AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259830 MtrunA17_Chr2g0332961 76.781 379 56 7 33 406 2 353 2.67e-176 502
Msa0259830 MtrunA17_Chr5g0416271 44.767 516 164 11 8 436 1 482 5.00e-115 350
Msa0259830 MtrunA17_Chr2g0332951 77.974 227 26 3 214 436 1 207 6.89e-111 330
Msa0259830 MtrunA17_Chr2g0325231 53.867 375 111 8 121 437 500 870 1.33e-95 311
Msa0259830 MtrunA17_Chr2g0325231 35.061 328 134 9 28 290 52 365 1.15e-27 118
Msa0259830 MtrunA17_Chr2g0325231 36.207 174 91 2 120 276 450 620 3.65e-15 79.0
Msa0259830 MtrunA17_Chr2g0325231 40.667 150 75 3 133 268 305 454 2.85e-14 76.3
Msa0259830 MtrunA17_Chr2g0325231 32.068 237 85 6 139 301 371 605 4.28e-14 75.5
Msa0259830 MtrunA17_Chr2g0325701 41.513 542 173 12 29 436 58 589 9.06e-87 280
Msa0259830 MtrunA17_Chr6g0471251 45.202 396 141 8 123 445 284 676 1.88e-78 263
Msa0259830 MtrunA17_Chr6g0471251 33.657 309 127 9 23 276 75 360 3.18e-25 110
Msa0259830 MtrunA17_Chr2g0325351 39.138 580 194 15 6 436 16 585 2.95e-77 258
Msa0259830 MtrunA17_Chr2g0325611 42.489 466 192 11 41 445 49 499 3.59e-77 255
Msa0259830 MtrunA17_Chr2g0325861 49.041 365 159 9 88 437 468 820 1.92e-76 259
Msa0259830 MtrunA17_Chr2g0325861 41.045 268 112 10 51 280 65 324 9.74e-29 121
Msa0259830 MtrunA17_Chr2g0325861 30.952 252 139 5 46 276 209 446 3.41e-14 75.9
Msa0259830 MtrunA17_Chr2g0325621 49.702 336 120 6 134 437 241 559 1.70e-72 244
Msa0259830 MtrunA17_Chr2g0333341 49.835 303 116 5 142 435 332 607 3.34e-68 232
Msa0259830 MtrunA17_Chr2g0325661 49.852 337 121 6 139 437 448 774 3.46e-65 228
Msa0259830 MtrunA17_Chr2g0325661 36.306 314 143 8 26 292 78 381 2.25e-35 142
Msa0259830 MtrunA17_Chr2g0325661 38.406 138 74 1 139 276 280 406 1.33e-13 73.9
Msa0259830 MtrunA17_Chr2g0325661 37.748 151 91 1 139 286 336 486 1.19e-12 70.9
Msa0259830 MtrunA17_Chr2g0280141 44.478 335 143 8 139 437 389 716 6.35e-64 224
Msa0259830 MtrunA17_Chr2g0280141 40.690 145 75 2 139 276 305 445 6.37e-15 78.2
Msa0259830 MtrunA17_Chr2g0280141 28.889 225 114 3 98 276 193 417 2.75e-13 73.2
Msa0259830 MtrunA17_Chr2g0325321 45.226 398 159 8 88 436 371 758 1.37e-62 219
Msa0259830 MtrunA17_Chr2g0325321 38.148 270 124 12 33 277 29 280 3.84e-23 103
Msa0259830 MtrunA17_Chr2g0325711 39.192 421 207 9 63 440 324 738 1.03e-60 215
Msa0259830 MtrunA17_Chr2g0325711 34.448 299 149 7 1 277 32 305 1.87e-26 114
Msa0259830 MtrunA17_Chr2g0325711 33.898 177 64 3 139 273 276 441 7.72e-13 71.6
Msa0259830 MtrunA17_Chr2g0325811 38.579 394 164 9 135 456 372 759 2.67e-57 206
Msa0259830 MtrunA17_Chr2g0325811 37.755 294 134 12 18 277 57 335 3.07e-24 107
Msa0259830 MtrunA17_Chr2g0325811 27.341 267 146 6 55 273 205 471 9.59e-12 68.2
Msa0259830 MtrunA17_Chr2g0325361 40.000 455 164 12 88 437 525 975 7.49e-55 200
Msa0259830 MtrunA17_Chr2g0325361 38.071 197 108 4 87 276 496 685 1.49e-22 102
Msa0259830 MtrunA17_Chr2g0325361 40.645 155 75 2 139 276 475 629 5.44e-21 97.8
Msa0259830 MtrunA17_Chr2g0325361 37.017 181 89 3 121 276 323 503 2.15e-14 76.6
Msa0259830 MtrunA17_Chr2g0325361 50.000 94 37 3 49 142 42 125 1.46e-13 73.9
Msa0259830 MtrunA17_Chr2g0325361 38.251 183 78 3 133 280 279 461 4.34e-13 72.4
Msa0259830 MtrunA17_Chr2g0325361 37.931 174 83 5 121 276 365 531 4.58e-12 69.3
Msa0259830 MtrunA17_Chr5g0434761 59.375 160 61 2 279 437 7 163 1.04e-49 172
Msa0259830 MtrunA17_Chr2g0325261 40.426 282 116 5 30 276 39 303 8.33e-46 163
Msa0259830 MtrunA17_Chr2g0325341 40.426 282 116 5 30 276 39 303 8.33e-46 163
Msa0259830 MtrunA17_Chr2g0325651 38.438 320 118 7 30 276 53 366 4.45e-45 164
Msa0259830 MtrunA17_Chr2g0325771 63.006 173 53 3 272 436 3 172 1.47e-44 155
Msa0259830 MtrunA17_Chr2g0325631 60.241 166 49 3 286 437 1 163 9.05e-41 148
Msa0259830 MtrunA17_Chr2g0325331 51.136 176 69 2 286 447 1 173 1.97e-38 139
Msa0259830 MtrunA17_Chr2g0325241 35.013 397 152 10 28 357 66 423 2.02e-37 143
Msa0259830 MtrunA17_Chr5g0434741 38.346 266 119 5 30 257 40 298 3.37e-37 140
Msa0259830 MtrunA17_Chr3g0140591 50.588 170 66 3 281 436 4 169 2.49e-33 125
Msa0259830 MtrunA17_Chr2g0325781 36.879 282 100 10 29 269 57 301 4.65e-33 128
Msa0259830 MtrunA17_Chr2g0325291 54.054 148 65 1 306 453 21 165 5.62e-33 125
Msa0259830 MtrunA17_Chr2g0325741 38.525 244 117 8 33 264 82 304 1.94e-31 124
Msa0259830 MtrunA17_Chr2g0325761 38.144 291 124 7 32 276 79 359 6.56e-28 118
Msa0259830 MtrunA17_Chr2g0325761 40.123 162 82 2 117 274 319 469 1.42e-12 70.5
Msa0259830 MtrunA17_Chr2g0325761 40.171 117 66 1 118 230 467 583 1.15e-11 67.8
Msa0259830 MtrunA17_Chr2g0325221 36.156 307 147 12 6 278 49 340 8.25e-27 115
