Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135520 | AES77331.2 | 95.238 | 357 | 11 | 1 | 1 | 351 | 1 | 357 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135520 | sp|Q9LFP6|PIN8_ARATH | 55.464 | 366 | 145 | 6 | 1 | 349 | 1 | 365 | 6.67e-128 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135520 | Q5FV66 | 95.238 | 357 | 11 | 1 | 1 | 351 | 1 | 357 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0823400 | Msa1135520 | 0.807640 | 4.578700e-50 | -8.615850e-47 |
| Msa1100140 | Msa1135520 | 0.827524 | 1.491623e-54 | -8.615850e-47 |
| Msa1135520 | Msa1228190 | 0.807817 | 4.200592e-50 | -8.615850e-47 |
| Msa1135520 | Msa1271260 | 0.806165 | 9.391864e-50 | -8.615850e-47 |
| Msa1135520 | Msa1345420 | 0.800804 | 1.213567e-48 | -8.615850e-47 |
| Msa1135520 | Msa1462530 | 0.803663 | 3.131422e-49 | -8.615850e-47 |
| Msa0591800 | Msa1135520 | 0.800486 | 1.409158e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135520 | MtrunA17_Chr7g0216571 | 94.958 | 357 | 11 | 2 | 1 | 351 | 12 | 367 | 0.0 | 674 |
| Msa1135520 | MtrunA17_Chr6g0452821 | 70.360 | 361 | 96 | 4 | 1 | 351 | 1 | 360 | 0.0 | 507 |
| Msa1135520 | MtrunA17_Chr7g0249141 | 40.111 | 359 | 205 | 3 | 1 | 349 | 1 | 359 | 5.22e-92 | 279 |
| Msa1135520 | MtrunA17_Chr1g0160461 | 63.924 | 158 | 51 | 1 | 200 | 351 | 464 | 621 | 3.83e-60 | 204 |
| Msa1135520 | MtrunA17_Chr1g0160461 | 56.329 | 158 | 69 | 0 | 1 | 158 | 1 | 158 | 9.04e-54 | 186 |
| Msa1135520 | MtrunA17_Chr4g0044181 | 62.025 | 158 | 54 | 1 | 200 | 351 | 502 | 659 | 8.82e-59 | 201 |
| Msa1135520 | MtrunA17_Chr4g0044181 | 55.063 | 158 | 71 | 0 | 1 | 158 | 1 | 158 | 4.07e-52 | 182 |
| Msa1135520 | MtrunA17_Chr6g0478431 | 51.515 | 198 | 93 | 2 | 1 | 196 | 1 | 197 | 5.09e-57 | 195 |
| Msa1135520 | MtrunA17_Chr6g0478431 | 48.000 | 225 | 89 | 3 | 155 | 351 | 380 | 604 | 4.39e-56 | 192 |
| Msa1135520 | MtrunA17_Chr7g0255941 | 51.269 | 197 | 93 | 2 | 1 | 195 | 1 | 196 | 5.10e-57 | 194 |
| Msa1135520 | MtrunA17_Chr7g0255941 | 59.494 | 158 | 58 | 1 | 200 | 351 | 434 | 591 | 3.94e-55 | 189 |
| Msa1135520 | MtrunA17_Chr8g0393111 | 56.442 | 163 | 70 | 1 | 1 | 162 | 1 | 163 | 7.61e-57 | 193 |
| Msa1135520 | MtrunA17_Chr8g0393111 | 49.714 | 175 | 51 | 3 | 184 | 321 | 343 | 517 | 6.56e-42 | 153 |
| Msa1135520 | MtrunA17_Chr4g0071571 | 50.000 | 204 | 87 | 3 | 163 | 351 | 422 | 625 | 7.39e-55 | 189 |
| Msa1135520 | MtrunA17_Chr4g0071571 | 55.280 | 161 | 67 | 2 | 1 | 158 | 1 | 159 | 2.31e-49 | 174 |
| Msa1135520 | MtrunA17_Chr4g0071551 | 47.596 | 208 | 95 | 5 | 1 | 197 | 1 | 205 | 2.39e-53 | 175 |
| Msa1135520 | MtrunA17_Chr1g0159341 | 53.797 | 158 | 73 | 0 | 1 | 158 | 1 | 158 | 2.66e-48 | 170 |
| Msa1135520 | MtrunA17_Chr1g0159341 | 53.797 | 158 | 67 | 1 | 200 | 351 | 370 | 527 | 2.06e-47 | 167 |
| Msa1135520 | MtrunA17_Chr4g0071561 | 52.632 | 171 | 67 | 3 | 171 | 327 | 146 | 316 | 2.10e-47 | 163 |
| Msa1135520 | MtrunA17_Chr2g0298971 | 46.237 | 186 | 99 | 1 | 1 | 186 | 1 | 185 | 1.19e-46 | 166 |
| Msa1135520 | MtrunA17_Chr2g0298971 | 35.361 | 263 | 109 | 8 | 119 | 330 | 265 | 517 | 1.23e-35 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1135520 | AT5G15100.1 | 55.464 | 366 | 145 | 6 | 1 | 349 | 1 | 365 | 6.78e-129 | 374 |
| Msa1135520 | AT5G16530.1 | 41.761 | 352 | 191 | 5 | 1 | 346 | 1 | 344 | 1.94e-90 | 275 |
| Msa1135520 | AT5G16530.2 | 41.369 | 336 | 183 | 5 | 1 | 330 | 1 | 328 | 2.22e-83 | 256 |
