Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823400 | XP_003617487.2 | 100.000 | 83 | 0 | 0 | 109 | 191 | 303 | 385 | 1.38e-48 | 172 |
| Msa0823400 | XP_003617487.2 | 94.737 | 114 | 6 | 0 | 1 | 114 | 1 | 114 | 8.14e-72 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823400 | sp|Q1PDV6|PBL27_ARATH | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.44e-20 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823400 | I3T2D5 | 100.000 | 83 | 0 | 0 | 109 | 191 | 319 | 401 | 5.92e-49 | 173 |
| Msa0823400 | I3T2D5 | 94.495 | 109 | 6 | 0 | 6 | 114 | 22 | 130 | 2.38e-66 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0823400 | 0.827387 | 1.609131e-54 | -8.615850e-47 |
| Msa0015710 | Msa0823400 | 0.813917 | 2.008137e-51 | -8.615850e-47 |
| Msa0016120 | Msa0823400 | 0.805548 | 1.265888e-49 | -8.615850e-47 |
| Msa0017510 | Msa0823400 | 0.800490 | 1.406254e-48 | -8.615850e-47 |
| Msa0022640 | Msa0823400 | 0.805952 | 1.040922e-49 | -8.615850e-47 |
| Msa0036430 | Msa0823400 | 0.831163 | 1.950324e-55 | -8.615850e-47 |
| Msa0050040 | Msa0823400 | 0.836669 | 8.171927e-57 | -8.615850e-47 |
| Msa0055450 | Msa0823400 | 0.802452 | 5.572333e-49 | -8.615850e-47 |
| Msa0084500 | Msa0823400 | 0.857778 | 1.294798e-62 | -8.615850e-47 |
| Msa0098440 | Msa0823400 | 0.814918 | 1.206038e-51 | -8.615850e-47 |
| Msa0102990 | Msa0823400 | 0.837719 | 4.404153e-57 | -8.615850e-47 |
| Msa0104500 | Msa0823400 | 0.809346 | 1.980623e-50 | -8.615850e-47 |
| Msa0106790 | Msa0823400 | 0.822287 | 2.567423e-53 | -8.615850e-47 |
| Msa0109880 | Msa0823400 | 0.805784 | 1.129597e-49 | -8.615850e-47 |
| Msa0118400 | Msa0823400 | 0.832764 | 7.849150e-56 | -8.615850e-47 |
| Msa0625890 | Msa0823400 | 0.801535 | 8.601491e-49 | -8.615850e-47 |
| Msa0641360 | Msa0823400 | 0.805443 | 1.331391e-49 | -8.615850e-47 |
| Msa0663680 | Msa0823400 | 0.802868 | 4.573753e-49 | -8.615850e-47 |
| Msa0667850 | Msa0823400 | 0.818893 | 1.545587e-52 | -8.615850e-47 |
| Msa0669840 | Msa0823400 | 0.856678 | 2.735018e-62 | -8.615850e-47 |
| Msa0685330 | Msa0823400 | 0.843653 | 1.227743e-58 | -8.615850e-47 |
| Msa0707220 | Msa0823400 | 0.827170 | 1.813297e-54 | -8.615850e-47 |
| Msa0709450 | Msa0823400 | 0.805273 | 1.445574e-49 | -8.615850e-47 |
| Msa0725860 | Msa0823400 | 0.821897 | 3.162312e-53 | -8.615850e-47 |
| Msa0739580 | Msa0823400 | 0.806298 | 8.806249e-50 | -8.615850e-47 |
| Msa0742180 | Msa0823400 | 0.921938 | 1.878375e-88 | -8.615850e-47 |
| Msa0764820 | Msa0823400 | 0.807143 | 5.836041e-50 | -8.615850e-47 |
| Msa0770290 | Msa0823400 | 0.806251 | 9.009221e-50 | -8.615850e-47 |
| Msa0786040 | Msa0823400 | 0.866938 | 1.977263e-65 | -8.615850e-47 |
| Msa0819900 | Msa0823400 | 0.831466 | 1.642690e-55 | -8.615850e-47 |
| Msa0823400 | Msa0840500 | 0.801501 | 8.738710e-49 | -8.615850e-47 |
| Msa0823400 | Msa0860170 | 0.847498 | 1.113417e-59 | -8.615850e-47 |
| Msa0823400 | Msa0860280 | 0.801096 | 1.057636e-48 | -8.615850e-47 |
| Msa0823400 | Msa0862310 | 0.864958 | 8.357163e-65 | -8.615850e-47 |
| Msa0823400 | Msa0867350 | 0.844191 | 8.809860e-59 | -8.615850e-47 |
| Msa0823400 | Msa0880140 | 0.802781 | 4.766142e-49 | -8.615850e-47 |
| Msa0823400 | Msa0880710 | 0.801940 | 7.102360e-49 | -8.615850e-47 |
| Msa0823400 | Msa0885060 | 0.874381 | 7.058598e-68 | -8.615850e-47 |
| Msa0823400 | Msa0896350 | 0.833692 | 4.607277e-56 | -8.615850e-47 |
| Msa0823400 | Msa0898730 | 0.852026 | 6.048443e-61 | -8.615850e-47 |
| Msa0823400 | Msa0899950 | 0.807076 | 6.030550e-50 | -8.615850e-47 |
| Msa0823400 | Msa0922750 | 0.853465 | 2.346882e-61 | -8.615850e-47 |
| Msa0823400 | Msa0927120 | 0.807662 | 4.530597e-50 | -8.615850e-47 |
| Msa0823400 | Msa0929870 | 0.859406 | 4.229802e-63 | -8.615850e-47 |
| Msa0823400 | Msa0936410 | 0.843084 | 1.741766e-58 | -8.615850e-47 |
| Msa0823400 | Msa0941820 | 0.823554 | 1.301291e-53 | -8.615850e-47 |
| Msa0823400 | Msa0946210 | 0.809082 | 2.255204e-50 | -8.615850e-47 |
| Msa0823400 | Msa0961560 | 0.882257 | 1.212652e-70 | -8.615850e-47 |
| Msa0823400 | Msa0965310 | 0.822950 | 1.800141e-53 | -8.615850e-47 |
| Msa0823400 | Msa0973250 | 0.816660 | 4.931448e-52 | -8.615850e-47 |
| Msa0823400 | Msa0979510 | 0.838965 | 2.101227e-57 | -8.615850e-47 |
| Msa0823400 | Msa0996270 | 0.889569 | 2.153230e-73 | -8.615850e-47 |
| Msa0823400 | Msa0999300 | 0.840317 | 9.354287e-58 | -8.615850e-47 |
| Msa0823400 | Msa0999320 | 0.801951 | 7.066828e-49 | -8.615850e-47 |
| Msa0823400 | Msa0999340 | 0.842527 | 2.449004e-58 | -8.615850e-47 |
| Msa0823400 | Msa0999350 | 0.840856 | 6.755951e-58 | -8.615850e-47 |
| Msa0823400 | Msa0999360 | 0.819113 | 1.377066e-52 | -8.615850e-47 |
| Msa0823400 | Msa0999390 | 0.822350 | 2.483131e-53 | -8.615850e-47 |
| Msa0823400 | Msa0999400 | 0.830688 | 2.550712e-55 | -8.615850e-47 |
| Msa0823400 | Msa0999410 | 0.811238 | 7.735882e-51 | -8.615850e-47 |
| Msa0823400 | Msa0999700 | 0.806313 | 8.741457e-50 | -8.615850e-47 |
| Msa0823400 | Msa1001870 | 0.802584 | 5.235068e-49 | -8.615850e-47 |
| Msa0823400 | Msa1001890 | 0.845143 | 4.880384e-59 | -8.615850e-47 |