Msa0259830 MtrunA17_Chr2g0325221 40.936 171 72 3 121 273 316 475 4.00e-19 91.3
Msa0259830 MtrunA17_Chr2g0325221 37.557 221 100 4 87 276 373 586 7.82e-17 84.0
Msa0259830 MtrunA17_Chr7g0235901 33.793 290 119 8 58 289 1 275 1.82e-25 107
Msa0259830 MtrunA17_Chr7g0235901 38.690 168 74 5 121 263 148 311 7.21e-13 69.7
Msa0259830 MtrunA17_Chr7g0235901 35.484 155 83 2 139 276 156 310 9.40e-13 69.3
Msa0259830 MtrunA17_Chr8g0361651 35.052 291 165 7 158 440 32 306 1.48e-24 107
Msa0259830 MtrunA17_Chr2g0325691 41.989 181 60 2 141 276 531 711 1.64e-23 105
Msa0259830 MtrunA17_Chr2g0325691 36.721 305 118 10 29 276 59 345 8.19e-22 99.8
Msa0259830 MtrunA17_Chr2g0325691 41.722 151 81 2 133 276 307 457 1.56e-17 86.3
Msa0259830 MtrunA17_Chr2g0325691 35.443 237 95 6 98 276 321 557 3.67e-16 82.0
Msa0259830 MtrunA17_Chr2g0325691 33.488 215 91 5 121 283 407 621 7.00e-12 68.6
Msa0259830 MtrunA17_Chr2g0333481 48.780 123 31 5 447 569 18 108 3.27e-21 97.4
Msa0259830 MtrunA17_Chr2g0325281 52.727 110 42 3 33 142 29 128 9.51e-21 96.3
Msa0259830 MtrunA17_Chr2g0325281 36.232 207 112 5 81 276 222 419 3.93e-17 84.7
Msa0259830 MtrunA17_Chr2g0325281 45.000 120 63 1 141 257 463 582 9.91e-16 80.5
Msa0259830 MtrunA17_Chr2g0325281 45.614 114 56 2 115 224 463 574 2.08e-13 73.2
Msa0259830 MtrunA17_Chr2g0325281 34.395 157 83 3 154 290 252 408 2.56e-12 69.7
Msa0259830 MtrunA17_Chr4g0044221 33.562 292 149 10 112 368 10 291 1.28e-20 93.2
Msa0259830 MtrunA17_Chr2g0325641 37.850 214 99 4 96 280 102 310 9.12e-20 90.9
Msa0259830 MtrunA17_Chr2g0325641 34.225 187 85 4 140 288 55 241 9.24e-12 66.6
Msa0259830 MtrunA17_Chr2g0327481 46.341 123 34 5 447 569 18 108 1.73e-19 84.7
Msa0259830 MtrunA17_Chr2g0333451 47.154 123 33 5 447 569 18 108 3.29e-19 92.0
Msa0259830 MtrunA17_Chr2g0325721 33.333 282 132 9 33 276 49 312 9.24e-19 89.7
Msa0259830 MtrunA17_Chr2g0325751 42.000 150 59 2 127 276 2 123 1.03e-18 83.6
Msa0259830 MtrunA17_Chr2g0325791 52.174 92 44 0 139 230 65 156 3.24e-18 85.9
Msa0259830 MtrunA17_Chr7g0235921 67.045 88 25 2 350 437 1 84 3.62e-16 74.7
Msa0259830 MtrunA17_Chr5g0434751 34.545 220 64 4 141 280 56 275 2.64e-15 77.0
Msa0259830 MtrunA17_Chr5g0434751 32.967 182 77 3 142 278 1 182 1.02e-12 68.9
Msa0259830 MtrunA17_Chr4g0024061 36.691 139 56 3 302 440 447 553 3.75e-14 75.9
Msa0259830 MtrunA17_Chr2g0325801 48.052 77 32 1 83 159 57 125 3.11e-13 66.6
Msa0259830 MtrunA17_Chr4g0002981 38.983 118 42 4 452 569 21 108 6.47e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259830 AT5G27220.1 30.448 335 192 13 105 431 497 798 8.07e-14 75.5
Msa0259830 AT5G27220.3 30.448 335 192 13 105 431 497 798 8.07e-14 75.5
Msa0259830 AT5G27220.4 30.448 335 192 13 105 431 497 798 1.17e-13 74.7
Msa0259830 AT5G27220.2 30.448 335 192 13 105 431 497 798 1.17e-13 74.7

Find 178 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCAATATTTCTCTTTA+TGG 0.075175 2_2:-57170028 None:intergenic
CTTCGTCAAGCAAGTAAATT+TGG 0.111151 2_2:+57168797 Msa0259830:five_prime_UTR
CCTACTACATTGGATCATTT+AGG 0.163516 2_2:+57168877 Msa0259830:five_prime_UTR
TATATATGTTATAGATTCTT+TGG 0.190740 2_2:+57169566 Msa0259830:intron
TATGGAAAATGGATGTTTAT+TGG 0.215467 2_2:+57173421 Msa0259830:CDS
CTGTTTCAGGGTTGTGGTTT+TGG 0.223844 2_2:+57173363 Msa0259830:intron
CTAGTGCTGATTTGATTAAA+TGG 0.234024 2_2:+57174300 Msa0259830:three_prime_UTR
GTAGCAACTTCACTAGAATT+TGG 0.247308 2_2:-57174329 None:intergenic
CTTCGTTGAATATGAATAAA+AGG 0.247349 2_2:+57169890 Msa0259830:CDS
TACACAATCAATTGAAATTA+TGG 0.250565 2_2:+57168823 Msa0259830:five_prime_UTR
AGAAAATACTGAAAATTCTT+TGG 0.251631 2_2:+57171124 Msa0259830:CDS
CTACTACATTGGATCATTTA+GGG 0.260405 2_2:+57168878 Msa0259830:five_prime_UTR
TTAATACTCATTTGTGTAGA+TGG 0.261231 2_2:+57174552 Msa0259830:three_prime_UTR
AGATCCAGCAAAACTTGTTT+TGG 0.272394 2_2:+57170929 Msa0259830:CDS
ACAGCTTTGTCTCCCTTCTT+AGG 0.285668 2_2:-57170981 None:intergenic
CTGCAAAGAGCTAGAAAATA+AGG 0.286190 2_2:+57170053 Msa0259830:CDS
GAGTCAAAGCTGAATAATTT+TGG 0.290126 2_2:+57170423 Msa0259830:CDS
AGTTTCTAACACGTCCTATC+TGG 0.291974 2_2:+57174730 Msa0259830:three_prime_UTR
TAGTGAACTATATGGGAAAT+AGG 0.293293 2_2:+57167924 None:intergenic
AACCACTGTTTCAAGGTTAA+AGG 0.302599 2_2:+57169156 Msa0259830:five_prime_UTR
CTTACACAAGATTTAATATC+TGG 0.303638 2_2:-57171056 None:intergenic
AAGAGGGATTGCATCATCTT+TGG 0.313163 2_2:+57173776 Msa0259830:CDS
GATGGAACAAGTGAGGAATT+TGG 0.315869 2_2:+57170879 Msa0259830:CDS
ACAATACTTGTGCGTGATTC+GGG 0.321400 2_2:-57172693 None:intergenic