| Msa1135520 | AT1G73590.1 | 51.515 | 198 | 93 | 2 | 1 | 196 | 1 | 197 | 2.58e-56 | 194 |
| Msa1135520 | AT1G73590.1 | 60.127 | 158 | 57 | 1 | 200 | 351 | 465 | 622 | 8.70e-52 | 181 |
| Msa1135520 | AT2G01420.1 | 59.494 | 158 | 58 | 1 | 200 | 351 | 455 | 612 | 3.41e-56 | 193 |
| Msa1135520 | AT2G01420.1 | 48.058 | 206 | 96 | 3 | 1 | 197 | 1 | 204 | 4.08e-52 | 182 |
| Msa1135520 | AT2G01420.2 | 59.494 | 158 | 58 | 1 | 200 | 351 | 459 | 616 | 3.67e-56 | 193 |
| Msa1135520 | AT2G01420.2 | 48.058 | 206 | 96 | 3 | 1 | 197 | 1 | 204 | 4.02e-52 | 182 |
| Msa1135520 | AT5G57090.2 | 51.000 | 200 | 83 | 3 | 166 | 351 | 349 | 547 | 1.41e-55 | 190 |
| Msa1135520 | AT5G57090.2 | 64.516 | 62 | 22 | 0 | 101 | 162 | 1 | 62 | 7.46e-17 | 82.0 |
| Msa1135520 | AT5G57090.1 | 51.000 | 200 | 83 | 3 | 166 | 351 | 449 | 647 | 5.37e-55 | 191 |
| Msa1135520 | AT5G57090.1 | 48.515 | 202 | 91 | 2 | 1 | 195 | 1 | 196 | 6.97e-52 | 182 |
| Msa1135520 | AT1G23080.3 | 60.127 | 158 | 57 | 1 | 200 | 351 | 458 | 615 | 4.54e-53 | 185 |
| Msa1135520 | AT1G23080.3 | 56.962 | 158 | 68 | 0 | 1 | 158 | 1 | 158 | 1.73e-52 | 183 |
| Msa1135520 | AT1G23080.4 | 60.127 | 158 | 57 | 1 | 200 | 351 | 458 | 615 | 4.54e-53 | 185 |
| Msa1135520 | AT1G23080.4 | 56.962 | 158 | 68 | 0 | 1 | 158 | 1 | 158 | 1.73e-52 | 183 |
| Msa1135520 | AT1G23080.2 | 56.962 | 158 | 68 | 0 | 1 | 158 | 1 | 158 | 4.66e-53 | 183 |
| Msa1135520 | AT1G23080.2 | 57.627 | 59 | 19 | 1 | 200 | 252 | 458 | 516 | 2.59e-13 | 71.2 |
| Msa1135520 | AT1G23080.1 | 60.127 | 158 | 57 | 1 | 200 | 351 | 462 | 619 | 4.86e-53 | 185 |
| Msa1135520 | AT1G23080.1 | 56.962 | 158 | 68 | 0 | 1 | 158 | 1 | 158 | 1.65e-52 | 183 |
| Msa1135520 | AT1G70940.1 | 51.961 | 204 | 85 | 4 | 157 | 351 | 441 | 640 | 1.32e-52 | 184 |
| Msa1135520 | AT1G70940.1 | 56.962 | 158 | 68 | 0 | 1 | 158 | 1 | 158 | 2.27e-52 | 183 |
| Msa1135520 | AT2G01420.3 | 55.696 | 158 | 70 | 0 | 1 | 158 | 1 | 158 | 1.63e-52 | 181 |
| Msa1135520 | AT2G01420.3 | 55.932 | 59 | 20 | 1 | 200 | 252 | 459 | 517 | 2.98e-13 | 71.2 |
| Msa1135520 | AT1G77110.1 | 44.712 | 208 | 99 | 4 | 158 | 351 | 365 | 570 | 1.08e-51 | 180 |
| Msa1135520 | AT1G77110.1 | 45.411 | 207 | 103 | 3 | 1 | 197 | 1 | 207 | 8.23e-49 | 172 |
| Msa1135520 | AT1G77110.2 | 45.411 | 207 | 103 | 3 | 1 | 197 | 1 | 207 | 7.99e-49 | 172 |
| Msa1135520 | AT1G77110.2 | 45.405 | 185 | 87 | 3 | 158 | 329 | 365 | 548 | 7.10e-45 | 162 |
Find 72 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTAATACTTTGATTCT+TGG | 0.167604 | 7_4:-3175370 | Msa1135520:CDS |
| TAATTTATCAGGTCTGTTTA+TGG | 0.187634 | 7_4:-3173865 | Msa1135520:intron |
| ATAGTATATTGATTGATTTA+TGG | 0.209411 | 7_4:-3172664 | Msa1135520:three_prime_UTR |
| AGTATCATTGTTACATATAA+TGG | 0.218778 | 7_4:+3175652 | None:intergenic |
| AATCAGCATACATGAGTTTA+AGG | 0.223359 | 7_4:+3175494 | None:intergenic |
| AACACATTTGCTTCATTAAT+AGG | 0.236738 | 7_4:-3174454 | Msa1135520:CDS |
| CATTGCCTTGCCCGTGGAAT+TGG | 0.267068 | 7_4:-3172802 | Msa1135520:CDS |
| ATTCCAAGAATCAAAGTATT+AGG | 0.293610 | 7_4:+3175367 | None:intergenic |
| CTTGTTAATAGGATCTTGTT+AGG | 0.307687 | 7_4:-3172831 | Msa1135520:intron |
| ATTGAATGATTGATTACTTC+AGG | 0.318426 | 7_4:+3174125 | None:intergenic |
| ACTGCAATTATTAAGATTAG+TGG | 0.327487 | 7_4:-3175439 | Msa1135520:CDS |
| ATTAATGAAGCAAATGTGTT+TGG | 0.329402 | 7_4:+3174457 | None:intergenic |
