Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100140 | XP_003621113.3 | 96.736 | 337 | 11 | 0 | 1 | 337 | 32 | 368 | 0.0 | 660 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100140 | sp|Q9LFP6|PIN8_ARATH | 56.034 | 348 | 141 | 5 | 1 | 337 | 21 | 367 | 9.89e-123 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100140 | Q5FV66 | 96.736 | 337 | 11 | 0 | 1 | 337 | 21 | 357 | 0.0 | 659 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062440 | Msa1100140 | 0.811510 | 6.754000e-51 | -8.615850e-47 |
| Msa0667810 | Msa1100140 | 0.818954 | 1.496597e-52 | -8.615850e-47 |
| Msa0725860 | Msa1100140 | 0.814394 | 1.575628e-51 | -8.615850e-47 |
| Msa0786040 | Msa1100140 | 0.808835 | 2.547281e-50 | -8.615850e-47 |
| Msa0819900 | Msa1100140 | 0.806030 | 1.002501e-49 | -8.615850e-47 |
| Msa0823400 | Msa1100140 | 0.822572 | 2.204628e-53 | -8.615850e-47 |
| Msa0124130 | Msa1100140 | 0.841630 | 4.228367e-58 | -8.615850e-47 |
| Msa0149140 | Msa1100140 | 0.811333 | 7.377415e-51 | -8.615850e-47 |
| Msa0373960 | Msa1100140 | 0.808462 | 3.061171e-50 | -8.615850e-47 |
| Msa0469260 | Msa1100140 | 0.806300 | 8.795212e-50 | -8.615850e-47 |
| Msa0996270 | Msa1100140 | 0.804136 | 2.497235e-49 | -8.615850e-47 |
| Msa0999340 | Msa1100140 | 0.803805 | 2.925765e-49 | -8.615850e-47 |
| Msa0999350 | Msa1100140 | 0.800085 | 1.700513e-48 | -8.615850e-47 |
| Msa1100140 | Msa1135520 | 0.827524 | 1.491623e-54 | -8.615850e-47 |
| Msa1100140 | Msa1271260 | 0.807892 | 4.048939e-50 | -8.615850e-47 |
| Msa1100140 | Msa1294290 | 0.800668 | 1.293651e-48 | -8.615850e-47 |
| Msa1100140 | Msa1435480 | 0.803199 | 3.906795e-49 | -8.615850e-47 |
| Msa0591800 | Msa1100140 | 0.814557 | 1.449731e-51 | -8.615850e-47 |
| Msa0860170 | Msa1100140 | 0.810888 | 9.213581e-51 | -8.615850e-47 |
| Msa0927120 | Msa1100140 | 0.817938 | 2.543186e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100140 | MtrunA17_Chr7g0216571 | 96.439 | 337 | 11 | 1 | 1 | 337 | 32 | 367 | 0.0 | 654 |
| Msa1100140 | MtrunA17_Chr6g0452821 | 70.381 | 341 | 96 | 3 | 1 | 337 | 21 | 360 | 2.34e-174 | 488 |
| Msa1100140 | MtrunA17_Chr7g0249141 | 40.118 | 339 | 199 | 2 | 1 | 335 | 21 | 359 | 2.10e-88 | 269 |
| Msa1100140 | MtrunA17_Chr1g0160461 | 66.456 | 158 | 53 | 0 | 180 | 337 | 464 | 621 | 2.34e-65 | 217 |
| Msa1100140 | MtrunA17_Chr1g0160461 | 56.522 | 138 | 60 | 0 | 1 | 138 | 21 | 158 | 4.94e-46 | 165 |
| Msa1100140 | MtrunA17_Chr4g0044181 | 56.915 | 188 | 77 | 1 | 150 | 337 | 476 | 659 | 4.50e-64 | 214 |
| Msa1100140 | MtrunA17_Chr4g0044181 | 55.797 | 138 | 61 | 0 | 1 | 138 | 21 | 158 | 2.06e-45 | 164 |
| Msa1100140 | MtrunA17_Chr6g0478431 | 49.778 | 225 | 91 | 2 | 135 | 337 | 380 | 604 | 2.15e-61 | 206 |
| Msa1100140 | MtrunA17_Chr6g0478431 | 50.562 | 178 | 85 | 2 | 1 | 176 | 21 | 197 | 6.85e-48 | 170 |
| Msa1100140 | MtrunA17_Chr7g0255941 | 62.025 | 158 | 60 | 0 | 180 | 337 | 434 | 591 | 1.60e-60 | 203 |
| Msa1100140 | MtrunA17_Chr7g0255941 | 50.282 | 177 | 85 | 2 | 1 | 175 | 21 | 196 | 3.20e-48 | 171 |
| Msa1100140 | MtrunA17_Chr4g0071571 | 51.471 | 204 | 90 | 2 | 143 | 337 | 422 | 625 | 1.61e-59 | 201 |
| Msa1100140 | MtrunA17_Chr4g0071571 | 56.738 | 141 | 56 | 2 | 1 | 138 | 21 | 159 | 3.84e-43 | 157 |
| Msa1100140 | MtrunA17_Chr1g0159341 | 56.329 | 158 | 69 | 0 | 180 | 337 | 370 | 527 | 5.67e-51 | 177 |
| Msa1100140 | MtrunA17_Chr1g0159341 | 56.522 | 138 | 60 | 0 | 1 | 138 | 21 | 158 | 1.70e-42 | 154 |
| Msa1100140 | MtrunA17_Chr4g0071561 | 53.801 | 171 | 71 | 1 | 151 | 313 | 146 | 316 | 2.51e-50 | 170 |
| Msa1100140 | MtrunA17_Chr8g0393111 | 55.944 | 143 | 62 | 1 | 1 | 142 | 21 | 163 | 2.47e-47 | 167 |
