Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796410 | XP_003611323.2 | 95.431 | 591 | 27 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796410 | G7JXC4 | 95.431 | 591 | 27 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603680 | Msa0796410 | 0.818717 | 1.694750e-52 | -8.615850e-47 |
| Msa0700910 | Msa0796410 | 0.821458 | 3.995324e-53 | -8.615850e-47 |
| Msa0796410 | Msa0834280 | 0.893538 | 5.725707e-75 | -8.615850e-47 |
| Msa0796410 | Msa0985430 | 0.817209 | 3.714015e-52 | -8.615850e-47 |
| Msa0796410 | Msa1024120 | 0.819121 | 1.371499e-52 | -8.615850e-47 |
| Msa0796410 | Msa1107950 | 0.816013 | 6.882021e-52 | -8.615850e-47 |
| Msa0796410 | Msa1132570 | 0.851505 | 8.497998e-61 | -8.615850e-47 |
| Msa0796410 | Msa1216900 | 0.811094 | 8.312997e-51 | -8.615850e-47 |
| Msa0796410 | Msa1232860 | 0.807091 | 5.986203e-50 | -8.615850e-47 |
| Msa0796410 | Msa1391600 | 0.816049 | 6.757515e-52 | -8.615850e-47 |
| Msa0796410 | Msa1435050 | 0.803121 | 4.055176e-49 | -8.615850e-47 |
| Msa0139710 | Msa0796410 | 0.873177 | 1.799249e-67 | -8.615850e-47 |
| Msa0219660 | Msa0796410 | 0.848186 | 7.193717e-60 | -8.615850e-47 |
| Msa0429130 | Msa0796410 | 0.810519 | 1.107025e-50 | -8.615850e-47 |
| Msa0458790 | Msa0796410 | 0.800346 | 1.504535e-48 | -8.615850e-47 |
| Msa0260970 | Msa0796410 | 0.816225 | 6.170021e-52 | -8.615850e-47 |
| Msa0288270 | Msa0796410 | 0.812761 | 3.603780e-51 | -8.615850e-47 |
| Msa0290950 | Msa0796410 | 0.832966 | 6.991012e-56 | -8.615850e-47 |
| Msa0290970 | Msa0796410 | 0.828166 | 1.045340e-54 | -8.615850e-47 |
| Msa0548720 | Msa0796410 | 0.815194 | 1.047559e-51 | -8.615850e-47 |
| Msa0575250 | Msa0796410 | 0.802180 | 6.340348e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796410 | MtrunA17_Chr5g0399331 | 95.907 | 562 | 23 | 0 | 30 | 591 | 22 | 583 | 0.0 | 1090 |
| Msa0796410 | MtrunA17_Chr5g0403231 | 29.375 | 640 | 351 | 16 | 19 | 588 | 15 | 623 | 7.04e-78 | 258 |
| Msa0796410 | MtrunA17_Chr8g0373901 | 29.965 | 574 | 325 | 12 | 83 | 588 | 61 | 625 | 7.56e-74 | 248 |
| Msa0796410 | MtrunA17_Chr4g0034351 | 32.448 | 339 | 196 | 5 | 271 | 587 | 289 | 616 | 2.81e-52 | 189 |
| Msa0796410 | MtrunA17_Chr3g0133631 | 25.560 | 536 | 350 | 14 | 79 | 584 | 53 | 569 | 1.87e-43 | 163 |
| Msa0796410 | MtrunA17_Chr8g0374741 | 26.699 | 412 | 273 | 9 | 183 | 583 | 202 | 595 | 3.68e-42 | 160 |
| Msa0796410 | MtrunA17_Chr1g0153951 | 25.273 | 550 | 349 | 14 | 79 | 583 | 13 | 545 | 4.58e-39 | 150 |
| Msa0796410 | MtrunA17_Chr5g0402501 | 29.747 | 316 | 195 | 7 | 273 | 582 | 249 | 543 | 1.09e-37 | 147 |
| Msa0796410 | MtrunA17_Chr5g0435281 | 27.536 | 345 | 203 | 7 | 273 | 583 | 178 | 509 | 1.85e-37 | 145 |
| Msa0796410 | MtrunA17_Chr4g0028651 | 32.189 | 233 | 147 | 4 | 356 | 584 | 469 | 694 | 7.58e-35 | 140 |
| Msa0796410 | MtrunA17_Chr8g0351061 | 24.632 | 272 | 185 | 7 | 309 | 572 | 360 | 619 | 2.29e-19 | 92.0 |
| Msa0796410 | MtrunA17_Chr3g0115381 | 31.176 | 170 | 102 | 3 | 345 | 512 | 535 | 691 | 1.06e-16 | 84.0 |
| Msa0796410 | MtrunA17_Chr1g0163291 | 26.482 | 253 | 152 | 10 | 309 | 547 | 338 | 570 | 1.79e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796410 | AT5G47380.1 | 56.747 | 578 | 229 | 11 | 23 | 590 | 27 | 593 | 0.0 | 621 |
| Msa0796410 | AT5G47380.4 | 56.747 | 578 | 229 | 11 | 23 | 590 | 27 | 593 | 0.0 | 619 |
| Msa0796410 | AT5G47380.5 | 58.532 | 545 | 206 | 10 | 56 | 590 | 3 | 537 | 0.0 | 612 |
| Msa0796410 | AT5G47380.2 | 54.832 | 476 | 195 | 10 | 23 | 489 | 27 | 491 | 1.40e-162 | 474 |
| Msa0796410 | AT5G47380.3 | 55.297 | 472 | 191 | 10 | 23 | 485 | 27 | 487 | 2.33e-162 | 473 |
| Msa0796410 | AT5G66600.7 | 30.674 | 564 | 311 | 17 | 83 | 586 | 14 | 557 | 2.87e-68 | 231 |
| Msa0796410 | AT5G66600.2 | 30.851 | 564 | 310 | 18 | 83 | 586 | 48 | 591 | 6.19e-68 | 231 |
| Msa0796410 | AT5G66600.14 | 30.851 | 564 | 310 | 18 | 83 | 586 | 68 | 611 | 6.84e-68 | 232 |
| Msa0796410 | AT5G66600.1 | 30.851 | 564 | 310 | 18 | 83 | 586 | 68 | 611 | 6.84e-68 | 232 |
| Msa0796410 | AT5G66600.4 | 30.851 | 564 | 310 | 18 | 83 | 586 | 68 | 611 | 6.84e-68 | 232 |
| Msa0796410 | AT5G66600.9 | 30.851 | 564 | 310 | 18 | 83 | 586 | 68 | 611 | 6.84e-68 | 232 |
| Msa0796410 | AT5G66600.3 | 30.851 | 564 | 310 | 18 | 83 | 586 | 68 | 611 | 6.84e-68 | 232 |
| Msa0796410 | AT2G23700.1 | 33.333 | 339 | 201 | 8 | 265 | 588 | 378 | 706 | 1.41e-52 | 192 |
| Msa0796410 | AT1G16750.1 | 27.289 | 557 | 288 | 13 | 79 | 583 | 36 | 527 | 5.20e-50 | 181 |
| Msa0796410 | AT3G13000.1 | 37.354 | 257 | 152 | 5 | 332 | 586 | 299 | 548 | 1.38e-48 | 178 |
| Msa0796410 | AT3G13000.3 | 37.354 | 257 | 152 | 5 | 332 | 586 | 328 | 577 | 2.05e-48 | 178 |
| Msa0796410 | AT3G13000.2 | 37.354 | 257 | 152 | 5 | 332 | 586 | 328 | 577 | 2.05e-48 | 178 |
| Msa0796410 | AT5G66600.12 | 30.952 | 462 | 246 | 15 | 83 | 486 | 68 | 514 | 3.92e-47 | 173 |
| Msa0796410 | AT5G66600.11 | 30.952 | 462 | 246 | 15 | 83 | 486 | 68 | 514 | 3.92e-47 | 173 |
| Msa0796410 | AT5G66600.6 | 30.952 | 462 | 246 | 15 | 83 | 486 | 68 | 514 | 3.92e-47 | 173 |
| Msa0796410 | AT5G66600.13 | 30.952 | 462 | 246 | 15 | 83 | 486 | 68 | 514 | 3.92e-47 | 173 |
| Msa0796410 | AT3G18900.6 | 29.968 | 317 | 206 | 4 | 267 | 583 | 149 | 449 | 6.05e-46 | 168 |
| Msa0796410 | AT3G18900.3 | 29.968 | 317 | 206 | 4 | 267 | 583 | 149 | 449 | 6.05e-46 | 168 |
| Msa0796410 | AT1G21060.2 | 29.025 | 472 | 270 | 12 | 132 | 583 | 65 | 491 | 1.12e-45 | 169 |
| Msa0796410 | AT3G18900.4 | 29.968 | 317 | 206 | 4 | 267 | 583 | 230 | 530 | 1.70e-45 | 169 |
| Msa0796410 | AT3G18900.5 | 29.968 | 317 | 206 | 4 | 267 | 583 | 225 | 525 | 1.72e-45 | 169 |
| Msa0796410 | AT1G21060.1 | 29.025 | 472 | 270 | 12 | 132 | 583 | 77 | 503 | 2.11e-45 | 168 |
| Msa0796410 | AT5G42690.2 | 26.607 | 560 | 330 | 16 | 66 | 584 | 20 | 539 | 2.75e-42 | 160 |
| Msa0796410 | AT5G42690.4 | 26.607 | 560 | 330 | 16 | 66 | 584 | 20 | 539 | 2.75e-42 | 160 |
| Msa0796410 | AT5G42690.5 | 26.433 | 541 | 328 | 15 | 74 | 584 | 12 | 512 | 4.25e-42 | 159 |
| Msa0796410 | AT5G42690.1 | 26.786 | 560 | 328 | 17 | 66 | 584 | 20 | 538 | 4.84e-42 | 159 |
| Msa0796410 | AT1G76620.1 | 26.749 | 486 | 283 | 15 | 132 | 588 | 80 | 521 | 6.38e-42 | 159 |
| Msa0796410 | AT4G37080.2 | 29.206 | 315 | 191 | 5 | 274 | 583 | 321 | 608 | 2.56e-40 | 155 |
