Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1144150 | XP_013458436.1 | 84.743 | 544 | 49 | 6 | 1 | 510 | 987 | 1530 | 0.0 | 890 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1144150 | sp|F4K5J1|MYO17_ARATH | 67.587 | 543 | 139 | 7 | 2 | 510 | 988 | 1527 | 0.0 | 678 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1144150 | A0A072US24 | 84.743 | 544 | 49 | 6 | 1 | 510 | 987 | 1530 | 0.0 | 890 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0072710 | Msa1144150 | 0.805847 | 1.095536e-49 | -8.615850e-47 |
Msa0219140 | Msa1144150 | 0.800108 | 1.682560e-48 | -8.615850e-47 |
Msa1030380 | Msa1144150 | -0.818200 | 2.218796e-52 | -8.615850e-47 |
Msa1069390 | Msa1144150 | -0.816358 | 5.761969e-52 | -8.615850e-47 |
Msa0259830 | Msa1144150 | 0.800188 | 1.620161e-48 | -8.615850e-47 |
Msa1144120 | Msa1144150 | 0.869185 | 3.742874e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1144150 | MtrunA17_Chr4g0070771 | 84.743 | 544 | 49 | 6 | 1 | 510 | 987 | 1530 | 0.0 | 890 |
Msa1144150 | MtrunA17_Chr1g0183001 | 46.529 | 533 | 241 | 14 | 5 | 505 | 991 | 1511 | 2.27e-140 | 440 |
Msa1144150 | MtrunA17_Chr7g0262581 | 44.168 | 523 | 255 | 11 | 6 | 506 | 1002 | 1509 | 2.91e-127 | 404 |
Msa1144150 | MtrunA17_Chr2g0309291 | 42.342 | 555 | 259 | 13 | 1 | 506 | 1032 | 1574 | 6.71e-126 | 402 |
Msa1144150 | MtrunA17_Chr3g0136351 | 45.036 | 413 | 193 | 7 | 118 | 508 | 32 | 432 | 3.48e-114 | 344 |
Msa1144150 | MtrunA17_Chr1g0151061 | 41.569 | 510 | 232 | 13 | 36 | 505 | 1028 | 1511 | 2.82e-107 | 350 |
Msa1144150 | MtrunA17_Chr7g0274371 | 56.090 | 312 | 102 | 7 | 47 | 331 | 13 | 316 | 3.50e-98 | 299 |
Msa1144150 | MtrunA17_Chr7g0274381 | 63.243 | 185 | 47 | 4 | 333 | 510 | 43 | 213 | 1.69e-76 | 239 |
Msa1144150 | MtrunA17_Chr1g0164261 | 44.856 | 243 | 108 | 6 | 239 | 469 | 27 | 255 | 3.68e-66 | 214 |
Msa1144150 | MtrunA17_Chr1g0164241 | 42.735 | 117 | 51 | 2 | 353 | 469 | 1 | 101 | 1.83e-27 | 105 |
Msa1144150 | MtrunA17_Chr1g0164251 | 36.283 | 113 | 52 | 3 | 118 | 219 | 6 | 109 | 1.94e-14 | 69.7 |
Msa1144150 | MtrunA17_Chr1g0164271 | 35.833 | 120 | 61 | 3 | 109 | 219 | 909 | 1021 | 1.81e-12 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1144150 | AT5G20490.3 | 67.587 | 543 | 139 | 7 | 2 | 510 | 922 | 1461 | 0.0 | 679 |
Msa1144150 | AT5G20490.1 | 67.587 | 543 | 139 | 7 | 2 | 510 | 987 | 1526 | 0.0 | 679 |
Msa1144150 | AT5G20490.2 | 67.587 | 543 | 139 | 7 | 2 | 510 | 988 | 1527 | 0.0 | 678 |
Msa1144150 | AT1G17580.1 | 59.963 | 537 | 171 | 11 | 8 | 510 | 994 | 1520 | 0.0 | 601 |
Msa1144150 | AT1G54560.2 | 59.510 | 531 | 177 | 12 | 7 | 510 | 1007 | 1526 | 0.0 | 587 |
Msa1144150 | AT1G54560.1 | 59.510 | 531 | 177 | 12 | 7 | 510 | 1010 | 1529 | 0.0 | 587 |
Msa1144150 | AT1G08730.2 | 62.048 | 498 | 146 | 10 | 47 | 510 | 1042 | 1530 | 0.0 | 560 |
Msa1144150 | AT1G08730.1 | 62.048 | 498 | 146 | 10 | 47 | 510 | 1050 | 1538 | 0.0 | 559 |
Msa1144150 | AT1G04160.1 | 43.478 | 529 | 249 | 14 | 5 | 505 | 993 | 1499 | 2.56e-122 | 391 |
Msa1144150 | AT2G31900.3 | 43.462 | 520 | 228 | 14 | 47 | 506 | 781 | 1294 | 2.41e-120 | 383 |
Msa1144150 | AT2G31900.5 | 43.462 | 520 | 228 | 14 | 47 | 506 | 924 | 1437 | 1.11e-119 | 383 |
Msa1144150 | AT2G31900.4 | 43.654 | 520 | 226 | 13 | 47 | 506 | 1039 | 1551 | 1.27e-119 | 384 |
Msa1144150 | AT2G31900.1 | 43.654 | 520 | 226 | 13 | 47 | 506 | 1039 | 1551 | 1.27e-119 | 384 |
Msa1144150 | AT2G31900.2 | 43.462 | 520 | 228 | 14 | 47 | 506 | 1039 | 1552 | 7.77e-119 | 382 |
Msa1144150 | AT4G28710.1 | 45.549 | 483 | 229 | 13 | 47 | 506 | 1045 | 1516 | 4.18e-118 | 380 |
Msa1144150 | AT5G43900.1 | 44.332 | 494 | 235 | 14 | 36 | 505 | 1027 | 1504 | 7.47e-113 | 365 |
Msa1144150 | AT5G43900.2 | 44.332 | 494 | 235 | 14 | 36 | 505 | 1084 | 1561 | 9.77e-113 | 365 |
Msa1144150 | AT5G43900.3 | 44.332 | 494 | 235 | 14 | 36 | 505 | 1087 | 1564 | 1.18e-112 | 365 |
Msa1144150 | AT4G33200.1 | 42.095 | 506 | 239 | 13 | 19 | 498 | 1024 | 1501 | 2.98e-101 | 333 |
Msa1144150 | AT4G33200.4 | 42.012 | 507 | 239 | 13 | 19 | 498 | 1024 | 1502 | 4.14e-101 | 333 |
Msa1144150 | AT4G33200.2 | 41.468 | 504 | 215 | 14 | 19 | 498 | 1024 | 1471 | 3.58e-99 | 327 |
Msa1144150 | AT1G04160.2 | 42.755 | 421 | 203 | 11 | 5 | 409 | 993 | 1391 | 2.93e-93 | 310 |
Msa1144150 | AT2G20290.2 | 41.419 | 437 | 206 | 13 | 88 | 505 | 1076 | 1481 | 4.50e-90 | 301 |
Msa1144150 | AT2G20290.1 | 41.419 | 437 | 206 | 13 | 88 | 505 | 1087 | 1492 | 5.66e-90 | 301 |
Msa1144150 | AT2G20290.3 | 41.514 | 436 | 205 | 13 | 89 | 505 | 1062 | 1466 | 7.90e-90 | 301 |
Msa1144150 | AT4G33200.3 | 39.920 | 501 | 238 | 15 | 19 | 498 | 1024 | 1482 | 4.01e-89 | 299 |
Msa1144150 | AT2G20290.4 | 41.031 | 446 | 202 | 15 | 89 | 505 | 1062 | 1475 | 1.26e-87 | 294 |
Msa1144150 | AT1G04600.1 | 35.229 | 545 | 256 | 15 | 35 | 505 | 1207 | 1728 | 1.33e-83 | 283 |
Msa1144150 | AT5G20470.1 | 57.225 | 173 | 50 | 5 | 361 | 510 | 381 | 552 | 5.45e-51 | 183 |
Msa1144150 | AT2G33240.5 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1041 | 1241 | 3.81e-42 | 162 |
Msa1144150 | AT2G33240.5 | 34.657 | 277 | 137 | 8 | 35 | 291 | 694 | 946 | 4.37e-36 | 143 |
Msa1144150 | AT2G33240.3 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1555 | 1755 | 8.28e-42 | 160 |
Msa1144150 | AT2G33240.3 | 35.793 | 271 | 129 | 8 | 35 | 291 | 1221 | 1460 | 4.33e-37 | 147 |
Msa1144150 | AT2G33240.4 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1562 | 1762 | 8.68e-42 | 160 |
Msa1144150 | AT2G33240.4 | 35.793 | 271 | 136 | 7 | 35 | 291 | 1221 | 1467 | 1.41e-37 | 148 |
Msa1144150 | AT2G33240.1 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1568 | 1768 | 8.77e-42 | 160 |
Msa1144150 | AT2G33240.1 | 34.657 | 277 | 137 | 8 | 35 | 291 | 1221 | 1473 | 4.64e-36 | 144 |
Msa1144150 | AT2G33240.2 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1544 | 1744 | 8.82e-42 | 160 |
Msa1144150 | AT2G33240.2 | 35.793 | 271 | 136 | 7 | 35 | 291 | 1203 | 1449 | 1.52e-37 | 148 |
Msa1144150 | AT2G33240.8 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1547 | 1747 | 8.91e-42 | 160 |
Msa1144150 | AT2G33240.8 | 33.544 | 316 | 158 | 10 | 4 | 291 | 1161 | 1452 | 1.66e-36 | 145 |
Msa1144150 | AT2G33240.7 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1547 | 1747 | 8.91e-42 | 160 |
Msa1144150 | AT2G33240.7 | 33.544 | 316 | 158 | 10 | 4 | 291 | 1161 | 1452 | 1.66e-36 | 145 |
Msa1144150 | AT2G33240.6 | 43.137 | 204 | 101 | 5 | 314 | 505 | 1567 | 1767 | 1.01e-41 | 160 |
Msa1144150 | AT2G33240.6 | 35.793 | 271 | 136 | 7 | 35 | 291 | 1226 | 1472 | 1.43e-37 | 148 |