| Msa1100140 | MtrunA17_Chr8g0393111 | 52.000 | 175 | 53 | 2 | 164 | 307 | 343 | 517 | 1.06e-46 | 166 |
| Msa1100140 | MtrunA17_Chr4g0071551 | 47.872 | 188 | 84 | 5 | 1 | 177 | 21 | 205 | 2.01e-46 | 156 |
| Msa1100140 | MtrunA17_Chr2g0298971 | 46.988 | 166 | 87 | 1 | 1 | 166 | 21 | 185 | 8.52e-41 | 149 |
| Msa1100140 | MtrunA17_Chr2g0298971 | 39.301 | 229 | 90 | 6 | 133 | 316 | 293 | 517 | 9.99e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1100140 | AT5G15100.1 | 56.034 | 348 | 141 | 5 | 1 | 337 | 21 | 367 | 1.00e-123 | 360 |
| Msa1100140 | AT5G16530.1 | 41.566 | 332 | 186 | 4 | 1 | 332 | 21 | 344 | 4.78e-86 | 263 |
| Msa1100140 | AT5G16530.2 | 41.139 | 316 | 178 | 4 | 1 | 316 | 21 | 328 | 8.36e-79 | 244 |
| Msa1100140 | AT2G01420.2 | 60.759 | 158 | 62 | 0 | 180 | 337 | 459 | 616 | 1.42e-60 | 204 |
| Msa1100140 | AT2G01420.2 | 47.849 | 186 | 86 | 3 | 1 | 177 | 21 | 204 | 3.07e-45 | 163 |
| Msa1100140 | AT2G01420.1 | 60.759 | 158 | 62 | 0 | 180 | 337 | 455 | 612 | 1.49e-60 | 204 |
| Msa1100140 | AT2G01420.1 | 47.849 | 186 | 86 | 3 | 1 | 177 | 21 | 204 | 3.12e-45 | 163 |
| Msa1100140 | AT5G57090.2 | 52.500 | 200 | 86 | 2 | 146 | 337 | 349 | 547 | 3.40e-60 | 202 |
| Msa1100140 | AT5G57090.2 | 64.516 | 62 | 22 | 0 | 81 | 142 | 1 | 62 | 5.71e-17 | 82.0 |
| Msa1100140 | AT5G57090.1 | 52.500 | 200 | 86 | 2 | 146 | 337 | 449 | 647 | 1.42e-59 | 202 |
| Msa1100140 | AT5G57090.1 | 48.901 | 182 | 80 | 2 | 1 | 175 | 21 | 196 | 1.44e-45 | 164 |
| Msa1100140 | AT1G23080.1 | 62.025 | 158 | 60 | 0 | 180 | 337 | 462 | 619 | 9.01e-58 | 197 |
| Msa1100140 | AT1G23080.1 | 58.696 | 138 | 57 | 0 | 1 | 138 | 21 | 158 | 7.61e-46 | 165 |
| Msa1100140 | AT1G23080.3 | 62.025 | 158 | 60 | 0 | 180 | 337 | 458 | 615 | 9.88e-58 | 197 |
| Msa1100140 | AT1G23080.3 | 58.696 | 138 | 57 | 0 | 1 | 138 | 21 | 158 | 8.13e-46 | 165 |
| Msa1100140 | AT1G23080.4 | 62.025 | 158 | 60 | 0 | 180 | 337 | 458 | 615 | 9.88e-58 | 197 |
| Msa1100140 | AT1G23080.4 | 58.696 | 138 | 57 | 0 | 1 | 138 | 21 | 158 | 8.13e-46 | 165 |
| Msa1100140 | AT1G70940.1 | 53.431 | 204 | 88 | 3 | 137 | 337 | 441 | 640 | 3.10e-57 | 196 |
| Msa1100140 | AT1G70940.1 | 57.971 | 138 | 58 | 0 | 1 | 138 | 21 | 158 | 3.14e-45 | 163 |
| Msa1100140 | AT1G73590.1 | 62.658 | 158 | 59 | 0 | 180 | 337 | 465 | 622 | 9.93e-57 | 194 |
| Msa1100140 | AT1G73590.1 | 50.562 | 178 | 85 | 2 | 1 | 176 | 21 | 197 | 2.29e-47 | 169 |
| Msa1100140 | AT1G77110.1 | 46.377 | 207 | 103 | 2 | 138 | 337 | 365 | 570 | 1.86e-56 | 192 |
| Msa1100140 | AT1G77110.1 | 47.059 | 187 | 89 | 3 | 1 | 177 | 21 | 207 | 1.18e-44 | 161 |
| Msa1100140 | AT1G77110.2 | 47.027 | 185 | 90 | 2 | 138 | 315 | 365 | 548 | 4.17e-49 | 172 |
| Msa1100140 | AT1G77110.2 | 46.524 | 187 | 90 | 3 | 1 | 177 | 21 | 207 | 1.60e-44 | 160 |
| Msa1100140 | AT1G23080.2 | 58.696 | 138 | 57 | 0 | 1 | 138 | 21 | 158 | 2.55e-46 | 165 |
| Msa1100140 | AT1G23080.2 | 61.017 | 59 | 23 | 0 | 180 | 238 | 458 | 516 | 5.53e-17 | 82.0 |
| Msa1100140 | AT2G01420.3 | 56.522 | 138 | 60 | 0 | 1 | 138 | 21 | 158 | 1.56e-45 | 162 |
| Msa1100140 | AT2G01420.3 | 57.627 | 59 | 25 | 0 | 180 | 238 | 459 | 517 | 1.53e-16 | 80.9 |
Find 71 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGAGCACCCTACAAATT+AGG | 0.147063 | 7_3:-29583851 | Msa1100140:three_prime_UTR |
| TAAATTATAGTATGGATTTA+TGG | 0.154737 | 7_3:-29583911 | Msa1100140:three_prime_UTR |
| CTTCCTAATACTTTGATTCT+TGG | 0.167604 | 7_3:-29586827 | Msa1100140:CDS |
| TAATTTATCAGGTCTGTTTA+TGG | 0.187634 | 7_3:-29585152 | Msa1100140:intron |
| CATTGCCTTGCCAGTGGAAT+TGG | 0.236586 | 7_3:-29584090 | Msa1100140:CDS |
| AACACATTTGCTTCATTAAT+AGG | 0.236738 | 7_3:-29585740 | Msa1100140:CDS |
| CACAGTTATAAATTATAGTA+TGG | 0.269758 | 7_3:-29583919 | Msa1100140:three_prime_UTR |