| Msa0796410 | AT4G37080.3 | 29.206 | 315 | 191 | 5 | 274 | 583 | 321 | 608 | 2.56e-40 | 155 |
| Msa0796410 | AT4G37080.1 | 29.206 | 315 | 191 | 5 | 274 | 583 | 308 | 595 | 3.97e-40 | 155 |
| Msa0796410 | AT2G39690.5 | 25.000 | 544 | 331 | 14 | 83 | 584 | 16 | 524 | 6.59e-40 | 153 |
| Msa0796410 | AT5G42690.3 | 26.679 | 521 | 313 | 14 | 93 | 584 | 7 | 487 | 6.86e-40 | 152 |
| Msa0796410 | AT2G39690.1 | 25.000 | 544 | 330 | 14 | 83 | 584 | 16 | 523 | 2.28e-39 | 151 |
| Msa0796410 | AT1G43020.1 | 34.177 | 237 | 147 | 3 | 352 | 588 | 212 | 439 | 3.05e-39 | 149 |
| Msa0796410 | AT2G39690.2 | 28.779 | 344 | 213 | 7 | 262 | 584 | 85 | 417 | 4.17e-39 | 149 |
| Msa0796410 | AT5G66600.15 | 30.170 | 411 | 225 | 12 | 83 | 438 | 14 | 417 | 9.35e-39 | 148 |
| Msa0796410 | AT5G66600.10 | 30.170 | 411 | 225 | 12 | 83 | 438 | 68 | 471 | 1.51e-38 | 149 |
| Msa0796410 | AT5G66600.8 | 30.170 | 411 | 225 | 12 | 83 | 438 | 68 | 471 | 1.51e-38 | 149 |
| Msa0796410 | AT5G66600.5 | 30.170 | 411 | 225 | 12 | 83 | 438 | 68 | 471 | 1.51e-38 | 149 |
| Msa0796410 | AT2G39690.4 | 28.779 | 344 | 213 | 7 | 262 | 584 | 166 | 498 | 2.83e-38 | 148 |
| Msa0796410 | AT2G39690.8 | 29.129 | 333 | 203 | 7 | 273 | 584 | 177 | 497 | 8.54e-38 | 146 |
| Msa0796410 | AT3G12540.2 | 25.876 | 371 | 220 | 12 | 241 | 584 | 162 | 504 | 1.89e-30 | 125 |
| Msa0796410 | AT3G12540.1 | 25.876 | 371 | 220 | 12 | 241 | 584 | 229 | 571 | 3.22e-30 | 125 |
| Msa0796410 | AT3G18900.1 | 32.110 | 218 | 135 | 4 | 267 | 484 | 230 | 434 | 5.65e-29 | 120 |
| Msa0796410 | AT1G16750.2 | 26.566 | 399 | 196 | 9 | 79 | 434 | 36 | 380 | 2.17e-27 | 115 |
| Msa0796410 | AT5G60720.1 | 27.123 | 365 | 199 | 13 | 273 | 584 | 340 | 690 | 4.38e-27 | 116 |
| Msa0796410 | AT1G76620.2 | 26.562 | 384 | 213 | 14 | 132 | 486 | 80 | 423 | 1.74e-23 | 103 |
| Msa0796410 | AT3G18900.2 | 33.333 | 171 | 105 | 3 | 267 | 437 | 230 | 391 | 2.05e-22 | 100 |
| Msa0796410 | AT1G43020.3 | 39.161 | 143 | 81 | 3 | 352 | 494 | 212 | 348 | 2.55e-22 | 99.4 |
| Msa0796410 | AT2G39690.6 | 24.434 | 442 | 259 | 13 | 83 | 484 | 16 | 422 | 5.04e-22 | 99.4 |
| Msa0796410 | AT2G39690.7 | 24.434 | 442 | 258 | 13 | 83 | 484 | 16 | 421 | 1.81e-21 | 97.8 |
| Msa0796410 | AT4G37080.4 | 28.440 | 218 | 124 | 5 | 274 | 486 | 321 | 511 | 5.41e-18 | 87.8 |
| Msa0796410 | AT3G11920.1 | 27.626 | 257 | 146 | 10 | 309 | 547 | 365 | 599 | 1.51e-17 | 86.7 |
| Msa0796410 | AT2G39690.3 | 30.939 | 181 | 104 | 5 | 273 | 434 | 177 | 355 | 3.56e-16 | 80.9 |
| Msa0796410 | AT4G08550.1 | 22.822 | 241 | 151 | 5 | 345 | 572 | 415 | 633 | 1.87e-14 | 77.0 |
| Msa0796410 | AT4G08550.2 | 22.822 | 241 | 151 | 5 | 345 | 572 | 469 | 687 | 2.60e-14 | 76.6 |
Find 135 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAATCTTTCCACCAATTT+AGG | 0.083497 | 5_3:+8464754 | None:intergenic |
| ACAACTCATCAACTCAAATT+TGG | 0.154234 | 5_3:-8465174 | Msa0796410:CDS |
| TTTATTCATACATGTTAATT+AGG | 0.216708 | 5_3:+8464367 | None:intergenic |
| TTCACTTTCTTCCTCTCTTC+AGG | 0.258470 | 5_3:-8469918 | Msa0796410:five_prime_UTR |
| CACTTTCAGCAAGGGCTTCT+AGG | 0.260634 | 5_3:-8469109 | Msa0796410:CDS |
| GTTTATGTTAACGTTATCTA+AGG | 0.264155 | 5_3:+8464434 | None:intergenic |
| AAAATCTTTCCACCAATTTA+GGG | 0.275012 | 5_3:+8464755 | None:intergenic |
| AAGAAATGTATGAATGTAAA+TGG | 0.276295 | 5_3:+8469880 | None:intergenic |
| TAAAGTCATTCTCCCTAAAT+TGG | 0.293856 | 5_3:-8464767 | Msa0796410:CDS |
| GAAAGGCCATGATGAATTTC+CGG | 0.303535 | 5_3:-8469429 | Msa0796410:intron |
| ACAAAATATCGCTTGCTCTA+TGG | 0.305387 | 5_3:+8465829 | None:intergenic |
| TATTGTCCCTGGAGCATAAC+TGG | 0.307570 | 5_3:-8464535 | Msa0796410:three_prime_UTR |
| GATTTGAAGAATAGAATCTT+TGG | 0.308526 | 5_3:-8467556 | Msa0796410:CDS |
| CAGCCTCCTTAGAGAGCTTT+GGG | 0.308831 | 5_3:+8466325 | None:intergenic |
| GGCCTTACAGTTCAAAATTC+AGG | 0.310105 | 5_3:-8464597 | Msa0796410:CDS |
| AAACATATATCAAAATATTA+AGG | 0.324112 | 5_3:+8464397 | None:intergenic |
| TGCTTGGGCACTGGTGTAGA+TGG | 0.356648 | 5_3:+8467231 | None:intergenic |
| TCCAACCTTGGTGGTGGAAT+CGG | 0.364526 | 5_3:+8467474 | None:intergenic |
| CCAGCCTCCTTAGAGAGCTT+TGG | 0.378177 | 5_3:+8466324 | None:intergenic |
| CAACTCATCAACTCAAATTT+GGG | 0.385152 | 5_3:-8465173 | Msa0796410:CDS |
| CCTTTGCACCGGAGCATTGT+CGG | 0.387970 | 5_3:-8465117 | Msa0796410:CDS |
| ACACAGACACTTTGCTTCTC+AGG | 0.399323 | 5_3:-8468265 | Msa0796410:intron |
| GAATTCCCCAAAGCTCTCTA+AGG | 0.401712 | 5_3:-8466331 | Msa0796410:CDS |
| GTCTGCTTTGCCCTTTGCAC+CGG | 0.407525 | 5_3:-8465128 | Msa0796410:CDS |
| ATCTCCTCAGAAAGCCTGCT+TGG | 0.408102 | 5_3:+8467215 | None:intergenic |
| TTCAAATCATAGAGCATCCT+TGG | 0.410098 | 5_3:-8469036 | Msa0796410:CDS |
| CGGAGCATTGTCGGATCCTA+TGG | 0.417025 | 5_3:-8465108 | Msa0796410:intron |
| GTATGGCAACTATGTATTGC+TGG | 0.425160 | 5_3:-8467184 | Msa0796410:CDS |
| TGATATCCTTGGATGGATAA+TGG | 0.425516 | 5_3:-8464707 | Msa0796410:CDS |
| ATTTGAAGAATAGAATCTTT+GGG | 0.427166 | 5_3:-8467555 | Msa0796410:CDS |
| CCAACCTTGGTGGTGGAATC+GGG | 0.435103 | 5_3:+8467475 | None:intergenic |
| TTCATCATGGCCTTTCCCTA+TGG | 0.436112 | 5_3:+8469436 | None:intergenic |
| AATCTGCAGTGGAAATATCT+TGG | 0.440218 | 5_3:-8467043 | Msa0796410:CDS |
| TCCGAACACCTCGCCTTGGA+CGG | 0.446044 | 5_3:-8465805 | Msa0796410:CDS |
| CTCGACACAAACGATCTAAC+AGG | 0.446669 | 5_3:-8469751 | Msa0796410:intron |
| CAGAAAGCCTGCTTGGGCAC+TGG | 0.447555 | 5_3:+8467222 | None:intergenic |
| GTGGAGGACCTTGACAATAT+CGG | 0.456089 | 5_3:+8467119 | None:intergenic |
| CCCGTCCAAGGCGAGGTGTT+CGG | 0.458315 | 5_3:+8465804 | None:intergenic |
| ATCTTGCTCGAGAGAGCAAT+GGG | 0.467654 | 5_3:-8468315 | Msa0796410:CDS |
| TCTCCTCAGAAAGCCTGCTT+GGG | 0.468909 | 5_3:+8467216 | None:intergenic |
| AAAGCGCTTGAAATTATGCT+TGG | 0.470906 | 5_3:+8467634 | None:intergenic |
| AATTGAGTTGCTTGAAGAAG+AGG | 0.472868 | 5_3:-8467788 | Msa0796410:CDS |
| TTCTCATGCTTCTTACGCCA+TGG | 0.474043 | 5_3:-8466997 | Msa0796410:CDS |
| AAGGGTGAATGTCAGTCAAA+TGG | 0.474180 | 5_3:-8466514 | Msa0796410:CDS |
| TAGATCGTTTGTGTCGAGTT+TGG | 0.477859 | 5_3:+8469756 | None:intergenic |
| ATCAGCATTGATGATATCCT+TGG | 0.479859 | 5_3:-8464718 | Msa0796410:CDS |
| AATACTGTGTCGAGGCTGTA+TGG | 0.480500 | 5_3:+8467091 | None:intergenic |
| CGACAATGCTCCGGTGCAAA+GGG | 0.482820 | 5_3:+8465118 | None:intergenic |