| AAAGAAAACACTAATTTATA+AGG | 0.344667 | 7_4:+3172623 | None:intergenic |
| GGTTTGAAATGGATTATAAC+TGG | 0.347389 | 7_4:-3175409 | Msa1135520:CDS |
| CTTCATTAATAGGCATCATT+TGG | 0.353483 | 7_4:-3174444 | Msa1135520:intron |
| GTTTAAAGTTGCAATAGTTC+AGG | 0.371056 | 7_4:-3173718 | Msa1135520:intron |
| CACAGCAACACTAATTTGTA+AGG | 0.377236 | 7_4:+3172592 | None:intergenic |
| GTGGTAAAGGTGGTTTGAAA+TGG | 0.378352 | 7_4:-3175420 | Msa1135520:CDS |
| ATTGTTAAAAGCAATGTATA+AGG | 0.393383 | 7_4:-3175341 | Msa1135520:CDS |
| AGGACCTGCTCTAATGGCTT+TGG | 0.407779 | 7_4:-3173772 | Msa1135520:CDS |
| GTATCATTGTTACATATAAT+GGG | 0.421983 | 7_4:+3175653 | None:intergenic |
| GCTTTGGCATCCATTGTCAT+TGG | 0.422465 | 7_4:-3173756 | Msa1135520:CDS |
| GTTGGTAGGACCTGCTCTAA+TGG | 0.425327 | 7_4:-3173778 | Msa1135520:CDS |
| TTCCCCACTGTGACAAGAAT+GGG | 0.427784 | 7_4:+3174496 | None:intergenic |
| CTATTGTCCAATGGAGGTCT+TGG | 0.428281 | 7_4:-3174098 | Msa1135520:CDS |
| GAACCATTTCACTGAGACAT+AGG | 0.430638 | 7_4:+3175627 | None:intergenic |
| TTCACACAAGAACAATGTTC+AGG | 0.435017 | 7_4:-3175598 | Msa1135520:CDS |
| ATTGCAACCATTGTATTCCT+TGG | 0.437294 | 7_4:+3173813 | None:intergenic |
| CTTCCCCACTGTGACAAGAA+TGG | 0.439357 | 7_4:+3174495 | None:intergenic |
| AGGAATACAATGGTTGCAAT+TGG | 0.442619 | 7_4:-3173810 | Msa1135520:CDS |
| TTTGTACCTGTGTCTTGTGA+TGG | 0.450346 | 7_4:+3175205 | None:intergenic |
| TAGCCTATGTCTCAGTGAAA+TGG | 0.450425 | 7_4:-3175630 | Msa1135520:CDS |
| AGGTGCAGATAGCATGTTCT+TGG | 0.455822 | 7_4:+3175228 | None:intergenic |
| TACTTACGCAGTGCTTAAGA+TGG | 0.479644 | 7_4:+3172933 | None:intergenic |
| ATTATTAAGATTAGTGGTAA+AGG | 0.481820 | 7_4:-3175433 | Msa1135520:CDS |
| CAACTCTTCAAATTGCTAAG+AGG | 0.482620 | 7_4:+3172769 | None:intergenic |
| GGTATGGCAATGTTCAGCTT+AGG | 0.482963 | 7_4:-3174077 | Msa1135520:intron |
| TATAAGTGAAGTTATTATTG+TGG | 0.491680 | 7_4:-3172565 | None:intergenic |
| ATGACTTGAAATGATAAAAG+AGG | 0.503088 | 7_4:+3175544 | None:intergenic |
| TTTCCCATTCTTGTCACAGT+GGG | 0.513118 | 7_4:-3174499 | Msa1135520:CDS |
| TACATGATAAACATTGGCTA+AGG | 0.518936 | 7_4:+3175690 | None:intergenic |
| TGCCATACCAAGACCTCCAT+TGG | 0.522836 | 7_4:+3174091 | None:intergenic |
| ATTAAGATTAGTGGTAAAGG+TGG | 0.526090 | 7_4:-3175430 | Msa1135520:CDS |
| TGTTATTACATGATAAACAT+TGG | 0.540122 | 7_4:+3175684 | None:intergenic |
| TGACTTGAAATGATAAAAGA+GGG | 0.540501 | 7_4:+3175545 | None:intergenic |
| GAAAGCCAATTCCACGGGCA+AGG | 0.545629 | 7_4:+3172797 | None:intergenic |
| TACGCAGTGCTTAAGATGGA+TGG | 0.549725 | 7_4:+3172937 | None:intergenic |
| GAAGAAGATGAAGAACCTGT+TGG | 0.556300 | 7_4:-3174544 | Msa1135520:CDS |
| GTACCTGTGTCTTGTGATGG+AGG | 0.560547 | 7_4:+3175208 | None:intergenic |
| GCATCATAGCATGTGGGCCA+AGG | 0.564036 | 7_4:-3173830 | Msa1135520:CDS |
| GTCCAATGGAGGTCTTGGTA+TGG | 0.572996 | 7_4:-3174093 | Msa1135520:CDS |
| TTGTGTTAAATATATATGCT+AGG | 0.582650 | 7_4:-3172749 | Msa1135520:three_prime_UTR |
| GATGCCAAAGCCATTAGAGC+AGG | 0.586131 | 7_4:+3173768 | None:intergenic |
| ATGTTTACTTGAAGGAGAGT+CGG | 0.589183 | 7_4:-3174596 | Msa1135520:intron |
| CAGTCAAGCATCATAGCATG+TGG | 0.594053 | 7_4:-3173837 | Msa1135520:CDS |
| AAGTAGAAAGCCAATTCCAC+GGG | 0.597811 | 7_4:+3172792 | None:intergenic |
| TCAATAGAACTATTGTCCAA+TGG | 0.602732 | 7_4:-3174107 | Msa1135520:CDS |
| CTTTCCCATTCTTGTCACAG+TGG | 0.614609 | 7_4:-3174500 | Msa1135520:CDS |