| ATTCCAAGAATCAAAGTATT+AGG | 0.293610 | 7_3:+29586824 | None:intergenic |
| CTTGTTAATAGGATCTTGTT+AGG | 0.307687 | 7_3:-29584119 | Msa1100140:intron |
| ATTGAATGATTGATTACTTC+AGG | 0.318426 | 7_3:+29585412 | None:intergenic |
| TTAGAGCACCCTACAAATTA+GGG | 0.325393 | 7_3:-29583850 | Msa1100140:three_prime_UTR |
| ATTAATGAAGCAAATGTGTT+TGG | 0.329402 | 7_3:+29585743 | None:intergenic |
| TTTGGTCAAGCATACAATTC+AGG | 0.336596 | 7_3:-29585712 | Msa1100140:intron |
| ACAGCAGTTATTAAGATTAG+TGG | 0.347075 | 7_3:-29586896 | Msa1100140:CDS |
| GGTTTGAAATGGATTATAAC+TGG | 0.347389 | 7_3:-29586866 | Msa1100140:CDS |
| CTTCATTAATAGGCATCATT+TGG | 0.353483 | 7_3:-29585730 | Msa1100140:CDS |
| GTTTAAAGTTGCAATAGTTC+AGG | 0.371056 | 7_3:-29585005 | Msa1100140:intron |
| ACTTCCTCTTAGCACTTTGA+AGG | 0.375893 | 7_3:-29584061 | Msa1100140:exon |
| GTGGTAAAGGTGGTTTGAAA+TGG | 0.378352 | 7_3:-29586877 | Msa1100140:CDS |
| ATTGTTAAAAGCAATGTATA+AGG | 0.393383 | 7_3:-29586798 | Msa1100140:CDS |
| AGGACCTGCTCTAATGGCTT+TGG | 0.407779 | 7_3:-29585059 | Msa1100140:CDS |
| GCTTTGGCATCCATTGTCAT+TGG | 0.422465 | 7_3:-29585043 | Msa1100140:CDS |
| GTTGGTAGGACCTGCTCTAA+TGG | 0.425327 | 7_3:-29585065 | Msa1100140:CDS |
| TTCCCCACTGTGACAAGAAT+GGG | 0.427784 | 7_3:+29585782 | None:intergenic |
| CTATTGTCCAATGGAGGTCT+TGG | 0.428281 | 7_3:-29585385 | Msa1100140:CDS |
| GAACCATTTCACTGAGACAT+AGG | 0.430638 | 7_3:+29587084 | None:intergenic |
| TTCACACAAGAACAATGTTC+AGG | 0.435017 | 7_3:-29587055 | Msa1100140:CDS |
| ATTGCAACCATTGTATTCCT+TGG | 0.437294 | 7_3:+29585100 | None:intergenic |
| CTTCCCCACTGTGACAAGAA+TGG | 0.439357 | 7_3:+29585781 | None:intergenic |
| AGGAATACAATGGTTGCAAT+TGG | 0.442619 | 7_3:-29585097 | Msa1100140:CDS |
| ACACAGCAACCCTAATTTGT+AGG | 0.450231 | 7_3:+29583841 | None:intergenic |
| TTTGTACCTGTGTCTTGTGA+TGG | 0.450346 | 7_3:+29586662 | None:intergenic |
| TAGCCTATGTCTCAGTGAAA+TGG | 0.450425 | 7_3:-29587087 | Msa1100140:CDS |
| AGGTGCAGATAGCATGTTCT+TGG | 0.455822 | 7_3:+29586685 | None:intergenic |
| GTTATTAAGATTAGTGGTAA+AGG | 0.462814 | 7_3:-29586890 | Msa1100140:CDS |
| TTGTGTTAAATATATATGAT+AGG | 0.468517 | 7_3:-29584037 | Msa1100140:three_prime_UTR |
| TACAAGTAAATTTATTATTG+TGG | 0.475225 | 7_3:-29583815 | None:intergenic |
| TACTTACGCAGTGCTTAAGA+TGG | 0.479644 | 7_3:+29584218 | None:intergenic |
| GGTATGGCAATGTTCAGCTT+AGG | 0.482963 | 7_3:-29585364 | Msa1100140:intron |
| ATGACTTGAAATGATAAAAG+AGG | 0.503088 | 7_3:+29587001 | None:intergenic |
| CACAGCAACCCTAATTTGTA+GGG | 0.505155 | 7_3:+29583842 | None:intergenic |
| CTTCCTCTTAGCACTTTGAA+GGG | 0.507739 | 7_3:-29584060 | Msa1100140:exon |
| CAACCCTTCAAAGTGCTAAG+AGG | 0.511277 | 7_3:+29584057 | None:intergenic |
| TTTCCCATTCTTGTCACAGT+GGG | 0.513118 | 7_3:-29585785 | Msa1100140:CDS |
| TGCCATACCAAGACCTCCAT+TGG | 0.522836 | 7_3:+29585378 | None:intergenic |
| ATTAAGATTAGTGGTAAAGG+TGG | 0.535148 | 7_3:-29586887 | Msa1100140:CDS |
| TGACTTGAAATGATAAAAGA+GGG | 0.540501 | 7_3:+29587002 | None:intergenic |
| TACGCAGTGCTTAAGATGGA+TGG | 0.549725 | 7_3:+29584222 | None:intergenic |
| GAAGAAGATGAAGAACCTGT+TGG | 0.556300 | 7_3:-29585830 | Msa1100140:CDS |
| GTACCTGTGTCTTGTGATGG+AGG | 0.560547 | 7_3:+29586665 | None:intergenic |
| GCATCATAGCATGTGGGCCA+AGG | 0.564036 | 7_3:-29585117 | Msa1100140:CDS |
| GTCCAATGGAGGTCTTGGTA+TGG | 0.572996 | 7_3:-29585380 | Msa1100140:CDS |
| GAAAGCCAATTCCACTGGCA+AGG | 0.580315 | 7_3:+29584085 | None:intergenic |
| AAGTAGAAAGCCAATTCCAC+TGG | 0.581046 | 7_3:+29584080 | None:intergenic |
| GATGCCAAAGCCATTAGAGC+AGG | 0.586131 | 7_3:+29585055 | None:intergenic |
| ATGTTTACTTGAAGGAGAGT+CGG | 0.589183 | 7_3:-29585882 | Msa1100140:intron |
