msa0857080:CDS
AGAAAGTGGATTGCTGGTGT+TGG 0.579545 5_4:-52250896 Msa0857080:CDS
AGCTCTAACAGCTGAGACTG+AGG 0.584438 5_4:+52254206 None:intergenic
CTAATTCTTGGTATCTGGGG+AGG 0.593707 5_4:-52252361 Msa0857080:CDS
TGGCAGACAAGTATTTGGAA+GGG 0.594237 5_4:-52250733 Msa0857080:CDS
ACAAGACATCACAAGAGGGA+AGG 0.601230 5_4:-52253350 Msa0857080:CDS
ATCTGGGGAGGTAAAGGTCA+AGG 0.603588 5_4:-52252349 Msa0857080:CDS
TTGGGTTGATCAAAAGTTGG+AGG 0.603661 5_4:+52250830 None:intergenic
GGTGAGCAAATTTGTCCAGA+GGG 0.605860 5_4:+52254285 None:intergenic
AATCAAGATGCTATCAAGAG+TGG 0.612496 5_4:-52250692 Msa0857080:CDS
TATGCTCCTCTTATTCGTGA+CGG 0.615800 5_4:-52251264 Msa0857080:CDS
GGGTGAGCAAATTTGTCCAG+AGG 0.616427 5_4:+52254284 None:intergenic
CAAGACATCACAAGAGGGAA+GGG 0.616753 5_4:-52253349 Msa0857080:CDS
CTCGAGGTTTCCAAACACAA+AGG 0.626514 5_4:-52253476 Msa0857080:CDS
TAATGAGTTCCAGCATCTTG+TGG 0.630506 5_4:+52253301 None:intergenic
GATCAACAAGACATCACAAG+AGG 0.631005 5_4:-52253355 Msa0857080:CDS
TAGACATGATAATGTGCCTG+AGG 0.634665 5_4:-52251175 Msa0857080:CDS
CTTTGTGTTTGGAAACCTCG+AGG 0.648452 5_4:+52253477 None:intergenic
ACTGACAAAGACAGGTGGAG+AGG 0.648715 5_4:-52253400 Msa0857080:CDS
AGCAAACTGACAAAGACAGG+TGG 0.656408 5_4:-52253405 Msa0857080:CDS
ACTTACCAATGGATTGTCCA+GGG 0.660480 5_4:+52251124 None:intergenic
GCTTAAAGAAAGTTACCTCG+AGG 0.671149 5_4:-52253492 Msa0857080:CDS
ATCAACAAGACATCACAAGA+GGG 0.675178 5_4:-52253354 Msa0857080:CDS
AATACAACACAACACAGCCA+TGG 0.681220 5_4:-52254232 Msa0857080:exon
TCAGCTGTTAGAGCTGTCAG+TGG 0.687429 5_4:-52254198 Msa0857080:CDS
GTACAACCTTGACAACACCA+TGG 0.736816 5_4:-52252742 Msa0857080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATATGTAATAAAC+TGG + chr5_4:52252938-52252957 None:intergenic 10.0%
!! TTTGTTTATAATAGAAATAA+TGG - chr5_4:52253047-52253066 Msa0857080:intron 10.0%
!! AAAAAACATAGTATATTATA+GGG + chr5_4:52253609-52253628 None:intergenic 10.0%
!! AAAAAAACATAGTATATTAT+AGG + chr5_4:52253610-52253629 None:intergenic 10.0%
!!! TTTTTTTATAAAGACTTTAA+TGG + chr5_4:52253635-52253654 None:intergenic 10.0%
!!! TTTTGAACAAAATATTTATA+AGG - chr5_4:52253834-52253853 Msa0857080:intron 10.0%
!! ATGATTATTCATAAAAAAAA+TGG + chr5_4:52254242-52254261 None:intergenic 10.0%
!! TTATAATATATGTAATAAAC+TGG + chr5_4:52252938-52252957 None:intergenic 10.0%
!! TTTGTTTATAATAGAAATAA+TGG - chr5_4:52253047-52253066 Msa0857080:intron 10.0%
!! AAAAAACATAGTATATTATA+GGG + chr5_4:52253609-52253628 None:intergenic 10.0%
!! AAAAAAACATAGTATATTAT+AGG + chr5_4:52253610-52253629 None:intergenic 10.0%
!!! TTTTTTTATAAAGACTTTAA+TGG + chr5_4:52253635-52253654 None:intergenic 10.0%
!!! TTTTGAACAAAATATTTATA+AGG - chr5_4:52253834-52253853 Msa0857080:intron 10.0%
!! ATGATTATTCATAAAAAAAA+TGG + chr5_4:52254242-52254261 None:intergenic 10.0%
!! TTTATAAATCAAAATACCAT+GGG + chr5_4:52249713-52249732 None:intergenic 15.0%
!! ATTTATAAATCAAAATACCA+TGG + chr5_4:52249714-52249733 None:intergenic 15.0%
!! ATAAATATAGTATGATATGA+CGG - chr5_4:52249728-52249747 Msa0857080:intron 15.0%
!!! CAAATCTTTTTTTTATATGA+AGG - chr5_4:52250770-52250789 Msa0857080:CDS 15.0%
!!! AATATTTTCATAATTTCTTC+AGG - chr5_4:52251176-52251195 Msa0857080:CDS 15.0%
!! TATGTATTTGATTCAAAATT+TGG - chr5_4:52252541-52252560 Msa0857080:intron 15.0%
!!! AAAACATTTAAAGTATGAAT+AGG - chr5_4:52253075-52253094 Msa0857080:intron 15.0%
!!! TATTTAAAAGTAGTTTTGAT+AGG + chr5_4:52253383-52253402 None:intergenic 15.0%
!! TGTTTAGATTGTAAAAAAAA+AGG + chr5_4:52253451-52253470 None:intergenic 15.0%
!!! TAATGTAACCTTTTTTTTAT+TGG - chr5_4:52253926-52253945 Msa0857080:intron 15.0%
!! TAGAAAATCCAATAAAAAAA+AGG + chr5_4:52253937-52253956 None:intergenic 15.0%
!! TTTATAAATCAAAATACCAT+GGG + chr5_4:52249713-52249732 None:intergenic 15.0%
!! ATTTATAAATCAAAATACCA+TGG + chr5_4:52249714-52249733 None:intergenic 15.0%
!! ATAAATATAGTATGATATGA+CGG - chr5_4:52249728-52249747 Msa0857080:intron 15.0%
!!! CAAATCTTTTTTTTATATGA+AGG - chr5_4:52250770-52250789 Msa0857080:CDS 15.0%
!!! AATATTTTCATAATTTCTTC+AGG - chr5_4:52251176-52251195 Msa0857080:CDS 15.0%
!! TATGTATTTGATTCAAAATT+TGG - chr5_4:52252541-52252560 Msa0857080:intron 15.0%
!!! AAAACATTTAAAGTATGAAT+AGG - chr5_4:52253075-52253094 Msa0857080:intron 15.0%
!!! TATTTAAAAGTAGTTTTGAT+AGG + chr5_4:52253383-52253402 None:intergenic 15.0%
!! TGTTTAGATTGTAAAAAAAA+AGG + chr5_4:52253451-52253470 None:intergenic 15.0%
!!! TAATGTAACCTTTTTTTTAT+TGG - chr5_4:52253926-52253945 Msa0857080:intron 15.0%
!! TAGAAAATCCAATAAAAAAA+AGG + chr5_4:52253937-52253956 None:intergenic 15.0%
!! AAAATAATTGATAAGTAGCT+AGG + chr5_4:52249413-52249432 None:intergenic 20.0%
!! CAAATAATGATTCAAATGTT+TGG - chr5_4:52249558-52249577 Msa0857080:CDS 20.0%
!!! ATAGCATTTGAGTAAATTTT+CGG - chr5_4:52249767-52249786 Msa0857080:intron 20.0%
!!! ATTTTAATAGTACATAAGAG+TGG - chr5_4:52249793-52249812 Msa0857080:intron 20.0%
!!! ATCTTTTTTTTATATGAAGG+TGG - chr5_4:52250773-52250792 Msa0857080:CDS 20.0%
!! ATTATTATTCATGTAGATCA+TGG - chr5_4:52250957-52250976 Msa0857080:intron 20.0%
!!! TGTTGTGAATTTTTATATTG+CGG - chr5_4:52251014-52251033 Msa0857080:intron 20.0%
!!! TTTTTGGAACAATTAATTGA+TGG - chr5_4:52251317-52251336 Msa0857080:CDS 20.0%
!! TGAAAAATAGACGTAATTAA+AGG - chr5_4:52251647-52251666 Msa0857080:intron 20.0%
!!! TTAATTTTTGCAGATTTCTT+TGG - chr5_4:52252612-52252631 Msa0857080:intron 20.0%
!! AACAAAAGTTGTATTCATTA+TGG + chr5_4:52253033-52253052 None:intergenic 20.0%
!!! ATATTTTTTTTCACCGATAA+AGG - chr5_4:52253413-52253432 Msa0857080:CDS 20.0%
!!! TATTTTTTTTCACCGATAAA+GGG - chr5_4:52253414-52253433 Msa0857080:CDS 20.0%
!! TATTATAAAGAGTTTGATGT+GGG + chr5_4:52253537-52253556 None:intergenic 20.0%
!! ATATTATAAAGAGTTTGATG+TGG + chr5_4:52253538-52253557 None:intergenic 20.0%
!!! TTTTGCTTCTTTCTAATAAA+AGG - chr5_4:52253680-52253699 Msa0857080:intron 20.0%
!! TCTAATAAAAGGCAAATTAT+AGG - chr5_4:52253691-52253710 Msa0857080:intron 20.0%
!! CTAATAAAAGGCAAATTATA+GGG - chr5_4:52253692-52253711 Msa0857080:intron 20.0%
!!! TATTTTTTTTTCCTCCATTT+TGG + chr5_4:52253797-52253816 None:intergenic 20.0%
!! TTACCATCTTGTTAAAATAT+TGG - chr5_4:52254151-52254170 Msa0857080:intron 20.0%
!!! AATCCAATATTTTAACAAGA+TGG + chr5_4:52254157-52254176 None:intergenic 20.0%
!!! ATTATTGTGTTCTATAGTTT+TGG - chr5_4:52254174-52254193 Msa0857080:intron 20.0%