| TGACAGGCATATTTAGCATA+TGG | 0.485474 | 5_3:-8466353 | Msa0796410:intron |
| AGCTATGATCTTATTGTCCC+TGG | 0.485678 | 5_3:-8464546 | Msa0796410:exon |
| AACTTTGTTCAGAAGGTGGC+CGG | 0.487946 | 5_3:+8467704 | None:intergenic |
| CTCATTCAAAACAAGAATCA+AGG | 0.492592 | 5_3:-8467663 | Msa0796410:CDS |
| CATTCTTGTTTATACAATTG+TGG | 0.495606 | 5_3:+8469063 | None:intergenic |
| TAAGAGCTTGCAGAGGTCGC+AGG | 0.500429 | 5_3:+8467590 | None:intergenic |
| AGCATGTTCTTGCTATGTAC+AGG | 0.501029 | 5_3:-8467750 | Msa0796410:CDS |
| TGTCTGTAGAAACTCTCTCT+TGG | 0.502312 | 5_3:+8464813 | None:intergenic |
| CCTGGAGCATAACTGGTTTG+AGG | 0.503301 | 5_3:-8464528 | Msa0796410:three_prime_UTR |
| CCTCAAACCAGTTATGCTCC+AGG | 0.505467 | 5_3:+8464528 | None:intergenic |
| CTTACGCCATGGACAACTAC+AGG | 0.505664 | 5_3:-8466986 | Msa0796410:intron |
| CTAGAAGCCCTTGCTGAAAG+TGG | 0.511951 | 5_3:+8469110 | None:intergenic |
| TTCTAGTCGAACAGCTCGAA+AGG | 0.512430 | 5_3:-8466533 | Msa0796410:CDS |
| CCGACAATGCTCCGGTGCAA+AGG | 0.512555 | 5_3:+8465117 | None:intergenic |
| GGCAAAGCAGACAAGTGGTT+GGG | 0.513513 | 5_3:+8465139 | None:intergenic |
| CCGAACACCTCGCCTTGGAC+GGG | 0.515400 | 5_3:-8465804 | Msa0796410:intron |
| AGGCTGTATGGCATTGGTGG+AGG | 0.516474 | 5_3:+8467103 | None:intergenic |
| ATTGTAGCTAAAAGTTTACT+CGG | 0.519041 | 5_3:-8464866 | Msa0796410:intron |
| CCAAAGCTCTCTAAGGAGGC+TGG | 0.520350 | 5_3:-8466324 | Msa0796410:CDS |
| TGTTTCCGAACACCTCGCCT+TGG | 0.521123 | 5_3:-8465809 | Msa0796410:CDS |
| GTGTTGTGTCTGCTGCCCTT+AGG | 0.521903 | 5_3:-8465217 | Msa0796410:CDS |
| ATAACTGGTTTGAGGAAGCT+AGG | 0.522544 | 5_3:-8464520 | Msa0796410:three_prime_UTR |
| AAGCGCTTGAAATTATGCTT+GGG | 0.524292 | 5_3:+8467635 | None:intergenic |
| AGTCATTCTCCCTAAATTGG+TGG | 0.528274 | 5_3:-8464764 | Msa0796410:CDS |
| TAGCAAGAACATGCTGTTCG+CGG | 0.529545 | 5_3:+8467758 | None:intergenic |
| CATCTTGCTCGAGAGAGCAA+TGG | 0.530222 | 5_3:-8468316 | Msa0796410:CDS |
| AATATATCCAACCTTGGTGG+TGG | 0.539919 | 5_3:+8467468 | None:intergenic |
| ATTCTACTTTAACTTTGAAG+CGG | 0.544363 | 5_3:-8464345 | None:intergenic |
| AATGATGCAGAAGGAAGTGC+TGG | 0.544961 | 5_3:-8469809 | Msa0796410:CDS |
| CATAGGATCCGACAATGCTC+CGG | 0.547311 | 5_3:+8465109 | None:intergenic |
| AAGAGCTTGCAGAGGTCGCA+GGG | 0.547732 | 5_3:+8467591 | None:intergenic |
| TCGAAATTCTCAAGAGGCGG+TGG | 0.548479 | 5_3:-8469470 | Msa0796410:CDS |
| TGAGGAGATGGTGAAGTGTA+TGG | 0.551680 | 5_3:-8467201 | Msa0796410:CDS |
| AGTCATGCTCCTTTATCAAG+TGG | 0.553004 | 5_3:-8467529 | Msa0796410:CDS |
| AAGCAGGCTTTCTGAGGAGA+TGG | 0.553899 | 5_3:-8467213 | Msa0796410:CDS |
| ACACTAGAACTTTGTTCAGA+AGG | 0.560400 | 5_3:+8467697 | None:intergenic |
| TTCGAATCTAAGAGAAGAGC+TGG | 0.561093 | 5_3:-8464842 | Msa0796410:CDS |
| AAGAGTGTGGGCCTGAAGAG+AGG | 0.561545 | 5_3:+8469907 | None:intergenic |
| GCATGGATTTCTCCTTCTGT+AGG | 0.561780 | 5_3:+8468340 | None:intergenic |
| AATGTATGAATGTAAATGGA+AGG | 0.566808 | 5_3:+8469884 | None:intergenic |
| TCGAGGCTGTATGGCATTGG+TGG | 0.567060 | 5_3:+8467100 | None:intergenic |
| GCCTCAAGTACTTTATCACC+TGG | 0.569263 | 5_3:-8468288 | Msa0796410:CDS |
| GGCGTCGCCACTTTCAGCAA+GGG | 0.571422 | 5_3:-8469117 | Msa0796410:CDS |
| GTAGCTTACATCTTGTTCCA+AGG | 0.571437 | 5_3:+8469019 | None:intergenic |
| GGGCAAAGCAGACAAGTGGT+TGG | 0.579650 | 5_3:+8465138 | None:intergenic |
| AACGAACCTGTAGTTGTCCA+TGG | 0.583760 | 5_3:+8466980 | None:intergenic |
| AGGCGTCGCCACTTTCAGCA+AGG | 0.584433 | 5_3:-8469118 | Msa0796410:CDS |
| GAAGCAAAGTGTCTGTGTCC+AGG | 0.591180 | 5_3:+8468270 | None:intergenic |
| CTGTTCTTGTAAATCTGCAG+TGG | 0.591557 | 5_3:-8467054 | Msa0796410:CDS |
| ATCTACACCAGTGCCCAAGC+AGG | 0.591863 | 5_3:-8467229 | Msa0796410:CDS |
| GTGCCCAAGCAGGCTTTCTG+AGG | 0.593720 | 5_3:-8467219 | Msa0796410:CDS |
| GTGCAGGCTGCTTACAACAT+TGG | 0.594552 | 5_3:-8465875 | Msa0796410:intron |
| AACTTACCGGAAATTCATCA+TGG | 0.594598 | 5_3:+8469423 | None:intergenic |
| CAGGCTGCTTACAACATTGG+CGG | 0.595259 | 5_3:-8465872 | Msa0796410:CDS |
| AACAAATGAGTACCCGTCCA+AGG | 0.597530 | 5_3:+8465792 | None:intergenic |
| CAATTGTGGTTGTCATGCAA+TGG | 0.600527 | 5_3:+8469077 | None:intergenic |
| AGTCGTCTCAGATCATAGAA+TGG | 0.602234 | 5_3:-8464621 | Msa0796410:CDS |
| TCCAGGTGATAAAGTACTTG+AGG | 0.602772 | 5_3:+8468287 | None:intergenic |
| TCTAGTCGAACAGCTCGAAA+GGG | 0.605265 | 5_3:-8466532 | Msa0796410:CDS |
| GTGTCGAGGCTGTATGGCAT+TGG | 0.605760 | 5_3:+8467097 | None:intergenic |
| CTCAAACCAGTTATGCTCCA+GGG | 0.609193 | 5_3:+8464529 | None:intergenic |
| AAATACTACCTTGTGAAACA+AGG | 0.613394 | 5_3:+8466301 | None:intergenic |
| AACTCGAAATTCTCAAGAGG+CGG | 0.616701 | 5_3:-8469473 | Msa0796410:CDS |
| CTAGAACTTTGTTCAGAAGG+TGG | 0.619959 | 5_3:+8467700 | None:intergenic |
| TTCTGAACAAAGTTCTAGTG+TGG | 0.620122 | 5_3:-8467695 | Msa0796410:CDS |
| TTGTCCACGCCGAAAACAGT+AGG | 0.628446 | 5_3:-8467145 | Msa0796410:CDS |
| GCATTGATGATATCCTTGGA+TGG | 0.631536 | 5_3:-8464714 | Msa0796410:CDS |
| TCTCTCGAGCAAGATGCGCA+TGG | 0.633218 | 5_3:+8468323 | None:intergenic |
| GCCTCGACACAGTATTGTAG+AGG | 0.637071 | 5_3:-8467084 | Msa0796410:CDS |
| ATGAGTACCCGTCCAAGGCG+AGG | 0.641672 | 5_3:+8465797 | None:intergenic |
| TTCCCCAAAGCTCTCTAAGG+AGG | 0.642648 | 5_3:-8466328 | Msa0796410:CDS |
| CGTAATATATCCAACCTTGG+TGG | 0.644617 | 5_3:+8467465 | None:intergenic |
| TCCTCTACAATACTGTGTCG+AGG | 0.646627 | 5_3:+8467083 | None:intergenic |
| GAGCTTGCAGAGGTCGCAGG+GGG | 0.648286 | 5_3:+8467593 | None:intergenic |
| CAAAGGGCAAAGCAGACAAG+TGG | 0.655584 | 5_3:+8465134 | None:intergenic |
| GCTGCCCTTAGGAAGAAAAG+TGG | 0.661083 | 5_3:-8465206 | Msa0796410:CDS |
| AGGAACTCGAAATTCTCAAG+AGG | 0.663545 | 5_3:-8469476 | Msa0796410:CDS |
| GTAGGTCACCGATATTGTCA+AGG | 0.668766 | 5_3:-8467127 | Msa0796410:CDS |
| GCTACAGCTACACCTACAGA+AGG | 0.670545 | 5_3:-8468352 | Msa0796410:CDS |
| GTAAATGGAAGGAAGAGTGT+GGG | 0.673445 | 5_3:+8469895 | None:intergenic |
| ATAATGATGAATGATGCAGA+AGG | 0.674072 | 5_3:-8469818 | Msa0796410:CDS |
| TTTGAAATAAGAGCTTGCAG+AGG | 0.679884 | 5_3:+8467583 | None:intergenic |
| GAGGCTGGCCTTGTTTCACA+AGG | 0.680836 | 5_3:-8466309 | Msa0796410:intron |
| CGTCTCAGATCATAGAATGG+CGG | 0.692691 | 5_3:-8464618 | Msa0796410:CDS |
| AGAGCTTGCAGAGGTCGCAG+GGG | 0.707036 | 5_3:+8467592 | None:intergenic |