| Msa0823400 | Msa1007870 | 0.813648 | 2.301080e-51 | -8.615850e-47 |
| Msa0823400 | Msa1033560 | 0.816437 | 5.534108e-52 | -8.615850e-47 |
| Msa0823400 | Msa1034680 | 0.827064 | 1.922853e-54 | -8.615850e-47 |
| Msa0823400 | Msa1037900 | 0.806486 | 8.037938e-50 | -8.615850e-47 |
| Msa0823400 | Msa1037910 | 0.808599 | 2.861940e-50 | -8.615850e-47 |
| Msa0823400 | Msa1041530 | 0.815404 | 9.405899e-52 | -8.615850e-47 |
| Msa0823400 | Msa1042670 | 0.821483 | 3.941522e-53 | -8.615850e-47 |
| Msa0823400 | Msa1073340 | 0.828999 | 6.576817e-55 | -8.615850e-47 |
| Msa0823400 | Msa1081570 | 0.813216 | 2.863287e-51 | -8.615850e-47 |
| Msa0823400 | Msa1084520 | 0.815669 | 8.212977e-52 | -8.615850e-47 |
| Msa0823400 | Msa1092020 | 0.822315 | 2.529274e-53 | -8.615850e-47 |
| Msa0823400 | Msa1100140 | 0.822572 | 2.204628e-53 | -8.615850e-47 |
| Msa0823400 | Msa1113850 | 0.845688 | 3.475415e-59 | -8.615850e-47 |
| Msa0823400 | Msa1125810 | 0.805485 | 1.304724e-49 | -8.615850e-47 |
| Msa0823400 | Msa1127140 | 0.823021 | 1.733057e-53 | -8.615850e-47 |
| Msa0823400 | Msa1129960 | 0.803394 | 3.560755e-49 | -8.615850e-47 |
| Msa0823400 | Msa1130010 | 0.823227 | 1.551919e-53 | -8.615850e-47 |
| Msa0823400 | Msa1135380 | 0.825061 | 5.755736e-54 | -8.615850e-47 |
| Msa0823400 | Msa1135520 | 0.807640 | 4.578700e-50 | -8.615850e-47 |
| Msa0823400 | Msa1145020 | 0.892614 | 1.349943e-74 | -8.615850e-47 |
| Msa0823400 | Msa1160400 | 0.812978 | 3.230117e-51 | -8.615850e-47 |
| Msa0823400 | Msa1166400 | 0.821308 | 4.326915e-53 | -8.615850e-47 |
| Msa0823400 | Msa1169990 | 0.822700 | 2.058766e-53 | -8.615850e-47 |
| Msa0823400 | Msa1171310 | 0.816353 | 5.777339e-52 | -8.615850e-47 |
| Msa0823400 | Msa1177400 | 0.834335 | 3.180415e-56 | -8.615850e-47 |
| Msa0823400 | Msa1179520 | 0.829285 | 5.606625e-55 | -8.615850e-47 |
| Msa0823400 | Msa1201110 | 0.824772 | 6.733070e-54 | -8.615850e-47 |
| Msa0823400 | Msa1201160 | 0.833451 | 5.292204e-56 | -8.615850e-47 |
| Msa0823400 | Msa1228190 | 0.859591 | 3.720106e-63 | -8.615850e-47 |
| Msa0823400 | Msa1228610 | 0.812721 | 3.675641e-51 | -8.615850e-47 |
| Msa0823400 | Msa1233560 | 0.836114 | 1.131288e-56 | -8.615850e-47 |
| Msa0823400 | Msa1271260 | 0.846346 | 2.300440e-59 | -8.615850e-47 |
| Msa0823400 | Msa1294290 | 0.839935 | 1.176653e-57 | -8.615850e-47 |
| Msa0823400 | Msa1305510 | 0.832199 | 1.083131e-55 | -8.615850e-47 |
| Msa0823400 | Msa1313970 | 0.818342 | 2.060846e-52 | -8.615850e-47 |
| Msa0823400 | Msa1317170 | 0.800150 | 1.649299e-48 | -8.615850e-47 |
| Msa0823400 | Msa1345420 | 0.863309 | 2.729097e-64 | -8.615850e-47 |
| Msa0823400 | Msa1374550 | 0.810248 | 1.266754e-50 | -8.615850e-47 |
| Msa0823400 | Msa1378770 | 0.811230 | 7.766432e-51 | -8.615850e-47 |
| Msa0823400 | Msa1379970 | 0.847321 | 1.244917e-59 | -8.615850e-47 |
| Msa0823400 | Msa1389050 | 0.820597 | 6.304528e-53 | -8.615850e-47 |
| Msa0823400 | Msa1394890 | 0.818427 | 1.971511e-52 | -8.615850e-47 |
| Msa0823400 | Msa1406780 | 0.817209 | 3.713107e-52 | -8.615850e-47 |
| Msa0823400 | Msa1420060 | 0.855416 | 6.404359e-62 | -8.615850e-47 |
| Msa0823400 | Msa1421550 | 0.866476 | 2.773695e-65 | -8.615850e-47 |
| Msa0823400 | Msa1423460 | 0.802908 | 4.487294e-49 | -8.615850e-47 |
| Msa0823400 | Msa1424690 | 0.805732 | 1.158010e-49 | -8.615850e-47 |
| Msa0823400 | Msa1431850 | 0.826576 | 2.515175e-54 | -8.615850e-47 |
| Msa0823400 | Msa1435480 | 0.872559 | 2.897807e-67 | -8.615850e-47 |
| Msa0823400 | Msa1442630 | 0.829618 | 4.653944e-55 | -8.615850e-47 |
| Msa0823400 | Msa1455590 | 0.825270 | 5.138070e-54 | -8.615850e-47 |
| Msa0823400 | Msa1456730 | 0.803752 | 3.000114e-49 | -8.615850e-47 |
| Msa0823400 | Msa1458910 | 0.829906 | 3.959611e-55 | -8.615850e-47 |
| Msa0823400 | Msa1459530 | 0.823448 | 1.377600e-53 | -8.615850e-47 |
| Msa0823400 | Msa1462530 | 0.820265 | 7.515239e-53 | -8.615850e-47 |
| Msa0124130 | Msa0823400 | 0.833657 | 4.702123e-56 | -8.615850e-47 |
| Msa0130570 | Msa0823400 | 0.818988 | 1.470465e-52 | -8.615850e-47 |
| Msa0141600 | Msa0823400 | 0.800873 | 1.174921e-48 | -8.615850e-47 |
| Msa0149140 | Msa0823400 | 0.819080 | 1.401076e-52 | -8.615850e-47 |
| Msa0152480 | Msa0823400 | 0.808952 | 2.405477e-50 | -8.615850e-47 |
| Msa0152500 | Msa0823400 | 0.814874 | 1.233470e-51 | -8.615850e-47 |
| Msa0153420 | Msa0823400 | 0.820156 | 7.960916e-53 | -8.615850e-47 |
| Msa0156250 | Msa0823400 | 0.820847 | 5.523217e-53 | -8.615850e-47 |
| Msa0157290 | Msa0823400 | 0.800195 | 1.614956e-48 | -8.615850e-47 |
| Msa0161680 | Msa0823400 | 0.810505 | 1.114729e-50 | -8.615850e-47 |
| Msa0176470 | Msa0823400 | 0.839815 | 1.264321e-57 | -8.615850e-47 |
| Msa0191040 | Msa0823400 | 0.818786 | 1.634282e-52 | -8.615850e-47 |
| Msa0194380 | Msa0823400 | 0.835721 | 1.423185e-56 | -8.615850e-47 |
| Msa0197930 | Msa0823400 | 0.812485 | 4.141468e-51 | -8.615850e-47 |
| Msa0203030 | Msa0823400 | 0.845199 | 4.714361e-59 | -8.615850e-47 |
| Msa0206800 | Msa0823400 | 0.828957 | 6.735562e-55 | -8.615850e-47 |