!!! TTATTGTGTTCTATAGTTTT+GGG - chr5_4:52254175-52254194 Msa0857080:intron 20.0%
!! AAAATAATTGATAAGTAGCT+AGG + chr5_4:52249413-52249432 None:intergenic 20.0%
!! CAAATAATGATTCAAATGTT+TGG - chr5_4:52249558-52249577 Msa0857080:CDS 20.0%
!!! ATAGCATTTGAGTAAATTTT+CGG - chr5_4:52249767-52249786 Msa0857080:intron 20.0%
!!! ATTTTAATAGTACATAAGAG+TGG - chr5_4:52249793-52249812 Msa0857080:intron 20.0%
!!! ATCTTTTTTTTATATGAAGG+TGG - chr5_4:52250773-52250792 Msa0857080:CDS 20.0%
!! ATTATTATTCATGTAGATCA+TGG - chr5_4:52250957-52250976 Msa0857080:intron 20.0%
!!! TGTTGTGAATTTTTATATTG+CGG - chr5_4:52251014-52251033 Msa0857080:intron 20.0%
!!! TTTTTGGAACAATTAATTGA+TGG - chr5_4:52251317-52251336 Msa0857080:CDS 20.0%
!! TGAAAAATAGACGTAATTAA+AGG - chr5_4:52251647-52251666 Msa0857080:intron 20.0%
!!! TTAATTTTTGCAGATTTCTT+TGG - chr5_4:52252612-52252631 Msa0857080:intron 20.0%
!! AACAAAAGTTGTATTCATTA+TGG + chr5_4:52253033-52253052 None:intergenic 20.0%
!!! ATATTTTTTTTCACCGATAA+AGG - chr5_4:52253413-52253432 Msa0857080:CDS 20.0%
!!! TATTTTTTTTCACCGATAAA+GGG - chr5_4:52253414-52253433 Msa0857080:CDS 20.0%
!! TATTATAAAGAGTTTGATGT+GGG + chr5_4:52253537-52253556 None:intergenic 20.0%
!! ATATTATAAAGAGTTTGATG+TGG + chr5_4:52253538-52253557 None:intergenic 20.0%
!!! TTTTGCTTCTTTCTAATAAA+AGG - chr5_4:52253680-52253699 Msa0857080:intron 20.0%
!! TCTAATAAAAGGCAAATTAT+AGG - chr5_4:52253691-52253710 Msa0857080:intron 20.0%
!! CTAATAAAAGGCAAATTATA+GGG - chr5_4:52253692-52253711 Msa0857080:intron 20.0%
!!! TATTTTTTTTTCCTCCATTT+TGG + chr5_4:52253797-52253816 None:intergenic 20.0%
!! TTACCATCTTGTTAAAATAT+TGG - chr5_4:52254151-52254170 Msa0857080:intron 20.0%
!!! AATCCAATATTTTAACAAGA+TGG + chr5_4:52254157-52254176 None:intergenic 20.0%
!!! ATTATTGTGTTCTATAGTTT+TGG - chr5_4:52254174-52254193 Msa0857080:intron 20.0%
!!! TTATTGTGTTCTATAGTTTT+GGG - chr5_4:52254175-52254194 Msa0857080:intron 20.0%
!! AGAGAAATGTGTATTGTTTT+GGG + chr5_4:52249305-52249324 None:intergenic 25.0%
!! TAGAGAAATGTGTATTGTTT+TGG + chr5_4:52249306-52249325 None:intergenic 25.0%
!! AGAATTTTCTTTTTACCGTA+GGG + chr5_4:52249600-52249619 None:intergenic 25.0%
!! TAGAATTTTCTTTTTACCGT+AGG + chr5_4:52249601-52249620 None:intergenic 25.0%
!! TTGATCATCTGAAATATCAT+AGG + chr5_4:52250196-52250215 None:intergenic 25.0%
!!! AGAATTTTTCAAGAAACATG+TGG - chr5_4:52250444-52250463 Msa0857080:intron 25.0%
!!! TTTTTTTTATATGAAGGTGG+TGG - chr5_4:52250776-52250795 Msa0857080:CDS 25.0%
! AAATTACATGCCTTGATATT+AGG + chr5_4:52250920-52250939 None:intergenic 25.0%
!!! TAGATCATGGTTTTAAATTG+TGG - chr5_4:52250970-52250989 Msa0857080:intron 25.0%
! CATCAAAATTCTTTATACTG+AGG - chr5_4:52251064-52251083 Msa0857080:intron 25.0%
!!! AAGAGTTTCAATTTTGGAAA+TGG + chr5_4:52251298-52251317 None:intergenic 25.0%
!! CCAAAAAAGAGTTTCAATTT+TGG + chr5_4:52251304-52251323 None:intergenic 25.0%
!!! CCAAAATTGAAACTCTTTTT+TGG - chr5_4:52251301-52251320 Msa0857080:CDS 25.0%
!!! TTGAAGCTATGATTTTTTCT+AGG + chr5_4:52251369-52251388 None:intergenic 25.0%
! AAAATCATAGCTTCAAATCA+AGG - chr5_4:52251373-52251392 Msa0857080:CDS 25.0%
!!! CAAATCAAGGTTTTGTAAAA+CGG - chr5_4:52251386-52251405 Msa0857080:CDS 25.0%
! ATTAATACATCATCATCAGA+TGG + chr5_4:52251916-52251935 None:intergenic 25.0%
! CTCTTATATATAAGATCGAA+GGG + chr5_4:52252501-52252520 None:intergenic 25.0%
! TCTCTTATATATAAGATCGA+AGG + chr5_4:52252502-52252521 None:intergenic 25.0%
! CTTATATATAAGAGAAAGTG+CGG - chr5_4:52252507-52252526 Msa0857080:intron 25.0%
! CTGTTGAACAAAAGAATAAT+TGG - chr5_4:52252578-52252597 Msa0857080:intron 25.0%
!!! GTATGAATAGGTATTGATTT+AGG - chr5_4:52253087-52253106 Msa0857080:intron 25.0%
! AATGATTTACTTATCCTTGA+AGG + chr5_4:52253119-52253138 None:intergenic 25.0%
! TTCAAGGATAAGTAAATCAT+TGG - chr5_4:52253118-52253137 Msa0857080:intron 25.0%
!! GGTAAAGTTTTACAAACAAT+TGG - chr5_4:52253139-52253158 Msa0857080:intron 25.0%
!! AAGTTTTACAAACAATTGGA+AGG - chr5_4:52253143-52253162 Msa0857080:intron 25.0%
! ATGAGAATCTATCTATATTC+AGG + chr5_4:52253333-52253352 None:intergenic 25.0%
!! CTCAAAAAAGTATGTATGAT+TGG - chr5_4:52253887-52253906 Msa0857080:intron 25.0%
!! TTTTATTGGATTTTCTATGC+AGG - chr5_4:52253940-52253959 Msa0857080:intron 25.0%
! TAAGCATTCTGCTATTAATT+AGG - chr5_4:52254083-52254102 Msa0857080:intron 25.0%
! TCTGCTATTAATTAGGTTAA+AGG - chr5_4:52254090-52254109 Msa0857080:intron 25.0%
!! AGAGAAATGTGTATTGTTTT+GGG + chr5_4:52249305-52249324 None:intergenic 25.0%
!! TAGAGAAATGTGTATTGTTT+TGG + chr5_4:52249306-52249325 None:intergenic 25.0%
!! AGAATTTTCTTTTTACCGTA+GGG + chr5_4:52249600-52249619 None:intergenic 25.0%
!! TAGAATTTTCTTTTTACCGT+AGG + chr5_4:52249601-52249620 None:intergenic 25.0%
!! TTGATCATCTGAAATATCAT+AGG + chr5_4:52250196-52250215 None:intergenic 25.0%
!!! AGAATTTTTCAAGAAACATG+TGG - chr5_4:52250444-52250463 Msa0857080:intron 25.0%
!!! TTTTTTTTATATGAAGGTGG+TGG - chr5_4:52250776-52250795 Msa0857080:CDS 25.0%
! AAATTACATGCCTTGATATT+AGG + chr5_4:52250920-52250939 None:intergenic 25.0%
!!! TAGATCATGGTTTTAAATTG+TGG - chr5_4:52250970-52250989 Msa0857080:intron 25.0%
! CATCAAAATTCTTTATACTG+AGG - chr5_4:52251064-52251083 Msa0857080:intron 25.0%
!!! AAGAGTTTCAATTTTGGAAA+TGG + chr5_4:52251298-52251317 None:intergenic 25.0%
!! CCAAAAAAGAGTTTCAATTT+TGG + chr5_4:52251304-52251323 None:intergenic 25.0%
!!! CCAAAATTGAAACTCTTTTT+TGG - chr5_4:52251301-52251320 Msa0857080:CDS 25.0%
!!! TTGAAGCTATGATTTTTTCT+AGG + chr5_4:52251369-52251388 None:intergenic 25.0%
! AAAATCATAGCTTCAAATCA+AGG - chr5_4:52251373-52251392 Msa0857080:CDS 25.0%
!!! CAAATCAAGGTTTTGTAAAA+CGG - chr5_4:52251386-52251405 Msa0857080:CDS 25.0%
! ATTAATACATCATCATCAGA+TGG + chr5_4:52251916-52251935 None:intergenic 25.0%
! CTCTTATATATAAGATCGAA+GGG + chr5_4:52252501-52252520 None:intergenic 25.0%
! TCTCTTATATATAAGATCGA+AGG + chr5_4:52252502-52252521 None:intergenic 25.0%
! CTTATATATAAGAGAAAGTG+CGG - chr5_4:52252507-52252526 Msa0857080:intron 25.0%
! CTGTTGAACAAAAGAATAAT+TGG - chr5_4:52252578-52252597 Msa0857080:intron 25.0%
!!! GTATGAATAGGTATTGATTT+AGG - chr5_4:52253087-52253106 Msa0857080:intron 25.0%
! AATGATTTACTTATCCTTGA+AGG + chr5_4:52253119-52253138 None:intergenic 25.0%
! TTCAAGGATAAGTAAATCAT+TGG - chr5_4:52253118-52253137 Msa0857080:intron 25.0%