Msa1144150 | AT5G20450.3 | 37.991 | 229 | 86 | 5 | 118 | 331 | 118 | 305 | 5.54e-34 | 130 |
Msa1144150 | AT5G20450.7 | 37.991 | 229 | 86 | 5 | 118 | 331 | 96 | 283 | 5.54e-34 | 130 |
Msa1144150 | AT5G20450.8 | 37.991 | 229 | 86 | 5 | 118 | 331 | 96 | 283 | 5.54e-34 | 130 |
Msa1144150 | AT5G20450.9 | 37.991 | 229 | 86 | 5 | 118 | 331 | 117 | 304 | 6.18e-34 | 130 |
Msa1144150 | AT5G20450.10 | 37.931 | 232 | 88 | 5 | 118 | 334 | 140 | 330 | 6.50e-34 | 132 |
Msa1144150 | AT5G20450.11 | 37.991 | 229 | 86 | 5 | 118 | 331 | 140 | 327 | 9.85e-34 | 130 |
Msa1144150 | AT5G20450.12 | 37.991 | 229 | 86 | 5 | 118 | 331 | 140 | 327 | 9.85e-34 | 130 |
Msa1144150 | AT5G20450.2 | 37.991 | 229 | 86 | 5 | 118 | 331 | 140 | 327 | 9.85e-34 | 130 |
Msa1144150 | AT5G20450.1 | 38.528 | 231 | 82 | 7 | 118 | 331 | 147 | 334 | 1.15e-33 | 130 |
Msa1144150 | AT5G20450.6 | 38.528 | 231 | 82 | 7 | 118 | 331 | 162 | 349 | 1.38e-33 | 130 |
Msa1144150 | AT5G20450.5 | 37.991 | 229 | 86 | 5 | 118 | 331 | 161 | 348 | 1.44e-33 | 130 |
Find 148 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAACTCAGGCTTCTATTAT+TGG | 0.124659 | 7_4:+20122888 | Msa1144150:three_prime_UTR |
TGTGGCTTTCCTTCAGATTC+AGG | 0.181103 | 7_4:-20119873 | None:intergenic |
CATCGATGAATGAGAATATT+TGG | 0.181744 | 7_4:-20121619 | None:intergenic |
AGTCTCAGCCTGAGCTCTTT+TGG | 0.220187 | 7_4:-20118421 | None:intergenic |
GCCTCTATCGCTCCATCTTA+TGG | 0.222893 | 7_4:+20122781 | Msa1144150:three_prime_UTR |
TCCCGTCAAGGTTTAGTAAA+AGG | 0.225736 | 7_4:+20121388 | Msa1144150:CDS |
GTTCCTTAGTTATTTCATTC+AGG | 0.229331 | 7_4:-20122084 | None:intergenic |
GCCTTCCTTGAGAAATTATA+TGG | 0.229926 | 7_4:+20120693 | Msa1144150:CDS |
TTAACAGGCACCTCCTTTCT+TGG | 0.247759 | 7_4:+20121580 | Msa1144150:intron |
CGAATGCATATCACAAGATT+TGG | 0.249017 | 7_4:+20120038 | Msa1144150:CDS |
TTCTACTTCTTGCATGGATT+TGG | 0.250394 | 7_4:-20122661 | None:intergenic |
GATACAGGAATCACTGTTAT+TGG | 0.258978 | 7_4:+20118377 | None:intergenic |
TCTATTATTGGTGAGTTGCC+TGG | 0.272830 | 7_4:+20122900 | Msa1144150:three_prime_UTR |
CTAACCTCTGAACCAATTCT+TGG | 0.278716 | 7_4:-20118505 | None:intergenic |
CTTGGAGTTGATCCGCTTTA+CGG | 0.287005 | 7_4:-20118487 | None:intergenic |
ATTTCATTCAGGGACTTCTT+AGG | 0.315522 | 7_4:-20122073 | None:intergenic |
GCTGGATTGCCATTTATAAA+TGG | 0.323395 | 7_4:+20120591 | Msa1144150:CDS |
TTTAAACAGCTCCTTACTTC+TGG | 0.325549 | 7_4:-20118448 | None:intergenic |
AGACCTCGACCATTTATAAA+TGG | 0.332201 | 7_4:-20120600 | None:intergenic |
TAGGCAAGCAGTTGGATTCC+TGG | 0.338486 | 7_4:+20121952 | Msa1144150:CDS |
AGCAGCTCCACTTGCTTTGA+GGG | 0.361021 | 7_4:-20120382 | None:intergenic |
GTATACACAGTCCAAGTAAT+GGG | 0.361512 | 7_4:-20120749 | None:intergenic |
ACCTCGAGTCATCGTCTAAT+AGG | 0.362443 | 7_4:-20122522 | None:intergenic |
ATGCTGTTCTTCGGCGTTGT+GGG | 0.365894 | 7_4:-20120413 | None:intergenic |
ACAGCATCATCTTCTCTGTT+TGG | 0.367427 | 7_4:+20120429 | Msa1144150:CDS |
CACTTGCTTTGAGGGTGCGT+TGG | 0.373294 | 7_4:-20120374 | None:intergenic |
ATACTGATGTATTAGCCTAT+TGG | 0.374702 | 7_4:+20120319 | Msa1144150:CDS |
TCGATGTTCAATTATTCAAC+AGG | 0.381005 | 7_4:+20121636 | Msa1144150:CDS |
CTATTATTGGTGAGTTGCCT+GGG | 0.382986 | 7_4:+20122901 | Msa1144150:three_prime_UTR |
CATCTTTGTGCAGTCACCCT+GGG | 0.390968 | 7_4:-20122809 | None:intergenic |
GAATGCATATCACAAGATTT+GGG | 0.396771 | 7_4:+20120039 | Msa1144150:CDS |
CCTCTATCGCTCCATCTTAT+GGG | 0.399782 | 7_4:+20122782 | Msa1144150:three_prime_UTR |
GTGATACAGCCAATGCTTGC+TGG | 0.399896 | 7_4:-20119535 | None:intergenic |
CGCCATTTGTCACATGCATT+GGG | 0.401231 | 7_4:-20122988 | None:intergenic |
CAAATGACCTCCAGTGTAGA+AGG | 0.401368 | 7_4:-20120112 | None:intergenic |
TTCCTTAGTTATTTCATTCA+GGG | 0.402693 | 7_4:-20122083 | None:intergenic |
AGCGGATCAACTCCAAGAAT+TGG | 0.407452 | 7_4:+20118493 | Msa1144150:CDS |
GCATCTTTGTGCAGTCACCC+TGG | 0.407494 | 7_4:-20122810 | None:intergenic |
AGTGTTGTTCATTCAGCAAC+GGG | 0.408930 | 7_4:+20121760 | Msa1144150:CDS |
AGTGTAGAAGGCATTTATAT+AGG | 0.409492 | 7_4:-20120100 | None:intergenic |
GGGAGGAACTGAAACATATT+AGG | 0.409733 | 7_4:+20121933 | Msa1144150:CDS |
GTGTAGAAGGCATTTATATA+GGG | 0.412070 | 7_4:-20120099 | None:intergenic |
ATCGATGAATGAGAATATTT+GGG | 0.414091 | 7_4:-20121618 | None:intergenic |
TAGCAGCTCCACTTGCTTTG+AGG | 0.420039 | 7_4:-20120383 | None:intergenic |
GAAGTAAGGAGCTGTTTAAA+AGG | 0.422745 | 7_4:+20118451 | Msa1144150:CDS |
TATATAAATGCCTTCTACAC+TGG | 0.423790 | 7_4:+20120102 | Msa1144150:CDS |
CCCGTCAAGGTTTAGTAAAA+GGG | 0.435935 | 7_4:+20121389 | Msa1144150:CDS |
ATACGTGAGAACTCAGGGTT+TGG | 0.442787 | 7_4:+20122711 | Msa1144150:CDS |
CTAATACATCAGTATTATCC+TGG | 0.446585 | 7_4:-20120311 | None:intergenic |
CCCATAAGATGGAGCGATAG+AGG | 0.452774 | 7_4:-20122782 | None:intergenic |
ATGTGACAAATGGCGATCAT+AGG | 0.454288 | 7_4:+20122996 | Msa1144150:three_prime_UTR |
CTCGCGTTGATGAAACTTGA+AGG | 0.464373 | 7_4:-20122939 | None:intergenic |
TGCATTCGATCAACAAGTCC+TGG | 0.468352 | 7_4:-20120023 | None:intergenic |
TCGCCATTTGTCACATGCAT+TGG | 0.469587 | 7_4:-20122989 | None:intergenic |
TACTCCATGTTTATTTGATG+TGG | 0.469734 | 7_4:+20123126 | Msa1144150:three_prime_UTR |
TCCATCTTATGGGTATCCCC+AGG | 0.470645 | 7_4:+20122792 | Msa1144150:three_prime_UTR |
AAAGAGATATCCCCATTACT+TGG | 0.472318 | 7_4:+20120738 | Msa1144150:CDS |
AAACCTTGACGGGAGGTCCT+TGG | 0.476523 | 7_4:-20121379 | None:intergenic |
ACTGTATACAACAATTATAC+AGG | 0.476983 | 7_4:+20122214 | Msa1144150:CDS |
TCCTGAATAATGACTGATCT+AGG | 0.480942 | 7_4:-20119584 | None:intergenic |
TGAGACTGAAGCCAGAAGTA+AGG | 0.482498 | 7_4:+20118437 | Msa1144150:CDS |
AACACCTTGCGGACCAAGAA+AGG | 0.482732 | 7_4:-20121593 | None:intergenic |
AGCAACTTCTACTTCTTGCA+TGG | 0.488919 | 7_4:-20122667 | None:intergenic |
TACGTGAGAACTCAGGGTTT+GGG | 0.490253 | 7_4:+20122712 | Msa1144150:CDS |
TCCATATAATTTCTCAAGGA+AGG | 0.491269 | 7_4:-20120694 | None:intergenic |
GTCCCTGAATGAAATAACTA+AGG | 0.493940 | 7_4:+20122081 | Msa1144150:CDS |
ATTACTTGGACTGTGTATAC+AGG | 0.498198 | 7_4:+20120752 | Msa1144150:CDS |
GATCATAGGTACAGCCATAC+AGG | 0.498579 | 7_4:+20123010 | Msa1144150:three_prime_UTR |
GAGAAGATGATGCTGTTCTT+CGG | 0.498882 | 7_4:-20120422 | None:intergenic |
AGGGGATCTCCTCAGAGTGC+TGG | 0.505301 | 7_4:+20120573 | Msa1144150:CDS |
TTGTCACATGCATTGGGACA+TGG | 0.508323 | 7_4:-20122982 | None:intergenic |
ACCTCCTTTCTTGGTCCGCA+AGG | 0.509655 | 7_4:+20121589 | Msa1144150:CDS |
CTCGGCAACCATAGCTCTCA+TGG | 0.512738 | 7_4:-20122470 | None:intergenic |