| Msa0212150 | Msa0823400 | 0.816030 | 6.823691e-52 | -8.615850e-47 |
| Msa0219190 | Msa0823400 | 0.837609 | 4.697782e-57 | -8.615850e-47 |
| Msa0221090 | Msa0823400 | 0.828484 | 8.765412e-55 | -8.615850e-47 |
| Msa0233340 | Msa0823400 | 0.818205 | 2.213685e-52 | -8.615850e-47 |
| Msa0236110 | Msa0823400 | 0.818950 | 1.499852e-52 | -8.615850e-47 |
| Msa0373960 | Msa0823400 | 0.884826 | 1.375769e-71 | -8.615850e-47 |
| Msa0382010 | Msa0823400 | 0.831195 | 1.915046e-55 | -8.615850e-47 |
| Msa0392420 | Msa0823400 | 0.819082 | 1.399699e-52 | -8.615850e-47 |
| Msa0392460 | Msa0823400 | 0.807046 | 6.119070e-50 | -8.615850e-47 |
| Msa0392490 | Msa0823400 | 0.810451 | 1.145180e-50 | -8.615850e-47 |
| Msa0406000 | Msa0823400 | 0.847856 | 8.872263e-60 | -8.615850e-47 |
| Msa0423100 | Msa0823400 | 0.856175 | 3.843519e-62 | -8.615850e-47 |
| Msa0424330 | Msa0823400 | 0.831023 | 2.111536e-55 | -8.615850e-47 |
| Msa0424340 | Msa0823400 | 0.817303 | 3.535722e-52 | -8.615850e-47 |
| Msa0424350 | Msa0823400 | 0.804203 | 2.418022e-49 | -8.615850e-47 |
| Msa0436500 | Msa0823400 | 0.842174 | 3.036937e-58 | -8.615850e-47 |
| Msa0441590 | Msa0823400 | 0.819849 | 9.355982e-53 | -8.615850e-47 |
| Msa0451400 | Msa0823400 | 0.857654 | 1.408615e-62 | -8.615850e-47 |
| Msa0469260 | Msa0823400 | 0.851212 | 1.028274e-60 | -8.615850e-47 |
| Msa0476590 | Msa0823400 | 0.802198 | 6.286382e-49 | -8.615850e-47 |
| Msa0251240 | Msa0823400 | 0.809881 | 1.519799e-50 | -8.615850e-47 |
| Msa0252630 | Msa0823400 | 0.815970 | 7.036047e-52 | -8.615850e-47 |
| Msa0252770 | Msa0823400 | 0.815350 | 9.672429e-52 | -8.615850e-47 |
| Msa0262560 | Msa0823400 | 0.831828 | 1.337767e-55 | -8.615850e-47 |
| Msa0273990 | Msa0823400 | 0.817011 | 4.113071e-52 | -8.615850e-47 |
| Msa0277290 | Msa0823400 | 0.821748 | 3.423131e-53 | -8.615850e-47 |
| Msa0288190 | Msa0823400 | 0.820790 | 5.693236e-53 | -8.615850e-47 |
| Msa0288200 | Msa0823400 | 0.831222 | 1.886796e-55 | -8.615850e-47 |
| Msa0291330 | Msa0823400 | 0.807060 | 6.078801e-50 | -8.615850e-47 |
| Msa0298240 | Msa0823400 | 0.836849 | 7.350443e-57 | -8.615850e-47 |
| Msa0306120 | Msa0823400 | 0.808446 | 3.085077e-50 | -8.615850e-47 |
| Msa0311690 | Msa0823400 | 0.801512 | 8.694582e-49 | -8.615850e-47 |
| Msa0314630 | Msa0823400 | 0.826933 | 2.066604e-54 | -8.615850e-47 |
| Msa0322830 | Msa0823400 | 0.829171 | 5.975024e-55 | -8.615850e-47 |
| Msa0322840 | Msa0823400 | 0.840164 | 1.025102e-57 | -8.615850e-47 |
| Msa0322860 | Msa0823400 | 0.835934 | 1.256764e-56 | -8.615850e-47 |
| Msa0326540 | Msa0823400 | 0.832583 | 8.701711e-56 | -8.615850e-47 |
| Msa0329620 | Msa0823400 | 0.844306 | 8.205163e-59 | -8.615850e-47 |
| Msa0331530 | Msa0823400 | 0.807007 | 6.238604e-50 | -8.615850e-47 |
| Msa0331540 | Msa0823400 | 0.802101 | 6.582968e-49 | -8.615850e-47 |
| Msa0351770 | Msa0823400 | 0.858302 | 9.046379e-63 | -8.615850e-47 |
| Msa0359250 | Msa0823400 | 0.853102 | 2.983529e-61 | -8.615850e-47 |
| Msa0487570 | Msa0823400 | 0.824152 | 9.420873e-54 | -8.615850e-47 |
| Msa0487630 | Msa0823400 | 0.809603 | 1.743961e-50 | -8.615850e-47 |
| Msa0492190 | Msa0823400 | 0.851527 | 8.372416e-61 | -8.615850e-47 |
| Msa0503580 | Msa0823400 | 0.821031 | 5.010688e-53 | -8.615850e-47 |
| Msa0514980 | Msa0823400 | 0.823418 | 1.400360e-53 | -8.615850e-47 |
| Msa0515950 | Msa0823400 | 0.816234 | 6.143425e-52 | -8.615850e-47 |
| Msa0520510 | Msa0823400 | 0.860432 | 2.074182e-63 | -8.615850e-47 |
| Msa0533080 | Msa0823400 | 0.815519 | 8.867995e-52 | -8.615850e-47 |
| Msa0534930 | Msa0823400 | 0.846812 | 1.716480e-59 | -8.615850e-47 |
| Msa0535040 | Msa0823400 | 0.848019 | 7.999514e-60 | -8.615850e-47 |
| Msa0575740 | Msa0823400 | 0.858589 | 7.425916e-63 | -8.615850e-47 |
| Msa0591790 | Msa0823400 | 0.825481 | 4.579868e-54 | -8.615850e-47 |
| Msa0591800 | Msa0823400 | 0.839622 | 1.419439e-57 | -8.615850e-47 |
| Msa0594090 | Msa0823400 | 0.806570 | 7.714336e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823400 | MtrunA17_Chr5g0443691 | 94.495 | 109 | 6 | 0 | 6 | 114 | 22 | 130 | 5.86e-70 | 218 |
| Msa0823400 | MtrunA17_Chr5g0443691 | 100.000 | 83 | 0 | 0 | 109 | 191 | 319 | 401 | 1.41e-52 | 173 |
| Msa0823400 | MtrunA17_Chr3g0098401 | 59.804 | 102 | 31 | 2 | 14 | 106 | 1 | 101 | 1.02e-32 | 115 |
| Msa0823400 | MtrunA17_Chr3g0098391 | 58.750 | 80 | 32 | 1 | 109 | 188 | 118 | 196 | 4.06e-25 | 98.2 |
| Msa0823400 | MtrunA17_Chr2g0286281 | 70.000 | 60 | 18 | 0 | 109 | 168 | 308 | 367 | 3.86e-22 | 92.8 |
| Msa0823400 | MtrunA17_Chr7g0263521 | 56.000 | 75 | 26 | 1 | 109 | 183 | 292 | 359 | 2.17e-21 | 90.1 |
| Msa0823400 | MtrunA17_Chr1g0181821 | 56.522 | 69 | 30 | 0 | 109 | 177 | 293 | 361 | 9.81e-21 | 88.2 |
| Msa0823400 | MtrunA17_Chr2g0327471 | 61.667 | 60 | 23 | 0 | 109 | 168 | 310 | 369 | 1.08e-20 | 88.2 |
| Msa0823400 | MtrunA17_Chr1g0213991 | 63.333 | 60 | 22 | 0 | 109 | 168 | 316 | 375 | 2.23e-20 | 87.8 |
| Msa0823400 | MtrunA17_Chr2g0327531 | 60.000 | 60 | 24 | 0 | 109 | 168 | 262 | 321 | 3.66e-20 | 86.7 |
| Msa0823400 | MtrunA17_Chr2g0327511 | 60.000 | 60 | 24 | 0 | 109 | 168 | 327 | 386 | 1.65e-19 | 85.1 |