| TGTAAATGGAAGGAAGAGTG+TGG | 0.707204 | 5_3:+8469894 | None:intergenic |
| AGCCTCCTTAGAGAGCTTTG+GGG | 0.739142 | 5_3:+8466326 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATATTTTCTATATTTTA+AGG | - | chr5_3:8465384-8465403 | Msa0796410:intron | 10.0% |
| !! | AAACAATAAAATATATTTAG+AGG | + | chr5_3:8468637-8468656 | None:intergenic | 10.0% |
| !!! | CTAAATATATTTTATTGTTT+TGG | - | chr5_3:8468637-8468656 | Msa0796410:intron | 10.0% |
| !! | AAACATATATCAAAATATTA+AGG | + | chr5_3:8469870-8469889 | None:intergenic | 10.0% |
| !!! | ACTATGATATTTAAGATTAT+AGG | - | chr5_3:8464893-8464912 | Msa0796410:intron | 15.0% |
| !! | TTAACTCAAAATTGAAAAAA+CGG | - | chr5_3:8466857-8466876 | Msa0796410:intron | 15.0% |
| !! | ATATAATATTATACTACAGA+TGG | - | chr5_3:8466885-8466904 | Msa0796410:intron | 15.0% |
| !!! | ATTTTATTGAAACTTAAGAA+GGG | - | chr5_3:8468065-8468084 | Msa0796410:intron | 15.0% |
| !!! | TAACTTGTTTATTCAATTAT+CGG | - | chr5_3:8468160-8468179 | Msa0796410:intron | 15.0% |
| !! | TTTATTCATACATGTTAATT+AGG | + | chr5_3:8469900-8469919 | None:intergenic | 15.0% |
| !! | AAGAAATGTATGAATGTAAA+TGG | + | chr5_3:8464387-8464406 | None:intergenic | 20.0% |
| !! | TAACACAAGTTCAATTTAAA+AGG | - | chr5_3:8465409-8465428 | Msa0796410:intron | 20.0% |
| !! | AACACAAGTTCAATTTAAAA+GGG | - | chr5_3:8465410-8465429 | Msa0796410:intron | 20.0% |
| !!! | AATCTGAAATTACTATATTG+TGG | - | chr5_3:8465605-8465624 | Msa0796410:intron | 20.0% |
| !!! | ATCTGAAATTACTATATTGT+GGG | - | chr5_3:8465606-8465625 | Msa0796410:intron | 20.0% |
| !! | GAAAAAAAAGTAGAAAGTAA+TGG | - | chr5_3:8465704-8465723 | Msa0796410:intron | 20.0% |
| !!! | GATTTAATTCTGAAAAGTAT+AGG | - | chr5_3:8465809-8465828 | Msa0796410:CDS | 20.0% |
| !!! | ATGAAATTTTAAATACCGAT+TGG | - | chr5_3:8466330-8466349 | Msa0796410:CDS | 20.0% |
| !!! | TAATATTTTCATGAAAGCTA+TGG | - | chr5_3:8466376-8466395 | Msa0796410:intron | 20.0% |
| !!! | TAAGTCTTTTGTCTAAAAAA+GGG | + | chr5_3:8466448-8466467 | None:intergenic | 20.0% |
| !!! | TTAAGTCTTTTGTCTAAAAA+AGG | + | chr5_3:8466449-8466468 | None:intergenic | 20.0% |
| !! | ATTTGAAGAATAGAATCTTT+GGG | - | chr5_3:8466709-8466728 | Msa0796410:intron | 20.0% |
| !!! | GGAAAAGAAAAAGTTTATTT+TGG | - | chr5_3:8466756-8466775 | Msa0796410:intron | 20.0% |
| !!! | AAGAAAAAGTTTATTTTGGA+AGG | - | chr5_3:8466760-8466779 | Msa0796410:intron | 20.0% |
| !! | CTTTGCATATAATTTCAAAA+CGG | - | chr5_3:8467307-8467326 | Msa0796410:intron | 20.0% |
| !! | AAAGAATTGTCTAATAAAAG+TGG | + | chr5_3:8467520-8467539 | None:intergenic | 20.0% |
| !!! | TTTATTAGACAATTCTTTTC+TGG | - | chr5_3:8467522-8467541 | Msa0796410:CDS | 20.0% |
| !!! | GTTTATATCTACATTCTTTT+TGG | - | chr5_3:8467665-8467684 | Msa0796410:CDS | 20.0% |
| !! | AACTTATATATGCTGAAAAT+TGG | + | chr5_3:8467873-8467892 | None:intergenic | 20.0% |
| !!! | GATTTTATTGAAACTTAAGA+AGG | - | chr5_3:8468064-8468083 | Msa0796410:intron | 20.0% |
| !! | AATTGAATAAACAAGTTACT+TGG | + | chr5_3:8468158-8468177 | None:intergenic | 20.0% |
| !! | AATGTATGTATGTACATTTA+CGG | + | chr5_3:8468519-8468538 | None:intergenic | 20.0% |
| !! | AATTATGTTTACAAGAACAT+AGG | + | chr5_3:8468775-8468794 | None:intergenic | 20.0% |
| !! | AATATCCAAAAGTTAACTTA+AGG | + | chr5_3:8468896-8468915 | None:intergenic | 20.0% |
| !! | AAATAAGAGAAAATTACCAT+AGG | + | chr5_3:8469175-8469194 | None:intergenic | 20.0% |
| !!! | TTGATCAACTTTTTAAATTC+AGG | + | chr5_3:8469360-8469379 | None:intergenic | 20.0% |
| ! | AATGTATGAATGTAAATGGA+AGG | + | chr5_3:8464383-8464402 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTAAGTGCTTGTT+TGG | - | chr5_3:8464600-8464619 | Msa0796410:CDS | 25.0% |
| !! | CATTCTTGTTTATACAATTG+TGG | + | chr5_3:8465204-8465223 | None:intergenic | 25.0% |
| ! | AATGTGAACTTATGTTATCT+CGG | + | chr5_3:8465326-8465345 | None:intergenic | 25.0% |
| ! | ACACAAGTTCAATTTAAAAG+GGG | - | chr5_3:8465411-8465430 | Msa0796410:intron | 25.0% |
| ! | TGTGTTTCACTAAATCAATT+TGG | - | chr5_3:8465559-8465578 | Msa0796410:intron | 25.0% |
| !! | AAGGTTTGCTTTATTGATAT+AGG | + | chr5_3:8465657-8465676 | None:intergenic | 25.0% |
| !!! | ACTTTCTACTTTTTTTTCCA+TGG | + | chr5_3:8465702-8465721 | None:intergenic | 25.0% |
| !!! | TAATTTGACATTTGCTATTC+AGG | - | chr5_3:8466022-8466041 | Msa0796410:intron | 25.0% |
| ! | TCAAAAAAAAAACTACGAGT+AGG | - | chr5_3:8466108-8466127 | Msa0796410:intron | 25.0% |
| ! | GCTAATTCTAATGTAAAGAA+TGG | - | chr5_3:8466270-8466289 | Msa0796410:intron | 25.0% |
| ! | GATTTGAAGAATAGAATCTT+TGG | - | chr5_3:8466708-8466727 | Msa0796410:intron | 25.0% |
| !! | TTTTCTTTTCCACTTGATAA+AGG | + | chr5_3:8466747-8466766 | None:intergenic | 25.0% |
| ! | ATGCATCTATAAATAAGCTA+AGG | - | chr5_3:8467373-8467392 | Msa0796410:intron | 25.0% |
| !!! | ACTATTTTGAACTAGAACAA+AGG | + | chr5_3:8467565-8467584 | None:intergenic | 25.0% |
| ! | AAATTGGTAAATCAAAACCA+TGG | + | chr5_3:8467857-8467876 | None:intergenic | 25.0% |
| ! | TTAGATAACATCTTCATCTA+AGG | + | chr5_3:8468038-8468057 | None:intergenic | 25.0% |
| !!! | ACTGATTTTTCTCAATGATA+CGG | - | chr5_3:8468278-8468297 | Msa0796410:CDS | 25.0% |
| ! | ATGTATGTATGTACATTTAC+GGG | + | chr5_3:8468518-8468537 | None:intergenic | 25.0% |
| !! | TAATGGTGGAATATATTGAT+CGG | - | chr5_3:8468597-8468616 | Msa0796410:intron | 25.0% |
| ! | AATATATTAATGTCTTCCTG+CGG | + | chr5_3:8468697-8468716 | None:intergenic | 25.0% |
| ! | ATTGTAGCTAAAAGTTTACT+CGG | - | chr5_3:8469398-8469417 | Msa0796410:intron | 25.0% |
| ! | AAAATCTTTCCACCAATTTA+GGG | + | chr5_3:8469512-8469531 | None:intergenic | 25.0% |
| ! | GTTTATGTTAACGTTATCTA+AGG | + | chr5_3:8469833-8469852 | None:intergenic | 25.0% |
| ATAATGATGAATGATGCAGA+AGG | - | chr5_3:8464446-8464465 | Msa0796410:three_prime_UTR | 30.0% | |
| !! | TATTTTTCAGTGCTTCTGAT+AGG | - | chr5_3:8464768-8464787 | Msa0796410:CDS | 30.0% |
| GCATTATAGAAAGAACTTAC+CGG | + | chr5_3:8464857-8464876 | None:intergenic | 30.0% | |
| !!! | TATAGGCTTGTTTGTTTTAG+CGG | - | chr5_3:8464910-8464929 | Msa0796410:intron | 30.0% |
| !!! | AAGCTAGCTTTTAAAAACCA+CGG | - | chr5_3:8464963-8464982 | Msa0796410:intron | 30.0% |
| ! | ATAGTCTGTGTTTGTTAAAG+CGG | + | chr5_3:8465025-8465044 | None:intergenic | 30.0% |
| CAAGATGTAAGCTACATATA+TGG | - | chr5_3:8465253-8465272 | Msa0796410:intron | 30.0% | |