AGATTCAGGCTCACGTACAT+TGG | 0.513296 | 7_4:-20119859 | None:intergenic |
AAATGATCACACGTCTGTAC+AGG | 0.513757 | 7_4:-20123239 | None:intergenic |
AGATGTATTAGACAACCAAT+AGG | 0.513924 | 7_4:-20120334 | None:intergenic |
TGGGTTCTTACTAGCTCGCT+CGG | 0.515204 | 7_4:+20122731 | Msa1144150:CDS |
TGACTGGACAACAACCTGTA+TGG | 0.517339 | 7_4:-20123024 | None:intergenic |
CCCTGGGGATACCCATAAGA+TGG | 0.518137 | 7_4:-20122793 | None:intergenic |
AGTTCTTCGCCAGCAAGCAT+TGG | 0.522449 | 7_4:+20119526 | Msa1144150:CDS |
AGAAGAAGCCAAAAGAGCTC+AGG | 0.531195 | 7_4:+20118413 | Msa1144150:CDS |
GTCCCAATGCATGTGACAAA+TGG | 0.531863 | 7_4:+20122986 | Msa1144150:three_prime_UTR |
AGGAGCTGTTTAAAAGGTCG+AGG | 0.532186 | 7_4:+20118457 | Msa1144150:CDS |
GGGTGACTGCACAAAGATGC+AGG | 0.532383 | 7_4:+20122813 | Msa1144150:three_prime_UTR |
ACAGTACACTGGCTCGGCGT+GGG | 0.535985 | 7_4:+20121913 | Msa1144150:intron |
GGAGTATGTGAAGACAGGTT+TGG | 0.537057 | 7_4:+20121782 | Msa1144150:CDS |
AACGGGGAGTATGTGAAGAC+AGG | 0.537150 | 7_4:+20121777 | Msa1144150:CDS |
CGTTGATACGTGAGAACTCA+GGG | 0.540697 | 7_4:+20122706 | Msa1144150:CDS |
TCAGGCTCACGTACATTGGA+TGG | 0.541240 | 7_4:-20119855 | None:intergenic |
AAACATATTAGGCAAGCAGT+TGG | 0.541928 | 7_4:+20121944 | Msa1144150:CDS |
ACAAGTAGAAGCAAAATATC+CGG | 0.544619 | 7_4:+20120644 | Msa1144150:CDS |
GGTTTGTGAGTCTTATACGT+GGG | 0.548248 | 7_4:+20123093 | Msa1144150:three_prime_UTR |
ATGCAGAGGACACCAGAAAA+CGG | 0.548807 | 7_4:+20119681 | Msa1144150:intron |
AGCAAGCTTTAATAGCTCAC+TGG | 0.550058 | 7_4:+20121437 | Msa1144150:CDS |
TTGTTGTTGTCACACGCTCA+AGG | 0.554067 | 7_4:+20123047 | Msa1144150:three_prime_UTR |
TACAGTACACTGGCTCGGCG+TGG | 0.554550 | 7_4:+20121912 | Msa1144150:intron |
GACAGCATTAGTAGAGTCCT+CGG | 0.555902 | 7_4:-20122488 | None:intergenic |
TGTATACACAGTCCAAGTAA+TGG | 0.560179 | 7_4:-20120750 | None:intergenic |
TTGTTTACAGTACACTGGCT+CGG | 0.560577 | 7_4:+20121907 | Msa1144150:intron |
GATGCTGTTCTTCGGCGTTG+TGG | 0.562094 | 7_4:-20120414 | None:intergenic |
TTGCCATTTATAAATGGTCG+AGG | 0.565895 | 7_4:+20120597 | Msa1144150:CDS |
CGTGTGACAACAACAATGAC+TGG | 0.569971 | 7_4:-20123040 | None:intergenic |
CAACGCACCCTCAAAGCAAG+TGG | 0.571235 | 7_4:+20120375 | Msa1144150:CDS |
TTCTCACGTATCAACGGAGG+AGG | 0.571431 | 7_4:-20122699 | None:intergenic |
ATCACTGTTATTGGAAAGAG+AGG | 0.573241 | 7_4:+20118386 | Msa1144150:CDS |
ATCTATTGTTTACAGTACAC+TGG | 0.577132 | 7_4:+20121902 | Msa1144150:intron |
GAAAACGGAAATGCTCTGAA+TGG | 0.583678 | 7_4:+20119696 | Msa1144150:CDS |
CGAGGTCTTAGTAGACTCGA+TGG | 0.584936 | 7_4:+20120615 | Msa1144150:CDS |
TTCAAGTTTCATCAACGCGA+GGG | 0.589366 | 7_4:+20122941 | Msa1144150:three_prime_UTR |
TCATTCCATATAATTTCTCA+AGG | 0.589514 | 7_4:-20120698 | None:intergenic |
GAGTGTTGTTCATTCAGCAA+CGG | 0.589858 | 7_4:+20121759 | Msa1144150:CDS |
AGAAGTAGAAGTTGCTGACG+TGG | 0.593376 | 7_4:+20122674 | Msa1144150:CDS |
TAAAACAACTGCAGGCTCCA+AGG | 0.593785 | 7_4:+20121362 | Msa1144150:intron |
TGTTGCTTAAACAAAAGTGC+CGG | 0.593946 | 7_4:-20120663 | None:intergenic |
GTACGTGAGCCTGAATCTGA+AGG | 0.594277 | 7_4:+20119864 | Msa1144150:CDS |
TAATACATCAGTATTATCCT+GGG | 0.599053 | 7_4:-20120310 | None:intergenic |
GTACACTGGCTCGGCGTGGG+AGG | 0.599670 | 7_4:+20121916 | Msa1144150:intron |
CGAGTCATCGTCTAATAGGA+AGG | 0.599854 | 7_4:-20122518 | None:intergenic |
AACTCCAAGAATTGGTTCAG+AGG | 0.603416 | 7_4:+20118501 | Msa1144150:CDS |
CCTGAGTTCTCACGTATCAA+CGG | 0.609654 | 7_4:-20122705 | None:intergenic |
CCATCTTATGGGTATCCCCA+GGG | 0.609775 | 7_4:+20122793 | Msa1144150:three_prime_UTR |
TACAACAACCATGAGAGCTA+TGG | 0.611937 | 7_4:+20122462 | Msa1144150:CDS |
ATAAAATTATATGCACAACT+TGG | 0.612107 | 7_4:-20122838 | None:intergenic |
TGCTGTTCTTCGGCGTTGTG+GGG | 0.618049 | 7_4:-20120412 | None:intergenic |
GCTCCAAGGACCTCCCGTCA+AGG | 0.620806 | 7_4:+20121376 | Msa1144150:CDS |
CTTCAAGTTTCATCAACGCG+AGG | 0.622594 | 7_4:+20122940 | Msa1144150:three_prime_UTR |
TCAAGTTTCATCAACGCGAG+GGG | 0.623126 | 7_4:+20122942 | Msa1144150:three_prime_UTR |
CGAGGATTCTGACCGTAAAG+CGG | 0.625541 | 7_4:+20118475 | Msa1144150:CDS |
ATAAATGCCTTCTACACTGG+AGG | 0.627596 | 7_4:+20120105 | Msa1144150:CDS |
TCGCGTTGATGAAACTTGAA+GGG | 0.629924 | 7_4:-20122938 | None:intergenic |
TCCTATTAGACGATGACTCG+AGG | 0.632962 | 7_4:+20122521 | Msa1144150:CDS |
CATGAGAGCTATGGTTGCCG+AGG | 0.633584 | 7_4:+20122471 | Msa1144150:CDS |
ATATTTGGGTGAACACCTTG+CGG | 0.640164 | 7_4:-20121604 | None:intergenic |
ATCTTTGTGCAGTCACCCTG+GGG | 0.640649 | 7_4:-20122808 | None:intergenic |
ACCTTGCGGACCAAGAAAGG+AGG | 0.642518 | 7_4:-20121590 | None:intergenic |
GTTTGGCTGAATTAGAACAA+TGG | 0.650748 | 7_4:+20121799 | Msa1144150:CDS |
GTGCATCGAGGCAACAGAGG+AGG | 0.651278 | 7_4:+20121821 | Msa1144150:CDS |
GCAACCACATCAAATAAACA+TGG | 0.652542 | 7_4:-20123130 | None:intergenic |
AGGTTTGTGAGTCTTATACG+TGG | 0.657535 | 7_4:+20123092 | Msa1144150:three_prime_UTR |
TTGTCATTGAGAGATTTCTG+TGG | 0.660446 | 7_4:-20119891 | None:intergenic |
TATACACAGTCCAAGTAATG+GGG | 0.661207 | 7_4:-20120748 | None:intergenic |
AGGGCGCTCACATGCTAACG+CGG | 0.664578 | 7_4:+20121408 | Msa1144150:CDS |
ATGGTGCATCGAGGCAACAG+AGG | 0.665195 | 7_4:+20121818 | Msa1144150:CDS |
GGGTAATAATGAATTAACCC+AGG | 0.667670 | 7_4:-20122918 | None:intergenic |
AATGGCAATCCAGCACTCTG+AGG | 0.696402 | 7_4:-20120582 | None:intergenic |
GAGTTCTCACGTATCAACGG+AGG | 0.724038 | 7_4:-20122702 | None:intergenic |
GTGTTGTTCATTCAGCAACG+GGG | 0.731245 | 7_4:+20121761 | Msa1144150:CDS |
ATTAGAACAATGGTGCATCG+AGG | 0.736741 | 7_4:+20121809 | Msa1144150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTAACAAATTAAACAAAA+TGG | - | chr7_4:20119798-20119817 | None:intergenic | 10.0% |
!!! | TGTTTAATTTGAATAAATAT+AGG | - | chr7_4:20120996-20121015 | None:intergenic | 10.0% |
!!! | TATATTAACAAAGGTATATA+TGG | - | chr7_4:20119428-20119447 | None:intergenic | 15.0% |
!! | AATTGCATTTATATTAACAA+AGG | - | chr7_4:20119437-20119456 | None:intergenic | 15.0% |
!!! | ACTATTTAAATTTCACTTTT+TGG | + | chr7_4:20119990-20120009 | Msa1144150:intron | 15.0% |
!! | TACAAATTCAAATTCAATAT+TGG | + | chr7_4:20121993-20122012 | Msa1144150:intron | 15.0% |
!!! | TATTACTAAGTATAACATTT+TGG | + | chr7_4:20122172-20122191 | Msa1144150:intron | 15.0% |
!!! | TTGTTTTTTCTTTTCATTTT+AGG | + | chr7_4:20123072-20123091 | Msa1144150:three_prime_UTR | 15.0% |
!! | TCTTTCATTTAGAAATTTGA+TGG | - | chr7_4:20118624-20118643 | None:intergenic | 20.0% |
!! | TATCTAATCTAATACTTTAG+TGG | - | chr7_4:20118652-20118671 | None:intergenic | 20.0% |
!! | AAATAAAACTTGATGCATTT+AGG | - | chr7_4:20118983-20119002 | None:intergenic | 20.0% |