| Msa0823400 | MtrunA17_Chr2g0288121 | 59.016 | 61 | 25 | 0 | 109 | 169 | 261 | 321 | 1.83e-18 | 81.6 |
| Msa0823400 | MtrunA17_Chr7g0237401 | 35.398 | 113 | 66 | 1 | 57 | 169 | 267 | 372 | 5.40e-17 | 77.8 |
| Msa0823400 | MtrunA17_Chr7g0237401 | 33.333 | 120 | 55 | 3 | 14 | 109 | 1 | 119 | 2.17e-11 | 61.6 |
| Msa0823400 | MtrunA17_Chr1g0189791 | 53.846 | 65 | 30 | 0 | 109 | 173 | 290 | 354 | 5.70e-17 | 78.2 |
| Msa0823400 | MtrunA17_Chr3g0143961 | 56.897 | 58 | 25 | 0 | 111 | 168 | 288 | 345 | 1.55e-16 | 76.3 |
| Msa0823400 | MtrunA17_Chr4g0074651 | 44.444 | 72 | 38 | 1 | 113 | 184 | 346 | 415 | 1.49e-14 | 70.9 |
| Msa0823400 | MtrunA17_Chr4g0066761 | 58.491 | 53 | 22 | 0 | 112 | 164 | 293 | 345 | 1.27e-13 | 68.2 |
| Msa0823400 | MtrunA17_Chr1g0153851 | 46.552 | 58 | 31 | 0 | 111 | 168 | 270 | 327 | 1.36e-13 | 67.8 |
| Msa0823400 | MtrunA17_Chr7g0275131 | 51.667 | 60 | 29 | 0 | 109 | 168 | 292 | 351 | 2.93e-13 | 67.4 |
| Msa0823400 | MtrunA17_Chr7g0251771 | 45.455 | 66 | 36 | 0 | 103 | 168 | 263 | 328 | 1.98e-12 | 64.7 |
| Msa0823400 | MtrunA17_Chr2g0327541 | 42.857 | 77 | 40 | 3 | 109 | 184 | 331 | 404 | 2.78e-12 | 64.3 |
| Msa0823400 | MtrunA17_Chr1g0191631 | 49.206 | 63 | 32 | 0 | 109 | 171 | 369 | 431 | 2.79e-12 | 64.3 |
| Msa0823400 | MtrunA17_Chr8g0380441 | 36.667 | 90 | 56 | 1 | 88 | 176 | 274 | 363 | 3.03e-12 | 64.3 |
| Msa0823400 | MtrunA17_Chr2g0320111 | 44.444 | 63 | 35 | 0 | 109 | 171 | 315 | 377 | 1.51e-11 | 62.4 |
| Msa0823400 | MtrunA17_Chr4g0076271 | 47.458 | 59 | 31 | 0 | 110 | 168 | 191 | 249 | 3.89e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0823400 | AT5G18610.1 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0823400 | AT5G18610.2 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0823400 | AT5G18610.3 | 68.333 | 60 | 19 | 0 | 109 | 168 | 302 | 361 | 3.49e-21 | 90.5 |
| Msa0823400 | AT3G20530.1 | 63.934 | 61 | 22 | 0 | 109 | 169 | 302 | 362 | 4.76e-21 | 89.4 |
| Msa0823400 | AT3G20530.1 | 53.425 | 73 | 33 | 1 | 32 | 104 | 32 | 103 | 1.89e-19 | 85.1 |
| Msa0823400 | AT1G61860.1 | 57.895 | 76 | 31 | 1 | 109 | 184 | 304 | 378 | 8.19e-21 | 89.0 |
| Msa0823400 | AT5G02800.1 | 63.333 | 60 | 22 | 0 | 109 | 168 | 292 | 351 | 3.12e-20 | 87.0 |
| Msa0823400 | AT3G20530.2 | 53.425 | 73 | 33 | 1 | 32 | 104 | 32 | 103 | 2.29e-19 | 84.0 |
| Msa0823400 | AT2G28590.1 | 50.000 | 84 | 35 | 2 | 109 | 187 | 317 | 398 | 7.80e-19 | 83.6 |
| Msa0823400 | AT1G07870.1 | 58.333 | 60 | 25 | 0 | 109 | 168 | 322 | 381 | 2.67e-18 | 82.0 |
| Msa0823400 | AT1G07870.2 | 58.333 | 60 | 25 | 0 | 109 | 168 | 322 | 381 | 2.90e-18 | 82.4 |
| Msa0823400 | AT5G13160.1 | 56.667 | 60 | 26 | 0 | 109 | 168 | 305 | 364 | 7.68e-17 | 78.2 |
| Msa0823400 | AT5G13160.1 | 37.209 | 86 | 47 | 2 | 23 | 104 | 25 | 107 | 1.01e-11 | 63.2 |
| Msa0823400 | AT3G24790.2 | 50.847 | 59 | 29 | 0 | 109 | 167 | 284 | 342 | 6.24e-15 | 72.4 |
| Msa0823400 | AT3G24790.1 | 50.847 | 59 | 29 | 0 | 109 | 167 | 266 | 324 | 7.00e-15 | 72.0 |
| Msa0823400 | AT3G02810.1 | 49.180 | 61 | 31 | 0 | 109 | 169 | 285 | 345 | 7.52e-15 | 72.4 |
| Msa0823400 | AT5G16500.1 | 52.459 | 61 | 29 | 0 | 109 | 169 | 294 | 354 | 1.34e-14 | 71.6 |
| Msa0823400 | AT1G20650.1 | 56.897 | 58 | 25 | 0 | 111 | 168 | 298 | 355 | 1.81e-14 | 70.9 |
| Msa0823400 | AT4G13190.2 | 48.333 | 60 | 31 | 0 | 109 | 168 | 143 | 202 | 2.54e-13 | 66.6 |
| Msa0823400 | AT4G13190.3 | 48.333 | 60 | 31 | 0 | 109 | 168 | 143 | 202 | 2.54e-13 | 66.6 |
| Msa0823400 | AT4G13190.1 | 48.333 | 60 | 31 | 0 | 109 | 168 | 290 | 349 | 2.72e-13 | 67.8 |
| Msa0823400 | AT4G13190.5 | 48.333 | 60 | 31 | 0 | 109 | 168 | 201 | 260 | 4.76e-13 | 66.6 |
| Msa0823400 | AT3G07070.1 | 40.698 | 86 | 42 | 2 | 109 | 186 | 298 | 382 | 1.10e-12 | 65.9 |
| Msa0823400 | AT1G76370.1 | 50.000 | 60 | 30 | 0 | 109 | 168 | 293 | 352 | 1.06e-11 | 63.2 |
Find 50 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTGATCCTATGAATTT+TGG | 0.134605 | 5_3:-62071314 | None:intergenic |
| TTTGGTCAGATCAAATATTT+AGG | 0.156244 | 5_3:+62071471 | Msa0823400:CDS |
| CATAACATTTGTTCTAAATC+TGG | 0.300095 | 5_3:+62071578 | Msa0823400:CDS |
| ATGGTTGATCCATTGCTAAA+AGG | 0.324510 | 5_3:+62073636 | Msa0823400:CDS |
| CATTAAAAGCATAAATAATA+AGG | 0.330286 | 5_3:+62071992 | Msa0823400:CDS |
| ATGATTGGTGAAGGAGGCTT+TGG | 0.350796 | 5_3:+62071951 | Msa0823400:CDS |
| CACATTGAAGAAAAGCATTA+AGG | 0.356021 | 5_3:+62071550 | Msa0823400:CDS |
| TTTCAAATCAATGTAACCTT+TGG | 0.358757 | 5_3:-62071411 | None:intergenic |
| GAGGAAGAAAATACCAGAAA+TGG | 0.371010 | 5_3:+62071852 | Msa0823400:CDS |
| TTTCACATCAACAATATGAT+TGG | 0.385541 | 5_3:+62071936 | Msa0823400:CDS |
| GTTCTTCAAAGGCCATAGTT+AGG | 0.392855 | 5_3:-62071254 | None:intergenic |
| TCTTCAAAATGACACACTAT+TGG | 0.393606 | 5_3:-62073945 | None:intergenic |
| TCTTTGAAGCCAAAATTCAT+AGG | 0.402958 | 5_3:+62071305 | Msa0823400:five_prime_UTR |
| TGGTTGATCCATTGCTAAAA+GGG | 0.405784 | 5_3:+62073637 | Msa0823400:CDS |
| TTGGTCAGATCAAATATTTA+GGG | 0.417148 | 5_3:+62071472 | Msa0823400:CDS |