| AATGCTCATTGCCTTGCCCG+TGG | 0.622624 | 7_4:-3172808 | Msa1135520:CDS |
| GAAGTAGAAAGCCAATTCCA+CGG | 0.623646 | 7_4:+3172791 | None:intergenic |
| GTTTCTTAAACCAATGACAA+TGG | 0.631743 | 7_4:+3173746 | None:intergenic |
| CAGTGCTTAAGATGGATGGA+TGG | 0.644221 | 7_4:+3172941 | None:intergenic |
| TGCAATTGGACTGAAAGTGT+TGG | 0.649176 | 7_4:-3173796 | Msa1135520:CDS |
| ATAGAACTATTGTCCAATGG+AGG | 0.658101 | 7_4:-3174104 | Msa1135520:CDS |
| ATGTGGGCCAAGGAATACAA+TGG | 0.670600 | 7_4:-3173820 | Msa1135520:CDS |
| TGGCAGGCAGCTCTACCACA+AGG | 0.672085 | 7_4:-3173000 | Msa1135520:intron |
| ACAGCAACACTAATTTGTAA+GGG | 0.672598 | 7_4:+3172593 | None:intergenic |
| TTCCCATTCTTGTCACAGTG+GGG | 0.685363 | 7_4:-3174498 | Msa1135520:CDS |
| AGTCAAGCATCATAGCATGT+GGG | 0.689134 | 7_4:-3173836 | Msa1135520:CDS |
| GCACCTCCATCACAAGACAC+AGG | 0.697743 | 7_4:-3175211 | Msa1135520:intron |
| ACAAAAGGAACTATTCCTTG+TGG | 0.703807 | 7_4:+3172985 | None:intergenic |
| ATTGGACTGAAAGTGTTGGT+AGG | 0.716420 | 7_4:-3173792 | Msa1135520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATAATTTATAACA+AGG | + | chr7_4:3174246-3174265 | None:intergenic | 10.0% |
| !!! | ATTGATATTTTTCAATTTAA+AGG | + | chr7_4:3174738-3174757 | None:intergenic | 10.0% |
| !! | ATATCATGTATTAATATTTA+GGG | + | chr7_4:3175237-3175256 | None:intergenic | 10.0% |
| !! | AATATCATGTATTAATATTT+AGG | + | chr7_4:3175238-3175257 | None:intergenic | 10.0% |
| !!! | TCACTTTTTTTTTTTATCAA+TGG | - | chr7_4:3173313-3173332 | Msa1135520:intron | 15.0% |
| !! | ATTTAAAAGATATACAATGT+GGG | - | chr7_4:3174269-3174288 | Msa1135520:intron | 15.0% |
| !! | AAACTACTAAATATTATTCA+TGG | - | chr7_4:3174633-3174652 | Msa1135520:intron | 15.0% |
| !!! | ATCAAACTTTATTTACTTTT+CGG | - | chr7_4:3174981-3175000 | Msa1135520:intron | 15.0% |
| !!! | ATAGTATATTGATTGATTTA+TGG | - | chr7_4:3175600-3175619 | Msa1135520:CDS | 15.0% |
| !! | AAAGAAAACACTAATTTATA+AGG | + | chr7_4:3175644-3175663 | None:intergenic | 15.0% |
| !! | TGTTATTACATGATAAACAT+TGG | + | chr7_4:3172583-3172602 | None:intergenic | 20.0% |
| !! | GTATCATTGTTACATATAAT+GGG | + | chr7_4:3172614-3172633 | None:intergenic | 20.0% |
| !! | AGTATCATTGTTACATATAA+TGG | + | chr7_4:3172615-3172634 | None:intergenic | 20.0% |
| !! | ATTATTAAGATTAGTGGTAA+AGG | - | chr7_4:3172831-3172850 | Msa1135520:intron | 20.0% |
| !!! | TTATACATTGCTTTTAACAA+TGG | + | chr7_4:3172924-3172943 | None:intergenic | 20.0% |
| !! | ATTGTTAAAAGCAATGTATA+AGG | - | chr7_4:3172923-3172942 | Msa1135520:intron | 20.0% |
| !! | ATCTTATCTTACAATGTATA+AGG | - | chr7_4:3173104-3173123 | Msa1135520:intron | 20.0% |
| !!! | AAGGATTTTGATTAGTAAAA+AGG | - | chr7_4:3173123-3173142 | Msa1135520:intron | 20.0% |
| !! | AAAACACAAACAAAAAATAC+AGG | + | chr7_4:3173211-3173230 | None:intergenic | 20.0% |
| !! | CACTATTAAAATATATGTTC+TGG | + | chr7_4:3173460-3173479 | None:intergenic | 20.0% |
| !!! | CAGAACATATATTTTAATAG+TGG | - | chr7_4:3173458-3173477 | Msa1135520:intron | 20.0% |
| !!! | AACATATATTTTAATAGTGG+TGG | - | chr7_4:3173461-3173480 | Msa1135520:intron | 20.0% |
| !!! | CTTATCATAGTTTTAAATTG+TGG | - | chr7_4:3173511-3173530 | Msa1135520:intron | 20.0% |
| !! | GTGTATAGTGTATAAAAAAA+AGG | + | chr7_4:3173904-3173923 | None:intergenic | 20.0% |
| !! | TATATAATTTCCTTATCACA+AGG | - | chr7_4:3174052-3174071 | Msa1135520:intron | 20.0% |
| !! | TATAACAAGGAAGAAAAATA+TGG | + | chr7_4:3174233-3174252 | None:intergenic | 20.0% |