!!! | AAGTGTAACAATTTTAAAAG+TGG | - | chr7_4:20119243-20119262 | None:intergenic | 20.0% |
!! | AAGGTATATATGGTTATTAA+CGG | - | chr7_4:20119418-20119437 | None:intergenic | 20.0% |
!!! | TATATATCAACAACTCATTT+TGG | + | chr7_4:20119765-20119784 | Msa1144150:intron | 20.0% |
!! | TAAATTGTATCACTTTATGT+AGG | + | chr7_4:20120494-20120513 | Msa1144150:intron | 20.0% |
!! | AAATTGTATCACTTTATGTA+GGG | + | chr7_4:20120495-20120514 | Msa1144150:intron | 20.0% |
!!! | AAATACCTTACCTTTTTTTT+TGG | + | chr7_4:20120781-20120800 | Msa1144150:intron | 20.0% |
!!! | AATACCTTACCTTTTTTTTT+GGG | + | chr7_4:20120782-20120801 | Msa1144150:intron | 20.0% |
!! | AACAATCTGAATTAATTGTT+TGG | - | chr7_4:20121853-20121872 | None:intergenic | 20.0% |
!!! | ATTGTTTACTTTTCCATTTT+AGG | + | chr7_4:20121867-20121886 | Msa1144150:intron | 20.0% |
!! | ATAAAATTATATGCACAACT+TGG | - | chr7_4:20122841-20122860 | None:intergenic | 20.0% |
!! | TGTTCAAAAAAAACTAACTT+AGG | - | chr7_4:20123190-20123209 | None:intergenic | 20.0% |
! | TGATTCATTACATGGTATAA+TGG | + | chr7_4:20118720-20118739 | Msa1144150:intron | 25.0% |
!! | TCACTTATATACACATTTTC+AGG | - | chr7_4:20118927-20118946 | None:intergenic | 25.0% |
! | TGAAAATGTGTATATAAGTG+AGG | + | chr7_4:20118926-20118945 | Msa1144150:intron | 25.0% |
! | GAAAATGTGTATATAAGTGA+GGG | + | chr7_4:20118927-20118946 | Msa1144150:intron | 25.0% |
!! | TGCTAAAATGACACTTATTT+TGG | - | chr7_4:20119087-20119106 | None:intergenic | 25.0% |
! | TGGAACAAAGTAATAAATGT+TGG | - | chr7_4:20119121-20119140 | None:intergenic | 25.0% |
!! | TTTAGTCCACACATATTTTT+GGG | + | chr7_4:20119296-20119315 | Msa1144150:intron | 25.0% |
! | AAATGGTTGAAAGGAAAATA+TGG | - | chr7_4:20119334-20119353 | None:intergenic | 25.0% |
! | AGGTATATATGGTTATTAAC+GGG | - | chr7_4:20119417-20119436 | None:intergenic | 25.0% |
! | AAAACTATGGTATATGAAGA+GGG | + | chr7_4:20119632-20119651 | Msa1144150:intron | 25.0% |
!!! | TAAATTTCACTTTTTGGTTC+AGG | + | chr7_4:20119996-20120015 | Msa1144150:intron | 25.0% |
! | AAGCTATTGTTTGAATGATA+CGG | - | chr7_4:20120163-20120182 | None:intergenic | 25.0% |
! | TAATACATCAGTATTATCCT+GGG | - | chr7_4:20120313-20120332 | None:intergenic | 25.0% |
! | GTGATACAATTTATTCAGAA+AGG | - | chr7_4:20120487-20120506 | None:intergenic | 25.0% |
! | TCATTCCATATAATTTCTCA+AGG | - | chr7_4:20120701-20120720 | None:intergenic | 25.0% |
!!! | ATACCTTACCTTTTTTTTTG+GGG | + | chr7_4:20120783-20120802 | Msa1144150:intron | 25.0% |
! | TTTCATTTCCCCAAAAAAAA+AGG | - | chr7_4:20120794-20120813 | None:intergenic | 25.0% |
! | AATGGGAATTTCTCAAAATT+TGG | - | chr7_4:20120819-20120838 | None:intergenic | 25.0% |
!!! | AAATTTTGAGAAATTCCCAT+TGG | + | chr7_4:20120818-20120837 | Msa1144150:intron | 25.0% |
! | TTACTTGAATGTCATATATG+AGG | + | chr7_4:20120879-20120898 | Msa1144150:intron | 25.0% |
! | TACTTGAATGTCATATATGA+GGG | + | chr7_4:20120880-20120899 | Msa1144150:intron | 25.0% |
! | TACAAGTATCTTAGAATTTG+TGG | - | chr7_4:20120961-20120980 | None:intergenic | 25.0% |
!!! | AAGGGAAAAGTTTATTTTTC+TGG | - | chr7_4:20121095-20121114 | None:intergenic | 25.0% |
! | TCAGAAAACAATTCATAGAA+AGG | + | chr7_4:20121128-20121147 | Msa1144150:intron | 25.0% |
!! | TTTTATGATAAAACAACTGC+AGG | + | chr7_4:20121354-20121373 | Msa1144150:intron | 25.0% |
! | TTAAGATCAAACTCAGATAA+CGG | - | chr7_4:20121545-20121564 | None:intergenic | 25.0% |
! | ATCGATGAATGAGAATATTT+GGG | - | chr7_4:20121621-20121640 | None:intergenic | 25.0% |
! | TGTACTGTAAACAATAGATT+GGG | - | chr7_4:20121901-20121920 | None:intergenic | 25.0% |
!! | TTCCTTAGTTATTTCATTCA+GGG | - | chr7_4:20122086-20122105 | None:intergenic | 25.0% |
! | ACTGTATACAACAATTATAC+AGG | + | chr7_4:20122214-20122233 | Msa1144150:CDS | 25.0% |
!!! | TCTATTTTGTAATGTTTCTG+CGG | + | chr7_4:20122338-20122357 | Msa1144150:intron | 25.0% |
! | TAAAGTAGCTGATAATTCTA+TGG | + | chr7_4:20122428-20122447 | Msa1144150:intron | 25.0% |
!! | TAGCATTTTTCTTTAACCTT+TGG | + | chr7_4:20122600-20122619 | Msa1144150:intron | 25.0% |
!! | TTTTCTTTAACCTTTGGATT+TGG | + | chr7_4:20122606-20122625 | Msa1144150:intron | 25.0% |
! | AAAAATATACTATACACGTG+AGG | - | chr7_4:20122867-20122886 | None:intergenic | 25.0% |
!!! | TAGTATATTTTTGCTAACTC+AGG | + | chr7_4:20122875-20122894 | Msa1144150:three_prime_UTR | 25.0% |
TTTAAGCTATTAGGTGAAAG+CGG | - | chr7_4:20118687-20118706 | None:intergenic | 30.0% | |
TCTCAGAAGTTTAAGCTATT+AGG | - | chr7_4:20118696-20118715 | None:intergenic | 30.0% | |
GAGATGTTTGATTCATTACA+TGG | + | chr7_4:20118712-20118731 | Msa1144150:intron | 30.0% | |
!!! | ACCAAGTTCTTTTGAGATTA+AGG | + | chr7_4:20118745-20118764 | Msa1144150:intron | 30.0% |
TCCTTAATCTCAAAAGAACT+TGG | - | chr7_4:20118749-20118768 | None:intergenic | 30.0% | |
! | AACTTGATGCATTTAGGATT+TGG | - | chr7_4:20118977-20118996 | None:intergenic | 30.0% |
!!! | GACACTTATTTTGGAATAGA+GGG | - | chr7_4:20119078-20119097 | None:intergenic | 30.0% |
!!! | TGACACTTATTTTGGAATAG+AGG | - | chr7_4:20119079-20119098 | None:intergenic | 30.0% |
CTATAAATTTGGGGAAGAAT+TGG | - | chr7_4:20119141-20119160 | None:intergenic | 30.0% | |
CACACAACACTATAAATTTG+GGG | - | chr7_4:20119150-20119169 | None:intergenic | 30.0% | |
GCACACAACACTATAAATTT+GGG | - | chr7_4:20119151-20119170 | None:intergenic | 30.0% | |
TGCACACAACACTATAAATT+TGG | - | chr7_4:20119152-20119171 | None:intergenic | 30.0% | |
! | CTTTAGTCCACACATATTTT+TGG | + | chr7_4:20119295-20119314 | Msa1144150:intron | 30.0% |
GGTATATATGGTTATTAACG+GGG | - | chr7_4:20119416-20119435 | None:intergenic | 30.0% | |
! | TTGATTTTCTGACTCTGAAT+TGG | - | chr7_4:20119507-20119526 | None:intergenic | 30.0% |
CAAAACTATGGTATATGAAG+AGG | + | chr7_4:20119631-20119650 | Msa1144150:intron | 30.0% | |
TCTTACCTTCTGTATATCTT+AGG | + | chr7_4:20119818-20119837 | Msa1144150:intron | 30.0% | |
CATATCCTAAGATATACAGA+AGG | - | chr7_4:20119826-20119845 | None:intergenic | 30.0% | |
GAATGCATATCACAAGATTT+GGG | + | chr7_4:20120039-20120058 | Msa1144150:CDS | 30.0% | |
!! | GTGTAGAAGGCATTTATATA+GGG | - | chr7_4:20120102-20120121 | None:intergenic | 30.0% |
!! | AGTGTAGAAGGCATTTATAT+AGG | - | chr7_4:20120103-20120122 | None:intergenic | 30.0% |
TATATAAATGCCTTCTACAC+TGG | + | chr7_4:20120102-20120121 | Msa1144150:CDS | 30.0% | |
CTAATACATCAGTATTATCC+TGG | - | chr7_4:20120314-20120333 | None:intergenic | 30.0% | |
! | ATACTGATGTATTAGCCTAT+TGG | + | chr7_4:20120319-20120338 | Msa1144150:CDS | 30.0% |
AGATGTATTAGACAACCAAT+AGG | - | chr7_4:20120337-20120356 | None:intergenic | 30.0% | |