CAGACTCAAGTTCCTTAACT+TGG 0.324284 2_2:-57170080 None:intergenic
AGATAGCTGTAAAGCTGTTT+AGG 0.328283 2_2:+57171255 Msa0259830:CDS
AATTTATAATAAAACAAGTT+TGG 0.328738 2_2:+57174685 Msa0259830:three_prime_UTR
TTCAATTTCGTACTAGTGAT+TGG 0.332218 2_2:+57172649 Msa0259830:CDS
ACAGTGTTCCAGCATATAAC+AGG 0.338594 2_2:+57169290 Msa0259830:five_prime_UTR
TCATTTAGGGTTAGATTTGT+AGG 0.342647 2_2:+57168891 Msa0259830:five_prime_UTR
GGGTTCCTTACTTCAGCAAT+AGG 0.351051 2_2:+57168720 Msa0259830:five_prime_UTR
CTGAAACTTGAGACTGTGTT+TGG 0.363089 2_2:-57169257 None:intergenic
CAAATGCAATTTACCGAAAT+AGG 0.364134 2_2:+57169088 Msa0259830:five_prime_UTR
TCCTTTCAGAGTCCTGTGAT+TGG 0.368551 2_2:+57172622 Msa0259830:intron
GTCCAACCCTAGACCTATTT+CGG 0.368933 2_2:-57169101 None:intergenic
TCAAAAGAGGAGGAATTTAA+AGG 0.372635 2_2:+57170267 Msa0259830:CDS
GTCATATATAGTGAACTATA+TGG 0.373142 2_2:+57167916 None:intergenic
CTTGGAAAGCAACAATTCCT+TGG 0.374250 2_2:+57169801 Msa0259830:CDS
CAATTCAGTATCACCATTGA+TGG 0.374340 2_2:+57170861 Msa0259830:CDS
AGCTGCTATTCAATTGGTTA+AGG 0.381444 2_2:+57174520 Msa0259830:three_prime_UTR
CTGTCAAATAACCTCTTAAC+TGG 0.388338 2_2:-57169769 None:intergenic
GACAATACTTGTGCGTGATT+CGG 0.388703 2_2:-57172694 None:intergenic
TTATCGATGGCGACGATGTC+AGG 0.391493 2_2:+57169317 Msa0259830:exon
GAAAATTCTTTGGAGGTTCT+CGG 0.397484 2_2:+57171134 Msa0259830:CDS
AGGACGTGTTAGAAACTCAT+AGG 0.402018 2_2:-57174724 None:intergenic
TTCCTCACTTGTTCCATCAA+TGG 0.405596 2_2:-57170874 None:intergenic
AATTTCAGTATGATTACAAC+TGG 0.408474 2_2:+57173945 Msa0259830:intron
ATTATAAATTTATGATATGA+AGG 0.409406 2_2:-57174672 None:intergenic
TTGTCTCCCTTCTTAGGCAG+TGG 0.411661 2_2:-57170975 None:intergenic
TTCTTAGGCAGTGGAATCGT+GGG 0.412112 2_2:-57170966 None:intergenic
ACTCTAAGCTGCTATTCAAT+TGG 0.415525 2_2:+57174514 Msa0259830:three_prime_UTR
TAATACTCATTTGTGTAGAT+GGG 0.416368 2_2:+57174553 Msa0259830:three_prime_UTR
CCTCTTGGTTGTGGTGAAGA+GGG 0.417703 2_2:+57173760 Msa0259830:CDS
TGCATGCTGTTTCAGGGTTG+TGG 0.417899 2_2:+57173357 Msa0259830:intron
TCTGAAAAGAATATACTTGA+TGG 0.418087 2_2:+57170099 Msa0259830:CDS
TTGATTCGTTGGTAAATTGT+TGG 0.419166 2_2:-57174026 None:intergenic
TTGGGTCCTACCTACTACAT+TGG 0.425517 2_2:+57168867 Msa0259830:five_prime_UTR
CAATTTACCGAAATAGGTCT+AGG 0.428831 2_2:+57169094 Msa0259830:five_prime_UTR
TTCGTACTAGTGATTGGAGT+TGG 0.431108 2_2:+57172655 Msa0259830:CDS
TTCGTCAAGCAAGTAAATTT+GGG 0.431447 2_2:+57168798 Msa0259830:five_prime_UTR
GAAGGAAGAAGTAGATCAAA+AGG 0.433938 2_2:+57169629 Msa0259830:CDS
TTGGATTTAACAGCACGAAC+TGG 0.436687 2_2:+57169585 Msa0259830:CDS
AATTGTTGGCCACAGGGTCC+TGG 0.438116 2_2:-57174012 None:intergenic
CCTAAATGATCCAATGTAGT+AGG 0.439479 2_2:-57168877 None:intergenic
CTTTGAGATTGTCCTCAGCT+TGG 0.447230 2_2:-57170353 None:intergenic
AAATAAGGAGACCCAAGTTA+AGG 0.448359 2_2:+57170068 Msa0259830:CDS
ATTTGACAGCAACAATTCCT+TGG 0.450325 2_2:+57169783 Msa0259830:CDS
TCAGATTTAAGAATCCAGAT+AGG 0.450923 2_2:-57174744 None:intergenic
GTCGATGTTGAGTCAGTCCC+AGG 0.451314 2_2:+57168938 Msa0259830:five_prime_UTR
CAAGGAATTGTTGCTTTCCA+AGG 0.451728 2_2:-57169800 None:intergenic
ACATTTCGCGAGCCGACAAA+AGG 0.460184 2_2:+57170194 Msa0259830:CDS
GGAATTTGAATCAAAAGAAA+AGG 0.461737 2_2:+57170215 Msa0259830:CDS
CTACTGCACTGCCAGTTAAG+AGG 0.461854 2_2:+57169758 Msa0259830:CDS
TCCTCTTGGTTGTGGTGAAG+AGG 0.463765 2_2:+57173759 Msa0259830:CDS
TGGCCACAGGGTCCTGGACC+CGG 0.463853 2_2:-57174006 None:intergenic
CACGATTCCACTGCCTAAGA+AGG 0.465950 2_2:+57170968 Msa0259830:CDS
ATCAGCCTATTGCTGAAGTA+AGG 0.468485 2_2:-57168725 None:intergenic
TCAGATTGAAGTACAAATCA+AGG 0.469530 2_2:+57170395 Msa0259830:CDS
GTTGGTAAATTGTTGGCCAC+AGG 0.469858 2_2:-57174019 None:intergenic
CTGATTCAAAGTTCTTCACT+AGG 0.474701 2_2:-57170164 None:intergenic
AAATTATTCAGCTTTGACTC+AGG 0.479176 2_2:-57170420 None:intergenic
GTAAAGCTGTTTAGGACCCT+GGG 0.479502 2_2:+57171263 Msa0259830:CDS
CTCTGATTCAGTTTCGAAGA+GGG 0.480374 2_2:-57169189 None:intergenic
ATGGAACACACTCAGATGCT+TGG 0.482211 2_2:+57168608 Msa0259830:five_prime_UTR
AAATACTGAAAATTCTTTGG+AGG 0.482682 2_2:+57171127 Msa0259830:CDS
TGGAACACACTCAGATGCTT+GGG 0.484164 2_2:+57168609 Msa0259830:five_prime_UTR
TGTAAAGCTGTTTAGGACCC+TGG 0.484740 2_2:+57171262 Msa0259830:CDS
GTCGTGGAACCACTGTTTCA+AGG 0.485473 2_2:+57169149 Msa0259830:five_prime_UTR
AATCATTTGAGGAATGCAAC+GGG 0.489095 2_2:+57169974 Msa0259830:CDS
AGTGTTTGAAGCAAAGGAAG+AGG 0.504885 2_2:+57170299 Msa0259830:CDS
GAATTATCAGCTGATTTGCC+TGG 0.507013 2_2:-57169913 None:intergenic
GGAATTTGAAAGAAGAGTGA+AGG 0.507055 2_2:+57170236 Msa0259830:CDS