!! GGTAAAGTTTTACAAACAAT+TGG - chr5_4:52253139-52253158 Msa0857080:intron 25.0%
!! AAGTTTTACAAACAATTGGA+AGG - chr5_4:52253143-52253162 Msa0857080:intron 25.0%
! ATGAGAATCTATCTATATTC+AGG + chr5_4:52253333-52253352 None:intergenic 25.0%
!! CTCAAAAAAGTATGTATGAT+TGG - chr5_4:52253887-52253906 Msa0857080:intron 25.0%
!! TTTTATTGGATTTTCTATGC+AGG - chr5_4:52253940-52253959 Msa0857080:intron 25.0%
! TAAGCATTCTGCTATTAATT+AGG - chr5_4:52254083-52254102 Msa0857080:intron 25.0%
! TCTGCTATTAATTAGGTTAA+AGG - chr5_4:52254090-52254109 Msa0857080:intron 25.0%
TACTATAAATTCATTCCCTC+TGG - chr5_4:52249265-52249284 Msa0857080:three_prime_UTR 30.0%
!! GAGAAATGTGTATTGTTTTG+GGG + chr5_4:52249304-52249323 None:intergenic 30.0%
! TGATTCAAATGTTTGGAATC+TGG - chr5_4:52249565-52249584 Msa0857080:CDS 30.0%
! AAATGTTTGGAATCTGGATT+TGG - chr5_4:52249571-52249590 Msa0857080:CDS 30.0%
! TACATCTCAGTTGACTTAAT+TGG - chr5_4:52249653-52249672 Msa0857080:intron 30.0%
! TCAGTTGACTTAATTGGTAT+CGG - chr5_4:52249659-52249678 Msa0857080:intron 30.0%
TAAATCAAAATACCATGGGT+TGG + chr5_4:52249709-52249728 None:intergenic 30.0%
! CTAAAGTATCAGTTCTACTT+AGG + chr5_4:52249825-52249844 None:intergenic 30.0%
TATTACCAATGTCTACGTAT+AGG - chr5_4:52249944-52249963 Msa0857080:intron 30.0%
TCTTATGAGTACATTAGTAC+TGG - chr5_4:52250300-52250319 Msa0857080:intron 30.0%
AATTCACAACATAACTGCAA+CGG + chr5_4:52251005-52251024 None:intergenic 30.0%
! CTATTTTATTCGAGTCTTAG+TGG + chr5_4:52251145-52251164 None:intergenic 30.0%
TTAAAGGTAACCTCATATGT+CGG - chr5_4:52251663-52251682 Msa0857080:intron 30.0%
! TAAGTGTTGCATTTACCATT+TGG + chr5_4:52252174-52252193 None:intergenic 30.0%
! TCTTCTTTGTTATACATACC+AGG + chr5_4:52252232-52252251 None:intergenic 30.0%
TCATTACCAGTAACAATGAT+AGG + chr5_4:52252268-52252287 None:intergenic 30.0%
TCGTATGGAGAAATTCTATT+GGG - chr5_4:52252324-52252343 Msa0857080:CDS 30.0%
! ATCGTATTGGTGTTTGTAAA+GGG - chr5_4:52252362-52252381 Msa0857080:CDS 30.0%
! TCTTCACATTTTCTTGTTCT+TGG + chr5_4:52252803-52252822 None:intergenic 30.0%
AAATGTGAAGAGAGTTCAAT+TGG - chr5_4:52252812-52252831 Msa0857080:intron 30.0%
!! TCCTAAGTTCAATTTTGATG+CGG + chr5_4:52253564-52253583 None:intergenic 30.0%
AAAGAAGCAAAAGATATTGC+AGG + chr5_4:52253672-52253691 None:intergenic 30.0%
GAATCAATCATAGACCAAAA+TGG - chr5_4:52253780-52253799 Msa0857080:intron 30.0%
GCTATTAATTAGGTTAAAGG+AGG - chr5_4:52254093-52254112 Msa0857080:intron 30.0%
TACTATAAATTCATTCCCTC+TGG - chr5_4:52249265-52249284 Msa0857080:three_prime_UTR 30.0%
!! GAGAAATGTGTATTGTTTTG+GGG + chr5_4:52249304-52249323 None:intergenic 30.0%
! TGATTCAAATGTTTGGAATC+TGG - chr5_4:52249565-52249584 Msa0857080:CDS 30.0%
! AAATGTTTGGAATCTGGATT+TGG - chr5_4:52249571-52249590 Msa0857080:CDS 30.0%
! TACATCTCAGTTGACTTAAT+TGG - chr5_4:52249653-52249672 Msa0857080:intron 30.0%
! TCAGTTGACTTAATTGGTAT+CGG - chr5_4:52249659-52249678 Msa0857080:intron 30.0%
TAAATCAAAATACCATGGGT+TGG + chr5_4:52249709-52249728 None:intergenic 30.0%
! CTAAAGTATCAGTTCTACTT+AGG + chr5_4:52249825-52249844 None:intergenic 30.0%
TATTACCAATGTCTACGTAT+AGG - chr5_4:52249944-52249963 Msa0857080:intron 30.0%
TCTTATGAGTACATTAGTAC+TGG - chr5_4:52250300-52250319 Msa0857080:intron 30.0%
AATTCACAACATAACTGCAA+CGG + chr5_4:52251005-52251024 None:intergenic 30.0%
! CTATTTTATTCGAGTCTTAG+TGG + chr5_4:52251145-52251164 None:intergenic 30.0%
TTAAAGGTAACCTCATATGT+CGG - chr5_4:52251663-52251682 Msa0857080:intron 30.0%
! TAAGTGTTGCATTTACCATT+TGG + chr5_4:52252174-52252193 None:intergenic 30.0%
! TCTTCTTTGTTATACATACC+AGG + chr5_4:52252232-52252251 None:intergenic 30.0%
TCATTACCAGTAACAATGAT+AGG + chr5_4:52252268-52252287 None:intergenic 30.0%
TCGTATGGAGAAATTCTATT+GGG - chr5_4:52252324-52252343 Msa0857080:CDS 30.0%
! ATCGTATTGGTGTTTGTAAA+GGG - chr5_4:52252362-52252381 Msa0857080:CDS 30.0%
! TCTTCACATTTTCTTGTTCT+TGG + chr5_4:52252803-52252822 None:intergenic 30.0%
AAATGTGAAGAGAGTTCAAT+TGG - chr5_4:52252812-52252831 Msa0857080:intron 30.0%
!! TCCTAAGTTCAATTTTGATG+CGG + chr5_4:52253564-52253583 None:intergenic 30.0%
AAAGAAGCAAAAGATATTGC+AGG + chr5_4:52253672-52253691 None:intergenic 30.0%
GAATCAATCATAGACCAAAA+TGG - chr5_4:52253780-52253799 Msa0857080:intron 30.0%
GCTATTAATTAGGTTAAAGG+AGG - chr5_4:52254093-52254112 Msa0857080:intron 30.0%
AGCTAGGTAAAGTAACATAC+TGG + chr5_4:52249397-52249416 None:intergenic 35.0%
GATGTACGATCTTAATAGGA+CGG + chr5_4:52249639-52249658 None:intergenic 35.0%
CTGAGATGTACGATCTTAAT+AGG + chr5_4:52249643-52249662 None:intergenic 35.0%
! CAGTTGACTTAATTGGTATC+GGG - chr5_4:52249660-52249679 Msa0857080:intron 35.0%
TATAGTATGATATGACGGTC+TGG - chr5_4:52249733-52249752 Msa0857080:intron 35.0%
GTTCCAAGTTCATCATTCTT+TGG - chr5_4:52250045-52250064 Msa0857080:intron 35.0%
CTTCCAAAGAATGATGAACT+TGG + chr5_4:52250051-52250070 None:intergenic 35.0%
ATCAACAAGACATCACAAGA+GGG - chr5_4:52250211-52250230 Msa0857080:intron 35.0%
! TGCTCTTTAAAAACCAAACC+AGG - chr5_4:52250607-52250626 Msa0857080:intron 35.0%
TTGTGCAGTTCCAATTCAAT+CGG + chr5_4:52250668-52250687 None:intergenic 35.0%
GTTCAATTGGTTGAATTGTC+TGG - chr5_4:52250719-52250738 Msa0857080:CDS 35.0%
ATTGGTTGAATTGTCTGGTT+CGG - chr5_4:52250724-52250743 Msa0857080:CDS 35.0%
ACCATGTATGATGGTATTTC+AGG - chr5_4:52250801-52250820 Msa0857080:CDS 35.0%
ACCTGAAATACCATCATACA+TGG + chr5_4:52250805-52250824 None:intergenic 35.0%
TGCAATGTAAAAACCATCCA+TGG + chr5_4:52250843-52250862 None:intergenic 35.0%
!! TTACATTGCACCTGCTTTTA+TGG - chr5_4:52250853-52250872 Msa0857080:CDS 35.0%
TTGATGTCTTTACACGTCAT+CGG + chr5_4:52251050-52251069 None:intergenic 35.0%
CAGTATATGCTTCAATTGCA+TGG + chr5_4:52251122-52251141 None:intergenic 35.0%
TTCCTCTAATTCTTGGTATC+TGG - chr5_4:52251199-52251218 Msa0857080:CDS 35.0%
TCCTCTAATTCTTGGTATCT+GGG - chr5_4:52251200-52251219 Msa0857080:CDS 35.0%
AACACTCACACATTTGGATT+GGG + chr5_4:52251858-52251877 None:intergenic 35.0%
TAACACTCACACATTTGGAT+TGG + chr5_4:52251859-52251878 None:intergenic 35.0%
GCTGGAATTGTCAAATCATA+TGG + chr5_4:52251966-52251985 None:intergenic 35.0%
TTCATAAACGATCTTGATGC+AGG - chr5_4:52252106-52252125 Msa0857080:intron 35.0%
ATACACTGTGAACAACCAAA+TGG - chr5_4:52252156-52252175 Msa0857080:intron 35.0%
CAGGAAGTTGAACATTTGTT+GGG + chr5_4:52252213-52252232 None:intergenic 35.0%
GTCGTATGGAGAAATTCTAT+TGG - chr5_4:52252323-52252342 Msa0857080:CDS 35.0%