! | TGATTGCCTTTTGTGATTTT+AGG | + | chr7_4:20120545-20120564 | Msa1144150:intron | 30.0% |
! | GATTGCCTTTTGTGATTTTA+GGG | + | chr7_4:20120546-20120565 | Msa1144150:intron | 30.0% |
! | ATTGCCTTTTGTGATTTTAG+GGG | + | chr7_4:20120547-20120566 | Msa1144150:intron | 30.0% |
ACAAGTAGAAGCAAAATATC+CGG | + | chr7_4:20120644-20120663 | Msa1144150:CDS | 30.0% | |
TCCATATAATTTCTCAAGGA+AGG | - | chr7_4:20120697-20120716 | None:intergenic | 30.0% | |
TTTCCCCAAAAAAAAAGGTA+AGG | - | chr7_4:20120789-20120808 | None:intergenic | 30.0% | |
AAGTAAAATCCAAGTACGAT+TGG | - | chr7_4:20120865-20120884 | None:intergenic | 30.0% | |
GTATCTTAGAATTTGTGGTT+GGG | - | chr7_4:20120956-20120975 | None:intergenic | 30.0% | |
AGTATCTTAGAATTTGTGGT+TGG | - | chr7_4:20120957-20120976 | None:intergenic | 30.0% | |
TCTGATTTAGCAAGCAAAAA+GGG | - | chr7_4:20121113-20121132 | None:intergenic | 30.0% | |
TTCTGATTTAGCAAGCAAAA+AGG | - | chr7_4:20121114-20121133 | None:intergenic | 30.0% | |
AAGTACCTACTAGTGATTTA+GGG | - | chr7_4:20121230-20121249 | None:intergenic | 30.0% | |
TGATCTTAACCTGTTTGAAA+TGG | + | chr7_4:20121556-20121575 | Msa1144150:intron | 30.0% | |
CATCGATGAATGAGAATATT+TGG | - | chr7_4:20121622-20121641 | None:intergenic | 30.0% | |
TCGATGTTCAATTATTCAAC+AGG | + | chr7_4:20121636-20121655 | Msa1144150:CDS | 30.0% | |
TTGGGGTAAAAATCCTAAAA+TGG | - | chr7_4:20121883-20121902 | None:intergenic | 30.0% | |
GTACTGTAAACAATAGATTG+GGG | - | chr7_4:20121900-20121919 | None:intergenic | 30.0% | |
GTGTACTGTAAACAATAGAT+TGG | - | chr7_4:20121902-20121921 | None:intergenic | 30.0% | |
ATCTATTGTTTACAGTACAC+TGG | + | chr7_4:20121902-20121921 | Msa1144150:intron | 30.0% | |
GTATCTATTACGTAAATGAC+CGG | + | chr7_4:20122015-20122034 | Msa1144150:intron | 30.0% | |
! | GTTCCTTAGTTATTTCATTC+AGG | - | chr7_4:20122087-20122106 | None:intergenic | 30.0% |
TACTCCATGTTTATTTGATG+TGG | + | chr7_4:20123126-20123145 | Msa1144150:three_prime_UTR | 30.0% | |
ATCACTGTTATTGGAAAGAG+AGG | + | chr7_4:20118386-20118405 | Msa1144150:CDS | 35.0% | |
TTTAAACAGCTCCTTACTTC+TGG | - | chr7_4:20118451-20118470 | None:intergenic | 35.0% | |
GAAGTAAGGAGCTGTTTAAA+AGG | + | chr7_4:20118451-20118470 | Msa1144150:CDS | 35.0% | |
TCAGAGGTTAGTAATGTTTG+AGG | + | chr7_4:20118517-20118536 | Msa1144150:intron | 35.0% | |
TTTATCTGTGTCAAGCTCAA+AGG | + | chr7_4:20118791-20118810 | Msa1144150:intron | 35.0% | |
!!! | ATCTAACCGTGTTAGCTTTT+GGG | + | chr7_4:20118866-20118885 | Msa1144150:intron | 35.0% |
CATTATCCCAAAAGCTAACA+CGG | - | chr7_4:20118875-20118894 | None:intergenic | 35.0% | |
AGGTCATATCTCATTCAATG+TGG | - | chr7_4:20118907-20118926 | None:intergenic | 35.0% | |
! | ATGCATTTAGGATTTGGATC+AGG | - | chr7_4:20118971-20118990 | None:intergenic | 35.0% |
TGAGTGCATTGTAGATTCAA+AGG | - | chr7_4:20119032-20119051 | None:intergenic | 35.0% | |
TCATTGTCATAAATGCACAG+TGG | - | chr7_4:20119196-20119215 | None:intergenic | 35.0% | |
AAACTTGATTGCTCATCCAA+AGG | - | chr7_4:20119378-20119397 | None:intergenic | 35.0% | |
TAACTCCATACAATGCAGAT+TGG | + | chr7_4:20119469-20119488 | Msa1144150:intron | 35.0% | |
ACCTAGATCAGTCATTATTC+AGG | + | chr7_4:20119583-20119602 | Msa1144150:intron | 35.0% | |
TCCTGAATAATGACTGATCT+AGG | - | chr7_4:20119587-20119606 | None:intergenic | 35.0% | |
CAGGAAAGAAAACATTCATG+TGG | + | chr7_4:20119602-20119621 | Msa1144150:intron | 35.0% | |
ATGTGGTCATTGCAAAACTA+TGG | + | chr7_4:20119619-20119638 | Msa1144150:intron | 35.0% | |
! | ATTTTGTGCATGATATGCAG+AGG | + | chr7_4:20119667-20119686 | Msa1144150:intron | 35.0% |
TTGTCATTGAGAGATTTCTG+TGG | - | chr7_4:20119894-20119913 | None:intergenic | 35.0% | |
CGAATGCATATCACAAGATT+TGG | + | chr7_4:20120038-20120057 | Msa1144150:CDS | 35.0% | |
!! | ACAAGATTTGGGATTTTCTG+AGG | + | chr7_4:20120050-20120069 | Msa1144150:CDS | 35.0% |
!! | CAAGATTTGGGATTTTCTGA+GGG | + | chr7_4:20120051-20120070 | Msa1144150:CDS | 35.0% |
! | TTGAGGTAACACAACACTTT+TGG | + | chr7_4:20120189-20120208 | Msa1144150:intron | 35.0% |
CAGTGTTAGTAACATGCTTT+GGG | - | chr7_4:20120273-20120292 | None:intergenic | 35.0% | |
ACAGTGTTAGTAACATGCTT+TGG | - | chr7_4:20120274-20120293 | None:intergenic | 35.0% | |
TTAGCCCCTAAAATCACAAA+AGG | - | chr7_4:20120554-20120573 | None:intergenic | 35.0% | |
!! | TTTTGTGATTTTAGGGGCTA+AGG | + | chr7_4:20120553-20120572 | Msa1144150:intron | 35.0% |
!! | TTTGTGATTTTAGGGGCTAA+GGG | + | chr7_4:20120554-20120573 | Msa1144150:intron | 35.0% |
! | GCTGGATTGCCATTTATAAA+TGG | + | chr7_4:20120591-20120610 | Msa1144150:CDS | 35.0% |
! | TTGCCATTTATAAATGGTCG+AGG | + | chr7_4:20120597-20120616 | Msa1144150:CDS | 35.0% |
AGACCTCGACCATTTATAAA+TGG | - | chr7_4:20120603-20120622 | None:intergenic | 35.0% | |
! | TGTTGCTTAAACAAAAGTGC+CGG | - | chr7_4:20120666-20120685 | None:intergenic | 35.0% |
GCCTTCCTTGAGAAATTATA+TGG | + | chr7_4:20120693-20120712 | Msa1144150:CDS | 35.0% | |
AAAGAGATATCCCCATTACT+TGG | + | chr7_4:20120738-20120757 | Msa1144150:CDS | 35.0% | |
TATACACAGTCCAAGTAATG+GGG | - | chr7_4:20120751-20120770 | None:intergenic | 35.0% | |
GTATACACAGTCCAAGTAAT+GGG | - | chr7_4:20120752-20120771 | None:intergenic | 35.0% | |
TGTATACACAGTCCAAGTAA+TGG | - | chr7_4:20120753-20120772 | None:intergenic | 35.0% | |
ATTACTTGGACTGTGTATAC+AGG | + | chr7_4:20120752-20120771 | Msa1144150:CDS | 35.0% | |
! | TGAGAAATTCCCATTGGTTA+AGG | + | chr7_4:20120824-20120843 | Msa1144150:intron | 35.0% |
! | GAGAAATTCCCATTGGTTAA+GGG | + | chr7_4:20120825-20120844 | Msa1144150:intron | 35.0% |
! | AGAAATTCCCATTGGTTAAG+GGG | + | chr7_4:20120826-20120845 | Msa1144150:intron | 35.0% |
CTATGAATTCCTGTGTTTGA+GGG | - | chr7_4:20121041-20121060 | None:intergenic | 35.0% | |
TCTATGAATTCCTGTGTTTG+AGG | - | chr7_4:20121042-20121061 | None:intergenic | 35.0% | |
TCAAACACAGGAATTCATAG+AGG | + | chr7_4:20121041-20121060 | Msa1144150:intron | 35.0% | |
TTTCATCTGTTAATTGCACC+TGG | + | chr7_4:20121157-20121176 | Msa1144150:intron | 35.0% | |
ATAACAGAAGAAGATTGTCC+AGG | - | chr7_4:20121178-20121197 | None:intergenic | 35.0% | |
GTAATCCCTAAATCACTAGT+AGG | + | chr7_4:20121222-20121241 | Msa1144150:intron | 35.0% | |
CAAGTACCTACTAGTGATTT+AGG | - | chr7_4:20121231-20121250 | None:intergenic | 35.0% | |
! | AATTAAGCTCGTCGATTACT+GGG | - | chr7_4:20121306-20121325 | None:intergenic | 35.0% |
CCTGTTAAACCATTTCAAAC+AGG | - | chr7_4:20121568-20121587 | None:intergenic | 35.0% | |
! | CCTGTTTGAAATGGTTTAAC+AGG | + | chr7_4:20121565-20121584 | Msa1144150:intron | 35.0% |
AAATGCAAAGTGAGAGAAAG+AGG | - | chr7_4:20121665-20121684 | None:intergenic | 35.0% | |