| CATTTATACTTCCAACAAAC+TGG | - | chr5_3:8465342-8465361 | Msa0796410:intron | 30.0% | |
| CTAATTTCTTTCCCTTGTTA+AGG | + | chr5_3:8465510-8465529 | None:intergenic | 30.0% | |
| ACATGATATCAATAAGTTGC+AGG | + | chr5_3:8465542-8465561 | None:intergenic | 30.0% | |
| TTTCACTTAAGATGCTTCTA+AGG | + | chr5_3:8465676-8465695 | None:intergenic | 30.0% | |
| ACCATATTCCTTGTCAATTT+CGG | - | chr5_3:8465734-8465753 | Msa0796410:intron | 30.0% | |
| ATCAGTAAAATACTATGCCA+TGG | + | chr5_3:8465857-8465876 | None:intergenic | 30.0% | |
| !!! | CATAGTATTTTACTGATTCC+CGG | - | chr5_3:8465860-8465879 | Msa0796410:CDS | 30.0% |
| ! | TTCAAATGTTAAAAGAGTGC+AGG | + | chr5_3:8466062-8466081 | None:intergenic | 30.0% |
| ! | TTGGTTCTTCATTGATAAAC+TGG | - | chr5_3:8466191-8466210 | Msa0796410:intron | 30.0% |
| TACATTAGAATTAGCTCCTT+TGG | + | chr5_3:8466265-8466284 | None:intergenic | 30.0% | |
| !! | ATTTTAAATACCGATTGGCA+AGG | - | chr5_3:8466335-8466354 | Msa0796410:CDS | 30.0% |
| !! | TTTTAAATACCGATTGGCAA+GGG | - | chr5_3:8466336-8466355 | Msa0796410:CDS | 30.0% |
| CTCATTCAAAACAAGAATCA+AGG | - | chr5_3:8466601-8466620 | Msa0796410:intron | 30.0% | |
| ATACGTAATATATCCAACCT+TGG | + | chr5_3:8466805-8466824 | None:intergenic | 30.0% | |
| AACAAGCAACTAGAAACATT+GGG | + | chr5_3:8466828-8466847 | None:intergenic | 30.0% | |
| AAACAAGCAACTAGAAACAT+TGG | + | chr5_3:8466829-8466848 | None:intergenic | 30.0% | |
| TTAAACATATGCCTAAGTGT+CGG | - | chr5_3:8467332-8467351 | Msa0796410:intron | 30.0% | |
| ATAATTGAATTCCGACACTT+AGG | + | chr5_3:8467346-8467365 | None:intergenic | 30.0% | |
| CAAACAGAGAATTAATCTCA+AGG | + | chr5_3:8467409-8467428 | None:intergenic | 30.0% | |
| CTTGAGATTAATTCTCTGTT+TGG | - | chr5_3:8467407-8467426 | Msa0796410:intron | 30.0% | |
| ! | TAGTAGTTCCTTGGTAATAT+TGG | - | chr5_3:8467449-8467468 | Msa0796410:intron | 30.0% |
| AAATACTACCTTGTGAAACA+AGG | + | chr5_3:8467966-8467985 | None:intergenic | 30.0% | |
| AAAGCTTGTCAAGAATACTT+TGG | + | chr5_3:8468108-8468127 | None:intergenic | 30.0% | |
| TTTACTGTGACAAAAAGTCT+AGG | - | chr5_3:8468125-8468144 | Msa0796410:intron | 30.0% | |
| AAGAAATTCCTGCATTTACA+AGG | - | chr5_3:8468189-8468208 | Msa0796410:intron | 30.0% | |
| CATGTCAAAGAAAGTTATCT+TGG | + | chr5_3:8468241-8468260 | None:intergenic | 30.0% | |
| AATGTGCAGCTTGATTAAAT+TGG | - | chr5_3:8468722-8468741 | Msa0796410:intron | 30.0% | |
| TTTACATTCTATAGTCCAAG+CGG | + | chr5_3:8468813-8468832 | None:intergenic | 30.0% | |
| TTAACTTAAGGTCCTAATGA+AGG | + | chr5_3:8468884-8468903 | None:intergenic | 30.0% | |
| ! | TAGGACCTTAAGTTAACTTT+TGG | - | chr5_3:8468888-8468907 | Msa0796410:intron | 30.0% |
| ACAACTCATCAACTCAAATT+TGG | - | chr5_3:8469090-8469109 | Msa0796410:CDS | 30.0% | |
| CAACTCATCAACTCAAATTT+GGG | - | chr5_3:8469091-8469110 | Msa0796410:CDS | 30.0% | |
| TTTGTAGTTTGAATATGACC+AGG | - | chr5_3:8469200-8469219 | Msa0796410:intron | 30.0% | |
| TAACTAACATTCACATTTCC+TGG | + | chr5_3:8469221-8469240 | None:intergenic | 30.0% | |
| TAAAGTCATTCTCCCTAAAT+TGG | - | chr5_3:8469497-8469516 | Msa0796410:intron | 30.0% | |
| GAAAATCTTTCCACCAATTT+AGG | + | chr5_3:8469513-8469532 | None:intergenic | 30.0% | |
| ! | TACCTGAATTTTGAACTGTA+AGG | + | chr5_3:8469672-8469691 | None:intergenic | 30.0% |
| CTCAATTTGTCTAGCATGTT+TGG | + | chr5_3:8464683-8464702 | None:intergenic | 35.0% | |
| CAAACATGCTAGACAAATTG+AGG | - | chr5_3:8464681-8464700 | Msa0796410:CDS | 35.0% | |
| AACTTACCGGAAATTCATCA+TGG | + | chr5_3:8464844-8464863 | None:intergenic | 35.0% | |
| ! | TGTGAGTTGAGATGATTCAT+TGG | - | chr5_3:8465105-8465124 | Msa0796410:intron | 35.0% |
| ! | TTCAAATCATAGAGCATCCT+TGG | - | chr5_3:8465228-8465247 | Msa0796410:CDS | 35.0% |
| TCAGAGGTAATATTGCAGTT+AGG | + | chr5_3:8465290-8465309 | None:intergenic | 35.0% | |
| ACTTATGTTATCTCGGTCTA+TGG | + | chr5_3:8465319-8465338 | None:intergenic | 35.0% | |
| ! | GATTTTCATAGCCAGTTTGT+TGG | + | chr5_3:8465356-8465375 | None:intergenic | 35.0% |
| ! | AGTATGAATGGCCTTAACAA+GGG | - | chr5_3:8465496-8465515 | Msa0796410:intron | 35.0% |
| CATCTTAAGTGAAATCACCA+TGG | - | chr5_3:8465682-8465701 | Msa0796410:intron | 35.0% | |
| TCCGAAATTGACAAGGAATA+TGG | + | chr5_3:8465738-8465757 | None:intergenic | 35.0% | |
| !! | TATCTAGGTTCTGAAACATC+TGG | - | chr5_3:8465771-8465790 | Msa0796410:intron | 35.0% |
| !! | ATCTAGGTTCTGAAACATCT+GGG | - | chr5_3:8465772-8465791 | Msa0796410:intron | 35.0% |
| ACATCTGGGAAGAAAAATGT+TGG | - | chr5_3:8465786-8465805 | Msa0796410:intron | 35.0% | |
| CATCTGGGAAGAAAAATGTT+GGG | - | chr5_3:8465787-8465806 | Msa0796410:intron | 35.0% | |
| !! | GACATTTGCTATTCAGGTAA+TGG | - | chr5_3:8466028-8466047 | Msa0796410:intron | 35.0% |
| GTTGAGACATAAACCACTAT+TGG | - | chr5_3:8466135-8466154 | Msa0796410:intron | 35.0% | |
| ! | AACTGAAAGCTTACGCATTT+TGG | + | chr5_3:8466167-8466186 | None:intergenic | 35.0% |
| CGTAAGCTTTCAGTTCAATT+TGG | - | chr5_3:8466172-8466191 | Msa0796410:intron | 35.0% | |
| ACATTCACAACTAAGCTGTT+AGG | - | chr5_3:8466231-8466250 | Msa0796410:intron | 35.0% | |
| GAACGAGTCTCTATGATTAT+TGG | + | chr5_3:8466310-8466329 | None:intergenic | 35.0% | |
| TCCTATAAGTTCATGTTGTG+TGG | - | chr5_3:8466400-8466419 | Msa0796410:intron | 35.0% | |
| TCCACACAACATGAACTTAT+AGG | + | chr5_3:8466404-8466423 | None:intergenic | 35.0% | |
| ! | AATTGAGTTGCTTGAAGAAG+AGG | - | chr5_3:8466476-8466495 | Msa0796410:CDS | 35.0% |
| ! | TTTTTGAACAGTGTGTTAGC+CGG | - | chr5_3:8466541-8466560 | Msa0796410:intron | 35.0% |
| ACACTAGAACTTTGTTCAGA+AGG | + | chr5_3:8466570-8466589 | None:intergenic | 35.0% | |
| ! | TTCTGAACAAAGTTCTAGTG+TGG | - | chr5_3:8466569-8466588 | Msa0796410:intron | 35.0% |
| !!! | GATTCTTGTTTTGAATGAGC+AGG | + | chr5_3:8466600-8466619 | None:intergenic | 35.0% |
| AAGCGCTTGAAATTATGCTT+GGG | + | chr5_3:8466632-8466651 | None:intergenic | 35.0% | |
| ! | AAAGCGCTTGAAATTATGCT+TGG | + | chr5_3:8466633-8466652 | None:intergenic | 35.0% |
| ! | TTTGAAATAAGAGCTTGCAG+AGG | + | chr5_3:8466684-8466703 | None:intergenic | 35.0% |
| TAGGATTAAGGTGAGAATGT+TGG | + | chr5_3:8466951-8466970 | None:intergenic | 35.0% | |
| TCTCACCTTAATCCTATGTT+AGG | - | chr5_3:8466955-8466974 | Msa0796410:intron | 35.0% | |
| GTGAACCTAACATAGGATTA+AGG | + | chr5_3:8466963-8466982 | None:intergenic | 35.0% | |
| !!! | TCTTTTAAAGCTCGCAATAC+AGG | + | chr5_3:8467013-8467032 | None:intergenic | 35.0% |