| !! | GATTTAAAAGATATACAATG+TGG | - | chr7_4:3174268-3174287 | Msa1135520:intron | 20.0% |
| !! | AATCTATCTTTACAATTTCA+AGG | + | chr7_4:3174678-3174697 | None:intergenic | 20.0% |
| !!! | TTGTTATTTTGCAAATTTGA+AGG | - | chr7_4:3174774-3174793 | Msa1135520:intron | 20.0% |
| !! | GATAAACTTATACAATTTCA+AGG | - | chr7_4:3174805-3174824 | Msa1135520:intron | 20.0% |
| !!! | ATCGATAATTATTTTAGTCA+AGG | + | chr7_4:3174932-3174951 | None:intergenic | 20.0% |
| !! | AGACATAGATTATAGTAATT+TGG | + | chr7_4:3175014-3175033 | None:intergenic | 20.0% |
| !! | TTCACTATACTTATATAATG+TGG | - | chr7_4:3175155-3175174 | Msa1135520:intron | 20.0% |
| !! | TATTCTTTAGCAAAAACAAA+AGG | + | chr7_4:3175297-3175316 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTTTCTTGTTAAT+AGG | - | chr7_4:3175422-3175441 | Msa1135520:CDS | 20.0% |
| !! | TTGTGTTAAATATATATGCT+AGG | - | chr7_4:3175515-3175534 | Msa1135520:CDS | 20.0% |
| !!! | TAAATTAGTGTTTTCTTTAG+AGG | - | chr7_4:3175646-3175665 | Msa1135520:CDS | 20.0% |
| ! | TGACTTGAAATGATAAAAGA+GGG | + | chr7_4:3172722-3172741 | None:intergenic | 25.0% |
| ! | ATGACTTGAAATGATAAAAG+AGG | + | chr7_4:3172723-3172742 | None:intergenic | 25.0% |
| ! | ACTGCAATTATTAAGATTAG+TGG | - | chr7_4:3172825-3172844 | Msa1135520:intron | 25.0% |
| !! | ATTCCAAGAATCAAAGTATT+AGG | + | chr7_4:3172900-3172919 | None:intergenic | 25.0% |
| ! | ACATGTTTCAACTTAGTATT+TGG | + | chr7_4:3173283-3173302 | None:intergenic | 25.0% |
| ! | AGTACTATAAACAATCAATG+TGG | - | chr7_4:3173432-3173451 | Msa1135520:intron | 25.0% |
| ! | GTACTATAAACAATCAATGT+GGG | - | chr7_4:3173433-3173452 | Msa1135520:intron | 25.0% |
| !!! | ATATTTTAATAGTGGTGGAA+AGG | - | chr7_4:3173466-3173485 | Msa1135520:intron | 25.0% |
| !!! | TATTTTAATAGTGGTGGAAA+GGG | - | chr7_4:3173467-3173486 | Msa1135520:intron | 25.0% |
| ! | ATTAATGAAGCAAATGTGTT+TGG | + | chr7_4:3173810-3173829 | None:intergenic | 25.0% |
| ! | AACACATTTGCTTCATTAAT+AGG | - | chr7_4:3173810-3173829 | Msa1135520:CDS | 25.0% |
| ! | TAAGGCTATAAATAACAACT+AGG | - | chr7_4:3174085-3174104 | Msa1135520:CDS | 25.0% |
| !! | AACTAGGTATACATATTTTC+AGG | - | chr7_4:3174101-3174120 | Msa1135520:CDS | 25.0% |
| ! | ATTGAATGATTGATTACTTC+AGG | + | chr7_4:3174142-3174161 | None:intergenic | 25.0% |
| !!! | ATTTTTAGAGTTGCAGTAAA+AGG | - | chr7_4:3174349-3174368 | Msa1135520:intron | 25.0% |
| !! | TCTTTTTGTGTGTTTATTGA+TGG | - | chr7_4:3174372-3174391 | Msa1135520:intron | 25.0% |
| !! | TTGATGGATGTTAATTTATC+AGG | - | chr7_4:3174388-3174407 | Msa1135520:intron | 25.0% |
| ! | TAATTTATCAGGTCTGTTTA+TGG | - | chr7_4:3174399-3174418 | Msa1135520:intron | 25.0% |
| !!! | TTGCTGTTTCTCAAATTTAA+AGG | + | chr7_4:3174709-3174728 | None:intergenic | 25.0% |
| ! | TGAAAAATATCAATCAGTCT+AGG | - | chr7_4:3174744-3174763 | Msa1135520:intron | 25.0% |
| ! | GAAAAATATCAATCAGTCTA+GGG | - | chr7_4:3174745-3174764 | Msa1135520:intron | 25.0% |
| ! | AATGAGTAAATACACACTTT+AGG | + | chr7_4:3174831-3174850 | None:intergenic | 25.0% |
| ! | GTGTATTTACTCATTACAAA+TGG | - | chr7_4:3174836-3174855 | Msa1135520:intron | 25.0% |
| ! | ATTTACTCATTACAAATGGT+TGG | - | chr7_4:3174840-3174859 | Msa1135520:intron | 25.0% |
| ! | GTTAAGTCAGATTTAGTTAA+AGG | - | chr7_4:3174877-3174896 | Msa1135520:intron | 25.0% |
| ! | TTAGTTAAAGGTGAATTGAT+TGG | - | chr7_4:3174889-3174908 | Msa1135520:intron | 25.0% |
| !!! | GTTTTAGTTCTCAATTTGTT+AGG | + | chr7_4:3175037-3175056 | None:intergenic | 25.0% |