| AAGGTTACATTGATTTGAAA+AGG | 0.417280 | 5_3:+62071414 | Msa0823400:five_prime_UTR |
| AAATGAATTTCATAGATTAG+AGG | 0.428405 | 5_3:+62073850 | Msa0823400:three_prime_UTR |
| GCTAATGCTCGACCTTTGAT+TGG | 0.440229 | 5_3:+62073723 | Msa0823400:CDS |
| GTAACCTTTGGACATTCATA+AGG | 0.441867 | 5_3:-62071399 | None:intergenic |
| AATGTTTCATTGTTCTTCAA+AGG | 0.462690 | 5_3:-62071265 | None:intergenic |
| AATTGCAGCAATGTGTCTAT+TGG | 0.471623 | 5_3:+62073695 | Msa0823400:CDS |
| TGATTGGTGAAGGAGGCTTT+GGG | 0.474756 | 5_3:+62071952 | Msa0823400:CDS |
| AGCAATGAGGCATGTACAAG+TGG | 0.485378 | 5_3:+62073773 | Msa0823400:CDS |
| ATGGTAAGAAAGTATCTTAG+AGG | 0.495881 | 5_3:-62071889 | None:intergenic |
| TTGCTGCAATTGCTAGTGCT+TGG | 0.502816 | 5_3:-62073683 | None:intergenic |
| GCTTGGAATAGACCCCTCAT+TGG | 0.504156 | 5_3:-62073666 | None:intergenic |
| AAAGAAACTTCTATTGAGAA+AGG | 0.507151 | 5_3:+62073813 | Msa0823400:CDS |
| GAAAATACCAGAAATGGAAA+AGG | 0.508454 | 5_3:+62071858 | Msa0823400:CDS |
| CTTGGAATAGACCCCTCATT+GGG | 0.515018 | 5_3:-62073665 | None:intergenic |
| TAGAGGGATAGTGAATGAAA+AGG | 0.537028 | 5_3:+62073876 | Msa0823400:three_prime_UTR |
| CAAAAGAAAATATACATCAA+TGG | 0.539816 | 5_3:+62073617 | Msa0823400:CDS |
| ATATTGTAGATGGTGGCAAA+CGG | 0.554022 | 5_3:+62071817 | Msa0823400:intron |
| ATCAACAATATGATTGGTGA+AGG | 0.567519 | 5_3:+62071942 | Msa0823400:CDS |
| TAGTTGCAACGCATAGCTCA+TGG | 0.569513 | 5_3:-62071908 | None:intergenic |
| AACAATATGATTGGTGAAGG+AGG | 0.575519 | 5_3:+62071945 | Msa0823400:CDS |
| TCATAGATTAGAGGTCATAG+AGG | 0.583942 | 5_3:+62073859 | Msa0823400:three_prime_UTR |
| GCTTTGGGAGAGTATACAAA+GGG | 0.587572 | 5_3:+62071967 | Msa0823400:CDS |
| TAAAAGGGAACTACCCAATG+AGG | 0.597723 | 5_3:+62073652 | Msa0823400:CDS |
| AAAAGGGAACTACCCAATGA+GGG | 0.597816 | 5_3:+62073653 | Msa0823400:CDS |
| TGCAGCAATGTGTCTATTGG+AGG | 0.599947 | 5_3:+62073698 | Msa0823400:CDS |
| CATAGATTAGAGGTCATAGA+GGG | 0.603289 | 5_3:+62073860 | Msa0823400:three_prime_UTR |
| ACAATGAAACATTGCCAATG+TGG | 0.618018 | 5_3:+62071275 | Msa0823400:five_prime_UTR |
| GGTCAGATCAAATATTTAGG+GGG | 0.621985 | 5_3:+62071474 | Msa0823400:CDS |
| TGGTCAGATCAAATATTTAG+GGG | 0.631182 | 5_3:+62071473 | Msa0823400:CDS |
| AGCTCCTTATGAATGTCCAA+AGG | 0.634892 | 5_3:+62071395 | Msa0823400:five_prime_UTR |
| GTGACTACATCACCAATCAA+AGG | 0.646059 | 5_3:-62073735 | None:intergenic |
| GGCTTTGGGAGAGTATACAA+AGG | 0.654988 | 5_3:+62071966 | Msa0823400:CDS |
| GCAATGAGGCATGTACAAGT+GGG | 0.667750 | 5_3:+62073774 | Msa0823400:CDS |
| AAAGGGAACTACCCAATGAG+GGG | 0.687981 | 5_3:+62073654 | Msa0823400:CDS |
| CAAACGGAAGTACATAGCAG+AGG | 0.702175 | 5_3:+62071833 | Msa0823400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAAAGTTTTACAATTA+AGG | - | chr5_3:62071802-62071821 | None:intergenic | 10.0% |
| !!! | TATTTCAATTTTTTATCATT+TGG | - | chr5_3:62073400-62073419 | None:intergenic | 10.0% |
| !!! | TATGTTTTAATATAAGAATA+GGG | - | chr5_3:62073460-62073479 | None:intergenic | 10.0% |
| !!! | ATATGTTTTAATATAAGAAT+AGG | - | chr5_3:62073461-62073480 | None:intergenic | 10.0% |
| !!! | CATTAAAAGCATAAATAATA+AGG | + | chr5_3:62071992-62072011 | Msa0823400:CDS | 15.0% |
| !! | AAAATTGTATAGTACAAATA+TGG | + | chr5_3:62072562-62072581 | Msa0823400:intron | 15.0% |
| !! | TATAAATTTCATGTATGATT+TGG | - | chr5_3:62072664-62072683 | None:intergenic | 15.0% |
| !! | CAAAATAAATTGAAAAATGA+AGG | + | chr5_3:62072703-62072722 | Msa0823400:intron | 15.0% |
| !!! | TCATAACATTTTTTTTATTC+AGG | + | chr5_3:62073575-62073594 | Msa0823400:intron | 15.0% |
| !!! | ATAATTTCTTTTCCTAACTA+TGG | + | chr5_3:62071242-62071261 | Msa0823400:five_prime_UTR | 20.0% |
| !!! | ATCAATGTTGTTTTTATGAT+GGG | + | chr5_3:62071328-62071347 | Msa0823400:five_prime_UTR | 20.0% |
| !!! | ACTTTGTAATTTTGTAAATG+TGG | + | chr5_3:62071447-62071466 | Msa0823400:exon | 20.0% |
| !!! | TAATTTTGTAAATGTGGTTT+TGG | + | chr5_3:62071453-62071472 | Msa0823400:exon | 20.0% |
| !! | TTTCACATTAAATATTGCAA+AGG | + | chr5_3:62071647-62071666 | Msa0823400:intron | 20.0% |
| !! | TTCACATTAAATATTGCAAA+GGG | + | chr5_3:62071648-62071667 | Msa0823400:intron | 20.0% |
| !!! | TATTGATTTTCATGTTATAG+AGG | + | chr5_3:62071671-62071690 | Msa0823400:intron | 20.0% |
| !! | GTAAAACTTTATATTGTAGA+TGG | + | chr5_3:62071807-62071826 | Msa0823400:intron | 20.0% |
| !! | TGCTAACAAATTAAGTTATT+CGG | + | chr5_3:62072052-62072071 | Msa0823400:intron | 20.0% |
| !! | TTAAAAATTGAACATCAAAC+CGG | + | chr5_3:62072090-62072109 | Msa0823400:intron | 20.0% |
| !!! | GTTTTAAAAATTGAACAAGA+CGG | - | chr5_3:62072235-62072254 | None:intergenic | 20.0% |
| !!! | TTGGATGATTTAAGATTTTT+AGG | - | chr5_3:62072532-62072551 | None:intergenic | 20.0% |
| !!! | TACAATTTTGATACTAGAAT+TGG | - | chr5_3:62072551-62072570 | None:intergenic | 20.0% |
| !!! | ATAAAATGTGCTTTATTTTG+TGG | - | chr5_3:62072588-62072607 | None:intergenic | 20.0% |
| !!! | TTAGCAAGTTTTATTAGAAA+GGG | - | chr5_3:62072779-62072798 | None:intergenic | 20.0% |
| !!! | TTTAGCAAGTTTTATTAGAA+AGG | - | chr5_3:62072780-62072799 | None:intergenic | 20.0% |