| AATCTGCAGTGGAAATATCT+TGG | - | chr5_3:8467221-8467240 | Msa0796410:CDS | 35.0% | |
| CTTAACAACTAGTAGTTCCT+TGG | - | chr5_3:8467440-8467459 | Msa0796410:intron | 35.0% | |
| CAATCATGCCAATATTACCA+AGG | + | chr5_3:8467460-8467479 | None:intergenic | 35.0% | |
| TTCAAAATAGTCAGACTACC+AGG | - | chr5_3:8467574-8467593 | Msa0796410:CDS | 35.0% | |
| ATAATATGAAGAAGCTGTCC+TGG | + | chr5_3:8467595-8467614 | None:intergenic | 35.0% | |
| TGACAGGCATATTTAGCATA+TGG | - | chr5_3:8467911-8467930 | Msa0796410:intron | 35.0% | |
| ! | TTGTTGTTCCTTGTAAATGC+AGG | + | chr5_3:8468200-8468219 | None:intergenic | 35.0% |
| AGAAAGTTATCTTGGAACGA+AGG | + | chr5_3:8468233-8468252 | None:intergenic | 35.0% | |
| ACAAAATATCGCTTGCTCTA+TGG | + | chr5_3:8468438-8468457 | None:intergenic | 35.0% | |
| CATGTATGAACGAAGTCTAA+TGG | - | chr5_3:8468580-8468599 | Msa0796410:intron | 35.0% | |
| GATATGCTTAGACCTTCATT+AGG | - | chr5_3:8468869-8468888 | Msa0796410:intron | 35.0% | |
| !! | TTCACCACTTTTCTTCCTAA+GGG | + | chr5_3:8469065-8469084 | None:intergenic | 35.0% |
| ! | TGATGCATTGATGAATCACA+CGG | - | chr5_3:8469288-8469307 | Msa0796410:intron | 35.0% |
| !! | ATCAGCATTGATGATATCCT+TGG | - | chr5_3:8469546-8469565 | Msa0796410:intron | 35.0% |
| TGATATCCTTGGATGGATAA+TGG | - | chr5_3:8469557-8469576 | Msa0796410:intron | 35.0% | |
| ! | CATTTTCCATTATCCATCCA+AGG | + | chr5_3:8469566-8469585 | None:intergenic | 35.0% |
| ! | ATTCAGGTACATGTTTTCGA+AGG | - | chr5_3:8469683-8469702 | Msa0796410:intron | 35.0% |
| TTCACTTTCTTCCTCTCTTC+AGG | - | chr5_3:8464346-8464365 | Msa0796410:three_prime_UTR | 40.0% | |
| ! | GTAAATGGAAGGAAGAGTGT+GGG | + | chr5_3:8464372-8464391 | None:intergenic | 40.0% |
| TGTAAATGGAAGGAAGAGTG+TGG | + | chr5_3:8464373-8464392 | None:intergenic | 40.0% | |
| TAGATCGTTTGTGTCGAGTT+TGG | + | chr5_3:8464511-8464530 | None:intergenic | 40.0% | |
| AGGAACTCGAAATTCTCAAG+AGG | - | chr5_3:8464788-8464807 | Msa0796410:CDS | 40.0% | |
| AACTCGAAATTCTCAAGAGG+CGG | - | chr5_3:8464791-8464810 | Msa0796410:CDS | 40.0% | |
| GAAAGGCCATGATGAATTTC+CGG | - | chr5_3:8464835-8464854 | Msa0796410:CDS | 40.0% | |
| CTTCACATAAAACGCCAGTT+TGG | + | chr5_3:8464946-8464965 | None:intergenic | 40.0% | |
| ! | TTTTGTGACATGCACTGTGT+TGG | - | chr5_3:8465057-8465076 | Msa0796410:intron | 40.0% |
| ! | GGTTTTGCCATGATTTGAAC+AGG | - | chr5_3:8465126-8465145 | Msa0796410:CDS | 40.0% |
| CAATTGTGGTTGTCATGCAA+TGG | + | chr5_3:8465190-8465209 | None:intergenic | 40.0% | |
| GTAGCTTACATCTTGTTCCA+AGG | + | chr5_3:8465248-8465267 | None:intergenic | 40.0% | |
| TTAAAAGGGGTGAAAGCCAA+TGG | - | chr5_3:8465424-8465443 | Msa0796410:intron | 40.0% | |
| ACTGTGATTCATCGCATTGT+GGG | + | chr5_3:8465479-8465498 | None:intergenic | 40.0% | |
| TACTGTGATTCATCGCATTG+TGG | + | chr5_3:8465480-8465499 | None:intergenic | 40.0% | |
| GCGATGAATCACAGTATGAA+TGG | - | chr5_3:8465484-8465503 | Msa0796410:intron | 40.0% | |
| ! | CAGTATGAATGGCCTTAACA+AGG | - | chr5_3:8465495-8465514 | Msa0796410:intron | 40.0% |
| GAGATGCGTATTGTGTATCT+AGG | - | chr5_3:8465756-8465775 | Msa0796410:intron | 40.0% | |
| ! | GTTTTCCTGTATGATGACCA+TGG | - | chr5_3:8465837-8465856 | Msa0796410:CDS | 40.0% |
| CATATCAACATAGGAACTCC+GGG | + | chr5_3:8465881-8465900 | None:intergenic | 40.0% | |
| GCATATCAACATAGGAACTC+CGG | + | chr5_3:8465882-8465901 | None:intergenic | 40.0% | |
| GAGTTCCTATGTTGATATGC+AGG | - | chr5_3:8465882-8465901 | Msa0796410:intron | 40.0% | |
| CTCAACCTGCATATCAACAT+AGG | + | chr5_3:8465890-8465909 | None:intergenic | 40.0% | |
| ! | TCCAGGTGATAAAGTACTTG+AGG | + | chr5_3:8465980-8465999 | None:intergenic | 40.0% |
| GAAGATGCTGAGATATGAGT+AGG | - | chr5_3:8466079-8466098 | Msa0796410:intron | 40.0% | |
| AAAAAAACTACGAGTAGGCG+TGG | - | chr5_3:8466113-8466132 | Msa0796410:intron | 40.0% | |
| CTGTTAGGAGTTAGAACCAA+AGG | - | chr5_3:8466246-8466265 | Msa0796410:intron | 40.0% | |
| ! | AGCATGTTCTTGCTATGTAC+AGG | - | chr5_3:8466514-8466533 | Msa0796410:CDS | 40.0% |
| CTAGAACTTTGTTCAGAAGG+TGG | + | chr5_3:8466567-8466586 | None:intergenic | 40.0% | |
| AGTCATGCTCCTTTATCAAG+TGG | - | chr5_3:8466735-8466754 | Msa0796410:intron | 40.0% | |
| AATATATCCAACCTTGGTGG+TGG | + | chr5_3:8466799-8466818 | None:intergenic | 40.0% | |
| CGTAATATATCCAACCTTGG+TGG | + | chr5_3:8466802-8466821 | None:intergenic | 40.0% | |
| ACTTCTCGTGAACCTAACAT+AGG | + | chr5_3:8466970-8466989 | None:intergenic | 40.0% | |
| GTATGGCAACTATGTATTGC+TGG | - | chr5_3:8467080-8467099 | Msa0796410:CDS | 40.0% | |
| ! | TATCGGTGACCTACTGTTTT+CGG | + | chr5_3:8467131-8467150 | None:intergenic | 40.0% |
| CTGTTCTTGTAAATCTGCAG+TGG | - | chr5_3:8467210-8467229 | Msa0796410:CDS | 40.0% | |
| CTGTTCGACTAGAATTCTGA+AGG | + | chr5_3:8467725-8467744 | None:intergenic | 40.0% | |
| AAGGGTGAATGTCAGTCAAA+TGG | - | chr5_3:8467750-8467769 | Msa0796410:CDS | 40.0% | |
| GTGATCGAAAAATTGCGTTC+TGG | - | chr5_3:8467776-8467795 | Msa0796410:CDS | 40.0% | |
| CACACTCATATGAATCACCA+TGG | - | chr5_3:8467837-8467856 | Msa0796410:intron | 40.0% | |
| TGAGTACAATTGTGTAGTGC+AGG | - | chr5_3:8468373-8468392 | Msa0796410:intron | 40.0% | |
| CACACATGTGAATTGTTGTC+AGG | - | chr5_3:8468551-8468570 | Msa0796410:intron | 40.0% | |
| GTATGAACGAAGTCTAATGG+TGG | - | chr5_3:8468583-8468602 | Msa0796410:intron | 40.0% | |
| !! | GTTTAGTTTGTTTCTCCGCT+TGG | - | chr5_3:8468795-8468814 | Msa0796410:intron | 40.0% |
| ! | TGCGTTTTTATCAAACGCAG+TGG | - | chr5_3:8469017-8469036 | Msa0796410:intron | 40.0% |
| !! | CTTCACCACTTTTCTTCCTA+AGG | + | chr5_3:8469066-8469085 | None:intergenic | 40.0% |
| TTCGAATCTAAGAGAAGAGC+TGG | - | chr5_3:8469422-8469441 | Msa0796410:intron | 40.0% | |
| TGTCTGTAGAAACTCTCTCT+TGG | + | chr5_3:8469454-8469473 | None:intergenic | 40.0% | |
| AGTCATTCTCCCTAAATTGG+TGG | - | chr5_3:8469500-8469519 | Msa0796410:intron | 40.0% | |
| ! | GCATTGATGATATCCTTGGA+TGG | - | chr5_3:8469550-8469569 | Msa0796410:intron | 40.0% |
| AGTCGTCTCAGATCATAGAA+TGG | - | chr5_3:8469643-8469662 | Msa0796410:intron | 40.0% | |
| GGCCTTACAGTTCAAAATTC+AGG | - | chr5_3:8469667-8469686 | Msa0796410:intron | 40.0% | |
| AGCTATGATCTTATTGTCCC+TGG | - | chr5_3:8469718-8469737 | Msa0796410:intron | 40.0% | |
| !! | ATAACTGGTTTGAGGAAGCT+AGG | - | chr5_3:8469744-8469763 | Msa0796410:intron | 40.0% |