| ! | ATTGTTGGATTAAGATCAAA+TGG | + | chr7_4:3175182-3175201 | None:intergenic | 25.0% |
| ! | ATCAATACATCAGAAATTGT+TGG | + | chr7_4:3175197-3175216 | None:intergenic | 25.0% |
| ! | TAATACATGATATTTGCATG+TGG | - | chr7_4:3175244-3175263 | Msa1135520:CDS | 25.0% |
| ! | TACATGATAAACATTGGCTA+AGG | + | chr7_4:3172577-3172596 | None:intergenic | 30.0% |
| ! | GCTCATTTTGTAGATATTGT+TGG | + | chr7_4:3172751-3172770 | None:intergenic | 30.0% |
| AATCAGCATACATGAGTTTA+AGG | + | chr7_4:3172773-3172792 | None:intergenic | 30.0% | |
| ATTAAGATTAGTGGTAAAGG+TGG | - | chr7_4:3172834-3172853 | Msa1135520:intron | 30.0% | |
| !! | GGTTTGAAATGGATTATAAC+TGG | - | chr7_4:3172855-3172874 | Msa1135520:intron | 30.0% |
| CTTCCTAATACTTTGATTCT+TGG | - | chr7_4:3172894-3172913 | Msa1135520:intron | 30.0% | |
| ! | TTTTCTTGCAGAGTATGATT+TGG | - | chr7_4:3172976-3172995 | Msa1135520:CDS | 30.0% |
| AAATACAGGAGACTTGATTA+CGG | + | chr7_4:3173197-3173216 | None:intergenic | 30.0% | |
| ACTTAGTATTTGGTATTCCT+CGG | + | chr7_4:3173273-3173292 | None:intergenic | 30.0% | |
| ! | TTATCAATGGCATTTGAGAT+TGG | - | chr7_4:3173326-3173345 | Msa1135520:intron | 30.0% |
| TTATATTGCAAGCACAATTG+CGG | + | chr7_4:3173544-3173563 | None:intergenic | 30.0% | |
| CAATTGTGCTTGCAATATAA+AGG | - | chr7_4:3173544-3173563 | Msa1135520:intron | 30.0% | |
| !! | ATGGTTCTAAATTGCATTTG+TGG | + | chr7_4:3173627-3173646 | None:intergenic | 30.0% |
| AGTTCCTAATGTTTACTTGA+AGG | - | chr7_4:3173660-3173679 | Msa1135520:intron | 30.0% | |
| !!! | ATTTTGCTTTTTGTTCCAAC+AGG | + | chr7_4:3173738-3173757 | None:intergenic | 30.0% |
| CTTCATTAATAGGCATCATT+TGG | - | chr7_4:3173820-3173839 | Msa1135520:CDS | 30.0% | |
| ATCTCTCACAAATATCTAGA+TGG | + | chr7_4:3173943-3173962 | None:intergenic | 30.0% | |
| ATTATGATCTCCTTGTGATA+AGG | + | chr7_4:3174065-3174084 | None:intergenic | 30.0% | |
| TCACAAGGAGATCATAATTA+AGG | - | chr7_4:3174067-3174086 | Msa1135520:intron | 30.0% | |
| !! | TAGGTATACATATTTTCAGG+TGG | - | chr7_4:3174104-3174123 | Msa1135520:CDS | 30.0% |
| !!! | AGGTATACATATTTTCAGGT+GGG | - | chr7_4:3174105-3174124 | Msa1135520:CDS | 30.0% |
| TCAATAGAACTATTGTCCAA+TGG | - | chr7_4:3174157-3174176 | Msa1135520:intron | 30.0% | |
| GTTTCTTAAACCAATGACAA+TGG | + | chr7_4:3174521-3174540 | None:intergenic | 30.0% | |
| ! | GTTTAAAGTTGCAATAGTTC+AGG | - | chr7_4:3174546-3174565 | Msa1135520:CDS | 30.0% |
| !! | ATTTACACGGTTGATAATCT+CGG | - | chr7_4:3175091-3175110 | Msa1135520:intron | 30.0% |
| ! | TTAATATTTAGGGCATCCAA+TGG | + | chr7_4:3175227-3175246 | None:intergenic | 30.0% |
| CTTGTTAATAGGATCTTGTT+AGG | - | chr7_4:3175433-3175452 | Msa1135520:CDS | 30.0% | |
| ! | ACAGCAACACTAATTTGTAA+GGG | + | chr7_4:3175674-3175693 | None:intergenic | 30.0% |
| TTCACACAAGAACAATGTTC+AGG | - | chr7_4:3172666-3172685 | Msa1135520:three_prime_UTR | 35.0% | |
| TACTTTCGAACCAAAGTGTA+TGG | - | chr7_4:3173242-3173261 | Msa1135520:intron | 35.0% | |
| ! | ATGGCATTTGAGATTGGATA+TGG | - | chr7_4:3173332-3173351 | Msa1135520:intron | 35.0% |
| CTCTCCTTCAAGTAAACATT+AGG | + | chr7_4:3173667-3173686 | None:intergenic | 35.0% | |
| ATGTTTACTTGAAGGAGAGT+CGG | - | chr7_4:3173668-3173687 | Msa1135520:intron | 35.0% | |
| TTTGGTCAAGCATACAATTC+AGG | - | chr7_4:3173838-3173857 | Msa1135520:CDS | 35.0% | |
| TCTAGATGGTGAGATCTAAT+TGG | + | chr7_4:3173929-3173948 | None:intergenic | 35.0% | |