TGTTGGTTGCATTTGCCTGT+TGG 0.507831 2_2:-57168586 None:intergenic
GCAACAGTTTATGAGCCAAC+AGG 0.508304 2_2:+57168571 Msa0259830:five_prime_UTR
TTGGCCCTAGCCTCTGATCC+AGG 0.511680 2_2:+57174050 Msa0259830:exon
AAATTGAGGCATAGATAAAA+CGG 0.514123 2_2:+57169224 Msa0259830:five_prime_UTR
TCATATATAGTGAACTATAT+GGG 0.514265 2_2:+57167917 None:intergenic
GTTTACAGCTGCAACAAGTC+AGG 0.515862 2_2:+57173828 Msa0259830:CDS
TTGAATATGAATAAAAGGCC+AGG 0.518437 2_2:+57169895 Msa0259830:CDS
AATTTACCAACGAATCAAGT+TGG 0.519521 2_2:+57174031 Msa0259830:CDS
CTAGGGCCAACTTGATTCGT+TGG 0.520186 2_2:-57174037 None:intergenic
CACCACTGTCTACCATCTCC+AGG 0.520400 2_2:+57167971 Msa0259830:five_prime_UTR
AGACTCAAGTTCCTTAACTT+GGG 0.522775 2_2:-57170079 None:intergenic
CACGAACTGGACAGCCAAGT+GGG 0.524603 2_2:+57169598 Msa0259830:CDS
CTTCTTAGGCAGTGGAATCG+TGG 0.525924 2_2:-57170967 None:intergenic
AAATAGGTCTAGGGTTGGAC+AGG 0.529285 2_2:+57169104 Msa0259830:five_prime_UTR
ACATCTTCTCTTCAAACCGC+AGG 0.530472 2_2:-57173807 None:intergenic
AGATGTCTTCCTCTTGGTTG+TGG 0.533622 2_2:+57173751 Msa0259830:CDS
AAACTGAATCAGAGGCGGGC+AGG 0.535383 2_2:+57169198 Msa0259830:five_prime_UTR
GATGGCTAGACACCGGGTCC+AGG 0.535555 2_2:+57173994 Msa0259830:CDS
CTGATTTGCAGCAATCACAT+AGG 0.539868 2_2:+57168648 Msa0259830:five_prime_UTR
TTCGAAACTGAATCAGAGGC+GGG 0.540211 2_2:+57169194 Msa0259830:five_prime_UTR
TGAGAGGATTTCATTGATTG+TGG 0.540392 2_2:-57168473 None:intergenic
CCATGTGGAAAAGCCTTGAG+AGG 0.553555 2_2:-57168489 None:intergenic
GCAACTTCACTAGAATTTGG+AGG 0.556939 2_2:-57174326 None:intergenic
GCTAACCTGGATCAGAGGCT+AGG 0.558312 2_2:-57174055 None:intergenic
AAATAGAAGAGTGGCGATTG+TGG 0.559419 2_2:+57170004 Msa0259830:CDS
AATTTATGATATGAAGGGTA+GGG 0.561012 2_2:-57174666 None:intergenic
CATCTGAGTGTGTTCCATGT+TGG 0.565465 2_2:-57168603 None:intergenic
TTGGTAAATTGTTGGCCACA+GGG 0.565907 2_2:-57174018 None:intergenic
TACCGAAATAGGTCTAGGGT+TGG 0.567009 2_2:+57169099 Msa0259830:five_prime_UTR
CTAACCTGGATCAGAGGCTA+GGG 0.567094 2_2:-57174054 None:intergenic
GAAGGAGTTCCAGTCAAAAG+AGG 0.567276 2_2:+57170254 Msa0259830:CDS
ACTTGTGATGAGATATGCAT+CGG 0.568894 2_2:+57168699 Msa0259830:five_prime_UTR
TTTCAACATAGACTGAATAG+AGG 0.572020 2_2:+57174465 Msa0259830:three_prime_UTR
AGTGAAAGTGTTTGAAGCAA+AGG 0.574401 2_2:+57170293 Msa0259830:CDS
TTTCTTAACAGAAAATTCCA+AGG 0.575654 2_2:-57169818 None:intergenic
CAATCAATGAAATCCTCTCA+AGG 0.576073 2_2:+57168476 Msa0259830:five_prime_UTR
AAATCATTTGAGGAATGCAA+CGG 0.576495 2_2:+57169973 Msa0259830:CDS
ATGCATATCTCATCACAAGT+TGG 0.578892 2_2:-57168696 None:intergenic
AATACTCATTTGTGTAGATG+GGG 0.580870 2_2:+57174554 Msa0259830:three_prime_UTR
AAATTTATGATATGAAGGGT+AGG 0.581099 2_2:-57174667 None:intergenic
AATTTACCGAAATAGGTCTA+GGG 0.584576 2_2:+57169095 Msa0259830:five_prime_UTR
TCAAACGATGGCTAGACACC+GGG 0.587136 2_2:+57173988 Msa0259830:CDS
CATCTTCTCTTCAAACCGCA+GGG 0.594174 2_2:-57173806 None:intergenic
TACCTTTAACCTTGAAACAG+TGG 0.594206 2_2:-57169158 None:intergenic
ACGATTCCACTGCCTAAGAA+GGG 0.594525 2_2:+57170969 Msa0259830:CDS
TTATAAATTTATGATATGAA+GGG 0.594645 2_2:-57174671 None:intergenic
AGGCGGGCAGGTCAAAATTG+AGG 0.596016 2_2:+57169210 Msa0259830:five_prime_UTR
CTTGTGATGAGATATGCATC+GGG 0.597268 2_2:+57168700 Msa0259830:five_prime_UTR
TAAATGCTAACCTGGATCAG+AGG 0.598403 2_2:-57174060 None:intergenic
ATATGCAGATACATCTAACA+TGG 0.600498 2_2:+57170833 Msa0259830:intron
CCTCTTCGAAACTGAATCAG+AGG 0.603859 2_2:+57169190 Msa0259830:five_prime_UTR
AGATCGCGCTGATTGAACAA+TGG 0.605086 2_2:+57168529 Msa0259830:five_prime_UTR
CCTCTGATTCAGTTTCGAAG+AGG 0.606640 2_2:-57169190 None:intergenic
TAGTAAGTTGCTTCAAACGA+TGG 0.610073 2_2:+57173976 Msa0259830:CDS
TTTCAAGGTTAAAGGTAGAA+CGG 0.611327 2_2:+57169164 Msa0259830:five_prime_UTR
AATGATCCAATGTAGTAGGT+AGG 0.611553 2_2:-57168873 None:intergenic
AAATTGAACTCTCCAATCAC+AGG 0.611839 2_2:-57172634 None:intergenic
AATTGAAATTATGGCTCCAG+AGG 0.613530 2_2:+57168832 Msa0259830:five_prime_UTR
TTCAAACGATGGCTAGACAC+CGG 0.617499 2_2:+57173987 Msa0259830:CDS
GGACGTGTTAGAAACTCATA+GGG 0.620582 2_2:-57174723 None:intergenic
ACAGGCAAATGCAACCAACA+TGG 0.621822 2_2:+57168589 Msa0259830:five_prime_UTR
CTTCGAAACTGAATCAGAGG+CGG 0.621827 2_2:+57169193 Msa0259830:five_prime_UTR
GGAGTTCCAGTCAAAAGAGG+AGG 0.625446 2_2:+57170257 Msa0259830:CDS
ACGAACTGGACAGCCAAGTG+GGG 0.626248 2_2:+57169599 Msa0259830:CDS
GACTTTATGTACAAAACCCA+GGG 0.629177 2_2:-57171279 None:intergenic
GCAAAGGAAGAGGAATTCGA+AGG 0.634363 2_2:+57170309 Msa0259830:CDS
CAGTGTTCCAGCATATAACA+GGG 0.634366 2_2:+57169291 Msa0259830:five_prime_UTR