| ! | AATGATGCAGAAGGAAGTGC+TGG | - | chr5_3:8464455-8464474 | Msa0796410:three_prime_UTR | 45.0% |
| CTCGACACAAACGATCTAAC+AGG | - | chr5_3:8464513-8464532 | Msa0796410:three_prime_UTR | 45.0% | |
| !! | GTTTGGTAGCGTACTGAGTT+TGG | - | chr5_3:8464617-8464636 | Msa0796410:CDS | 45.0% |
| ! | GTGGTGTTTTGCGTTCCATA+GGG | - | chr5_3:8464813-8464832 | Msa0796410:CDS | 45.0% |
| ! | GTTTTGCGTTCCATAGGGAA+AGG | - | chr5_3:8464818-8464837 | Msa0796410:CDS | 45.0% |
| TTCATCATGGCCTTTCCCTA+TGG | + | chr5_3:8464831-8464850 | None:intergenic | 45.0% | |
| GCGGTGAAAATTGTCCAAAC+TGG | - | chr5_3:8464929-8464948 | Msa0796410:intron | 45.0% | |
| ! | GTCTGTGTTTGTTAAAGCGG+TGG | + | chr5_3:8465022-8465041 | None:intergenic | 45.0% |
| CGGTCTATGGAATAGTTCAG+AGG | + | chr5_3:8465306-8465325 | None:intergenic | 45.0% | |
| TGTGATTCATCGCATTGTGG+GGG | + | chr5_3:8465477-8465496 | None:intergenic | 45.0% | |
| CTGTGATTCATCGCATTGTG+GGG | + | chr5_3:8465478-8465497 | None:intergenic | 45.0% | |
| ACGCATCTCCGAAATTGACA+AGG | + | chr5_3:8465745-8465764 | None:intergenic | 45.0% | |
| CTATGCCATGGTCATCATAC+AGG | + | chr5_3:8465845-8465864 | None:intergenic | 45.0% | |
| GCATGGATTTCTCCTTCTGT+AGG | + | chr5_3:8465927-8465946 | None:intergenic | 45.0% | |
| ATCTTGCTCGAGAGAGCAAT+GGG | - | chr5_3:8465949-8465968 | Msa0796410:intron | 45.0% | |
| GCCTCAAGTACTTTATCACC+TGG | - | chr5_3:8465976-8465995 | Msa0796410:intron | 45.0% | |
| ACACAGACACTTTGCTTCTC+AGG | - | chr5_3:8465999-8466018 | Msa0796410:intron | 45.0% | |
| ! | GCTATTCAGGTAATGGCGAA+CGG | - | chr5_3:8466035-8466054 | Msa0796410:intron | 45.0% |
| ! | CTATTCAGGTAATGGCGAAC+GGG | - | chr5_3:8466036-8466055 | Msa0796410:intron | 45.0% |
| !! | ATTTTGGCGAAGGCCAATAG+TGG | + | chr5_3:8466151-8466170 | None:intergenic | 45.0% |
| !! | AAGCTTACGCATTTTGGCGA+AGG | + | chr5_3:8466161-8466180 | None:intergenic | 45.0% |
| TAGCAAGAACATGCTGTTCG+CGG | + | chr5_3:8466509-8466528 | None:intergenic | 45.0% | |
| AACTTTGTTCAGAAGGTGGC+CGG | + | chr5_3:8466563-8466582 | None:intergenic | 45.0% | |
| TGAGGAGATGGTGAAGTGTA+TGG | - | chr5_3:8467063-8467082 | Msa0796410:CDS | 45.0% | |
| GTAGGTCACCGATATTGTCA+AGG | - | chr5_3:8467137-8467156 | Msa0796410:CDS | 45.0% | |
| GTGGAGGACCTTGACAATAT+CGG | + | chr5_3:8467148-8467167 | None:intergenic | 45.0% | |
| AATACTGTGTCGAGGCTGTA+TGG | + | chr5_3:8467176-8467195 | None:intergenic | 45.0% | |
| TCCTCTACAATACTGTGTCG+AGG | + | chr5_3:8467184-8467203 | None:intergenic | 45.0% | |
| TTCTCATGCTTCTTACGCCA+TGG | - | chr5_3:8467267-8467286 | Msa0796410:CDS | 45.0% | |
| AACGAACCTGTAGTTGTCCA+TGG | + | chr5_3:8467287-8467306 | None:intergenic | 45.0% | |
| TTCTAGTCGAACAGCTCGAA+AGG | - | chr5_3:8467731-8467750 | Msa0796410:CDS | 45.0% | |
| TCTAGTCGAACAGCTCGAAA+GGG | - | chr5_3:8467732-8467751 | Msa0796410:CDS | 45.0% | |
| ! | AACTTCCTTTTCCTGCTGAC+AGG | - | chr5_3:8467895-8467914 | Msa0796410:intron | 45.0% |
| ATATGCCTGTCAGCAGGAAA+AGG | + | chr5_3:8467903-8467922 | None:intergenic | 45.0% | |
| TGCTAAATATGCCTGTCAGC+AGG | + | chr5_3:8467909-8467928 | None:intergenic | 45.0% | |
| GAATTCCCCAAAGCTCTCTA+AGG | - | chr5_3:8467933-8467952 | Msa0796410:intron | 45.0% | |
| AACAAATGAGTACCCGTCCA+AGG | + | chr5_3:8468475-8468494 | None:intergenic | 45.0% | |
| CGTCTCAGATCATAGAATGG+CGG | - | chr5_3:8469646-8469665 | Msa0796410:intron | 45.0% | |
| TATTGTCCCTGGAGCATAAC+TGG | - | chr5_3:8469729-8469748 | Msa0796410:intron | 45.0% | |
| CTCAAACCAGTTATGCTCCA+GGG | + | chr5_3:8469738-8469757 | None:intergenic | 45.0% | |
| !! | AAAAAATAAAATAAAAATCA+AGG | + | chr5_3:8465083-8465102 | None:intergenic | 5.0% |
| !! | AACTATTTATTTAAAAAAAA+AGG | + | chr5_3:8468322-8468341 | None:intergenic | 5.0% |
| TCGAAATTCTCAAGAGGCGG+TGG | - | chr5_3:8464794-8464813 | Msa0796410:CDS | 50.0% | |
| ! | GGTGGTGTTTTGCGTTCCAT+AGG | - | chr5_3:8464812-8464831 | Msa0796410:CDS | 50.0% |
| AGTGCAAATACCGCGTTACG+AGG | + | chr5_3:8464998-8465017 | None:intergenic | 50.0% | |
| CTAGAAGCCCTTGCTGAAAG+TGG | + | chr5_3:8465157-8465176 | None:intergenic | 50.0% | |
| CACTTTCAGCAAGGGCTTCT+AGG | - | chr5_3:8465155-8465174 | Msa0796410:CDS | 50.0% | |
| GGGTGAAAGCCAATGGTTGT+TGG | - | chr5_3:8465431-8465450 | Msa0796410:intron | 50.0% | |
| !! | GTTGTTGGCTCTCGCAGAAA+GGG | - | chr5_3:8465446-8465465 | Msa0796410:intron | 50.0% |
| GCTACAGCTACACCTACAGA+AGG | - | chr5_3:8465912-8465931 | Msa0796410:intron | 50.0% | |
| CATCTTGCTCGAGAGAGCAA+TGG | - | chr5_3:8465948-8465967 | Msa0796410:intron | 50.0% | |
| ! | GAAGCAAAGTGTCTGTGTCC+AGG | + | chr5_3:8465997-8466016 | None:intergenic | 50.0% |
| ATTCGCATGCCCTTGCCAAT+CGG | + | chr5_3:8466348-8466367 | None:intergenic | 50.0% | |
| ! | TTTTCCCGATTCCACCACCA+AGG | - | chr5_3:8466785-8466804 | Msa0796410:intron | 50.0% |
| !! | TCCAACCTTGGTGGTGGAAT+CGG | + | chr5_3:8466793-8466812 | None:intergenic | 50.0% |
| TCTCCTCAGAAAGCCTGCTT+GGG | + | chr5_3:8467051-8467070 | None:intergenic | 50.0% | |
| ATCTCCTCAGAAAGCCTGCT+TGG | + | chr5_3:8467052-8467071 | None:intergenic | 50.0% | |
| ! | AAGCAGGCTTTCTGAGGAGA+TGG | - | chr5_3:8467051-8467070 | Msa0796410:CDS | 50.0% |
| TTGTCCACGCCGAAAACAGT+AGG | - | chr5_3:8467119-8467138 | Msa0796410:CDS | 50.0% | |
| GCCTCGACACAGTATTGTAG+AGG | - | chr5_3:8467180-8467199 | Msa0796410:CDS | 50.0% | |
| CTTACGCCATGGACAACTAC+AGG | - | chr5_3:8467278-8467297 | Msa0796410:CDS | 50.0% | |
| ! | TTCCCCAAAGCTCTCTAAGG+AGG | - | chr5_3:8467936-8467955 | Msa0796410:intron | 50.0% |
| AGCCTCCTTAGAGAGCTTTG+GGG | + | chr5_3:8467941-8467960 | None:intergenic | 50.0% | |
| CAGCCTCCTTAGAGAGCTTT+GGG | + | chr5_3:8467942-8467961 | None:intergenic | 50.0% | |
| GTGCAGGCTGCTTACAACAT+TGG | - | chr5_3:8468389-8468408 | Msa0796410:intron | 50.0% | |
| CAGGCTGCTTACAACATTGG+CGG | - | chr5_3:8468392-8468411 | Msa0796410:intron | 50.0% | |
| CACTGATACTATGTTGCCGC+AGG | - | chr5_3:8468678-8468697 | Msa0796410:intron | 50.0% | |
| GCTGCCCTTAGGAAGAAAAG+TGG | - | chr5_3:8469058-8469077 | Msa0796410:CDS | 50.0% | |
| GGCAAAGCAGACAAGTGGTT+GGG | + | chr5_3:8469128-8469147 | None:intergenic | 50.0% | |
| CAAAGGGCAAAGCAGACAAG+TGG | + | chr5_3:8469133-8469152 | None:intergenic | 50.0% | |
| CATAGGATCCGACAATGCTC+CGG | + | chr5_3:8469158-8469177 | None:intergenic | 50.0% | |