| !!! | GGTATACATATTTTCAGGTG+GGG | - | chr7_4:3174106-3174125 | Msa1135520:CDS | 35.0% |
| !!! | GTATACATATTTTCAGGTGG+GGG | - | chr7_4:3174107-3174126 | Msa1135520:CDS | 35.0% |
| ATAGAACTATTGTCCAATGG+AGG | - | chr7_4:3174160-3174179 | Msa1135520:intron | 35.0% | |
| ATTGCAACCATTGTATTCCT+TGG | + | chr7_4:3174454-3174473 | None:intergenic | 35.0% | |
| AGGAATACAATGGTTGCAAT+TGG | - | chr7_4:3174454-3174473 | Msa1135520:CDS | 35.0% | |
| CATTCAGTCACACATTTACA+CGG | - | chr7_4:3175078-3175097 | Msa1135520:intron | 35.0% | |
| !! | TGTATTGATTGTGTGACCAT+TGG | - | chr7_4:3175208-3175227 | Msa1135520:intron | 35.0% |
| ACAAAAGGAACTATTCCTTG+TGG | + | chr7_4:3175282-3175301 | None:intergenic | 35.0% | |
| CAACTCTTCAAATTGCTAAG+AGG | + | chr7_4:3175498-3175517 | None:intergenic | 35.0% | |
| ! | CACAGCAACACTAATTTGTA+AGG | + | chr7_4:3175675-3175694 | None:intergenic | 35.0% |
| TAGCCTATGTCTCAGTGAAA+TGG | - | chr7_4:3172634-3172653 | Msa1135520:three_prime_UTR | 40.0% | |
| GAACCATTTCACTGAGACAT+AGG | + | chr7_4:3172640-3172659 | None:intergenic | 40.0% | |
| GTGGTAAAGGTGGTTTGAAA+TGG | - | chr7_4:3172844-3172863 | Msa1135520:intron | 40.0% | |
| TTTGTACCTGTGTCTTGTGA+TGG | + | chr7_4:3173062-3173081 | None:intergenic | 40.0% | |
| GCTGGATAAGTAGGCATAAT+TGG | - | chr7_4:3173164-3173183 | Msa1135520:intron | 40.0% | |
| ! | AATAGTGGTGGAAAGGGAAA+TGG | - | chr7_4:3173473-3173492 | Msa1135520:intron | 40.0% |
| GGAACTGAATGTAAGAAGCA+TGG | + | chr7_4:3173646-3173665 | None:intergenic | 40.0% | |
| GAAGAAGATGAAGAACCTGT+TGG | - | chr7_4:3173720-3173739 | Msa1135520:CDS | 40.0% | |
| TTTCCCATTCTTGTCACAGT+GGG | - | chr7_4:3173765-3173784 | Msa1135520:CDS | 40.0% | |
| AGTCAAGCATCATAGCATGT+GGG | - | chr7_4:3174428-3174447 | Msa1135520:intron | 40.0% | |
| ! | TGCAATTGGACTGAAAGTGT+TGG | - | chr7_4:3174468-3174487 | Msa1135520:CDS | 40.0% |
| !! | ATTGGACTGAAAGTGTTGGT+AGG | - | chr7_4:3174472-3174491 | Msa1135520:CDS | 40.0% |
| ACATGATATTTGCATGTGGC+AGG | - | chr7_4:3175248-3175267 | Msa1135520:CDS | 40.0% | |
| TACTTACGCAGTGCTTAAGA+TGG | + | chr7_4:3175334-3175353 | None:intergenic | 40.0% | |
| AAGTAGAAAGCCAATTCCAC+GGG | + | chr7_4:3175475-3175494 | None:intergenic | 40.0% | |
| GAAGTAGAAAGCCAATTCCA+CGG | + | chr7_4:3175476-3175495 | None:intergenic | 40.0% | |
| AGGTGCAGATAGCATGTTCT+TGG | + | chr7_4:3173039-3173058 | None:intergenic | 45.0% | |
| CTACTTATCCAGCAGTAGAG+CGG | + | chr7_4:3173157-3173176 | None:intergenic | 45.0% | |
| GGAGACTTGATTACGGAGTT+CGG | + | chr7_4:3173190-3173209 | None:intergenic | 45.0% | |
| CTCGGATAGACCATACACTT+TGG | + | chr7_4:3173255-3173274 | None:intergenic | 45.0% | |
| CAAAGTGTATGGTCTATCCG+AGG | - | chr7_4:3173253-3173272 | Msa1135520:intron | 45.0% | |
| GTGAGTTGTGACTGCAATTG+TGG | - | chr7_4:3173581-3173600 | Msa1135520:intron | 45.0% | |
| CTTTCCCATTCTTGTCACAG+TGG | - | chr7_4:3173764-3173783 | Msa1135520:CDS | 45.0% | |
| TTCCCATTCTTGTCACAGTG+GGG | - | chr7_4:3173766-3173785 | Msa1135520:CDS | 45.0% | |
| TTCCCCACTGTGACAAGAAT+GGG | + | chr7_4:3173771-3173790 | None:intergenic | 45.0% | |
| ACCAACGCTATCGTGTGTAA+AGG | + | chr7_4:3173877-3173896 | None:intergenic | 45.0% | |
| CTATTGTCCAATGGAGGTCT+TGG | - | chr7_4:3174166-3174185 | Msa1135520:intron | 45.0% | |
| GGTATGGCAATGTTCAGCTT+AGG | - | chr7_4:3174187-3174206 | Msa1135520:intron | 45.0% | |
| CAGTCAAGCATCATAGCATG+TGG | - | chr7_4:3174427-3174446 | Msa1135520:intron | 45.0% | |