AAAAGCCTGCATTCTTCAAT+AGG | - | chr7_4:20121693-20121712 | None:intergenic | 35.0% | |
GTTTGGCTGAATTAGAACAA+TGG | + | chr7_4:20121799-20121818 | Msa1144150:CDS | 35.0% | |
AAACATATTAGGCAAGCAGT+TGG | + | chr7_4:20121944-20121963 | Msa1144150:CDS | 35.0% | |
TGAAAACTGTGAATGTTACC+AGG | - | chr7_4:20121973-20121992 | None:intergenic | 35.0% | |
TGAAACAGAAAAATGAGAGC+CGG | - | chr7_4:20122037-20122056 | None:intergenic | 35.0% | |
ATTTCATTCAGGGACTTCTT+AGG | - | chr7_4:20122076-20122095 | None:intergenic | 35.0% | |
GTCCCTGAATGAAATAACTA+AGG | + | chr7_4:20122081-20122100 | Msa1144150:CDS | 35.0% | |
!! | TATAACATTTTGGCGTTGCA+GGG | + | chr7_4:20122182-20122201 | Msa1144150:intron | 35.0% |
ACAGGATAAGTACAATGTAC+TGG | + | chr7_4:20122232-20122251 | Msa1144150:intron | 35.0% | |
CAGGATAAGTACAATGTACT+GGG | + | chr7_4:20122233-20122252 | Msa1144150:intron | 35.0% | |
ATGTACTGGGATGACAAATA+CGG | + | chr7_4:20122246-20122265 | Msa1144150:intron | 35.0% | |
! | TTTTGTACAATTCCCAAGCT+GGG | + | chr7_4:20122375-20122394 | Msa1144150:intron | 35.0% |
! | GATAATTCTATGGACTATGC+AGG | + | chr7_4:20122438-20122457 | Msa1144150:intron | 35.0% |
! | TGGATGCAGCATTACATTTT+CGG | + | chr7_4:20122626-20122645 | Msa1144150:intron | 35.0% |
TTCTACTTCTTGCATGGATT+TGG | - | chr7_4:20122664-20122683 | None:intergenic | 35.0% | |
CTAACTCAGGCTTCTATTAT+TGG | + | chr7_4:20122888-20122907 | Msa1144150:three_prime_UTR | 35.0% | |
GGGTAATAATGAATTAACCC+AGG | - | chr7_4:20122921-20122940 | None:intergenic | 35.0% | |
GCAACCACATCAAATAAACA+TGG | - | chr7_4:20123133-20123152 | None:intergenic | 35.0% | |
! | AACTCCAAGAATTGGTTCAG+AGG | + | chr7_4:20118501-20118520 | Msa1144150:CDS | 40.0% |
CTAACCTCTGAACCAATTCT+TGG | - | chr7_4:20118508-20118527 | None:intergenic | 40.0% | |
TTGACACAGATAAAGTGCAG+AGG | - | chr7_4:20118785-20118804 | None:intergenic | 40.0% | |
! | AGATGAAAGCACGTGAATCA+TGG | - | chr7_4:20118850-20118869 | None:intergenic | 40.0% |
!!! | CATCTAACCGTGTTAGCTTT+TGG | + | chr7_4:20118865-20118884 | Msa1144150:intron | 40.0% |
!!! | CACACATATTTTTGGGACAG+CGG | + | chr7_4:20119303-20119322 | Msa1144150:intron | 40.0% |
CAATTACATGCGTGGACAAA+TGG | - | chr7_4:20119351-20119370 | None:intergenic | 40.0% | |
ATATGGTTATTAACGGGGAG+AGG | - | chr7_4:20119411-20119430 | None:intergenic | 40.0% | |
TTCCTCCAATCTGCATTGTA+TGG | - | chr7_4:20119477-20119496 | None:intergenic | 40.0% | |
!! | TTCAGAGCATTTCCGTTTTC+TGG | - | chr7_4:20119696-20119715 | None:intergenic | 40.0% |
! | GAAAACGGAAATGCTCTGAA+TGG | + | chr7_4:20119696-20119715 | Msa1144150:CDS | 40.0% |
CTGAATGGTGAAGCAAAAAC+TGG | + | chr7_4:20119711-20119730 | Msa1144150:CDS | 40.0% | |
GCAAAAACTGGATCAGTAAG+AGG | + | chr7_4:20119723-20119742 | Msa1144150:intron | 40.0% | |
TCTATGTAGCTACTCACTTG+TGG | - | chr7_4:20119918-20119937 | None:intergenic | 40.0% | |
!!! | CTTTTTGGTTCAGGAAAACC+AGG | + | chr7_4:20120005-20120024 | Msa1144150:intron | 40.0% |
ATAAATGCCTTCTACACTGG+AGG | + | chr7_4:20120105-20120124 | Msa1144150:CDS | 40.0% | |
AACAATAGCTTCAGCTGTTG+AGG | + | chr7_4:20120172-20120191 | Msa1144150:intron | 40.0% | |
ACACTGTTCTGCATCATTGA+AGG | + | chr7_4:20120287-20120306 | Msa1144150:intron | 40.0% | |
GAGAAGATGATGCTGTTCTT+CGG | - | chr7_4:20120425-20120444 | None:intergenic | 40.0% | |
ACAGCATCATCTTCTCTGTT+TGG | + | chr7_4:20120429-20120448 | Msa1144150:CDS | 40.0% | |
!! | TTGTGATTTTAGGGGCTAAG+GGG | + | chr7_4:20120555-20120574 | Msa1144150:intron | 40.0% |
AAGTACACAACCCACAAAAC+CGG | - | chr7_4:20120924-20120943 | None:intergenic | 40.0% | |
TTATAGAGACCCTCAAACAC+AGG | + | chr7_4:20121029-20121048 | Msa1144150:intron | 40.0% | |
! | TAGAGGCACATTGTCTGTAA+CGG | + | chr7_4:20121058-20121077 | Msa1144150:intron | 40.0% |
! | GAATTAAGCTCGTCGATTAC+TGG | - | chr7_4:20121307-20121326 | None:intergenic | 40.0% |
AATCGACGAGCTTAATTCTC+TGG | + | chr7_4:20121309-20121328 | Msa1144150:intron | 40.0% | |
! | TTTTACTAAACCTTGACGGG+AGG | - | chr7_4:20121389-20121408 | None:intergenic | 40.0% |
TCCCGTCAAGGTTTAGTAAA+AGG | + | chr7_4:20121388-20121407 | Msa1144150:CDS | 40.0% | |
! | CCCTTTTACTAAACCTTGAC+GGG | - | chr7_4:20121392-20121411 | None:intergenic | 40.0% |
CCCGTCAAGGTTTAGTAAAA+GGG | + | chr7_4:20121389-20121408 | Msa1144150:CDS | 40.0% | |
! | GCCCTTTTACTAAACCTTGA+CGG | - | chr7_4:20121393-20121412 | None:intergenic | 40.0% |
! | AGCAAGCTTTAATAGCTCAC+TGG | + | chr7_4:20121437-20121456 | Msa1144150:CDS | 40.0% |
CGGAAATGCAGAAACTGAAA+GGG | - | chr7_4:20121525-20121544 | None:intergenic | 40.0% | |
ACGGAAATGCAGAAACTGAA+AGG | - | chr7_4:20121526-20121545 | None:intergenic | 40.0% | |
ATATTTGGGTGAACACCTTG+CGG | - | chr7_4:20121607-20121626 | None:intergenic | 40.0% | |
CATGTCCTATTGAAGAATGC+AGG | + | chr7_4:20121685-20121704 | Msa1144150:intron | 40.0% | |
! | GAAGAATGCAGGCTTTTTGA+TGG | + | chr7_4:20121696-20121715 | Msa1144150:intron | 40.0% |
!!! | GCTTTTTGATGGACTTGATC+TGG | + | chr7_4:20121707-20121726 | Msa1144150:intron | 40.0% |
! | GAGTGTTGTTCATTCAGCAA+CGG | + | chr7_4:20121759-20121778 | Msa1144150:CDS | 40.0% |
! | AGTGTTGTTCATTCAGCAAC+GGG | + | chr7_4:20121760-20121779 | Msa1144150:CDS | 40.0% |
ATTAGAACAATGGTGCATCG+AGG | + | chr7_4:20121809-20121828 | Msa1144150:CDS | 40.0% | |
! | TTGTTTACAGTACACTGGCT+CGG | + | chr7_4:20121907-20121926 | Msa1144150:intron | 40.0% |
GGGAGGAACTGAAACATATT+AGG | + | chr7_4:20121933-20121952 | Msa1144150:CDS | 40.0% | |
!! | GGCTCTCATTTTTCTGTTTC+AGG | + | chr7_4:20122036-20122055 | Msa1144150:intron | 40.0% |
!! | GTATAACATTTTGGCGTTGC+AGG | + | chr7_4:20122181-20122200 | Msa1144150:intron | 40.0% |
! | CTTTTGTACAATTCCCAAGC+TGG | + | chr7_4:20122374-20122393 | Msa1144150:intron | 40.0% |
TACAACAACCATGAGAGCTA+TGG | + | chr7_4:20122462-20122481 | Msa1144150:CDS | 40.0% | |
TCGAGGTATAGTATCAGTTC+AGG | + | chr7_4:20122538-20122557 | Msa1144150:intron | 40.0% | |
AATGCTGCATCCAAATCCAA+AGG | - | chr7_4:20122619-20122638 | None:intergenic | 40.0% | |
! | ATGCAGCATTACATTTTCGG+TGG | + | chr7_4:20122629-20122648 | Msa1144150:intron | 40.0% |
AGCAACTTCTACTTCTTGCA+TGG | - | chr7_4:20122670-20122689 | None:intergenic | 40.0% | |
TCTATTATTGGTGAGTTGCC+TGG | + | chr7_4:20122900-20122919 | Msa1144150:three_prime_UTR | 40.0% | |
CTATTATTGGTGAGTTGCCT+GGG | + | chr7_4:20122901-20122920 | Msa1144150:three_prime_UTR | 40.0% | |
! | TCGCGTTGATGAAACTTGAA+GGG | - | chr7_4:20122941-20122960 | None:intergenic | 40.0% |
! | TTCAAGTTTCATCAACGCGA+GGG | + | chr7_4:20122941-20122960 | Msa1144150:three_prime_UTR | 40.0% |