! GATCGTATTGGTGTTTGTAA+AGG - chr5_4:52252361-52252380 Msa0857080:CDS 35.0%
ATCTTAACAACATCTTCCTC+AGG + chr5_4:52252409-52252428 None:intergenic 35.0%
TCTAGAAGAGAACTTACCAA+TGG + chr5_4:52252455-52252474 None:intergenic 35.0%
! AGATTTCTTTGGTGCACTTA+GGG - chr5_4:52252623-52252642 Msa0857080:intron 35.0%
! ATGATGATGAAGTGAGAAAG+TGG - chr5_4:52252655-52252674 Msa0857080:intron 35.0%
! GTGTTGGTATTGAAACCATT+GGG - chr5_4:52252685-52252704 Msa0857080:CDS 35.0%
AAGCTTGTGAACTCAAAAGA+AGG - chr5_4:52252711-52252730 Msa0857080:CDS 35.0%
!! ATCTTGGGTTGATCAAAAGT+TGG + chr5_4:52252741-52252760 None:intergenic 35.0%
AGTTTCTCCAAAGTCATCTT+GGG + chr5_4:52252756-52252775 None:intergenic 35.0%
TCAATTGGCAGACAAGTATT+TGG - chr5_4:52252827-52252846 Msa0857080:intron 35.0%
AATCAAGATGCTATCAAGAG+TGG - chr5_4:52252873-52252892 Msa0857080:intron 35.0%
ATCAAGAGTGGATCTTACTA+TGG - chr5_4:52252885-52252904 Msa0857080:intron 35.0%
GATTTAGGAAAAGTCCTTCA+AGG - chr5_4:52253102-52253121 Msa0857080:intron 35.0%
TGTTAACCGTTCAATGTGTT+AGG + chr5_4:52253223-52253242 None:intergenic 35.0%
CGTACACATTAAAGGACTTT+AGG + chr5_4:52253257-52253276 None:intergenic 35.0%
! GACTGTTTGTTACCCTTTAT+CGG + chr5_4:52253429-52253448 None:intergenic 35.0%
ACCGCATCAAAATTGAACTT+AGG - chr5_4:52253560-52253579 Msa0857080:CDS 35.0%
AAAGGCAAATTATAGGGACT+AGG - chr5_4:52253698-52253717 Msa0857080:intron 35.0%
TCAATCATAGACCAAAATGG+AGG - chr5_4:52253783-52253802 Msa0857080:intron 35.0%
! TTGGATTTTCTATGCAGGTA+AGG - chr5_4:52253945-52253964 Msa0857080:intron 35.0%
ATTGTGTGCACAATGTTAGT+CGG - chr5_4:52254202-52254221 Msa0857080:CDS 35.0%
AGCTAGGTAAAGTAACATAC+TGG + chr5_4:52249397-52249416 None:intergenic 35.0%
GATGTACGATCTTAATAGGA+CGG + chr5_4:52249639-52249658 None:intergenic 35.0%
CTGAGATGTACGATCTTAAT+AGG + chr5_4:52249643-52249662 None:intergenic 35.0%
! CAGTTGACTTAATTGGTATC+GGG - chr5_4:52249660-52249679 Msa0857080:intron 35.0%
TATAGTATGATATGACGGTC+TGG - chr5_4:52249733-52249752 Msa0857080:intron 35.0%
GTTCCAAGTTCATCATTCTT+TGG - chr5_4:52250045-52250064 Msa0857080:intron 35.0%
CTTCCAAAGAATGATGAACT+TGG + chr5_4:52250051-52250070 None:intergenic 35.0%
ATCAACAAGACATCACAAGA+GGG - chr5_4:52250211-52250230 Msa0857080:intron 35.0%
! TGCTCTTTAAAAACCAAACC+AGG - chr5_4:52250607-52250626 Msa0857080:intron 35.0%
TTGTGCAGTTCCAATTCAAT+CGG + chr5_4:52250668-52250687 None:intergenic 35.0%
GTTCAATTGGTTGAATTGTC+TGG - chr5_4:52250719-52250738 Msa0857080:CDS 35.0%
ATTGGTTGAATTGTCTGGTT+CGG - chr5_4:52250724-52250743 Msa0857080:CDS 35.0%
ACCATGTATGATGGTATTTC+AGG - chr5_4:52250801-52250820 Msa0857080:CDS 35.0%
ACCTGAAATACCATCATACA+TGG + chr5_4:52250805-52250824 None:intergenic 35.0%
TGCAATGTAAAAACCATCCA+TGG + chr5_4:52250843-52250862 None:intergenic 35.0%
!! TTACATTGCACCTGCTTTTA+TGG - chr5_4:52250853-52250872 Msa0857080:CDS 35.0%
TTGATGTCTTTACACGTCAT+CGG + chr5_4:52251050-52251069 None:intergenic 35.0%
CAGTATATGCTTCAATTGCA+TGG + chr5_4:52251122-52251141 None:intergenic 35.0%
TTCCTCTAATTCTTGGTATC+TGG - chr5_4:52251199-52251218 Msa0857080:CDS 35.0%
TCCTCTAATTCTTGGTATCT+GGG - chr5_4:52251200-52251219 Msa0857080:CDS 35.0%
AACACTCACACATTTGGATT+GGG + chr5_4:52251858-52251877 None:intergenic 35.0%
TAACACTCACACATTTGGAT+TGG + chr5_4:52251859-52251878 None:intergenic 35.0%
GCTGGAATTGTCAAATCATA+TGG + chr5_4:52251966-52251985 None:intergenic 35.0%
TTCATAAACGATCTTGATGC+AGG - chr5_4:52252106-52252125 Msa0857080:intron 35.0%
ATACACTGTGAACAACCAAA+TGG - chr5_4:52252156-52252175 Msa0857080:intron 35.0%
CAGGAAGTTGAACATTTGTT+GGG + chr5_4:52252213-52252232 None:intergenic 35.0%
GTCGTATGGAGAAATTCTAT+TGG - chr5_4:52252323-52252342 Msa0857080:CDS 35.0%
! GATCGTATTGGTGTTTGTAA+AGG - chr5_4:52252361-52252380 Msa0857080:CDS 35.0%
ATCTTAACAACATCTTCCTC+AGG + chr5_4:52252409-52252428 None:intergenic 35.0%
TCTAGAAGAGAACTTACCAA+TGG + chr5_4:52252455-52252474 None:intergenic 35.0%
! AGATTTCTTTGGTGCACTTA+GGG - chr5_4:52252623-52252642 Msa0857080:intron 35.0%
! ATGATGATGAAGTGAGAAAG+TGG - chr5_4:52252655-52252674 Msa0857080:intron 35.0%
! GTGTTGGTATTGAAACCATT+GGG - chr5_4:52252685-52252704 Msa0857080:CDS 35.0%
AAGCTTGTGAACTCAAAAGA+AGG - chr5_4:52252711-52252730 Msa0857080:CDS 35.0%
!! ATCTTGGGTTGATCAAAAGT+TGG + chr5_4:52252741-52252760 None:intergenic 35.0%
AGTTTCTCCAAAGTCATCTT+GGG + chr5_4:52252756-52252775 None:intergenic 35.0%
TCAATTGGCAGACAAGTATT+TGG - chr5_4:52252827-52252846 Msa0857080:intron 35.0%
AATCAAGATGCTATCAAGAG+TGG - chr5_4:52252873-52252892 Msa0857080:intron 35.0%
ATCAAGAGTGGATCTTACTA+TGG - chr5_4:52252885-52252904 Msa0857080:intron 35.0%
GATTTAGGAAAAGTCCTTCA+AGG - chr5_4:52253102-52253121 Msa0857080:intron 35.0%
TGTTAACCGTTCAATGTGTT+AGG + chr5_4:52253223-52253242 None:intergenic 35.0%
CGTACACATTAAAGGACTTT+AGG + chr5_4:52253257-52253276 None:intergenic 35.0%
! GACTGTTTGTTACCCTTTAT+CGG + chr5_4:52253429-52253448 None:intergenic 35.0%
ACCGCATCAAAATTGAACTT+AGG - chr5_4:52253560-52253579 Msa0857080:CDS 35.0%
AAAGGCAAATTATAGGGACT+AGG - chr5_4:52253698-52253717 Msa0857080:intron 35.0%
TCAATCATAGACCAAAATGG+AGG - chr5_4:52253783-52253802 Msa0857080:intron 35.0%
! TTGGATTTTCTATGCAGGTA+AGG - chr5_4:52253945-52253964 Msa0857080:intron 35.0%
ATTGTGTGCACAATGTTAGT+CGG - chr5_4:52254202-52254221 Msa0857080:CDS 35.0%
AATACAACACAACACAGCCA+TGG - chr5_4:52249333-52249352 Msa0857080:three_prime_UTR 40.0%
ATCTGGATTTGGATTCCCTA+CGG - chr5_4:52249582-52249601 Msa0857080:CDS 40.0%
TGACACCTATACGTAGACAT+TGG + chr5_4:52249952-52249971 None:intergenic 40.0%
TCATGTCTGATGTGTCTCAT+AGG - chr5_4:52249969-52249988 Msa0857080:intron 40.0%
GCTTAAAGAAAGTTACCTCG+AGG - chr5_4:52250073-52250092 Msa0857080:intron 40.0%
CCAGATGAAACCTTTGTGTT+TGG + chr5_4:52250102-52250121 None:intergenic 40.0%
CCAAACACAAAGGTTTCATC+TGG - chr5_4:52250099-52250118 Msa0857080:intron 40.0%
GATCAACAAGACATCACAAG+AGG - chr5_4:52250210-52250229 Msa0857080:intron 40.0%
TAATGAGTTCCAGCATCTTG+TGG + chr5_4:52250267-52250286 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr5_4:52250497-52250516 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr5_4:52250531-52250550 Msa0857080:intron 40.0%
CATGGTTCAACCGATTGAAT+TGG - chr5_4:52250655-52250674 Msa0857080:intron 40.0%
! GAGCTGGTTCATAGTTCAAT+TGG - chr5_4:52250706-52250725 Msa0857080:CDS 40.0%