| ATGTGGGCCAAGGAATACAA+TGG | - | chr7_4:3174444-3174463 | Msa1135520:intron | 45.0% | |
| GCTTTGGCATCCATTGTCAT+TGG | - | chr7_4:3174508-3174527 | Msa1135520:CDS | 45.0% | |
| CAGTGCTTAAGATGGATGGA+TGG | + | chr7_4:3175326-3175345 | None:intergenic | 45.0% | |
| TACGCAGTGCTTAAGATGGA+TGG | + | chr7_4:3175330-3175349 | None:intergenic | 45.0% | |
| GTACCTGTGTCTTGTGATGG+AGG | + | chr7_4:3173059-3173078 | None:intergenic | 50.0% | |
| TATTGCATCCGCTCTACTGC+TGG | - | chr7_4:3173146-3173165 | Msa1135520:intron | 50.0% | |
| CGCTCTACTGCTGGATAAGT+AGG | - | chr7_4:3173155-3173174 | Msa1135520:intron | 50.0% | |
| CTTCCCCACTGTGACAAGAA+TGG | + | chr7_4:3173772-3173791 | None:intergenic | 50.0% | |
| GCCTTTACACACGATAGCGT+TGG | - | chr7_4:3173873-3173892 | Msa1135520:intron | 50.0% | |
| GTCCAATGGAGGTCTTGGTA+TGG | - | chr7_4:3174171-3174190 | Msa1135520:intron | 50.0% | |
| TGCCATACCAAGACCTCCAT+TGG | + | chr7_4:3174176-3174195 | None:intergenic | 50.0% | |
| ! | GTTGGTAGGACCTGCTCTAA+TGG | - | chr7_4:3174486-3174505 | Msa1135520:CDS | 50.0% |
| AGGACCTGCTCTAATGGCTT+TGG | - | chr7_4:3174492-3174511 | Msa1135520:CDS | 50.0% | |
| GATGCCAAAGCCATTAGAGC+AGG | + | chr7_4:3174499-3174518 | None:intergenic | 50.0% | |
| GCACCTCCATCACAAGACAC+AGG | - | chr7_4:3173053-3173072 | Msa1135520:intron | 55.0% | |
| GCATCATAGCATGTGGGCCA+AGG | - | chr7_4:3174434-3174453 | Msa1135520:intron | 55.0% | |
| AATGCTCATTGCCTTGCCCG+TGG | - | chr7_4:3175456-3175475 | Msa1135520:CDS | 55.0% | |
| CATTGCCTTGCCCGTGGAAT+TGG | - | chr7_4:3175462-3175481 | Msa1135520:CDS | 55.0% | |
| GAAAGCCAATTCCACGGGCA+AGG | + | chr7_4:3175470-3175489 | None:intergenic | 55.0% | |
| TGGCAGGCAGCTCTACCACA+AGG | - | chr7_4:3175264-3175283 | Msa1135520:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 3172567 | 3175719 | 3172567 | ID=Msa1135520;Name=Msa1135520 |
| chr7_4 | mRNA | 3172567 | 3175719 | 3172567 | ID=Msa1135520-mRNA-1;Parent=Msa1135520;Name=Msa1135520-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.66|1|1|1|6|209|351 |
| chr7_4 | exon | 3172567 | 3172842 | 3172567 | ID=Msa1135520-mRNA-1:exon:884;Parent=Msa1135520-mRNA-1 |
| chr7_4 | exon | 3172940 | 3173016 | 3172940 | ID=Msa1135520-mRNA-1:exon:883;Parent=Msa1135520-mRNA-1 |
| chr7_4 | exon | 3173719 | 3173876 | 3173719 | ID=Msa1135520-mRNA-1:exon:882;Parent=Msa1135520-mRNA-1 |
| chr7_4 | exon | 3174078 | 3174163 | 3174078 | ID=Msa1135520-mRNA-1:exon:881;Parent=Msa1135520-mRNA-1 |
| chr7_4 | exon | 3174445 | 3174604 | 3174445 | ID=Msa1135520-mRNA-1:exon:880;Parent=Msa1135520-mRNA-1 |
| chr7_4 | exon | 3175212 | 3175719 | 3175212 | ID=Msa1135520-mRNA-1:exon:879;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3175212 | 3175719 | 3175212 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3174445 | 3174604 | 3174445 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3174078 | 3174163 | 3174078 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3173719 | 3173876 | 3173719 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3172940 | 3173016 | 3172940 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | CDS | 3172776 | 3172842 | 3172776 | ID=Msa1135520-mRNA-1:cds;Parent=Msa1135520-mRNA-1 |
| chr7_4 | three_prime_UTR | 3172567 | 3172775 | 3172567 | ID=Msa1135520-mRNA-1:three_prime_utr;Parent=Msa1135520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