ATGTGACAAATGGCGATCAT+AGG | + | chr7_4:20122996-20123015 | Msa1144150:three_prime_UTR | 40.0% | |
! | AGGTTTGTGAGTCTTATACG+TGG | + | chr7_4:20123092-20123111 | Msa1144150:three_prime_UTR | 40.0% |
! | GGTTTGTGAGTCTTATACGT+GGG | + | chr7_4:20123093-20123112 | Msa1144150:three_prime_UTR | 40.0% |
AAATGATCACACGTCTGTAC+AGG | - | chr7_4:20123242-20123261 | None:intergenic | 40.0% | |
AGAAGAAGCCAAAAGAGCTC+AGG | + | chr7_4:20118413-20118432 | Msa1144150:CDS | 45.0% | |
TGAGACTGAAGCCAGAAGTA+AGG | + | chr7_4:20118437-20118456 | Msa1144150:CDS | 45.0% | |
AGGAGCTGTTTAAAAGGTCG+AGG | + | chr7_4:20118457-20118476 | Msa1144150:CDS | 45.0% | |
! | CTTGGAGTTGATCCGCTTTA+CGG | - | chr7_4:20118490-20118509 | None:intergenic | 45.0% |
AGCGGATCAACTCCAAGAAT+TGG | + | chr7_4:20118493-20118512 | Msa1144150:CDS | 45.0% | |
CACAGTGGAGTGTAATGACA+TGG | - | chr7_4:20119181-20119200 | None:intergenic | 45.0% | |
CGCTGTCCCAAAAATATGTG+TGG | - | chr7_4:20119305-20119324 | None:intergenic | 45.0% | |
TGCGTGGACAAATGGTTGAA+AGG | - | chr7_4:20119343-20119362 | None:intergenic | 45.0% | |
AAGGCACACAATTACATGCG+TGG | - | chr7_4:20119359-20119378 | None:intergenic | 45.0% | |
CGCATGTAATTGTGTGCCTT+TGG | + | chr7_4:20119359-20119378 | Msa1144150:intron | 45.0% | |
CTCCATACAATGCAGATTGG+AGG | + | chr7_4:20119472-20119491 | Msa1144150:intron | 45.0% | |
ATGCAGAGGACACCAGAAAA+CGG | + | chr7_4:20119681-20119700 | Msa1144150:intron | 45.0% | |
AGATTCAGGCTCACGTACAT+TGG | - | chr7_4:20119862-20119881 | None:intergenic | 45.0% | |
TGTGGCTTTCCTTCAGATTC+AGG | - | chr7_4:20119876-20119895 | None:intergenic | 45.0% | |
TGCATTCGATCAACAAGTCC+TGG | - | chr7_4:20120026-20120045 | None:intergenic | 45.0% | |
GGAAAAACGCATGCAGCAAT+AGG | - | chr7_4:20120081-20120100 | None:intergenic | 45.0% | |
CAAATGACCTCCAGTGTAGA+AGG | - | chr7_4:20120115-20120134 | None:intergenic | 45.0% | |
GCAAAAGCCCCTTAACCAAT+GGG | - | chr7_4:20120836-20120855 | None:intergenic | 45.0% | |
TGCAAAAGCCCCTTAACCAA+TGG | - | chr7_4:20120837-20120856 | None:intergenic | 45.0% | |
! | TGGTTAAGGGGCTTTTGCAA+TGG | + | chr7_4:20120838-20120857 | Msa1144150:intron | 45.0% |
TGCAATGGACCAATCGTACT+TGG | + | chr7_4:20120853-20120872 | Msa1144150:intron | 45.0% | |
TAAAACAACTGCAGGCTCCA+AGG | + | chr7_4:20121362-20121381 | Msa1144150:intron | 45.0% | |
TTAACAGGCACCTCCTTTCT+TGG | + | chr7_4:20121580-20121599 | Msa1144150:intron | 45.0% | |
! | GTGTTGTTCATTCAGCAACG+GGG | + | chr7_4:20121761-20121780 | Msa1144150:CDS | 45.0% |
GGAGTATGTGAAGACAGGTT+TGG | + | chr7_4:20121782-20121801 | Msa1144150:CDS | 45.0% | |
AACTCACAGTGTGTCTACAG+AGG | + | chr7_4:20122269-20122288 | Msa1144150:intron | 45.0% | |
GACAGCATTAGTAGAGTCCT+CGG | - | chr7_4:20122491-20122510 | None:intergenic | 45.0% | |
CGAGTCATCGTCTAATAGGA+AGG | - | chr7_4:20122521-20122540 | None:intergenic | 45.0% | |
TCCTATTAGACGATGACTCG+AGG | + | chr7_4:20122521-20122540 | Msa1144150:CDS | 45.0% | |
ACCTCGAGTCATCGTCTAAT+AGG | - | chr7_4:20122525-20122544 | None:intergenic | 45.0% | |
AGAAGTAGAAGTTGCTGACG+TGG | + | chr7_4:20122674-20122693 | Msa1144150:CDS | 45.0% | |
CCTGAGTTCTCACGTATCAA+CGG | - | chr7_4:20122708-20122727 | None:intergenic | 45.0% | |
CGTTGATACGTGAGAACTCA+GGG | + | chr7_4:20122706-20122725 | Msa1144150:CDS | 45.0% | |
ATACGTGAGAACTCAGGGTT+TGG | + | chr7_4:20122711-20122730 | Msa1144150:CDS | 45.0% | |
TACGTGAGAACTCAGGGTTT+GGG | + | chr7_4:20122712-20122731 | Msa1144150:CDS | 45.0% | |
CCTCTATCGCTCCATCTTAT+GGG | + | chr7_4:20122782-20122801 | Msa1144150:three_prime_UTR | 45.0% | |
! | CTCGCGTTGATGAAACTTGA+AGG | - | chr7_4:20122942-20122961 | None:intergenic | 45.0% |
! | CTTCAAGTTTCATCAACGCG+AGG | + | chr7_4:20122940-20122959 | Msa1144150:three_prime_UTR | 45.0% |
TCAAGTTTCATCAACGCGAG+GGG | + | chr7_4:20122942-20122961 | Msa1144150:three_prime_UTR | 45.0% | |
TTGTCACATGCATTGGGACA+TGG | - | chr7_4:20122985-20123004 | None:intergenic | 45.0% | |
GTCCCAATGCATGTGACAAA+TGG | + | chr7_4:20122986-20123005 | Msa1144150:three_prime_UTR | 45.0% | |
CGCCATTTGTCACATGCATT+GGG | - | chr7_4:20122991-20123010 | None:intergenic | 45.0% | |
TCGCCATTTGTCACATGCAT+TGG | - | chr7_4:20122992-20123011 | None:intergenic | 45.0% | |
GATCATAGGTACAGCCATAC+AGG | + | chr7_4:20123010-20123029 | Msa1144150:three_prime_UTR | 45.0% | |
TGACTGGACAACAACCTGTA+TGG | - | chr7_4:20123027-20123046 | None:intergenic | 45.0% | |
CGTGTGACAACAACAATGAC+TGG | - | chr7_4:20123043-20123062 | None:intergenic | 45.0% | |
! | TTGTTGTTGTCACACGCTCA+AGG | + | chr7_4:20123047-20123066 | Msa1144150:three_prime_UTR | 45.0% |
! | AGTCTCAGCCTGAGCTCTTT+TGG | - | chr7_4:20118424-20118443 | None:intergenic | 50.0% |
CGAGGATTCTGACCGTAAAG+CGG | + | chr7_4:20118475-20118494 | Msa1144150:CDS | 50.0% | |
GGATTTGGATCAGGCTCGTA+AGG | - | chr7_4:20118962-20118981 | None:intergenic | 50.0% | |
AGTTCTTCGCCAGCAAGCAT+TGG | + | chr7_4:20119526-20119545 | Msa1144150:CDS | 50.0% | |
GTGATACAGCCAATGCTTGC+TGG | - | chr7_4:20119538-20119557 | None:intergenic | 50.0% | |
! | GCAGCAAGAGCTTTTGCAGT+TGG | - | chr7_4:20119560-20119579 | None:intergenic | 50.0% |
TCAGGCTCACGTACATTGGA+TGG | - | chr7_4:20119858-20119877 | None:intergenic | 50.0% | |
GTACGTGAGCCTGAATCTGA+AGG | + | chr7_4:20119864-20119883 | Msa1144150:CDS | 50.0% | |
TTCTGCATCATTGAAGGCCC+AGG | + | chr7_4:20120293-20120312 | Msa1144150:intron | 50.0% | |
AGCAGCTCCACTTGCTTTGA+GGG | - | chr7_4:20120385-20120404 | None:intergenic | 50.0% | |
TAGCAGCTCCACTTGCTTTG+AGG | - | chr7_4:20120386-20120405 | None:intergenic | 50.0% | |
ATGCTGTTCTTCGGCGTTGT+GGG | - | chr7_4:20120416-20120435 | None:intergenic | 50.0% | |
AATGGCAATCCAGCACTCTG+AGG | - | chr7_4:20120585-20120604 | None:intergenic | 50.0% | |
CGAGGTCTTAGTAGACTCGA+TGG | + | chr7_4:20120615-20120634 | Msa1144150:CDS | 50.0% | |
AACACCTTGCGGACCAAGAA+AGG | - | chr7_4:20121596-20121615 | None:intergenic | 50.0% | |
! | AACGGGGAGTATGTGAAGAC+AGG | + | chr7_4:20121777-20121796 | Msa1144150:CDS | 50.0% |
TAGGCAAGCAGTTGGATTCC+TGG | + | chr7_4:20121952-20121971 | Msa1144150:CDS | 50.0% | |
! | GAAAGAGAGAAAGCACGCAC+TGG | - | chr7_4:20122115-20122134 | None:intergenic | 50.0% |
ATAGCAGCTGTTCCCAGCTT+GGG | - | chr7_4:20122390-20122409 | None:intergenic | 50.0% | |
TTCTCACGTATCAACGGAGG+AGG | - | chr7_4:20122702-20122721 | None:intergenic | 50.0% | |
GAGTTCTCACGTATCAACGG+AGG | - | chr7_4:20122705-20122724 | None:intergenic | 50.0% | |
CCGTTGATACGTGAGAACTC+AGG | + | chr7_4:20122705-20122724 | Msa1144150:CDS | 50.0% | |
TGGGTTCTTACTAGCTCGCT+CGG | + | chr7_4:20122731-20122750 | Msa1144150:CDS | 50.0% | |