CACCATTGATGGAACAAGTG+AGG 0.634662 2_2:+57170872 Msa0259830:CDS
TGCAAGTTCTTTCCTCAGCG+AGG 0.638740 2_2:-57169941 None:intergenic
GTAGAAATGAAACCTGGAGA+TGG 0.639359 2_2:-57167983 None:intergenic
AGACTTTATGTACAAAACCC+AGG 0.639555 2_2:-57171280 None:intergenic
GGAATCAACAAATAGAAGAG+TGG 0.642926 2_2:+57169995 Msa0259830:CDS
GCACGAACTGGACAGCCAAG+TGG 0.645283 2_2:+57169597 Msa0259830:CDS
CCCTCTTCACCACAACCAAG+AGG 0.652179 2_2:-57173760 None:intergenic
ACTAGTGATTGGAGTTGGAG+AGG 0.652499 2_2:+57172660 Msa0259830:CDS
TGGCTCATAAACTGTTGCTG+CGG 0.661809 2_2:-57168566 None:intergenic
GCAATTTGAAAACCAAGCTG+AGG 0.662165 2_2:+57170341 Msa0259830:CDS
CGAACTGGACAGCCAAGTGG+GGG 0.663711 2_2:+57169600 Msa0259830:CDS
AAATCAGCAACATTATTCTG+TGG 0.667333 2_2:-57168632 None:intergenic
TCTTAGGCAGTGGAATCGTG+GGG 0.670339 2_2:-57170965 None:intergenic
CTGGAGATGGTAGACAGTGG+TGG 0.673456 2_2:-57167970 None:intergenic
ACACCGGGTCCAGGACCCTG+TGG 0.680021 2_2:+57174003 Msa0259830:CDS
TCGATGTTGAGTCAGTCCCA+GGG 0.685577 2_2:+57168939 Msa0259830:five_prime_UTR
ATCTTTGGAAGATTGCCCTG+CGG 0.716047 2_2:+57173791 Msa0259830:CDS
AATTGATGAGAATTTCCATG+TGG 0.726139 2_2:-57168504 None:intergenic
AACCTGGAGATGGTAGACAG+TGG 0.836787 2_2:-57167973 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATTTTAAAAAAATT+AGG - chr2_2:57174251-57174270 None:intergenic 0.0%
!! AACATATATATTATGATAAA+CGG - chr2_2:57169556-57169575 None:intergenic 10.0%
!! TTATAAATTTATGATATGAA+GGG - chr2_2:57174674-57174693 None:intergenic 10.0%
!! ATTATAAATTTATGATATGA+AGG - chr2_2:57174675-57174694 None:intergenic 10.0%
!! AATTTATAATAAAACAAGTT+TGG + chr2_2:57174685-57174704 Msa0259830:three_prime_UTR 10.0%
!! TATATATGTTATAGATTCTT+TGG + chr2_2:57169566-57169585 Msa0259830:intron 15.0%
!! ATTAATAAGATATTAGATCT+AGG + chr2_2:57171706-57171725 Msa0259830:intron 15.0%
!!! CTTTTGTATTTTAATTTTCA+AGG + chr2_2:57172149-57172168 Msa0259830:intron 15.0%
!! ATACGAATATAACATTTAAA+AGG - chr2_2:57172583-57172602 None:intergenic 15.0%
!!! TTTCTTTTCTTATAAAAAAG+AGG - chr2_2:57172865-57172884 None:intergenic 15.0%
!! AGAAAAATATATGTATGATA+AGG + chr2_2:57172880-57172899 Msa0259830:intron 15.0%
!! TTAAAAAAATTAGGATGATA+GGG - chr2_2:57174242-57174261 None:intergenic 15.0%
!! TTTAAAAAAATTAGGATGAT+AGG - chr2_2:57174243-57174262 None:intergenic 15.0%
!! TAAAAAACTTAAATAAATGC+AGG - chr2_2:57174600-57174619 None:intergenic 15.0%
!! GATGGATATAACATTTAAAA+GGG - chr2_2:57168008-57168027 None:intergenic 20.0%
!! AATCAATTATTCTCCAAATT+TGG - chr2_2:57168212-57168231 None:intergenic 20.0%
!! TACTAAAAAACAGTTTAGTT+TGG + chr2_2:57168301-57168320 Msa0259830:intron 20.0%
!!! ACTAAAAAACAGTTTAGTTT+GGG + chr2_2:57168302-57168321 Msa0259830:intron 20.0%
!!! GTTAGAGAATTATACATTTT+TGG + chr2_2:57168342-57168361 Msa0259830:intron 20.0%
!! TACACAATCAATTGAAATTA+TGG + chr2_2:57168823-57168842 Msa0259830:five_prime_UTR 20.0%
!!! TAACATTTTAGTTAATTGCA+AGG + chr2_2:57169056-57169075 Msa0259830:five_prime_UTR 20.0%
!! AATGAAATAAGATGATTATC+AGG - chr2_2:57169425-57169444 None:intergenic 20.0%
!! TAAATTCTGTAGTTAAATGA+TGG + chr2_2:57169705-57169724 Msa0259830:intron 20.0%
!!! ATTTTCTGTTAAGAAATCAA+AGG + chr2_2:57169825-57169844 Msa0259830:CDS 20.0%
!! ATTGTTGAAAAAATCATTTG+AGG + chr2_2:57169963-57169982 Msa0259830:CDS 20.0%
!! AGAAAATACTGAAAATTCTT+TGG + chr2_2:57171124-57171143 Msa0259830:CDS 20.0%
!! TTAGATACAAAATTGCAATA+TGG - chr2_2:57171395-57171414 None:intergenic 20.0%
!!! TCTTTTATGTTGTTTTAGAT+TGG + chr2_2:57171420-57171439 Msa0259830:intron 20.0%
!! TATTAATCTTAGTATCTTTG+TGG - chr2_2:57171693-57171712 None:intergenic 20.0%
!!! TATCTCTTTCATTTTCTAAA+TGG + chr2_2:57171872-57171891 Msa0259830:intron 20.0%
!! ATTTCTTAACAAAATTTGCA+AGG - chr2_2:57172002-57172021 None:intergenic 20.0%
!! AGAAATTTGATTCAGTTAAT+TGG + chr2_2:57172030-57172049 Msa0259830:intron 20.0%
!! AAAGAAATAAGAGCTAATAT+GGG + chr2_2:57172313-57172332 Msa0259830:intron 20.0%
!!! ACGAATCAATTTTCAAATTT+CGG + chr2_2:57172450-57172469 Msa0259830:intron 20.0%
!! AACATTTAAAAGGTAATTAG+TGG - chr2_2:57172573-57172592 None:intergenic 20.0%
!!! TAAAACTAAAGCTTACATTT+TGG - chr2_2:57172721-57172740 None:intergenic 20.0%
!!! TGTAAGCTTTAGTTTTAATA+CGG + chr2_2:57172724-57172743 Msa0259830:intron 20.0%
!!! TCTCAATTTCTTATGTTTTA+TGG + chr2_2:57173403-57173422 Msa0259830:CDS 20.0%
!!! TTCTTATGTTTTATGGAAAA+TGG + chr2_2:57173410-57173429 Msa0259830:CDS 20.0%
!!! ATAATAAATTGATAATCACG+AGG - chr2_2:57173872-57173891 None:intergenic 20.0%
!! TTGTAATCATACTGAAATTA+GGG - chr2_2:57173944-57173963 None:intergenic 20.0%