| CAGTCAAGCATCATAGCATG+TGG | 0.594053 | 7_3:-29585124 | Msa1100140:CDS |
| TCAATAGAACTATTGTCCAA+TGG | 0.602732 | 7_3:-29585394 | Msa1100140:CDS |
| CTTTCCCATTCTTGTCACAG+TGG | 0.614609 | 7_3:-29585786 | Msa1100140:CDS |
| AATGCTCATTGCCTTGCCAG+TGG | 0.628295 | 7_3:-29584096 | Msa1100140:CDS |
| GTTTCTTAAACCAATGACAA+TGG | 0.631743 | 7_3:+29585033 | None:intergenic |
| CAGTGCTTAAGATGGATGGA+TGG | 0.644221 | 7_3:+29584226 | None:intergenic |
| TGCAATTGGACTGAAAGTGT+TGG | 0.649176 | 7_3:-29585083 | Msa1100140:CDS |
| ATAGAACTATTGTCCAATGG+AGG | 0.658101 | 7_3:-29585391 | Msa1100140:CDS |
| ATGTGGGCCAAGGAATACAA+TGG | 0.670600 | 7_3:-29585107 | Msa1100140:CDS |
| TGGCAGGCAGCTCTACCACA+AGG | 0.672085 | 7_3:-29584285 | Msa1100140:intron |
| TTCCCATTCTTGTCACAGTG+GGG | 0.685363 | 7_3:-29585784 | Msa1100140:CDS |
| AGTCAAGCATCATAGCATGT+GGG | 0.689134 | 7_3:-29585123 | Msa1100140:CDS |
| GCACCTCCATCACAAGACAC+AGG | 0.697743 | 7_3:-29586668 | Msa1100140:intron |
| ATTGGACTGAAAGTGTTGGT+AGG | 0.716420 | 7_3:-29585079 | Msa1100140:CDS |
| ACAAACGGAACAATTCCTTG+TGG | 0.750583 | 7_3:+29584270 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATAATTTATAACA+AGG | + | chr7_3:29585606-29585625 | None:intergenic | 10.0% |
| !!! | ATTGTTATTTTTCAATTTAA+AGG | + | chr7_3:29586093-29586112 | None:intergenic | 10.0% |
| !!! | TTTTTATTTCACAAATTTAA+AGG | - | chr7_3:29586129-29586148 | Msa1100140:intron | 10.0% |
| !! | ATATCATGTATTAATATTTA+GGG | + | chr7_3:29586599-29586618 | None:intergenic | 10.0% |
| !! | AATATCATGTATTAATATTT+AGG | + | chr7_3:29586600-29586619 | None:intergenic | 10.0% |
| !! | TAAAAAAACACTAATTTATA+GGG | + | chr7_3:29587044-29587063 | None:intergenic | 10.0% |
| !!! | TTTCACTTTTTTTTTATCAA+TGG | - | chr7_3:29584541-29584560 | Msa1100140:intron | 15.0% |
| !! | CTATTAAAATAAGTATGTAA+AGG | + | chr7_3:29584630-29584649 | None:intergenic | 15.0% |
| !! | ATTTAAAAGATATACAATGT+GGG | - | chr7_3:29585629-29585648 | Msa1100140:intron | 15.0% |
| !! | TAGAAACTAAATATTATACA+TGG | - | chr7_3:29585988-29586007 | Msa1100140:intron | 15.0% |
| !! | TGAAAAATAACAATCAATTT+AGG | - | chr7_3:29586099-29586118 | Msa1100140:intron | 15.0% |
| !! | GAAAAATAACAATCAATTTA+GGG | - | chr7_3:29586100-29586119 | Msa1100140:intron | 15.0% |
| !!! | GATCAATAATTTTTTAGTAA+AGG | + | chr7_3:29586287-29586306 | None:intergenic | 15.0% |
| !! | AGAAATAGATTATAGTAATT+TGG | + | chr7_3:29586368-29586387 | None:intergenic | 15.0% |
| !! | TAAAACAAAAATGAAAGAAA+TGG | - | chr7_3:29586405-29586424 | Msa1100140:intron | 15.0% |
| !! | CTATACTTATATATATAACA+TGG | - | chr7_3:29586515-29586534 | Msa1100140:intron | 15.0% |
| !! | TTGTGTTAAATATATATGAT+AGG | - | chr7_3:29586874-29586893 | Msa1100140:CDS | 15.0% |
| !! | TAAATTATAGTATGGATTTA+TGG | - | chr7_3:29587000-29587019 | Msa1100140:CDS | 15.0% |
| !! | CTAAAAAAACACTAATTTAT+AGG | + | chr7_3:29587045-29587064 | None:intergenic | 15.0% |
| !!! | TTATACATTGCTTTTAACAA+TGG | + | chr7_3:29584114-29584133 | None:intergenic | 20.0% |
| !! | ATTGTTAAAAGCAATGTATA+AGG | - | chr7_3:29584113-29584132 | Msa1100140:intron | 20.0% |
| !! | ATCTTATCTTACAATGTATA+AGG | - | chr7_3:29584334-29584353 | Msa1100140:intron | 20.0% |
| !!! | AAGGATTTTGATTAGTAAAA+AGG | - | chr7_3:29584353-29584372 | Msa1100140:intron | 20.0% |
| !! | AAAACACAAACAAAAAATAC+AGG | + | chr7_3:29584441-29584460 | None:intergenic | 20.0% |
| !!! | CATACTTATTTTAATAGTTC+TGG | - | chr7_3:29584633-29584652 | Msa1100140:intron | 20.0% |
| !! | CACTATTAAAATATATGTTC+TGG | + | chr7_3:29584821-29584840 | None:intergenic | 20.0% |
| !!! | CAGAACATATATTTTAATAG+TGG | - | chr7_3:29584819-29584838 | Msa1100140:intron | 20.0% |