!! TTGAATTGTCTGGTTCGGTT+CGG - chr5_4:52250729-52250748 Msa0857080:CDS 40.0%
!!! CGGTTCGGTTTTTGAAAGAT+TGG - chr5_4:52250744-52250763 Msa0857080:CDS 40.0%
ACAAGCTTGTCCATAAAAGC+AGG + chr5_4:52250866-52250885 None:intergenic 40.0%
CTTGACTCTGCCTAATATCA+AGG - chr5_4:52250907-52250926 Msa0857080:CDS 40.0%
! CTTCAGGTTCCTCTAATTCT+TGG - chr5_4:52251192-52251211 Msa0857080:CDS 40.0%
CCTCTAATTCTTGGTATCTG+GGG - chr5_4:52251201-52251220 Msa0857080:CDS 40.0%
TGAGCTTGTCTTTGCTAAGA+TGG - chr5_4:52251254-52251273 Msa0857080:CDS 40.0%
GAGCTTGTCTTTGCTAAGAT+GGG - chr5_4:52251255-52251274 Msa0857080:CDS 40.0%
! GTAAAACGGTTTTGCAACCA+CGG - chr5_4:52251400-52251419 Msa0857080:CDS 40.0%
TGACGTTGCAAATATAACCG+TGG + chr5_4:52251420-52251439 None:intergenic 40.0%
CACTGCATTGCGAAAAATTG+TGG + chr5_4:52251506-52251525 None:intergenic 40.0%
GACTGTGCCTATTTACAATC+CGG + chr5_4:52251691-52251710 None:intergenic 40.0%
AGGCACAGTCAAATATACCT+TGG - chr5_4:52251701-52251720 Msa0857080:intron 40.0%
!!! CCAGATTTTAAAGCGGATCT+TGG + chr5_4:52251786-52251805 None:intergenic 40.0%
!! CCAAGATCCGCTTTAAAATC+TGG - chr5_4:52251783-52251802 Msa0857080:intron 40.0%
!! GAACGGTCCAGATTTTAAAG+CGG + chr5_4:52251793-52251812 None:intergenic 40.0%
GGCTGTCAACAAAGATAGAA+CGG + chr5_4:52251810-52251829 None:intergenic 40.0%
GTGTCTAACACTCACACATT+TGG + chr5_4:52251864-52251883 None:intergenic 40.0%
AATGTGTGAGTGTTAGACAC+CGG - chr5_4:52251864-52251883 Msa0857080:intron 40.0%
TGTTAGACACCGGTAAATGT+CGG - chr5_4:52251874-52251893 Msa0857080:intron 40.0%
! GTTTTGTGTCCGACATTTAC+CGG + chr5_4:52251886-52251905 None:intergenic 40.0%
! CTTTGTCGAATTAGTTTCGC+TGG + chr5_4:52252037-52252056 None:intergenic 40.0%
GCAGCAGACATAATACGAAA+AGG - chr5_4:52252067-52252086 Msa0857080:intron 40.0%
CCAGGAAGTTGAACATTTGT+TGG + chr5_4:52252214-52252233 None:intergenic 40.0%
CCAACAAATGTTCAACTTCC+TGG - chr5_4:52252211-52252230 Msa0857080:intron 40.0%
TATGCTCCTCTTATTCGTGA+CGG - chr5_4:52252301-52252320 Msa0857080:intron 40.0%
CCAATACGATCTTCTCTTGT+AGG + chr5_4:52252352-52252371 None:intergenic 40.0%
CCTACAAGAGAAGATCGTAT+TGG - chr5_4:52252349-52252368 Msa0857080:CDS 40.0%
! TAGACATGATAATGTGCCTG+AGG - chr5_4:52252390-52252409 Msa0857080:intron 40.0%
AAGATTGTTGACACTTTCCC+TGG - chr5_4:52252424-52252443 Msa0857080:intron 40.0%
!! ACTTACCAATGGATTGTCCA+GGG + chr5_4:52252444-52252463 None:intergenic 40.0%
!! AACTTACCAATGGATTGTCC+AGG + chr5_4:52252445-52252464 None:intergenic 40.0%
TTGTTCAACAGTCGATGTGT+CGG + chr5_4:52252569-52252588 None:intergenic 40.0%
! CAGATTTCTTTGGTGCACTT+AGG - chr5_4:52252622-52252641 Msa0857080:intron 40.0%
!! GGTGTTGGTATTGAAACCAT+TGG - chr5_4:52252684-52252703 Msa0857080:CDS 40.0%
!! GTTCACAAGCTTTTTCCCAA+TGG + chr5_4:52252703-52252722 None:intergenic 40.0%
!! TTGGGTTGATCAAAAGTTGG+AGG + chr5_4:52252738-52252757 None:intergenic 40.0%
TGATCAACCCAAGATGACTT+TGG - chr5_4:52252746-52252765 Msa0857080:intron 40.0%
CAGTTTCTCCAAAGTCATCT+TGG + chr5_4:52252757-52252776 None:intergenic 40.0%
! GATGACTTTGGAGAAACTGT+TGG - chr5_4:52252758-52252777 Msa0857080:intron 40.0%
TTGGAGAAACTGTTGGAGTA+TGG - chr5_4:52252765-52252784 Msa0857080:intron 40.0%
TTGGCAGACAAGTATTTGGA+AGG - chr5_4:52252831-52252850 Msa0857080:intron 40.0%
TGGCAGACAAGTATTTGGAA+GGG - chr5_4:52252832-52252851 Msa0857080:intron 40.0%
ATTGGAAGGAGAAAGATGCA+AGG - chr5_4:52253157-52253176 Msa0857080:intron 40.0%
CTTCGACCTAACACATTGAA+CGG - chr5_4:52253214-52253233 Msa0857080:intron 40.0%
GTCCTTTAATGTGTACGATC+AGG - chr5_4:52253260-52253279 Msa0857080:CDS 40.0%
TGCCTGATCGTACACATTAA+AGG + chr5_4:52253265-52253284 None:intergenic 40.0%
ATTATAGGGACTAGGTACCA+AGG - chr5_4:52253706-52253725 Msa0857080:intron 40.0%
GTAAGTATTCCTGTTCCTGA+AGG - chr5_4:52253979-52253998 Msa0857080:intron 40.0%
CATCATCACTTCTAGCAGTT+GGG + chr5_4:52254035-52254054 None:intergenic 40.0%
AATACAACACAACACAGCCA+TGG - chr5_4:52249333-52249352 Msa0857080:three_prime_UTR 40.0%
ATCTGGATTTGGATTCCCTA+CGG - chr5_4:52249582-52249601 Msa0857080:CDS 40.0%
TGACACCTATACGTAGACAT+TGG + chr5_4:52249952-52249971 None:intergenic 40.0%
TCATGTCTGATGTGTCTCAT+AGG - chr5_4:52249969-52249988 Msa0857080:intron 40.0%
GCTTAAAGAAAGTTACCTCG+AGG - chr5_4:52250073-52250092 Msa0857080:intron 40.0%
CCAGATGAAACCTTTGTGTT+TGG + chr5_4:52250102-52250121 None:intergenic 40.0%
CCAAACACAAAGGTTTCATC+TGG - chr5_4:52250099-52250118 Msa0857080:intron 40.0%
GATCAACAAGACATCACAAG+AGG - chr5_4:52250210-52250229 Msa0857080:intron 40.0%
TAATGAGTTCCAGCATCTTG+TGG + chr5_4:52250267-52250286 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr5_4:52250497-52250516 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr5_4:52250531-52250550 Msa0857080:intron 40.0%
CATGGTTCAACCGATTGAAT+TGG - chr5_4:52250655-52250674 Msa0857080:intron 40.0%
! GAGCTGGTTCATAGTTCAAT+TGG - chr5_4:52250706-52250725 Msa0857080:CDS 40.0%
!! TTGAATTGTCTGGTTCGGTT+CGG - chr5_4:52250729-52250748 Msa0857080:CDS 40.0%
!!! CGGTTCGGTTTTTGAAAGAT+TGG - chr5_4:52250744-52250763 Msa0857080:CDS 40.0%
ACAAGCTTGTCCATAAAAGC+AGG + chr5_4:52250866-52250885 None:intergenic 40.0%
CTTGACTCTGCCTAATATCA+AGG - chr5_4:52250907-52250926 Msa0857080:CDS 40.0%
! CTTCAGGTTCCTCTAATTCT+TGG - chr5_4:52251192-52251211 Msa0857080:CDS 40.0%
CCTCTAATTCTTGGTATCTG+GGG - chr5_4:52251201-52251220 Msa0857080:CDS 40.0%
TGAGCTTGTCTTTGCTAAGA+TGG - chr5_4:52251254-52251273 Msa0857080:CDS 40.0%
GAGCTTGTCTTTGCTAAGAT+GGG - chr5_4:52251255-52251274 Msa0857080:CDS 40.0%
! GTAAAACGGTTTTGCAACCA+CGG - chr5_4:52251400-52251419 Msa0857080:CDS 40.0%
TGACGTTGCAAATATAACCG+TGG + chr5_4:52251420-52251439 None:intergenic 40.0%
CACTGCATTGCGAAAAATTG+TGG + chr5_4:52251506-52251525 None:intergenic 40.0%
GACTGTGCCTATTTACAATC+CGG + chr5_4:52251691-52251710 None:intergenic 40.0%
AGGCACAGTCAAATATACCT+TGG - chr5_4:52251701-52251720 Msa0857080:intron 40.0%
!!! CCAGATTTTAAAGCGGATCT+TGG + chr5_4:52251786-52251805 None:intergenic 40.0%
!! CCAAGATCCGCTTTAAAATC+TGG - chr5_4:52251783-52251802 Msa0857080:intron 40.0%
!! GAACGGTCCAGATTTTAAAG+CGG + chr5_4:52251793-52251812 None:intergenic 40.0%
GGCTGTCAACAAAGATAGAA+CGG + chr5_4:52251810-52251829 None:intergenic 40.0%
GTGTCTAACACTCACACATT+TGG + chr5_4:52251864-52251883 None:intergenic 40.0%
AATGTGTGAGTGTTAGACAC+CGG - chr5_4:52251864-52251883 Msa0857080:intron 40.0%