! GGATGGATATAACATTTAAA+AGG - chr2_2:57168009-57168028 None:intergenic 25.0%
!! ATAATTGATTCACACTAGAT+AGG + chr2_2:57168222-57168241 Msa0259830:intron 25.0%
!! ATTGATTCATAAACGAAGAA+TGG - chr2_2:57168420-57168439 None:intergenic 25.0%
!!! TCTGATCTTTGTTTTATTAG+AGG - chr2_2:57168998-57169017 None:intergenic 25.0%
! AAATTGAGGCATAGATAAAA+CGG + chr2_2:57169224-57169243 Msa0259830:five_prime_UTR 25.0%
! AATCAGGATAGCATATAATA+GGG + chr2_2:57169348-57169367 Msa0259830:intron 25.0%
! TTATCAGGATTTAAAGAAAC+AGG - chr2_2:57169410-57169429 None:intergenic 25.0%
! AAGGATAAACATTCGATAAA+TGG - chr2_2:57169482-57169501 None:intergenic 25.0%
! TTAAGATGGCAAAAAATTGA+AGG - chr2_2:57169501-57169520 None:intergenic 25.0%
!! CTTTATTTCTTCAGTGAATA+AGG + chr2_2:57169671-57169690 Msa0259830:intron 25.0%
! TTTCTTAACAGAAAATTCCA+AGG - chr2_2:57169821-57169840 None:intergenic 25.0%
!! CTTTTATTCATATTCAACGA+AGG - chr2_2:57169892-57169911 None:intergenic 25.0%
! CTTCGTTGAATATGAATAAA+AGG + chr2_2:57169890-57169909 Msa0259830:CDS 25.0%
! CTTCTCAATATTTCTCTTTA+TGG - chr2_2:57170031-57170050 None:intergenic 25.0%
! TCTGAAAAGAATATACTTGA+TGG + chr2_2:57170099-57170118 Msa0259830:CDS 25.0%
! AAATGAGCTTGAATCAAAAA+AGG + chr2_2:57170128-57170147 Msa0259830:CDS 25.0%
! AATGAGCTTGAATCAAAAAA+GGG + chr2_2:57170129-57170148 Msa0259830:CDS 25.0%
!! TTGATTCAAATTCCTTTTGT+CGG - chr2_2:57170209-57170228 None:intergenic 25.0%
! GGAATTTGAATCAAAAGAAA+AGG + chr2_2:57170215-57170234 Msa0259830:CDS 25.0%
! TACGATGAAGAAAAAGAATT+TGG + chr2_2:57170483-57170502 Msa0259830:CDS 25.0%
!! CATTTCAACAACAACTTTTA+TGG + chr2_2:57170543-57170562 Msa0259830:intron 25.0%
!! AATAGTCCTATTTGTAGTTT+TGG + chr2_2:57170622-57170641 Msa0259830:intron 25.0%
! TTATAGCCAAAACTACAAAT+AGG - chr2_2:57170631-57170650 None:intergenic 25.0%
! ATAGAAACTTAGTGAATCAT+TGG - chr2_2:57170676-57170695 None:intergenic 25.0%
!! ATATATACTATGAAAGCATG+TGG - chr2_2:57170733-57170752 None:intergenic 25.0%
! ACATAAGCAACAAAAATTGA+AGG - chr2_2:57170777-57170796 None:intergenic 25.0%
! CTTACACAAGATTTAATATC+TGG - chr2_2:57171059-57171078 None:intergenic 25.0%
! AAATACTGAAAATTCTTTGG+AGG + chr2_2:57171127-57171146 Msa0259830:CDS 25.0%
!!! GATTGGCTTTAAATTTTAGT+TGG + chr2_2:57171437-57171456 Msa0259830:intron 25.0%
! TGTAGAACATATTATTTGTG+TGG + chr2_2:57171576-57171595 Msa0259830:intron 25.0%
!!! CATCTAAAAGTATTTGACTT+TGG - chr2_2:57171646-57171665 None:intergenic 25.0%
! ATGATAAGTAAAAACTATGC+AGG + chr2_2:57171663-57171682 Msa0259830:intron 25.0%
! AACAATTGACAAAACTGTTT+GGG - chr2_2:57171779-57171798 None:intergenic 25.0%
! TAACAATTGACAAAACTGTT+TGG - chr2_2:57171780-57171799 None:intergenic 25.0%
!! TTAAGAGAAAATTGACTTCT+TGG + chr2_2:57171797-57171816 Msa0259830:intron 25.0%
!! TAAGAGAAAATTGACTTCTT+GGG + chr2_2:57171798-57171817 Msa0259830:intron 25.0%
!!! CATTTAAACTTCTAGAATGT+AGG - chr2_2:57171961-57171980 None:intergenic 25.0%
!! AAAAACTTGTTCATTCTTGT+CGG - chr2_2:57172056-57172075 None:intergenic 25.0%
!! CATTTTCACATTCAACTTAA+AGG - chr2_2:57172241-57172260 None:intergenic 25.0%
! CAAAGAAATAAGAGCTAATA+TGG + chr2_2:57172312-57172331 Msa0259830:intron 25.0%
!! TTTTCAAATTTCGGTTAAGT+TGG + chr2_2:57172459-57172478 Msa0259830:intron 25.0%
! CTTATTCAATTTAGACCTTT+AGG + chr2_2:57173218-57173237 Msa0259830:intron 25.0%
! TATGGAAAATGGATGTTTAT+TGG + chr2_2:57173421-57173440 Msa0259830:CDS 25.0%
! TCTTGATATGTTATTGTCAT+TGG - chr2_2:57173670-57173689 None:intergenic 25.0%
! GTTGTAATCATACTGAAATT+AGG - chr2_2:57173945-57173964 None:intergenic 25.0%
! AATTTCAGTATGATTACAAC+TGG + chr2_2:57173945-57173964 Msa0259830:intron 25.0%
!! TGATAAGGACATTTCATTTT+CGG + chr2_2:57174386-57174405 Msa0259830:three_prime_UTR 25.0%
! TTAATACTCATTTGTGTAGA+TGG + chr2_2:57174552-57174571 Msa0259830:three_prime_UTR 25.0%
! TAATACTCATTTGTGTAGAT+GGG + chr2_2:57174553-57174572 Msa0259830:three_prime_UTR 25.0%
!!! TTTTGAGTCCTTTTGTTTTT+GGG + chr2_2:57174643-57174662 Msa0259830:three_prime_UTR 25.0%
! AATTTATGATATGAAGGGTA+GGG - chr2_2:57174669-57174688 None:intergenic 25.0%
! AAATTTATGATATGAAGGGT+AGG - chr2_2:57174670-57174689 None:intergenic 25.0%
TTCACTTTGACTGAATTCAA+AGG + chr2_2:57168121-57168140 Msa0259830:intron 30.0%
ATCTTCCAGGGAAAAATAAT+AGG + chr2_2:57168167-57168186 Msa0259830:intron 30.0%
!!! ACATTTTTGGTATGCTTTCT+AGG + chr2_2:57168355-57168374 Msa0259830:intron 30.0%
AATTGATGAGAATTTCCATG+TGG - chr2_2:57168507-57168526 None:intergenic 30.0%
AAATCAGCAACATTATTCTG+TGG - chr2_2:57168635-57168654 None:intergenic 30.0%