| !!! | AACATATATTTTAATAGTGG+TGG | - | chr7_3:29584822-29584841 | Msa1100140:intron | 20.0% |
| !!! | CTTATCATAGTTTTAAATTG+TGG | - | chr7_3:29584872-29584891 | Msa1100140:intron | 20.0% |
| !! | TATATAATTTCCTTATCACA+AGG | - | chr7_3:29585412-29585431 | Msa1100140:CDS | 20.0% |
| !! | TATAACAAGGAAGAAAAATA+TGG | + | chr7_3:29585593-29585612 | None:intergenic | 20.0% |
| !! | GATTTAAAAGATATACAATG+TGG | - | chr7_3:29585628-29585647 | Msa1100140:intron | 20.0% |
| !! | AATCTATCATTACAATTTCA+AGG | + | chr7_3:29586033-29586052 | None:intergenic | 20.0% |
| !! | TATTCTTTAGCAAAAACAAA+CGG | + | chr7_3:29586659-29586678 | None:intergenic | 20.0% |
| !!! | TGTTTTTGTTTCTTGTTAAT+AGG | - | chr7_3:29586781-29586800 | Msa1100140:CDS | 20.0% |
| !! | CACAGTTATAAATTATAGTA+TGG | - | chr7_3:29586992-29587011 | Msa1100140:CDS | 20.0% |
| ! | TGACTTGAAATGATAAAAGA+GGG | + | chr7_3:29583912-29583931 | None:intergenic | 25.0% |
| ! | ATGACTTGAAATGATAAAAG+AGG | + | chr7_3:29583913-29583932 | None:intergenic | 25.0% |
| ! | GTTATTAAGATTAGTGGTAA+AGG | - | chr7_3:29584021-29584040 | Msa1100140:three_prime_UTR | 25.0% |
| !! | ATTCCAAGAATCAAAGTATT+AGG | + | chr7_3:29584090-29584109 | None:intergenic | 25.0% |
| ! | ACATGTTTCAACTTAGTATT+TGG | + | chr7_3:29584513-29584532 | None:intergenic | 25.0% |
| !! | AGTTCATTTTCAAATGTTGT+TGG | + | chr7_3:29584584-29584603 | None:intergenic | 25.0% |
| !! | CTCAATTTGATAATACACTT+TGG | + | chr7_3:29584685-29584704 | None:intergenic | 25.0% |
| ! | GTGTATTATCAAATTGAGAT+TGG | - | chr7_3:29584687-29584706 | Msa1100140:intron | 25.0% |
| ! | TATCAAATTGAGATTGGATA+TGG | - | chr7_3:29584693-29584712 | Msa1100140:intron | 25.0% |
| ! | AGTACTATAAACAATCAATG+TGG | - | chr7_3:29584793-29584812 | Msa1100140:intron | 25.0% |
| ! | GTACTATAAACAATCAATGT+GGG | - | chr7_3:29584794-29584813 | Msa1100140:intron | 25.0% |
| !!! | ATATTTTAATAGTGGTGGAA+AGG | - | chr7_3:29584827-29584846 | Msa1100140:intron | 25.0% |
| !!! | TATTTTAATAGTGGTGGAAA+GGG | - | chr7_3:29584828-29584847 | Msa1100140:intron | 25.0% |
| ! | ATTAATGAAGCAAATGTGTT+TGG | + | chr7_3:29585171-29585190 | None:intergenic | 25.0% |
| ! | AACACATTTGCTTCATTAAT+AGG | - | chr7_3:29585171-29585190 | Msa1100140:intron | 25.0% |
| ! | CGTGTATAGTGTATAAAAAA+AGG | + | chr7_3:29585265-29585284 | None:intergenic | 25.0% |
| ! | TAAGGCTATAAATAACAACT+AGG | - | chr7_3:29585445-29585464 | Msa1100140:intron | 25.0% |
| !! | AACTAGGTATACATATTTTC+AGG | - | chr7_3:29585461-29585480 | Msa1100140:intron | 25.0% |
| ! | ATTGAATGATTGATTACTTC+AGG | + | chr7_3:29585502-29585521 | None:intergenic | 25.0% |
| !!! | ATTTTTAGAGTTGCAGTAAA+AGG | - | chr7_3:29585709-29585728 | Msa1100140:intron | 25.0% |
| !! | TCTTTTTGTGTGTTTATTGA+TGG | - | chr7_3:29585732-29585751 | Msa1100140:CDS | 25.0% |
| !! | TTGATGGATGTTAATTTATC+AGG | - | chr7_3:29585748-29585767 | Msa1100140:CDS | 25.0% |
| ! | TAATTTATCAGGTCTGTTTA+TGG | - | chr7_3:29585759-29585778 | Msa1100140:CDS | 25.0% |
| !!! | TTGCTGTTTCTCAAATTTAA+AGG | + | chr7_3:29586064-29586083 | None:intergenic | 25.0% |
| !! | TGATCAACTTTTACAATTTC+AGG | - | chr7_3:29586159-29586178 | Msa1100140:intron | 25.0% |
| !! | GATCAACTTTTACAATTTCA+GGG | - | chr7_3:29586160-29586179 | Msa1100140:intron | 25.0% |
| ! | ATTGTTGGATTAAGATCAAA+TGG | + | chr7_3:29586542-29586561 | None:intergenic | 25.0% |
| ! | ATCATCATGTTAGAAATTGT+TGG | + | chr7_3:29586557-29586576 | None:intergenic | 25.0% |
| ! | TAATACATGATATTTGCATG+TGG | - | chr7_3:29586606-29586625 | Msa1100140:intron | 25.0% |
| ! | CATTTTGTAGATATTGTTGG+AGG | + | chr7_3:29583938-29583957 | None:intergenic | 30.0% |
| ! | GCTCATTTTGTAGATATTGT+TGG | + | chr7_3:29583941-29583960 | None:intergenic | 30.0% |