TGTTAGACACCGGTAAATGT+CGG - chr5_4:52251874-52251893 Msa0857080:intron 40.0%
! GTTTTGTGTCCGACATTTAC+CGG + chr5_4:52251886-52251905 None:intergenic 40.0%
! CTTTGTCGAATTAGTTTCGC+TGG + chr5_4:52252037-52252056 None:intergenic 40.0%
GCAGCAGACATAATACGAAA+AGG - chr5_4:52252067-52252086 Msa0857080:intron 40.0%
CCAGGAAGTTGAACATTTGT+TGG + chr5_4:52252214-52252233 None:intergenic 40.0%
CCAACAAATGTTCAACTTCC+TGG - chr5_4:52252211-52252230 Msa0857080:intron 40.0%
TATGCTCCTCTTATTCGTGA+CGG - chr5_4:52252301-52252320 Msa0857080:intron 40.0%
CCAATACGATCTTCTCTTGT+AGG + chr5_4:52252352-52252371 None:intergenic 40.0%
CCTACAAGAGAAGATCGTAT+TGG - chr5_4:52252349-52252368 Msa0857080:CDS 40.0%
! TAGACATGATAATGTGCCTG+AGG - chr5_4:52252390-52252409 Msa0857080:intron 40.0%
AAGATTGTTGACACTTTCCC+TGG - chr5_4:52252424-52252443 Msa0857080:intron 40.0%
!! ACTTACCAATGGATTGTCCA+GGG + chr5_4:52252444-52252463 None:intergenic 40.0%
!! AACTTACCAATGGATTGTCC+AGG + chr5_4:52252445-52252464 None:intergenic 40.0%
TTGTTCAACAGTCGATGTGT+CGG + chr5_4:52252569-52252588 None:intergenic 40.0%
! CAGATTTCTTTGGTGCACTT+AGG - chr5_4:52252622-52252641 Msa0857080:intron 40.0%
!! GGTGTTGGTATTGAAACCAT+TGG - chr5_4:52252684-52252703 Msa0857080:CDS 40.0%
!! GTTCACAAGCTTTTTCCCAA+TGG + chr5_4:52252703-52252722 None:intergenic 40.0%
!! TTGGGTTGATCAAAAGTTGG+AGG + chr5_4:52252738-52252757 None:intergenic 40.0%
TGATCAACCCAAGATGACTT+TGG - chr5_4:52252746-52252765 Msa0857080:intron 40.0%
CAGTTTCTCCAAAGTCATCT+TGG + chr5_4:52252757-52252776 None:intergenic 40.0%
! GATGACTTTGGAGAAACTGT+TGG - chr5_4:52252758-52252777 Msa0857080:intron 40.0%
TTGGAGAAACTGTTGGAGTA+TGG - chr5_4:52252765-52252784 Msa0857080:intron 40.0%
TTGGCAGACAAGTATTTGGA+AGG - chr5_4:52252831-52252850 Msa0857080:intron 40.0%
TGGCAGACAAGTATTTGGAA+GGG - chr5_4:52252832-52252851 Msa0857080:intron 40.0%
ATTGGAAGGAGAAAGATGCA+AGG - chr5_4:52253157-52253176 Msa0857080:intron 40.0%
CTTCGACCTAACACATTGAA+CGG - chr5_4:52253214-52253233 Msa0857080:intron 40.0%
GTCCTTTAATGTGTACGATC+AGG - chr5_4:52253260-52253279 Msa0857080:CDS 40.0%
TGCCTGATCGTACACATTAA+AGG + chr5_4:52253265-52253284 None:intergenic 40.0%
ATTATAGGGACTAGGTACCA+AGG - chr5_4:52253706-52253725 Msa0857080:intron 40.0%
GTAAGTATTCCTGTTCCTGA+AGG - chr5_4:52253979-52253998 Msa0857080:intron 40.0%
CATCATCACTTCTAGCAGTT+GGG + chr5_4:52254035-52254054 None:intergenic 40.0%
GGTGAGCAAATTTGTCCAGA+GGG + chr5_4:52249283-52249302 None:intergenic 45.0%
! GACTTAATTGGTATCGGGCA+AGG - chr5_4:52249665-52249684 Msa0857080:intron 45.0%
CAGTTGAGCTTGAATAGCTC+TGG - chr5_4:52250009-52250028 Msa0857080:intron 45.0%
CTTTGTGTTTGGAAACCTCG+AGG + chr5_4:52250091-52250110 None:intergenic 45.0%
CTCGAGGTTTCCAAACACAA+AGG - chr5_4:52250089-52250108 Msa0857080:intron 45.0%
GCAAGCAAACTGACAAAGAC+AGG - chr5_4:52250157-52250176 Msa0857080:intron 45.0%
AGCAAACTGACAAAGACAGG+TGG - chr5_4:52250160-52250179 Msa0857080:intron 45.0%
ACAAGACATCACAAGAGGGA+AGG - chr5_4:52250215-52250234 Msa0857080:intron 45.0%
CAAGACATCACAAGAGGGAA+GGG - chr5_4:52250216-52250235 Msa0857080:intron 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr5_4:52250503-52250522 None:intergenic 45.0%
CTATTTGCCACAATTCGAGG+AGG + chr5_4:52250520-52250539 None:intergenic 45.0%
GCACTATTTGCCACAATTCG+AGG + chr5_4:52250523-52250542 None:intergenic 45.0%
AATTGAACCGTAGACAGAGC+TGG - chr5_4:52250690-52250709 Msa0857080:CDS 45.0%
CTATGAACCAGCTCTGTCTA+CGG + chr5_4:52250700-52250719 None:intergenic 45.0%
GTACAACCTTGACAACACCA+TGG - chr5_4:52250823-52250842 Msa0857080:CDS 45.0%
AACCTTGACAACACCATGGA+TGG - chr5_4:52250827-52250846 Msa0857080:CDS 45.0%
!! AACCATCCATGGTGTTGTCA+AGG + chr5_4:52250832-52250851 None:intergenic 45.0%
AGGCAGAGTCAAGAAGTTCT+TGG + chr5_4:52250900-52250919 None:intergenic 45.0%
CCCCAGATACCAAGAATTAG+AGG + chr5_4:52251204-52251223 None:intergenic 45.0%
CTAATTCTTGGTATCTGGGG+AGG - chr5_4:52251204-52251223 Msa0857080:CDS 45.0%
TAGCAAAGACAAGCTCAGCT+TGG + chr5_4:52251251-52251270 None:intergenic 45.0%
GTAACCTCATATGTCGGATC+CGG - chr5_4:52251669-52251688 Msa0857080:intron 45.0%
GTCGGATCCGGATTGTAAAT+AGG - chr5_4:52251681-52251700 Msa0857080:intron 45.0%
TGATCTTGATTGGACGACCA+AGG + chr5_4:52251721-52251740 None:intergenic 45.0%
GTCGTCCAATCAAGATCAGA+CGG - chr5_4:52251723-52251742 Msa0857080:intron 45.0%
CTAGACCGTCTGATCTTGAT+TGG + chr5_4:52251731-52251750 None:intergenic 45.0%
CTCCAGCACTCATCATGATA+GGG + chr5_4:52251988-52252007 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+AGG + chr5_4:52251989-52252008 None:intergenic 45.0%
GAGCTAGAAAGTGGAAATGC+AGG - chr5_4:52252007-52252026 Msa0857080:intron 45.0%
CGTGTGCCTATCATTGTTAC+TGG - chr5_4:52252259-52252278 Msa0857080:intron 45.0%
ATACGACCGTCACGAATAAG+AGG + chr5_4:52252310-52252329 None:intergenic 45.0%
TCTTATTCGTGACGGTCGTA+TGG - chr5_4:52252309-52252328 Msa0857080:CDS 45.0%
ACTTTCCCTGGACAATCCAT+TGG - chr5_4:52252436-52252455 Msa0857080:intron 45.0%
TGTTCAACAGTCGATGTGTC+GGG + chr5_4:52252568-52252587 None:intergenic 45.0%
!! GAAGTGAGAAAGTGGATTGC+TGG - chr5_4:52252663-52252682 Msa0857080:CDS 45.0%
!! AGAAAGTGGATTGCTGGTGT+TGG - chr5_4:52252669-52252688 Msa0857080:CDS 45.0%
GGCAGACAAGTATTTGGAAG+GGG - chr5_4:52252833-52252852 Msa0857080:intron 45.0%
CGAATCACGAGTCTAGACAT+AGG + chr5_4:52253193-52253212 None:intergenic 45.0%
TGTGTACGATCAGGCACAAT+CGG - chr5_4:52253269-52253288 Msa0857080:CDS 45.0%
TCCTGTTCCTGAAGGTTGTA+CGG - chr5_4:52253987-52254006 Msa0857080:intron 45.0%
TTTGGATCCGTACAACCTTC+AGG + chr5_4:52253997-52254016 None:intergenic 45.0%
!!! GGGTCGAAGTTTTTGGCATT+TGG + chr5_4:52254015-52254034 None:intergenic 45.0%
! AGCAGTTGGGTCGAAGTTTT+TGG + chr5_4:52254022-52254041 None:intergenic 45.0%
CCATCATCACTTCTAGCAGT+TGG + chr5_4:52254036-52254055 None:intergenic 45.0%
CCAACTGCTAGAAGTGATGA+TGG - chr5_4:52254033-52254052 Msa0857080:intron 45.0%
GGTGAGCAAATTTGTCCAGA+GGG + chr5_4:52249283-52249302 None:intergenic 45.0%
! GACTTAATTGGTATCGGGCA+AGG - chr5_4:52249665-52249684 Msa0857080:intron 45.0%
CAGTTGAGCTTGAATAGCTC+TGG - chr5_4:52250009-52250028 Msa0857080:intron 45.0%
CTTTGTGTTTGGAAACCTCG+AGG + chr5_4:52250091-52250110 None:intergenic 45.0%
CTCGAGGTTTCCAAACACAA+AGG - chr5_4:52250089-52250108 Msa0857080:intron 45.0%