| !!! | GAAAATCATTTTTCTTTAGT+TGG | - | chr5_3:62072813-62072832 | None:intergenic | 20.0% |
| !! | ACACAAAAATTGTGTATTAT+TGG | + | chr5_3:62073489-62073508 | Msa0823400:intron | 20.0% |
| !!! | ATGTTATGAATGTCAATTTT+AGG | - | chr5_3:62073564-62073583 | None:intergenic | 20.0% |
| !! | CAAAAGAAAATATACATCAA+TGG | + | chr5_3:62073617-62073636 | Msa0823400:CDS | 20.0% |
| !! | AAATGAATTTCATAGATTAG+AGG | + | chr5_3:62073850-62073869 | Msa0823400:three_prime_UTR | 20.0% |
| ! | AATGTTTCATTGTTCTTCAA+AGG | - | chr5_3:62071268-62071287 | None:intergenic | 25.0% |
| !! | AACATTGATCCTATGAATTT+TGG | - | chr5_3:62071317-62071336 | None:intergenic | 25.0% |
| !!! | GATCAATGTTGTTTTTATGA+TGG | + | chr5_3:62071327-62071346 | Msa0823400:five_prime_UTR | 25.0% |
| ! | TTTCAAATCAATGTAACCTT+TGG | - | chr5_3:62071414-62071433 | None:intergenic | 25.0% |
| !!! | AAGGTTACATTGATTTGAAA+AGG | + | chr5_3:62071414-62071433 | Msa0823400:five_prime_UTR | 25.0% |
| ! | TTTGGTCAGATCAAATATTT+AGG | + | chr5_3:62071471-62071490 | Msa0823400:CDS | 25.0% |
| ! | TTGGTCAGATCAAATATTTA+GGG | + | chr5_3:62071472-62071491 | Msa0823400:CDS | 25.0% |
| !! | CATAACATTTGTTCTAAATC+TGG | + | chr5_3:62071578-62071597 | Msa0823400:CDS | 25.0% |
| ! | AAACTTTATATTGTAGATGG+TGG | + | chr5_3:62071810-62071829 | Msa0823400:intron | 25.0% |
| !! | AATATTTCCTTTTCCATTTC+TGG | - | chr5_3:62071868-62071887 | None:intergenic | 25.0% |
| ! | TTTCACATCAACAATATGAT+TGG | + | chr5_3:62071936-62071955 | Msa0823400:CDS | 25.0% |
| ! | CATATTTCAACAGTCTAAAA+CGG | + | chr5_3:62072127-62072146 | Msa0823400:intron | 25.0% |
| ! | TATTTATGACCTTTAGATCA+CGG | - | chr5_3:62072169-62072188 | None:intergenic | 25.0% |
| ! | AAATAACCAAACCATAGTAA+AGG | + | chr5_3:62072184-62072203 | Msa0823400:intron | 25.0% |
| !!! | GATTTTGGTATATGAGTATA+TGG | + | chr5_3:62072441-62072460 | Msa0823400:intron | 25.0% |
| ! | TTAAATTTCTCATAGCTGTT+TGG | + | chr5_3:62072614-62072633 | Msa0823400:intron | 25.0% |
| !! | ATTAGAAAGGGAACATTTTA+TGG | - | chr5_3:62072767-62072786 | None:intergenic | 25.0% |
| !! | TGAGAAAATGTTAAGCTTTT+AGG | - | chr5_3:62073257-62073276 | None:intergenic | 25.0% |
| !! | TAAAAGCTTAACATTTTCTC+AGG | + | chr5_3:62073256-62073275 | Msa0823400:intron | 25.0% |
| !!! | AATGTCAATTTTAGGTTCAT+TGG | - | chr5_3:62073556-62073575 | None:intergenic | 25.0% |
| !!! | TTTCTTTTGTTTTTGAGTAG+TGG | - | chr5_3:62073606-62073625 | None:intergenic | 25.0% |
| ! | AAAGAAACTTCTATTGAGAA+AGG | + | chr5_3:62073813-62073832 | Msa0823400:CDS | 25.0% |
| ! | ATCATAGAAAAATATGGTGA+TGG | - | chr5_3:62073977-62073996 | None:intergenic | 25.0% |
| ! | TCAAAGAATTTTTGCCACAT+TGG | - | chr5_3:62071292-62071311 | None:intergenic | 30.0% |
| !! | TCTTTGAAGCCAAAATTCAT+AGG | + | chr5_3:62071305-62071324 | Msa0823400:five_prime_UTR | 30.0% |
| !!! | GTTGTTTTTATGATGGGTAA+AGG | + | chr5_3:62071334-62071353 | Msa0823400:five_prime_UTR | 30.0% |
| TGGTCAGATCAAATATTTAG+GGG | + | chr5_3:62071473-62071492 | Msa0823400:CDS | 30.0% | |
| !! | CACATTGAAGAAAAGCATTA+AGG | + | chr5_3:62071550-62071569 | Msa0823400:CDS | 30.0% |
| TGAGGAAGATTAACATTGAA+GGG | - | chr5_3:62071615-62071634 | None:intergenic | 30.0% | |
| ATGAGGAAGATTAACATTGA+AGG | - | chr5_3:62071616-62071635 | None:intergenic | 30.0% | |
| GTGAAATAATTGAGACAATG+AGG | - | chr5_3:62071633-62071652 | None:intergenic | 30.0% | |
| ACAACAATTGAGGTAAAAAG+TGG | - | chr5_3:62071774-62071793 | None:intergenic | 30.0% | |
| GAAAATACCAGAAATGGAAA+AGG | + | chr5_3:62071858-62071877 | Msa0823400:CDS | 30.0% | |
| !! | ATGGTAAGAAAGTATCTTAG+AGG | - | chr5_3:62071892-62071911 | None:intergenic | 30.0% |
| ATCAACAATATGATTGGTGA+AGG | + | chr5_3:62071942-62071961 | Msa0823400:CDS | 30.0% | |
| GGTATAATATTACTTGTGCT+AGG | + | chr5_3:62072013-62072032 | Msa0823400:intron | 30.0% | |
| AATTGACCTTTACTATGGTT+TGG | - | chr5_3:62072193-62072212 | None:intergenic | 30.0% | |
| TGCTGTAAAGAAACTTAACA+AGG | + | chr5_3:62072309-62072328 | Msa0823400:intron | 30.0% | |
| GTAAAGAAACTTAACAAGGA+TGG | + | chr5_3:62072313-62072332 | Msa0823400:intron | 30.0% | |
| ! | TGTGCATTTTCTTACCAAAA+AGG | - | chr5_3:62072489-62072508 | None:intergenic | 30.0% |
| CAATCTTGCATGTAATTACT+GGG | - | chr5_3:62072742-62072761 | None:intergenic | 30.0% | |
| ACTAGAATGAAAATTGCAGA+AGG | + | chr5_3:62072870-62072889 | Msa0823400:intron | 30.0% | |
| ! | AATCCAAAACTCTCTGATTT+TGG | + | chr5_3:62072990-62073009 | Msa0823400:intron | 30.0% |
| !! | TGTTTCTAGAGATGATTACT+GGG | + | chr5_3:62073150-62073169 | Msa0823400:intron | 30.0% |
| ATCATCTGAAGAAGAAAACT+TGG | + | chr5_3:62073196-62073215 | Msa0823400:intron | 30.0% | |
| AAGAAGAAAACTTGGTCATT+TGG | + | chr5_3:62073204-62073223 | Msa0823400:intron | 30.0% | |
| AGAAGAAAACTTGGTCATTT+GGG | + | chr5_3:62073205-62073224 | Msa0823400:intron | 30.0% | |
| ! | GCTTTTAGGCACATAAATAA+AGG | - | chr5_3:62073243-62073262 | None:intergenic | 30.0% |
| AAGATAAATGCTAACAAGTG+TGG | + | chr5_3:62073297-62073316 | Msa0823400:intron | 30.0% | |
| AGATAAATGCTAACAAGTGT+GGG | + | chr5_3:62073298-62073317 | Msa0823400:intron | 30.0% | |