| ACAGCAGTTATTAAGATTAG+TGG | - | chr7_3:29584015-29584034 | Msa1100140:three_prime_UTR | 30.0% | |
| ATTAAGATTAGTGGTAAAGG+TGG | - | chr7_3:29584024-29584043 | Msa1100140:three_prime_UTR | 30.0% | |
| !! | GGTTTGAAATGGATTATAAC+TGG | - | chr7_3:29584045-29584064 | Msa1100140:exon | 30.0% |
| CTTCCTAATACTTTGATTCT+TGG | - | chr7_3:29584084-29584103 | Msa1100140:CDS | 30.0% | |
| ! | TTTTCTTGCAGAGTATGATT+TGG | - | chr7_3:29584166-29584185 | Msa1100140:intron | 30.0% |
| AAATACAGGAGACTTGATTA+CGG | + | chr7_3:29584427-29584446 | None:intergenic | 30.0% | |
| ACTTAGTATTTGGTATTCCT+CGG | + | chr7_3:29584503-29584522 | None:intergenic | 30.0% | |
| !! | CACTTTGGTTCATTTTCAAA+TGG | + | chr7_3:29584670-29584689 | None:intergenic | 30.0% |
| !! | ATGGTTCTAAATTGCATTTG+TGG | + | chr7_3:29584988-29585007 | None:intergenic | 30.0% |
| AGTTCCTAATGTTTACTTGA+AGG | - | chr7_3:29585021-29585040 | Msa1100140:CDS | 30.0% | |
| !!! | ATTTTGCTTTTTGTTCCAAC+AGG | + | chr7_3:29585099-29585118 | None:intergenic | 30.0% |
| CTTCATTAATAGGCATCATT+TGG | - | chr7_3:29585181-29585200 | Msa1100140:intron | 30.0% | |
| ATCTCTCACAAATATCTAGA+TGG | + | chr7_3:29585303-29585322 | None:intergenic | 30.0% | |
| ATTATGATCTCCTTGTGATA+AGG | + | chr7_3:29585425-29585444 | None:intergenic | 30.0% | |
| TCACAAGGAGATCATAATTA+AGG | - | chr7_3:29585427-29585446 | Msa1100140:CDS | 30.0% | |
| !! | TAGGTATACATATTTTCAGG+TGG | - | chr7_3:29585464-29585483 | Msa1100140:intron | 30.0% |
| !!! | AGGTATACATATTTTCAGGT+GGG | - | chr7_3:29585465-29585484 | Msa1100140:intron | 30.0% |
| TCAATAGAACTATTGTCCAA+TGG | - | chr7_3:29585517-29585536 | Msa1100140:intron | 30.0% | |
| GTTTCTTAAACCAATGACAA+TGG | + | chr7_3:29585881-29585900 | None:intergenic | 30.0% | |
| ! | GTTTAAAGTTGCAATAGTTC+AGG | - | chr7_3:29585906-29585925 | Msa1100140:intron | 30.0% |
| GTGTATTTACTCTTTACGAA+TGG | - | chr7_3:29586191-29586210 | Msa1100140:intron | 30.0% | |
| ATTTACTCTTTACGAATGGT+TGG | - | chr7_3:29586195-29586214 | Msa1100140:intron | 30.0% | |
| TCCAATCAATTCGACTTTAA+CGG | + | chr7_3:29586248-29586267 | None:intergenic | 30.0% | |
| ATCAAACTTTACTTACCTTC+CGG | - | chr7_3:29586335-29586354 | Msa1100140:intron | 30.0% | |
| ! | ATAGTAATTTGGAGTTCAAC+CGG | + | chr7_3:29586357-29586376 | None:intergenic | 30.0% |
| CTTGTTAATAGGATCTTGTT+AGG | - | chr7_3:29586792-29586811 | Msa1100140:CDS | 30.0% | |
| TTCACACAAGAACAATGTTC+AGG | - | chr7_3:29583856-29583875 | Msa1100140:three_prime_UTR | 35.0% | |
| CAATCAATTACATCAGACAC+AGG | - | chr7_3:29584283-29584302 | Msa1100140:intron | 35.0% | |
| TACTTTCGAACCAAAGTGTA+TGG | - | chr7_3:29584472-29584491 | Msa1100140:intron | 35.0% | |
| ! | AAGTATGTAAAGGCACACTT+TGG | + | chr7_3:29584620-29584639 | None:intergenic | 35.0% |
| TTATATTGCAAGCGCAATTG+CGG | + | chr7_3:29584905-29584924 | None:intergenic | 35.0% | |
| CAATTGCGCTTGCAATATAA+AGG | - | chr7_3:29584905-29584924 | Msa1100140:intron | 35.0% | |
| CTCTCCTTCAAGTAAACATT+AGG | + | chr7_3:29585028-29585047 | None:intergenic | 35.0% | |
| ATGTTTACTTGAAGGAGAGT+CGG | - | chr7_3:29585029-29585048 | Msa1100140:CDS | 35.0% | |
| TTTGGTCAAGCATACAATTC+AGG | - | chr7_3:29585199-29585218 | Msa1100140:intron | 35.0% | |
| TCTAGATGGTGAGATCTAAT+TGG | + | chr7_3:29585289-29585308 | None:intergenic | 35.0% | |
| !!! | GGTATACATATTTTCAGGTG+GGG | - | chr7_3:29585466-29585485 | Msa1100140:intron | 35.0% |
| !!! | GTATACATATTTTCAGGTGG+GGG | - | chr7_3:29585467-29585486 | Msa1100140:intron | 35.0% |
| ATAGAACTATTGTCCAATGG+AGG | - | chr7_3:29585520-29585539 | Msa1100140:intron | 35.0% | |
| ATTGCAACCATTGTATTCCT+TGG | + | chr7_3:29585814-29585833 | None:intergenic | 35.0% | |