TTCGTCAAGCAAGTAAATTT+GGG + chr2_2:57168798-57168817 Msa0259830:five_prime_UTR 30.0%
!!! CAGAGGTAGTCATATTTTTT+GGG + chr2_2:57168849-57168868 Msa0259830:five_prime_UTR 30.0%
CTACTACATTGGATCATTTA+GGG + chr2_2:57168878-57168897 Msa0259830:five_prime_UTR 30.0%
! TCATTTAGGGTTAGATTTGT+AGG + chr2_2:57168891-57168910 Msa0259830:five_prime_UTR 30.0%
!! GTGAAAGCGTAAAGTTTTTA+AGG + chr2_2:57168916-57168935 Msa0259830:five_prime_UTR 30.0%
GCAAAGAAAAAGATGATCTA+CGG + chr2_2:57168972-57168991 Msa0259830:five_prime_UTR 30.0%
CAAATGCAATTTACCGAAAT+AGG + chr2_2:57169088-57169107 Msa0259830:five_prime_UTR 30.0%
AATTTACCGAAATAGGTCTA+GGG + chr2_2:57169095-57169114 Msa0259830:five_prime_UTR 30.0%
TAAGAGAAAAAATCAAGTCG+TGG + chr2_2:57169133-57169152 Msa0259830:five_prime_UTR 30.0%
TTTCAAGGTTAAAGGTAGAA+CGG + chr2_2:57169164-57169183 Msa0259830:five_prime_UTR 30.0%
ATAAAAACCCTGTTATATGC+TGG - chr2_2:57169301-57169320 None:intergenic 30.0%
! TATAACAGGGTTTTTATCGA+TGG + chr2_2:57169304-57169323 Msa0259830:exon 30.0%
CAATCAGGATAGCATATAAT+AGG + chr2_2:57169347-57169366 Msa0259830:intron 30.0%
! TTTTGCCATCTTAATGCTTT+TGG + chr2_2:57169507-57169526 Msa0259830:intron 30.0%
! TTTGCCATCTTAATGCTTTT+GGG + chr2_2:57169508-57169527 Msa0259830:intron 30.0%
!! TATTCCCAAAAGCATTAAGA+TGG - chr2_2:57169515-57169534 None:intergenic 30.0%
!! TTAATGCTTTTGGGAATATG+CGG + chr2_2:57169517-57169536 Msa0259830:intron 30.0%
TTATGATAAACGGTACAACA+GGG - chr2_2:57169546-57169565 None:intergenic 30.0%
ATTATGATAAACGGTACAAC+AGG - chr2_2:57169547-57169566 None:intergenic 30.0%
TAATGCTTCTGTTTAGAAGA+TGG + chr2_2:57169732-57169751 Msa0259830:intron 30.0%
TTGAATATGAATAAAAGGCC+AGG + chr2_2:57169895-57169914 Msa0259830:CDS 30.0%
AAATCATTTGAGGAATGCAA+CGG + chr2_2:57169973-57169992 Msa0259830:CDS 30.0%
TCAAAAAAGGGTGAATTTGA+TGG + chr2_2:57170141-57170160 Msa0259830:CDS 30.0%
TCAAAAGAGGAGGAATTTAA+AGG + chr2_2:57170267-57170286 Msa0259830:CDS 30.0%
! CAATCTGATTCTCTTTTAAC+TGG - chr2_2:57170383-57170402 None:intergenic 30.0%
TCAGATTGAAGTACAAATCA+AGG + chr2_2:57170395-57170414 Msa0259830:CDS 30.0%
! AAATTATTCAGCTTTGACTC+AGG - chr2_2:57170423-57170442 None:intergenic 30.0%
! GAGTCAAAGCTGAATAATTT+TGG + chr2_2:57170423-57170442 Msa0259830:CDS 30.0%
! TCAAAGCTGAATAATTTTGG+TGG + chr2_2:57170426-57170445 Msa0259830:CDS 30.0%
!! TAATTTTGGTGGACAACTAA+AGG + chr2_2:57170437-57170456 Msa0259830:CDS 30.0%
TATGTGTGTGATATAGAAAC+TGG - chr2_2:57170603-57170622 None:intergenic 30.0%
CAAAAATTGAAGGTGACAAT+AGG - chr2_2:57170767-57170786 None:intergenic 30.0%
ATATGCAGATACATCTAACA+TGG + chr2_2:57170833-57170852 Msa0259830:intron 30.0%
! ATATCCAAAACAAGTTTTGC+TGG - chr2_2:57170936-57170955 None:intergenic 30.0%
!!! CTGATGATTTTGTCGATTTA+TGG + chr2_2:57171161-57171180 Msa0259830:CDS 30.0%
TGTACAAATGTTCCTGAAAT+AGG + chr2_2:57171600-57171619 Msa0259830:intron 30.0%
GATATTAGATCTAGGTAACT+TGG + chr2_2:57171714-57171733 Msa0259830:intron 30.0%
CAAAATTGAACTCATGCAAT+TGG + chr2_2:57171739-57171758 Msa0259830:intron 30.0%
ACAATTGACAAAACTGTTTG+GGG - chr2_2:57171778-57171797 None:intergenic 30.0%
TCTTAACAAAATTTGCAAGG+TGG - chr2_2:57171999-57172018 None:intergenic 30.0%
TATTGTTGAAACCTGCTAAT+AGG + chr2_2:57172090-57172109 Msa0259830:intron 30.0%
! TAGCTCTTATTTCTTTGAGA+TGG - chr2_2:57172309-57172328 None:intergenic 30.0%
!!! CTCTTATTTTATCCTCACTT+TGG - chr2_2:57172510-57172529 None:intergenic 30.0%
TTCAATTTCGTACTAGTGAT+TGG + chr2_2:57172649-57172668 Msa0259830:CDS 30.0%
ATTGATATGATTCCATAGAC+TGG + chr2_2:57172817-57172836 Msa0259830:intron 30.0%
! GCAACATTTCATTAGGTTTT+CGG + chr2_2:57172839-57172858 Msa0259830:intron 30.0%
! GAAATTTTCTTGGCAACATT+AGG - chr2_2:57173479-57173498 None:intergenic 30.0%
GTTGCCAAGAAAATTTCTTA+AGG + chr2_2:57173482-57173501 Msa0259830:intron 30.0%
! TCCTCCTTAAGAAATTTTCT+TGG - chr2_2:57173489-57173508 None:intergenic 30.0%
! TCCATTCTACTTCCTATTTT+TGG + chr2_2:57173564-57173583 Msa0259830:intron 30.0%
!!! ATTCTACTTCCTATTTTTGG+CGG + chr2_2:57173567-57173586 Msa0259830:intron 30.0%
GGTCATATTCTATTATCTGA+GGG + chr2_2:57173640-57173659 Msa0259830:intron 30.0%
GCTACAAAAATGAAAAACAG+TGG - chr2_2:57173716-57173735 None:intergenic 30.0%
!! TGTTTTTCATTTTTGTAGCG+TGG + chr2_2:57173717-57173736 Msa0259830:intron 30.0%
TTAAAAAGATGTCTTCCTCT+TGG + chr2_2:57173745-57173764 Msa0259830:CDS 30.0%
! TTGATTCGTTGGTAAATTGT+TGG - chr2_2:57174029-57174048 None:intergenic 30.0%
AATTTACCAACGAATCAAGT+TGG + chr2_2:57174031-57174050 Msa0259830:CDS 30.0%
GTCTTTCAACATTAGCTATT+AGG + chr2_2:57174138-57174157 Msa0259830:intron 30.0%