GCAAGCAAACTGACAAAGAC+AGG - chr5_4:52250157-52250176 Msa0857080:intron 45.0%
AGCAAACTGACAAAGACAGG+TGG - chr5_4:52250160-52250179 Msa0857080:intron 45.0%
ACAAGACATCACAAGAGGGA+AGG - chr5_4:52250215-52250234 Msa0857080:intron 45.0%
CAAGACATCACAAGAGGGAA+GGG - chr5_4:52250216-52250235 Msa0857080:intron 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr5_4:52250503-52250522 None:intergenic 45.0%
CTATTTGCCACAATTCGAGG+AGG + chr5_4:52250520-52250539 None:intergenic 45.0%
GCACTATTTGCCACAATTCG+AGG + chr5_4:52250523-52250542 None:intergenic 45.0%
AATTGAACCGTAGACAGAGC+TGG - chr5_4:52250690-52250709 Msa0857080:CDS 45.0%
CTATGAACCAGCTCTGTCTA+CGG + chr5_4:52250700-52250719 None:intergenic 45.0%
GTACAACCTTGACAACACCA+TGG - chr5_4:52250823-52250842 Msa0857080:CDS 45.0%
AACCTTGACAACACCATGGA+TGG - chr5_4:52250827-52250846 Msa0857080:CDS 45.0%
!! AACCATCCATGGTGTTGTCA+AGG + chr5_4:52250832-52250851 None:intergenic 45.0%
AGGCAGAGTCAAGAAGTTCT+TGG + chr5_4:52250900-52250919 None:intergenic 45.0%
CCCCAGATACCAAGAATTAG+AGG + chr5_4:52251204-52251223 None:intergenic 45.0%
CTAATTCTTGGTATCTGGGG+AGG - chr5_4:52251204-52251223 Msa0857080:CDS 45.0%
TAGCAAAGACAAGCTCAGCT+TGG + chr5_4:52251251-52251270 None:intergenic 45.0%
GTAACCTCATATGTCGGATC+CGG - chr5_4:52251669-52251688 Msa0857080:intron 45.0%
GTCGGATCCGGATTGTAAAT+AGG - chr5_4:52251681-52251700 Msa0857080:intron 45.0%
TGATCTTGATTGGACGACCA+AGG + chr5_4:52251721-52251740 None:intergenic 45.0%
GTCGTCCAATCAAGATCAGA+CGG - chr5_4:52251723-52251742 Msa0857080:intron 45.0%
CTAGACCGTCTGATCTTGAT+TGG + chr5_4:52251731-52251750 None:intergenic 45.0%
CTCCAGCACTCATCATGATA+GGG + chr5_4:52251988-52252007 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+AGG + chr5_4:52251989-52252008 None:intergenic 45.0%
GAGCTAGAAAGTGGAAATGC+AGG - chr5_4:52252007-52252026 Msa0857080:intron 45.0%
CGTGTGCCTATCATTGTTAC+TGG - chr5_4:52252259-52252278 Msa0857080:intron 45.0%
ATACGACCGTCACGAATAAG+AGG + chr5_4:52252310-52252329 None:intergenic 45.0%
TCTTATTCGTGACGGTCGTA+TGG - chr5_4:52252309-52252328 Msa0857080:CDS 45.0%
ACTTTCCCTGGACAATCCAT+TGG - chr5_4:52252436-52252455 Msa0857080:intron 45.0%
TGTTCAACAGTCGATGTGTC+GGG + chr5_4:52252568-52252587 None:intergenic 45.0%
!! GAAGTGAGAAAGTGGATTGC+TGG - chr5_4:52252663-52252682 Msa0857080:CDS 45.0%
!! AGAAAGTGGATTGCTGGTGT+TGG - chr5_4:52252669-52252688 Msa0857080:CDS 45.0%
GGCAGACAAGTATTTGGAAG+GGG - chr5_4:52252833-52252852 Msa0857080:intron 45.0%
CGAATCACGAGTCTAGACAT+AGG + chr5_4:52253193-52253212 None:intergenic 45.0%
TGTGTACGATCAGGCACAAT+CGG - chr5_4:52253269-52253288 Msa0857080:CDS 45.0%
TCCTGTTCCTGAAGGTTGTA+CGG - chr5_4:52253987-52254006 Msa0857080:intron 45.0%
TTTGGATCCGTACAACCTTC+AGG + chr5_4:52253997-52254016 None:intergenic 45.0%
!!! GGGTCGAAGTTTTTGGCATT+TGG + chr5_4:52254015-52254034 None:intergenic 45.0%
! AGCAGTTGGGTCGAAGTTTT+TGG + chr5_4:52254022-52254041 None:intergenic 45.0%
CCATCATCACTTCTAGCAGT+TGG + chr5_4:52254036-52254055 None:intergenic 45.0%
CCAACTGCTAGAAGTGATGA+TGG - chr5_4:52254033-52254052 Msa0857080:intron 45.0%
!!! TTTTTTAAATCTAAAATATT+TGG + chr5_4:52251762-52251781 None:intergenic 5.0%
!!! TTTTTTAAATCTAAAATATT+TGG + chr5_4:52251762-52251781 None:intergenic 5.0%
GGGTGAGCAAATTTGTCCAG+AGG + chr5_4:52249284-52249303 None:intergenic 50.0%
! AGCTCTAACAGCTGAGACTG+AGG + chr5_4:52249362-52249381 None:intergenic 50.0%
TCAGCTGTTAGAGCTGTCAG+TGG - chr5_4:52249367-52249386 Msa0857080:three_prime_UTR 50.0%
GCAAGGACCGACTAATCTAG+CGG - chr5_4:52249682-52249701 Msa0857080:intron 50.0%
! GGTTGGTCCGCTAGATTAGT+CGG + chr5_4:52249692-52249711 None:intergenic 50.0%
! TAATCTAGCGGACCAACCCA+TGG - chr5_4:52249694-52249713 Msa0857080:intron 50.0%
CACATGTGTCAGTAGCGTGT+TGG + chr5_4:52249890-52249909 None:intergenic 50.0%
ACTGACAAAGACAGGTGGAG+AGG - chr5_4:52250165-52250184 Msa0857080:intron 50.0%
CAAAGACAGGTGGAGAGGTT+TGG - chr5_4:52250170-52250189 Msa0857080:intron 50.0%
CATCACAAGAGGGAAGGGTT+TGG - chr5_4:52250221-52250240 Msa0857080:intron 50.0%
TTCCAAGCACCACAAGATGC+TGG - chr5_4:52250255-52250274 Msa0857080:intron 50.0%
TTCCAGCATCTTGTGGTGCT+TGG + chr5_4:52250260-52250279 None:intergenic 50.0%
!! AACCAAACCAGGCACCGAAT+CGG - chr5_4:52250618-52250637 Msa0857080:intron 50.0%
! ACCTAGTGGTCTTGCCGATT+CGG + chr5_4:52250635-52250654 None:intergenic 50.0%
TCGGTTGAACCATGACCTAG+TGG + chr5_4:52250649-52250668 None:intergenic 50.0%
GTGGTGGTCACCATGTATGA+TGG - chr5_4:52250792-52250811 Msa0857080:CDS 50.0%
CTTGGTATCTGGGGAGGTAA+AGG - chr5_4:52251210-52251229 Msa0857080:CDS 50.0%
ATCTGGGGAGGTAAAGGTCA+AGG - chr5_4:52251216-52251235 Msa0857080:CDS 50.0%
GCTATGTGTCAGCTTGTGTC+TGG + chr5_4:52251612-52251631 None:intergenic 50.0%
CAATCCGGATCCGACATATG+AGG + chr5_4:52251676-52251695 None:intergenic 50.0%
GTGTGACTGCACACGCATAT+CGG + chr5_4:52251831-52251850 None:intergenic 50.0%
AGCACTCATCATGATAGGGC+TGG + chr5_4:52251984-52252003 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG - chr5_4:52251983-52252002 Msa0857080:intron 50.0%
! AGTGCTGGAGAGCTAGAAAG+TGG - chr5_4:52251998-52252017 Msa0857080:intron 50.0%
AACGATCTTGATGCAGGAGC+CGG - chr5_4:52252112-52252131 Msa0857080:intron 50.0%
TGTTGTTCCACCCATACGAC+CGG + chr5_4:52252134-52252153 None:intergenic 50.0%
TATTTGGAAGGGGCTGCTCT+TGG - chr5_4:52252843-52252862 Msa0857080:intron 50.0%
TCCGTACAACCTTCAGGAAC+AGG + chr5_4:52253991-52254010 None:intergenic 50.0%
GGGTGAGCAAATTTGTCCAG+AGG + chr5_4:52249284-52249303 None:intergenic 50.0%
! AGCTCTAACAGCTGAGACTG+AGG + chr5_4:52249362-52249381 None:intergenic 50.0%
TCAGCTGTTAGAGCTGTCAG+TGG - chr5_4:52249367-52249386 Msa0857080:three_prime_UTR 50.0%
GCAAGGACCGACTAATCTAG+CGG - chr5_4:52249682-52249701 Msa0857080:intron 50.0%
! GGTTGGTCCGCTAGATTAGT+CGG + chr5_4:52249692-52249711 None:intergenic 50.0%
! TAATCTAGCGGACCAACCCA+TGG - chr5_4:52249694-52249713 Msa0857080:intron 50.0%
CACATGTGTCAGTAGCGTGT+TGG + chr5_4:52249890-52249909 None:intergenic 50.0%
ACTGACAAAGACAGGTGGAG+AGG - chr5_4:52250165-52250184 Msa0857080:intron 50.0%
CAAAGACAGGTGGAGAGGTT+TGG - chr5_4:52250170-52250189 Msa0857080:intron 50.0%
CATCACAAGAGGGAAGGGTT+TGG - chr5_4:52250221-52250240 Msa0857080:intron 50.0%
TTCCAAGCACCACAAGATGC+TGG - chr5_4:52250255-52250274 Msa0857080:intron 50.0%
TTCCAGCATCTTGTGGTGCT+TGG + chr5_4:52250260-52250279 None:intergenic 50.0%