| AGGAATACAATGGTTGCAAT+TGG | - | chr7_3:29585814-29585833 | Msa1100140:CDS | 35.0% | |
| TCCGTTAAAGTCGAATTGAT+TGG | - | chr7_3:29586244-29586263 | Msa1100140:intron | 35.0% | |
| ! | TTTAGAGCACCCTACAAATT+AGG | - | chr7_3:29587060-29587079 | Msa1100140:CDS | 35.0% |
| ! | TTAGAGCACCCTACAAATTA+GGG | - | chr7_3:29587061-29587080 | Msa1100140:CDS | 35.0% |
| TAGCCTATGTCTCAGTGAAA+TGG | - | chr7_3:29583824-29583843 | Msa1100140:three_prime_UTR | 40.0% | |
| GAACCATTTCACTGAGACAT+AGG | + | chr7_3:29583830-29583849 | None:intergenic | 40.0% | |
| GTGGTAAAGGTGGTTTGAAA+TGG | - | chr7_3:29584034-29584053 | Msa1100140:three_prime_UTR | 40.0% | |
| TTTGTACCTGTGTCTTGTGA+TGG | + | chr7_3:29584252-29584271 | None:intergenic | 40.0% | |
| GCTGGATAAGTAGGCATAAT+TGG | - | chr7_3:29584394-29584413 | Msa1100140:intron | 40.0% | |
| ! | AATAGTGGTGGAAAGGGAAA+TGG | - | chr7_3:29584834-29584853 | Msa1100140:intron | 40.0% |
| GGAACTGAATGTAAGAAGCA+TGG | + | chr7_3:29585007-29585026 | None:intergenic | 40.0% | |
| GAAGAAGATGAAGAACCTGT+TGG | - | chr7_3:29585081-29585100 | Msa1100140:CDS | 40.0% | |
| TTTCCCATTCTTGTCACAGT+GGG | - | chr7_3:29585126-29585145 | Msa1100140:CDS | 40.0% | |
| AGTCAAGCATCATAGCATGT+GGG | - | chr7_3:29585788-29585807 | Msa1100140:CDS | 40.0% | |
| ! | TGCAATTGGACTGAAAGTGT+TGG | - | chr7_3:29585828-29585847 | Msa1100140:CDS | 40.0% |
| !! | ATTGGACTGAAAGTGTTGGT+AGG | - | chr7_3:29585832-29585851 | Msa1100140:CDS | 40.0% |
| AATGGTTGGACTCAAGTACT+TGG | - | chr7_3:29586209-29586228 | Msa1100140:intron | 40.0% | |
| ATGGTTGGACTCAAGTACTT+GGG | - | chr7_3:29586210-29586229 | Msa1100140:intron | 40.0% | |
| ! | TAATTTGGAGTTCAACCGGA+AGG | + | chr7_3:29586353-29586372 | None:intergenic | 40.0% |
| ACATGATATTTGCATGTGGC+AGG | - | chr7_3:29586610-29586629 | Msa1100140:intron | 40.0% | |
| ACAAACGGAACAATTCCTTG+TGG | + | chr7_3:29586644-29586663 | None:intergenic | 40.0% | |
| TACTTACGCAGTGCTTAAGA+TGG | + | chr7_3:29586696-29586715 | None:intergenic | 40.0% | |
| AAGTAGAAAGCCAATTCCAC+TGG | + | chr7_3:29586834-29586853 | None:intergenic | 40.0% | |
| ACTTCCTCTTAGCACTTTGA+AGG | - | chr7_3:29586850-29586869 | Msa1100140:CDS | 40.0% | |
| CTTCCTCTTAGCACTTTGAA+GGG | - | chr7_3:29586851-29586870 | Msa1100140:CDS | 40.0% | |
| ! | CACAGCAACCCTAATTTGTA+GGG | + | chr7_3:29587072-29587091 | None:intergenic | 40.0% |
| ! | ACACAGCAACCCTAATTTGT+AGG | + | chr7_3:29587073-29587092 | None:intergenic | 40.0% |
| AGGTGCAGATAGCATGTTCT+TGG | + | chr7_3:29584229-29584248 | None:intergenic | 45.0% | |
| CTACTTATCCAGCAGTAGAG+CGG | + | chr7_3:29584387-29584406 | None:intergenic | 45.0% | |
| GGAGACTTGATTACGGAGTT+CGG | + | chr7_3:29584420-29584439 | None:intergenic | 45.0% | |
| CTCGGATAGACCATACACTT+TGG | + | chr7_3:29584485-29584504 | None:intergenic | 45.0% | |
| CAAAGTGTATGGTCTATCCG+AGG | - | chr7_3:29584483-29584502 | Msa1100140:intron | 45.0% | |
| GTGAGTTGTGACTGCAATTG+TGG | - | chr7_3:29584942-29584961 | Msa1100140:intron | 45.0% | |
| CTTTCCCATTCTTGTCACAG+TGG | - | chr7_3:29585125-29585144 | Msa1100140:CDS | 45.0% | |
| TTCCCATTCTTGTCACAGTG+GGG | - | chr7_3:29585127-29585146 | Msa1100140:CDS | 45.0% | |
| TTCCCCACTGTGACAAGAAT+GGG | + | chr7_3:29585132-29585151 | None:intergenic | 45.0% | |
| ACCAACGCTATCGTGTGTAA+AGG | + | chr7_3:29585238-29585257 | None:intergenic | 45.0% | |
| CTATTGTCCAATGGAGGTCT+TGG | - | chr7_3:29585526-29585545 | Msa1100140:intron | 45.0% | |
| GGTATGGCAATGTTCAGCTT+AGG | - | chr7_3:29585547-29585566 | Msa1100140:intron | 45.0% | |
| CAGTCAAGCATCATAGCATG+TGG | - | chr7_3:29585787-29585806 | Msa1100140:CDS | 45.0% | |
| ATGTGGGCCAAGGAATACAA+TGG | - | chr7_3:29585804-29585823 | Msa1100140:CDS | 45.0% | |