GCCTCTATCGCTCCATCTTA+TGG | + | chr7_4:20122781-20122800 | Msa1144150:three_prime_UTR | 50.0% | |
CCCATAAGATGGAGCGATAG+AGG | - | chr7_4:20122785-20122804 | None:intergenic | 50.0% | |
TCCATCTTATGGGTATCCCC+AGG | + | chr7_4:20122792-20122811 | Msa1144150:three_prime_UTR | 50.0% | |
CCATCTTATGGGTATCCCCA+GGG | + | chr7_4:20122793-20122812 | Msa1144150:three_prime_UTR | 50.0% | |
ATCTTTGTGCAGTCACCCTG+GGG | - | chr7_4:20122811-20122830 | None:intergenic | 50.0% | |
CATCTTTGTGCAGTCACCCT+GGG | - | chr7_4:20122812-20122831 | None:intergenic | 50.0% | |
TGGATCAGGCTCGTAAGGTG+AGG | - | chr7_4:20118957-20118976 | None:intergenic | 55.0% | |
!! | CACTTGCTTTGAGGGTGCGT+TGG | - | chr7_4:20120377-20120396 | None:intergenic | 55.0% |
CAACGCACCCTCAAAGCAAG+TGG | + | chr7_4:20120375-20120394 | Msa1144150:CDS | 55.0% | |
TGCTGTTCTTCGGCGTTGTG+GGG | - | chr7_4:20120415-20120434 | None:intergenic | 55.0% | |
GATGCTGTTCTTCGGCGTTG+TGG | - | chr7_4:20120417-20120436 | None:intergenic | 55.0% | |
!! | ACCTCACCAGCCGGTTTTGT+GGG | + | chr7_4:20120911-20120930 | Msa1144150:intron | 55.0% |
ACACAACCCACAAAACCGGC+TGG | - | chr7_4:20120920-20120939 | None:intergenic | 55.0% | |
AAACCTTGACGGGAGGTCCT+TGG | - | chr7_4:20121382-20121401 | None:intergenic | 55.0% | |
ACCTCCTTTCTTGGTCCGCA+AGG | + | chr7_4:20121589-20121608 | Msa1144150:CDS | 55.0% | |
ACCTTGCGGACCAAGAAAGG+AGG | - | chr7_4:20121593-20121612 | None:intergenic | 55.0% | |
ATGGTGCATCGAGGCAACAG+AGG | + | chr7_4:20121818-20121837 | Msa1144150:CDS | 55.0% | |
CATAGCAGCTGTTCCCAGCT+TGG | - | chr7_4:20122391-20122410 | None:intergenic | 55.0% | |
CTCGGCAACCATAGCTCTCA+TGG | - | chr7_4:20122473-20122492 | None:intergenic | 55.0% | |
CATGAGAGCTATGGTTGCCG+AGG | + | chr7_4:20122471-20122490 | Msa1144150:CDS | 55.0% | |
CCCTGGGGATACCCATAAGA+TGG | - | chr7_4:20122796-20122815 | None:intergenic | 55.0% | |
GCATCTTTGTGCAGTCACCC+TGG | - | chr7_4:20122813-20122832 | None:intergenic | 55.0% | |
GGGTGACTGCACAAAGATGC+AGG | + | chr7_4:20122813-20122832 | Msa1144150:three_prime_UTR | 55.0% | |
AGGGGATCTCCTCAGAGTGC+TGG | + | chr7_4:20120573-20120592 | Msa1144150:CDS | 60.0% | |
CAAAACCGGCTGGTGAGGTG+AGG | - | chr7_4:20120910-20120929 | None:intergenic | 60.0% | |
!! | CACCTCACCAGCCGGTTTTG+TGG | + | chr7_4:20120910-20120929 | Msa1144150:intron | 60.0% |
ACCCACAAAACCGGCTGGTG+AGG | - | chr7_4:20120915-20120934 | None:intergenic | 60.0% | |
! | AGGGCGCTCACATGCTAACG+CGG | + | chr7_4:20121408-20121427 | Msa1144150:CDS | 60.0% |
GTGCATCGAGGCAACAGAGG+AGG | + | chr7_4:20121821-20121840 | Msa1144150:CDS | 60.0% | |
!! | TACAGTACACTGGCTCGGCG+TGG | + | chr7_4:20121912-20121931 | Msa1144150:intron | 60.0% |
!! | ACAGTACACTGGCTCGGCGT+GGG | + | chr7_4:20121913-20121932 | Msa1144150:intron | 60.0% |
GCGATCCTCACCTCACCAGC+CGG | + | chr7_4:20120902-20120921 | Msa1144150:intron | 65.0% | |
GCTCCAAGGACCTCCCGTCA+AGG | + | chr7_4:20121376-20121395 | Msa1144150:CDS | 65.0% | |
!! | GTACACTGGCTCGGCGTGGG+AGG | + | chr7_4:20121916-20121935 | Msa1144150:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 20118384 | 20123303 | 20118384 | ID=Msa1144150;Name=Msa1144150 |
chr7_4 | mRNA | 20118384 | 20123303 | 20118384 | ID=Msa1144150-mRNA-1;Parent=Msa1144150;Name=Msa1144150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.71|0.73|1|1|1|15|545|510 |
chr7_4 | exon | 20118384 | 20118522 | 20118384 | ID=Msa1144150-mRNA-1:exon:4750;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20119513 | 20119592 | 20119513 | ID=Msa1144150-mRNA-1:exon:4751;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20119687 | 20119737 | 20119687 | ID=Msa1144150-mRNA-1:exon:4752;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20119840 | 20119920 | 20119840 | ID=Msa1144150-mRNA-1:exon:4753;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20120018 | 20120161 | 20120018 | ID=Msa1144150-mRNA-1:exon:4754;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20120309 | 20120464 | 20120309 | ID=Msa1144150-mRNA-1:exon:4755;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20120567 | 20120773 | 20120567 | ID=Msa1144150-mRNA-1:exon:4756;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20121376 | 20121513 | 20121376 | ID=Msa1144150-mRNA-1:exon:4757;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20121587 | 20121657 | 20121587 | ID=Msa1144150-mRNA-1:exon:4758;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20121743 | 20121842 | 20121743 | ID=Msa1144150-mRNA-1:exon:4759;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20121917 | 20121973 | 20121917 | ID=Msa1144150-mRNA-1:exon:4760;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20122058 | 20122114 | 20122058 | ID=Msa1144150-mRNA-1:exon:4761;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20122203 | 20122247 | 20122203 | ID=Msa1144150-mRNA-1:exon:4762;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20122460 | 20122542 | 20122460 | ID=Msa1144150-mRNA-1:exon:4763;Parent=Msa1144150-mRNA-1 |
chr7_4 | exon | 20122635 | 20123303 | 20122635 | ID=Msa1144150-mRNA-1:exon:4764;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20118384 | 20118522 | 20118384 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20119513 | 20119592 | 20119513 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20119687 | 20119737 | 20119687 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20119840 | 20119920 | 20119840 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20120018 | 20120161 | 20120018 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20120309 | 20120464 | 20120309 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20120567 | 20120773 | 20120567 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20121376 | 20121513 | 20121376 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20121587 | 20121657 | 20121587 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20121743 | 20121842 | 20121743 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20121917 | 20121973 | 20121917 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20122058 | 20122114 | 20122058 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20122203 | 20122247 | 20122203 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20122460 | 20122542 | 20122460 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | CDS | 20122635 | 20122758 | 20122635 | ID=Msa1144150-mRNA-1:cds;Parent=Msa1144150-mRNA-1 |
chr7_4 | three_prime_UTR | 20122759 | 20123303 | 20122759 | ID=Msa1144150-mRNA-1:three_prime_utr;Parent=Msa1144150-mRNA-1 |
Gene Sequence |
Protein sequence |