| TTAGTGCATGTTTGAATTTG+TGG | + | chr5_3:62073327-62073346 | Msa0823400:intron | 30.0% | |
| !! | TTTATCATTTGGTGCATGAT+TGG | - | chr5_3:62073389-62073408 | None:intergenic | 30.0% |
| TCTTCAAAATGACACACTAT+TGG | - | chr5_3:62073948-62073967 | None:intergenic | 30.0% | |
| ACAATGAAACATTGCCAATG+TGG | + | chr5_3:62071275-62071294 | Msa0823400:five_prime_UTR | 35.0% | |
| GTAACCTTTGGACATTCATA+AGG | - | chr5_3:62071402-62071421 | None:intergenic | 35.0% | |
| GGTCAGATCAAATATTTAGG+GGG | + | chr5_3:62071474-62071493 | Msa0823400:CDS | 35.0% | |
| ! | GCTTTTCTTCAATGTGTTCT+TGG | - | chr5_3:62071546-62071565 | None:intergenic | 35.0% |
| TAAGGAGACAACAACAATTG+AGG | - | chr5_3:62071784-62071803 | None:intergenic | 35.0% | |
| ! | ATATTGTAGATGGTGGCAAA+CGG | + | chr5_3:62071817-62071836 | Msa0823400:intron | 35.0% |
| GAGGAAGAAAATACCAGAAA+TGG | + | chr5_3:62071852-62071871 | Msa0823400:CDS | 35.0% | |
| AACAATATGATTGGTGAAGG+AGG | + | chr5_3:62071945-62071964 | Msa0823400:CDS | 35.0% | |
| ATATGATTCAGAGTTCTTGC+CGG | - | chr5_3:62072112-62072131 | None:intergenic | 35.0% | |
| ! | AACAGTCTAAAACGGTTGAA+TGG | + | chr5_3:62072135-62072154 | Msa0823400:intron | 35.0% |
| ! | ACAGTCTAAAACGGTTGAAT+GGG | + | chr5_3:62072136-62072155 | Msa0823400:intron | 35.0% |
| CCTTGAATTGACCTTTACTA+TGG | - | chr5_3:62072198-62072217 | None:intergenic | 35.0% | |
| CCATAGTAAAGGTCAATTCA+AGG | + | chr5_3:62072195-62072214 | Msa0823400:intron | 35.0% | |
| ATTGAACAAGACGGTTTAAC+CGG | - | chr5_3:62072226-62072245 | None:intergenic | 35.0% | |
| !! | GTGTTACTTATACTATACGC+AGG | + | chr5_3:62072282-62072301 | Msa0823400:intron | 35.0% |
| ! | CTTAACAAGGATGGATTTCA+AGG | + | chr5_3:62072322-62072341 | Msa0823400:intron | 35.0% |
| TCTAACCTTGTCAATTTGGT+AGG | + | chr5_3:62072394-62072413 | Msa0823400:intron | 35.0% | |
| CTAACCTTGTCAATTTGGTA+GGG | + | chr5_3:62072395-62072414 | Msa0823400:intron | 35.0% | |
| AATACCCTACCAAATTGACA+AGG | - | chr5_3:62072402-62072421 | None:intergenic | 35.0% | |
| ! | AGAAGGTGATCAAAGGATTT+TGG | + | chr5_3:62072426-62072445 | Msa0823400:intron | 35.0% |
| GTATATGAGTATATGGCGAA+TGG | + | chr5_3:62072448-62072467 | Msa0823400:intron | 35.0% | |
| ! | TCGTTAGAAGATCACCTTTT+TGG | + | chr5_3:62072472-62072491 | Msa0823400:intron | 35.0% |
| TGGTTGTCACACAAATGTAA+AGG | - | chr5_3:62072644-62072663 | None:intergenic | 35.0% | |
| GCAATCTTGCATGTAATTAC+TGG | - | chr5_3:62072743-62072762 | None:intergenic | 35.0% | |
| ! | ATGATTTTCAGAGTTACCTC+CGG | + | chr5_3:62072824-62072843 | Msa0823400:intron | 35.0% |
| AATGAAAATTGCAGAAGGTG+CGG | + | chr5_3:62072875-62072894 | Msa0823400:intron | 35.0% | |
| TTGAAATCGCGATATATCAC+CGG | - | chr5_3:62072939-62072958 | None:intergenic | 35.0% | |
| ! | AGTCCAAAATCAGAGAGTTT+TGG | - | chr5_3:62072996-62073015 | None:intergenic | 35.0% |
| ATAAAACACATGTGTCCACT+AGG | + | chr5_3:62073039-62073058 | Msa0823400:intron | 35.0% | |
| TAAAACACATGTGTCCACTA+GGG | + | chr5_3:62073040-62073059 | Msa0823400:intron | 35.0% | |
| AGGTCAGATGTTTATAGCTT+TGG | + | chr5_3:62073122-62073141 | Msa0823400:intron | 35.0% | |
| !! | AGATGTTTATAGCTTTGGAG+TGG | + | chr5_3:62073127-62073146 | Msa0823400:intron | 35.0% |
| !! | GTGTTTCTAGAGATGATTAC+TGG | + | chr5_3:62073149-62073168 | Msa0823400:intron | 35.0% |
| ! | AAGCTTAACATTTTCTCAGG+AGG | + | chr5_3:62073259-62073278 | Msa0823400:intron | 35.0% |
| ATGGTTGATCCATTGCTAAA+AGG | + | chr5_3:62073636-62073655 | Msa0823400:CDS | 35.0% | |
| TGGTTGATCCATTGCTAAAA+GGG | + | chr5_3:62073637-62073656 | Msa0823400:CDS | 35.0% | |
| AATTGCAGCAATGTGTCTAT+TGG | + | chr5_3:62073695-62073714 | Msa0823400:CDS | 35.0% | |
| !! | CTCTTGAAGTTTTAGCAATG+AGG | + | chr5_3:62073760-62073779 | Msa0823400:CDS | 35.0% |
| TCATAGATTAGAGGTCATAG+AGG | + | chr5_3:62073859-62073878 | Msa0823400:three_prime_UTR | 35.0% | |
| CATAGATTAGAGGTCATAGA+GGG | + | chr5_3:62073860-62073879 | Msa0823400:three_prime_UTR | 35.0% | |
| TAGAGGGATAGTGAATGAAA+AGG | + | chr5_3:62073876-62073895 | Msa0823400:three_prime_UTR | 35.0% | |
| GTTCTTCAAAGGCCATAGTT+AGG | - | chr5_3:62071257-62071276 | None:intergenic | 40.0% | |
| AGCTCCTTATGAATGTCCAA+AGG | + | chr5_3:62071395-62071414 | Msa0823400:five_prime_UTR | 40.0% | |
| CAGATCAAATATTTAGGGGG+TGG | + | chr5_3:62071477-62071496 | Msa0823400:CDS | 40.0% | |
| !! | GCTTTGGGAGAGTATACAAA+GGG | + | chr5_3:62071967-62071986 | Msa0823400:CDS | 40.0% |
| ! | CAGTCTAAAACGGTTGAATG+GGG | + | chr5_3:62072137-62072156 | Msa0823400:intron | 40.0% |
| GGGATAAAACCGTGATCTAA+AGG | + | chr5_3:62072157-62072176 | Msa0823400:intron | 40.0% | |
| CCAAATTGACAAGGTTAGAG+TGG | - | chr5_3:62072393-62072412 | None:intergenic | 40.0% | |
| CCACTCTAACCTTGTCAATT+TGG | + | chr5_3:62072390-62072409 | Msa0823400:intron | 40.0% | |
| ATTGTGCAGAAGGTGATCAA+AGG | + | chr5_3:62072419-62072438 | Msa0823400:intron | 40.0% | |
| CTTGCATGTAATTACTGGGA+AGG | - | chr5_3:62072738-62072757 | None:intergenic | 40.0% | |
| ! | TGATTTTCAGAGTTACCTCC+GGG | + | chr5_3:62072825-62072844 | Msa0823400:intron | 40.0% |