| GCTTTGGCATCCATTGTCAT+TGG | - | chr7_3:29585868-29585887 | Msa1100140:CDS | 45.0% | |
| CAGTGCTTAAGATGGATGGA+TGG | + | chr7_3:29586688-29586707 | None:intergenic | 45.0% | |
| TACGCAGTGCTTAAGATGGA+TGG | + | chr7_3:29586692-29586711 | None:intergenic | 45.0% | |
| ! | CAACCCTTCAAAGTGCTAAG+AGG | + | chr7_3:29586857-29586876 | None:intergenic | 45.0% |
| GTACCTGTGTCTTGTGATGG+AGG | + | chr7_3:29584249-29584268 | None:intergenic | 50.0% | |
| TATTGCATCCGCTCTACTGC+TGG | - | chr7_3:29584376-29584395 | Msa1100140:intron | 50.0% | |
| CGCTCTACTGCTGGATAAGT+AGG | - | chr7_3:29584385-29584404 | Msa1100140:intron | 50.0% | |
| CTTCCCCACTGTGACAAGAA+TGG | + | chr7_3:29585133-29585152 | None:intergenic | 50.0% | |
| GCCTTTACACACGATAGCGT+TGG | - | chr7_3:29585234-29585253 | Msa1100140:intron | 50.0% | |
| GTCCAATGGAGGTCTTGGTA+TGG | - | chr7_3:29585531-29585550 | Msa1100140:intron | 50.0% | |
| TGCCATACCAAGACCTCCAT+TGG | + | chr7_3:29585536-29585555 | None:intergenic | 50.0% | |
| ! | GTTGGTAGGACCTGCTCTAA+TGG | - | chr7_3:29585846-29585865 | Msa1100140:CDS | 50.0% |
| AGGACCTGCTCTAATGGCTT+TGG | - | chr7_3:29585852-29585871 | Msa1100140:CDS | 50.0% | |
| GATGCCAAAGCCATTAGAGC+AGG | + | chr7_3:29585859-29585878 | None:intergenic | 50.0% | |
| AATGCTCATTGCCTTGCCAG+TGG | - | chr7_3:29586815-29586834 | Msa1100140:CDS | 50.0% | |
| CATTGCCTTGCCAGTGGAAT+TGG | - | chr7_3:29586821-29586840 | Msa1100140:CDS | 50.0% | |
| GAAAGCCAATTCCACTGGCA+AGG | + | chr7_3:29586829-29586848 | None:intergenic | 50.0% | |
| GCACCTCCATCACAAGACAC+AGG | - | chr7_3:29584243-29584262 | Msa1100140:CDS | 55.0% | |
| GCATCATAGCATGTGGGCCA+AGG | - | chr7_3:29585794-29585813 | Msa1100140:CDS | 55.0% | |
| TGGCAGGCAGCTCTACCACA+AGG | - | chr7_3:29586626-29586645 | Msa1100140:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 29583817 | 29587116 | 29583817 | ID=Msa1100140;Name=Msa1100140 |
| chr7_3 | mRNA | 29583817 | 29587116 | 29583817 | ID=Msa1100140-mRNA-1;Parent=Msa1100140;Name=Msa1100140-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|0.85|1|0.83|0.71|7|200|337 |
| chr7_3 | exon | 29583817 | 29583954 | 29583817 | ID=Msa1100140-mRNA-1:exon:6282;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29584002 | 29584130 | 29584002 | ID=Msa1100140-mRNA-1:exon:6281;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29584225 | 29584301 | 29584225 | ID=Msa1100140-mRNA-1:exon:6280;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29585006 | 29585163 | 29585006 | ID=Msa1100140-mRNA-1:exon:6279;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29585365 | 29585450 | 29585365 | ID=Msa1100140-mRNA-1:exon:6278;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29585713 | 29585890 | 29585713 | ID=Msa1100140-mRNA-1:exon:6277;Parent=Msa1100140-mRNA-1 |
| chr7_3 | exon | 29586669 | 29587116 | 29586669 | ID=Msa1100140-mRNA-1:exon:6276;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29586669 | 29587116 | 29586669 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29585713 | 29585890 | 29585713 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29585365 | 29585450 | 29585365 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29585006 | 29585163 | 29585006 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29584225 | 29584301 | 29584225 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | CDS | 29584064 | 29584130 | 29584064 | ID=Msa1100140-mRNA-1:cds;Parent=Msa1100140-mRNA-1 |
| chr7_3 | three_prime_UTR | 29584002 | 29584063 | 29584002 | ID=Msa1100140-mRNA-1:three_prime_utr;Parent=Msa1100140-mRNA-1 |
| chr7_3 | three_prime_UTR | 29583817 | 29583954 | 29583817 | ID=Msa1100140-mRNA-1:three_prime_utr;Parent=Msa1100140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