!! AACCAAACCAGGCACCGAAT+CGG - chr5_4:52250618-52250637 Msa0857080:intron 50.0%
! ACCTAGTGGTCTTGCCGATT+CGG + chr5_4:52250635-52250654 None:intergenic 50.0%
TCGGTTGAACCATGACCTAG+TGG + chr5_4:52250649-52250668 None:intergenic 50.0%
GTGGTGGTCACCATGTATGA+TGG - chr5_4:52250792-52250811 Msa0857080:CDS 50.0%
CTTGGTATCTGGGGAGGTAA+AGG - chr5_4:52251210-52251229 Msa0857080:CDS 50.0%
ATCTGGGGAGGTAAAGGTCA+AGG - chr5_4:52251216-52251235 Msa0857080:CDS 50.0%
GCTATGTGTCAGCTTGTGTC+TGG + chr5_4:52251612-52251631 None:intergenic 50.0%
CAATCCGGATCCGACATATG+AGG + chr5_4:52251676-52251695 None:intergenic 50.0%
GTGTGACTGCACACGCATAT+CGG + chr5_4:52251831-52251850 None:intergenic 50.0%
AGCACTCATCATGATAGGGC+TGG + chr5_4:52251984-52252003 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG - chr5_4:52251983-52252002 Msa0857080:intron 50.0%
! AGTGCTGGAGAGCTAGAAAG+TGG - chr5_4:52251998-52252017 Msa0857080:intron 50.0%
AACGATCTTGATGCAGGAGC+CGG - chr5_4:52252112-52252131 Msa0857080:intron 50.0%
TGTTGTTCCACCCATACGAC+CGG + chr5_4:52252134-52252153 None:intergenic 50.0%
TATTTGGAAGGGGCTGCTCT+TGG - chr5_4:52252843-52252862 Msa0857080:intron 50.0%
TCCGTACAACCTTCAGGAAC+AGG + chr5_4:52253991-52254010 None:intergenic 50.0%
AGCTGAGACTGAGGCAACCA+TGG + chr5_4:52249353-52249372 None:intergenic 55.0%
AGCCACACCTCCTCGAATTG+TGG - chr5_4:52250510-52250529 Msa0857080:intron 55.0%
TGCCACAATTCGAGGAGGTG+TGG + chr5_4:52250515-52250534 None:intergenic 55.0%
ACCGAATCGGCAAGACCACT+AGG - chr5_4:52250631-52250650 Msa0857080:intron 55.0%
TCGGCAAGACCACTAGGTCA+TGG - chr5_4:52250637-52250656 Msa0857080:intron 55.0%
AGCTGAGACTGAGGCAACCA+TGG + chr5_4:52249353-52249372 None:intergenic 55.0%
AGCCACACCTCCTCGAATTG+TGG - chr5_4:52250510-52250529 Msa0857080:intron 55.0%
TGCCACAATTCGAGGAGGTG+TGG + chr5_4:52250515-52250534 None:intergenic 55.0%
ACCGAATCGGCAAGACCACT+AGG - chr5_4:52250631-52250650 Msa0857080:intron 55.0%
TCGGCAAGACCACTAGGTCA+TGG - chr5_4:52250637-52250656 Msa0857080:intron 55.0%
!! TGCCGATTCGGTGCCTGGTT+TGG + chr5_4:52250623-52250642 None:intergenic 60.0%
TGATGCAGGAGCCGGTCGTA+TGG - chr5_4:52252120-52252139 Msa0857080:intron 60.0%
GATGCAGGAGCCGGTCGTAT+GGG - chr5_4:52252121-52252140 Msa0857080:intron 60.0%
!! TGCCGATTCGGTGCCTGGTT+TGG + chr5_4:52250623-52250642 None:intergenic 60.0%
TGATGCAGGAGCCGGTCGTA+TGG - chr5_4:52252120-52252139 Msa0857080:intron 60.0%
GATGCAGGAGCCGGTCGTAT+GGG - chr5_4:52252121-52252140 Msa0857080:intron 60.0%
!! GGTCTTGCCGATTCGGTGCC+TGG + chr5_4:52250628-52250647 None:intergenic 65.0%
!! GGTCTTGCCGATTCGGTGCC+TGG + chr5_4:52250628-52250647 None:intergenic 65.0%
GCAGGAGCCGGTCGTATGGG+TGG - chr5_4:52252124-52252143 Msa0857080:intron 70.0%
GCAGGAGCCGGTCGTATGGG+TGG - chr5_4:52252124-52252143 Msa0857080:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 52249239 52254348 52249239 ID=Msa0857080;Name=Msa0857080
chr5_4 mRNA 52249239 52254348 52249239 ID=Msa0857080-mRNA-1;Parent=Msa0857080;Name=Msa0857080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=113|0.83|0.85|1|1|1|7|268|483
chr5_4 exon 52249239 52249625 52249239 ID=Msa0857080-mRNA-1:exon:16340;Parent=Msa0857080-mRNA-1
chr5_4 exon 52250681 52250962 52250681 ID=Msa0857080-mRNA-1:exon:16339;Parent=Msa0857080-mRNA-1
chr5_4 exon 52251130 52251602 52251130 ID=Msa0857080-mRNA-1:exon:16338;Parent=Msa0857080-mRNA-1
chr5_4 exon 52252304 52252389 52252304 ID=Msa0857080-mRNA-1:exon:16337;Parent=Msa0857080-mRNA-1
chr5_4 exon 52252659 52252764 52252659 ID=Msa0857080-mRNA-1:exon:16336;Parent=Msa0857080-mRNA-1
chr5_4 exon 52253256 52253596 52253256 ID=Msa0857080-mRNA-1:exon:16335;Parent=Msa0857080-mRNA-1
chr5_4 exon 52254191 52254348 52254191 ID=Msa0857080-mRNA-1:exon:16334;Parent=Msa0857080-mRNA-1
chr5_4 five_prime_UTR 52254236 52254348 52254236 ID=Msa0857080-mRNA-1:five_prime_utr;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52254191 52254235 52254191 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52253256 52253596 52253256 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52252659 52252764 52252659 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52252304 52252389 52252304 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52251130 52251602 52251130 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52250681 52250962 52250681 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 CDS 52249507 52249625 52249507 ID=Msa0857080-mRNA-1:cds;Parent=Msa0857080-mRNA-1
chr5_4 three_prime_UTR 52249239 52249506 52249239 ID=Msa0857080-mRNA-1:three_prime_utr;Parent=Msa0857080-mRNA-1
Gene Sequence

>Msa0857080

ATGGTTGCCTCAGTCTCAGCTGTTAGAGCTGTCAGTGGAACACCAGATAATACTGTGATATTGCAGTTGAGCTTGAATAGCTCTGGAGCAGTAGCTTCAGTTCCAAGTTCATCATTCTTTGGAAGCAGCTTAAAGAAAGTTACCTCGAGGTTTCCAAACACAAAGGTTTCATCTGGAAGTATGAAAATTGTTGCTGCTGAGATTGATGAAAGCAAGCAAACTGACAAAGACAGGTGGAGAGGTTTGGCCTATGATATTTCAGATGATCAACAAGACATCACAAGAGGGAAGGGTTTGGTTGATACAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAGACAGTACAACCTTGACAACACCATGGATGGTTTTTACATTGCACCTGCTTTTATGGACAAGCTTGTTGTACACATCACCAAGAACTTCTTGACTCTGCCTAATATCAAGGTTCCTCTAATTCTTGGTATCTGGGGAGGTAAAGGTCAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAACCAGCGAAACTAATTCGACAAAGATATAGAGAAGCAGCAGACATAATACGAAAAGGAAAAATGTGTTGTCTCTTCATAAACGATCTTGATGCAGGAGCCGGTCGTATGGGTGGAACAACACAATACACTGTGAACAACCAAATGGTAAATGCAACACTTATGAACATTGCTGATAACCCAACAAATGTTCAACTTCCTGGTATGTATAACAAAGAAGAGAATGCACGTGTGCCTATCATTGTTACTGGTAATGATTTTTCAACATTGTATGCTCCTCTTATTCGTGACGGTCGTATGGAGAAATTCTATTGGGCACCTACAAGAGAAGATCGTATTGGTGTTTGTAAAGGGATTTTTAGACATGATAATGTGCCTGAGGAAGATGTTGTTAAGATTGTTGACACTTTCCCTGGACAATCCATTGATTTCTTTGGTGCACTTAGGGCAAGAGTATATGATGATGAAGTGAGAAAGTGGATTGCTGGTGTTGGTATTGAAACCATTGGGAAAAAGCTTGTGAACTCAAAAGAAGGACCTCCAACTTTTGATCAACCCAAGATGACTTTGGAGAAACTGTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGAAAATGTGAAGAGAGTTCAATTGGCAGACAAGTATTTGGAAGGGGCTGCTCTTGGTGATGCTAATCAAGATGCTATCAAGAGTGGATCTTACTATGGTAAGGCAGCTCAACAAGTAAGTATTCCTGTTCCTGAAGGTTGTACGGATCCAAATGCCAAAAACTTCGACCCAACTGCTAGAAGTGATGATGGAACATGCTTATACACATTTGAATAA

Protein sequence

>Msa0857080

MVASVSAVRAVSGTPDNTVILQLSLNSSGAVASVPSSSFFGSSLKKVTSRFPNTKVSSGSMKIVAAEIDESKQTDKDRWRGLAYDISDDQQDITRGKGLVDTVFQAPQDAGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSYYGKAAQQVSIPVPEGCTDPNAKNFDPTARSDDGTCLYTFE*