| ATTCTAGTGTGCCAATCCAA+AGG | - | chr5_3:62072858-62072877 | None:intergenic | 40.0% | |
| ! | GATTTTGGACTTGCAAAGCT+TGG | + | chr5_3:62073005-62073024 | Msa0823400:intron | 40.0% |
| ! | ACATGTGTTTTATCGCCTGT+CGG | - | chr5_3:62073032-62073051 | None:intergenic | 40.0% |
| TGTAGTCAATTGACCTGTTG+AGG | - | chr5_3:62073102-62073121 | None:intergenic | 40.0% | |
| CAACAGGTCAATTGACTACA+AGG | + | chr5_3:62073102-62073121 | Msa0823400:intron | 40.0% | |
| TTGGTGCATGATTGGAATCA+CGG | - | chr5_3:62073381-62073400 | None:intergenic | 40.0% | |
| TAAAAGGGAACTACCCAATG+AGG | + | chr5_3:62073652-62073671 | Msa0823400:CDS | 40.0% | |
| AAAAGGGAACTACCCAATGA+GGG | + | chr5_3:62073653-62073672 | Msa0823400:CDS | 40.0% | |
| GTGACTACATCACCAATCAA+AGG | - | chr5_3:62073738-62073757 | None:intergenic | 40.0% | |
| ! | CAAACGGAAGTACATAGCAG+AGG | + | chr5_3:62071833-62071852 | Msa0823400:CDS | 45.0% |
| TAGTTGCAACGCATAGCTCA+TGG | - | chr5_3:62071911-62071930 | None:intergenic | 45.0% | |
| ATGATTGGTGAAGGAGGCTT+TGG | + | chr5_3:62071951-62071970 | Msa0823400:CDS | 45.0% | |
| TGATTGGTGAAGGAGGCTTT+GGG | + | chr5_3:62071952-62071971 | Msa0823400:CDS | 45.0% | |
| !! | GGCTTTGGGAGAGTATACAA+AGG | + | chr5_3:62071966-62071985 | Msa0823400:CDS | 45.0% |
| AGGTCAATTCAAGGTCCAAC+CGG | + | chr5_3:62072204-62072223 | Msa0823400:intron | 45.0% | |
| AACAAGACGGTTTAACCGGT+TGG | - | chr5_3:62072222-62072241 | None:intergenic | 45.0% | |
| ! | AGGATGGATTTCAAGGAAGC+AGG | + | chr5_3:62072329-62072348 | Msa0823400:intron | 45.0% |
| ! | GGATGGATTTCAAGGAAGCA+GGG | + | chr5_3:62072330-62072349 | Msa0823400:intron | 45.0% |
| AAGCAGGGAATTTCTTGCAG+AGG | + | chr5_3:62072345-62072364 | Msa0823400:intron | 45.0% | |
| !! | TTGGTAGGGTATTGTGCAGA+AGG | + | chr5_3:62072409-62072428 | Msa0823400:intron | 45.0% |
| ! | CAATCCAAAGGCTTTTTGCC+CGG | - | chr5_3:62072846-62072865 | None:intergenic | 45.0% |
| AAATCGCGATATATCACCGG+TGG | - | chr5_3:62072936-62072955 | None:intergenic | 45.0% | |
| ATAAGTTCCCATCACCCTAG+TGG | - | chr5_3:62073057-62073076 | None:intergenic | 45.0% | |
| !! | ACTAGGGTGATGGGAACTTA+TGG | + | chr5_3:62073056-62073075 | Msa0823400:intron | 45.0% |
| ! | GGGTAGTTCCCTTTTAGCAA+TGG | - | chr5_3:62073648-62073667 | None:intergenic | 45.0% |
| AAAGGGAACTACCCAATGAG+GGG | + | chr5_3:62073654-62073673 | Msa0823400:CDS | 45.0% | |
| CTTGGAATAGACCCCTCATT+GGG | - | chr5_3:62073668-62073687 | None:intergenic | 45.0% | |
| TTGCTGCAATTGCTAGTGCT+TGG | - | chr5_3:62073686-62073705 | None:intergenic | 45.0% | |
| TGCAGCAATGTGTCTATTGG+AGG | + | chr5_3:62073698-62073717 | Msa0823400:CDS | 45.0% | |
| GCTAATGCTCGACCTTTGAT+TGG | + | chr5_3:62073723-62073742 | Msa0823400:CDS | 45.0% | |
| AGCAATGAGGCATGTACAAG+TGG | + | chr5_3:62073773-62073792 | Msa0823400:CDS | 45.0% | |
| GCAATGAGGCATGTACAAGT+GGG | + | chr5_3:62073774-62073793 | Msa0823400:CDS | 45.0% | |
| CGGGCAAAAAGCCTTTGGAT+TGG | + | chr5_3:62072844-62072863 | Msa0823400:intron | 50.0% | |
| ACATGTGTCCACTAGGGTGA+TGG | + | chr5_3:62073046-62073065 | Msa0823400:intron | 50.0% | |
| CATGTGTCCACTAGGGTGAT+GGG | + | chr5_3:62073047-62073066 | Msa0823400:intron | 50.0% | |
| TGACCTGTTGAGGCATACTC+AGG | - | chr5_3:62073092-62073111 | None:intergenic | 50.0% | |
| GCTTGGAATAGACCCCTCAT+TGG | - | chr5_3:62073669-62073688 | None:intergenic | 50.0% | |
| ACCTCCGGGCAAAAAGCCTT+TGG | + | chr5_3:62072839-62072858 | Msa0823400:intron | 55.0% | |
| ! | TCCAAAGGCTTTTTGCCCGG+AGG | - | chr5_3:62072843-62072862 | None:intergenic | 55.0% |
| ! | ATTGCAGAAGGTGCGGCGAA+AGG | + | chr5_3:62072882-62072901 | Msa0823400:intron | 55.0% |
| ACACGCAGAAGCAAAGCCAC+CGG | + | chr5_3:62072917-62072936 | Msa0823400:intron | 55.0% | |
| CTTGCAAAGCTTGGTCCGAC+AGG | + | chr5_3:62073014-62073033 | Msa0823400:intron | 55.0% | |
| GCACCTGAGTATGCCTCAAC+AGG | + | chr5_3:62073086-62073105 | Msa0823400:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 62071235 | 62073996 | 62071235 | ID=Msa0823400;Name=Msa0823400 |
| chr5_3 | mRNA | 62071235 | 62073996 | 62071235 | ID=Msa0823400-mRNA-1;Parent=Msa0823400;Name=Msa0823400-mRNA-1;_AED=0.26;_eAED=0.26;_QI=229|0.5|1|1|1|1|3|148|191 |
| chr5_3 | exon | 62071235 | 62071599 | 62071235 | ID=Msa0823400-mRNA-1:exon:19251;Parent=Msa0823400-mRNA-1 |
| chr5_3 | exon | 62071826 | 62072013 | 62071826 | ID=Msa0823400-mRNA-1:exon:19252;Parent=Msa0823400-mRNA-1 |
| chr5_3 | exon | 62073597 | 62073996 | 62073597 | ID=Msa0823400-mRNA-1:exon:19253;Parent=Msa0823400-mRNA-1 |
| chr5_3 | five_prime_UTR | 62071235 | 62071463 | 62071235 | ID=Msa0823400-mRNA-1:five_prime_utr;Parent=Msa0823400-mRNA-1 |
| chr5_3 | CDS | 62071464 | 62071599 | 62071464 | ID=Msa0823400-mRNA-1:cds;Parent=Msa0823400-mRNA-1 |
| chr5_3 | CDS | 62071826 | 62072013 | 62071826 | ID=Msa0823400-mRNA-1:cds;Parent=Msa0823400-mRNA-1 |
| chr5_3 | CDS | 62073597 | 62073848 | 62073597 | ID=Msa0823400-mRNA-1:cds;Parent=Msa0823400-mRNA-1 |
| chr5_3 | three_prime_UTR | 62073849 | 62073996 | 62073849 | ID=Msa0823400-mRNA-1:three_prime_utr;Parent=Msa0823400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