| CCTCAAACCAGTTATGCTCC+AGG | + | chr5_3:8469739-8469758 | None:intergenic | 50.0% | |
| !! | CCTGGAGCATAACTGGTTTG+AGG | - | chr5_3:8469736-8469755 | Msa0796410:intron | 50.0% |
| ! | AAGAGTGTGGGCCTGAAGAG+AGG | + | chr5_3:8464360-8464379 | None:intergenic | 55.0% |
| ! | TTACGAGGCACTTTCTGCCG+TGG | + | chr5_3:8464983-8465002 | None:intergenic | 55.0% |
| !! | GCAGAAAGTGCCTCGTAACG+CGG | - | chr5_3:8464985-8465004 | Msa0796410:intron | 55.0% |
| GGCGACGCCTGTTCAAATCA+TGG | + | chr5_3:8465136-8465155 | None:intergenic | 55.0% | |
| CTGCGAGAGCCAACAACCAT+TGG | + | chr5_3:8465443-8465462 | None:intergenic | 55.0% | |
| !! | GGTTGTTGGCTCTCGCAGAA+AGG | - | chr5_3:8465445-8465464 | Msa0796410:intron | 55.0% |
| TCTCTCGAGCAAGATGCGCA+TGG | + | chr5_3:8465944-8465963 | None:intergenic | 55.0% | |
| AAGAGCTTGCAGAGGTCGCA+GGG | + | chr5_3:8466676-8466695 | None:intergenic | 55.0% | |
| TAAGAGCTTGCAGAGGTCGC+AGG | + | chr5_3:8466677-8466696 | None:intergenic | 55.0% | |
| !! | CCAACCTTGGTGGTGGAATC+GGG | + | chr5_3:8466792-8466811 | None:intergenic | 55.0% |
| !! | TGCTTGGGCACTGGTGTAGA+TGG | + | chr5_3:8467036-8467055 | None:intergenic | 55.0% |
| ATCTACACCAGTGCCCAAGC+AGG | - | chr5_3:8467035-8467054 | Msa0796410:CDS | 55.0% | |
| ! | GTGACCTACTGTTTTCGGCG+TGG | + | chr5_3:8467126-8467145 | None:intergenic | 55.0% |
| !! | AGGCTGTATGGCATTGGTGG+AGG | + | chr5_3:8467164-8467183 | None:intergenic | 55.0% |
| ! | TCGAGGCTGTATGGCATTGG+TGG | + | chr5_3:8467167-8467186 | None:intergenic | 55.0% |
| GTGTCGAGGCTGTATGGCAT+TGG | + | chr5_3:8467170-8467189 | None:intergenic | 55.0% | |
| CCAGCCTCCTTAGAGAGCTT+TGG | + | chr5_3:8467943-8467962 | None:intergenic | 55.0% | |
| ! | CCAAAGCTCTCTAAGGAGGC+TGG | - | chr5_3:8467940-8467959 | Msa0796410:intron | 55.0% |
| !! | GAGGCTGGCCTTGTTTCACA+AGG | - | chr5_3:8467955-8467974 | Msa0796410:intron | 55.0% |
| TGTTTCCGAACACCTCGCCT+TGG | - | chr5_3:8468455-8468474 | Msa0796410:intron | 55.0% | |
| GTGTTGTGTCTGCTGCCCTT+AGG | - | chr5_3:8469047-8469066 | Msa0796410:CDS | 55.0% | |
| GGGCAAAGCAGACAAGTGGT+TGG | + | chr5_3:8469129-8469148 | None:intergenic | 55.0% | |
| GTCTGCTTTGCCCTTTGCAC+CGG | - | chr5_3:8469136-8469155 | Msa0796410:intron | 55.0% | |
| CGACAATGCTCCGGTGCAAA+GGG | + | chr5_3:8469149-8469168 | None:intergenic | 55.0% | |
| !! | CCTTTGCACCGGAGCATTGT+CGG | - | chr5_3:8469147-8469166 | Msa0796410:intron | 55.0% |
| !! | CGGAGCATTGTCGGATCCTA+TGG | - | chr5_3:8469156-8469175 | Msa0796410:intron | 55.0% |
| ! | AGGCGTCGCCACTTTCAGCA+AGG | - | chr5_3:8465146-8465165 | Msa0796410:CDS | 60.0% |
| ! | GGCGTCGCCACTTTCAGCAA+GGG | - | chr5_3:8465147-8465166 | Msa0796410:CDS | 60.0% |
| AGAGCTTGCAGAGGTCGCAG+GGG | + | chr5_3:8466675-8466694 | None:intergenic | 60.0% | |
| CCCGATTCCACCACCAAGGT+TGG | - | chr5_3:8466789-8466808 | Msa0796410:intron | 60.0% | |
| CAGAAAGCCTGCTTGGGCAC+TGG | + | chr5_3:8467045-8467064 | None:intergenic | 60.0% | |
| GTGCCCAAGCAGGCTTTCTG+AGG | - | chr5_3:8467045-8467064 | Msa0796410:CDS | 60.0% | |
| TCCGAACACCTCGCCTTGGA+CGG | - | chr5_3:8468459-8468478 | Msa0796410:intron | 60.0% | |
| ATGAGTACCCGTCCAAGGCG+AGG | + | chr5_3:8468470-8468489 | None:intergenic | 60.0% | |
| CCGACAATGCTCCGGTGCAA+AGG | + | chr5_3:8469150-8469169 | None:intergenic | 60.0% | |
| GAGCTTGCAGAGGTCGCAGG+GGG | + | chr5_3:8466674-8466693 | None:intergenic | 65.0% | |
| ! | CCCGTCCAAGGCGAGGTGTT+CGG | + | chr5_3:8468463-8468482 | None:intergenic | 65.0% |
| CCGAACACCTCGCCTTGGAC+GGG | - | chr5_3:8468460-8468479 | Msa0796410:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8464346 | 8469940 | 8464346 | ID=Msa0796410;Name=Msa0796410 |
| chr5_3 | mRNA | 8464346 | 8469940 | 8464346 | ID=Msa0796410-mRNA-1;Parent=Msa0796410;Name=Msa0796410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=103|1|1|1|1|1|11|215|591 |
| chr5_3 | exon | 8464346 | 8464881 | 8464346 | ID=Msa0796410-mRNA-1:exon:3510;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8465109 | 8465249 | 8465109 | ID=Msa0796410-mRNA-1:exon:3509;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8465805 | 8465891 | 8465805 | ID=Msa0796410-mRNA-1:exon:3508;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8466310 | 8466369 | 8466310 | ID=Msa0796410-mRNA-1:exon:3507;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8466458 | 8466557 | 8466458 | ID=Msa0796410-mRNA-1:exon:3506;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8466987 | 8467309 | 8466987 | ID=Msa0796410-mRNA-1:exon:3505;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8467480 | 8467830 | 8467480 | ID=Msa0796410-mRNA-1:exon:3504;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8468266 | 8468382 | 8468266 | ID=Msa0796410-mRNA-1:exon:3503;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8469028 | 8469138 | 8469028 | ID=Msa0796410-mRNA-1:exon:3502;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8469430 | 8469508 | 8469430 | ID=Msa0796410-mRNA-1:exon:3501;Parent=Msa0796410-mRNA-1 |
| chr5_3 | exon | 8469752 | 8469940 | 8469752 | ID=Msa0796410-mRNA-1:exon:3500;Parent=Msa0796410-mRNA-1 |
| chr5_3 | five_prime_UTR | 8469838 | 8469940 | 8469838 | ID=Msa0796410-mRNA-1:five_prime_utr;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8469752 | 8469837 | 8469752 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8469430 | 8469508 | 8469430 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8469028 | 8469138 | 8469028 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8468266 | 8468382 | 8468266 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8467480 | 8467830 | 8467480 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8466987 | 8467309 | 8466987 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8466458 | 8466557 | 8466458 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8466310 | 8466369 | 8466310 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8465805 | 8465891 | 8465805 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8465109 | 8465249 | 8465109 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | CDS | 8464561 | 8464881 | 8464561 | ID=Msa0796410-mRNA-1:cds;Parent=Msa0796410-mRNA-1 |
| chr5_3 | three_prime_UTR | 8464346 | 8464560 | 8464346 | ID=Msa0796410-mRNA-1:three_prime_utr;Parent=Msa0796410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