AACATTAGCTATTAGGAGTT+AGG + chr2_2:57174145-57174164 Msa0259830:intron 30.0%
!! CTAGTGCTGATTTGATTAAA+TGG + chr2_2:57174300-57174319 Msa0259830:three_prime_UTR 30.0%
!!! TGCAGTTTTTAGTTCTGATA+AGG + chr2_2:57174371-57174390 Msa0259830:three_prime_UTR 30.0%
TTTCAACATAGACTGAATAG+AGG + chr2_2:57174465-57174484 Msa0259830:three_prime_UTR 30.0%
AATACTCATTTGTGTAGATG+GGG + chr2_2:57174554-57174573 Msa0259830:three_prime_UTR 30.0%
!!! GTTTTGAGTCCTTTTGTTTT+TGG + chr2_2:57174642-57174661 Msa0259830:three_prime_UTR 30.0%
GGAAATAGGAAAAAAGAGTG+CGG + chr2_2:57167938-57167957 Msa0259830:five_prime_UTR 35.0%
AAAAGGGTAGAAATGAAACC+TGG - chr2_2:57167992-57168011 None:intergenic 35.0%
! TAAATCAGACTCTGAAAGGA+TGG - chr2_2:57168026-57168045 None:intergenic 35.0%
GTGATAAATCAGACTCTGAA+AGG - chr2_2:57168030-57168049 None:intergenic 35.0%
! CTCAACTATTTCTTCTTCCA+AGG - chr2_2:57168147-57168166 None:intergenic 35.0%
AGAAATAGTTGAGATCTTCC+AGG + chr2_2:57168154-57168173 Msa0259830:intron 35.0%
GAAATAGTTGAGATCTTCCA+GGG + chr2_2:57168155-57168174 Msa0259830:intron 35.0%
!! TGTTGCCTATTATTTTTCCC+TGG - chr2_2:57168175-57168194 None:intergenic 35.0%
ATTCACACTAGATAGGAAAG+CGG + chr2_2:57168229-57168248 Msa0259830:intron 35.0%
AGATAGGAAAGCGGAAAAAA+AGG + chr2_2:57168238-57168257 Msa0259830:intron 35.0%
TGGTATGCTTTCTAGGTATA+AGG + chr2_2:57168362-57168381 Msa0259830:intron 35.0%
! TGAGAGGATTTCATTGATTG+TGG - chr2_2:57168476-57168495 None:intergenic 35.0%
CAATCAATGAAATCCTCTCA+AGG + chr2_2:57168476-57168495 Msa0259830:five_prime_UTR 35.0%
ATGCATATCTCATCACAAGT+TGG - chr2_2:57168699-57168718 None:intergenic 35.0%
ACTTGTGATGAGATATGCAT+CGG + chr2_2:57168699-57168718 Msa0259830:five_prime_UTR 35.0%
! TACTTGCTTGACGAAGTTTT+TGG - chr2_2:57168793-57168812 None:intergenic 35.0%
CTTCGTCAAGCAAGTAAATT+TGG + chr2_2:57168797-57168816 Msa0259830:five_prime_UTR 35.0%
AATTGAAATTATGGCTCCAG+AGG + chr2_2:57168832-57168851 Msa0259830:five_prime_UTR 35.0%
CCAAAAAATATGACTACCTC+TGG - chr2_2:57168851-57168870 None:intergenic 35.0%
!!! CCAGAGGTAGTCATATTTTT+TGG + chr2_2:57168848-57168867 Msa0259830:five_prime_UTR 35.0%
AATGATCCAATGTAGTAGGT+AGG - chr2_2:57168876-57168895 None:intergenic 35.0%
CCTAAATGATCCAATGTAGT+AGG - chr2_2:57168880-57168899 None:intergenic 35.0%
CCTACTACATTGGATCATTT+AGG + chr2_2:57168877-57168896 Msa0259830:five_prime_UTR 35.0%
CAATTTACCGAAATAGGTCT+AGG + chr2_2:57169094-57169113 Msa0259830:five_prime_UTR 35.0%
AACCACTGTTTCAAGGTTAA+AGG + chr2_2:57169156-57169175 Msa0259830:five_prime_UTR 35.0%
TACCTTTAACCTTGAAACAG+TGG - chr2_2:57169161-57169180 None:intergenic 35.0%
!! ATGTCAGGTTAGTTTCAATC+AGG + chr2_2:57169332-57169351 Msa0259830:intron 35.0%
AGTGCAAAAATCAAGGTTCA+CGG - chr2_2:57169384-57169403 None:intergenic 35.0%
CAGGATAAGTGCAAAAATCA+AGG - chr2_2:57169391-57169410 None:intergenic 35.0%
GAAGGAAGAAGTAGATCAAA+AGG + chr2_2:57169629-57169648 Msa0259830:CDS 35.0%
CTGTCAAATAACCTCTTAAC+TGG - chr2_2:57169772-57169791 None:intergenic 35.0%
ATTTGACAGCAACAATTCCT+TGG + chr2_2:57169783-57169802 Msa0259830:CDS 35.0%
! ATAATTCATTTTCCTCGCTG+AGG + chr2_2:57169929-57169948 Msa0259830:CDS 35.0%
AATCATTTGAGGAATGCAAC+GGG + chr2_2:57169974-57169993 Msa0259830:CDS 35.0%
GGAATCAACAAATAGAAGAG+TGG + chr2_2:57169995-57170014 Msa0259830:CDS 35.0%
CTGCAAAGAGCTAGAAAATA+AGG + chr2_2:57170053-57170072 Msa0259830:CDS 35.0%
AAATAAGGAGACCCAAGTTA+AGG + chr2_2:57170068-57170087 Msa0259830:CDS 35.0%
AGACTCAAGTTCCTTAACTT+GGG - chr2_2:57170082-57170101 None:intergenic 35.0%
CTGATTCAAAGTTCTTCACT+AGG - chr2_2:57170167-57170186 None:intergenic 35.0%
GGAATTTGAAAGAAGAGTGA+AGG + chr2_2:57170236-57170255 Msa0259830:CDS 35.0%
! TAAATTCCTCCTCTTTTGAC+TGG - chr2_2:57170266-57170285 None:intergenic 35.0%
!! AGTGAAAGTGTTTGAAGCAA+AGG + chr2_2:57170293-57170312 Msa0259830:CDS 35.0%
CAATTCAGTATCACCATTGA+TGG + chr2_2:57170861-57170880 Msa0259830:CDS 35.0%
!! AGATCCAGCAAAACTTGTTT+TGG + chr2_2:57170929-57170948 Msa0259830:CDS 35.0%
!! GTTTTTCTAGCAGATAGATG+CGG - chr2_2:57171022-57171041 None:intergenic 35.0%
! GAAAATTCTTTGGAGGTTCT+CGG + chr2_2:57171134-57171153 Msa0259830:CDS 35.0%
AGATAGCTGTAAAGCTGTTT+AGG + chr2_2:57171255-57171274 Msa0259830:CDS 35.0%
GACTTTATGTACAAAACCCA+GGG - chr2_2:57171282-57171301 None:intergenic 35.0%
AGACTTTATGTACAAAACCC+AGG - chr2_2:57171283-57171302 None:intergenic 35.0%
!! GGTTTTGTACATAAAGTCTC+TGG + chr2_2:57171284-57171303 Msa0259830:CDS 35.0%
AACAAGAGTTGTCCTATTTC+AGG - chr2_2:57171615-57171634 None:intergenic 35.0%
ACTTCTTGGGTGTTAATGTT+TGG + chr2_2:57171811-57171830 Msa0259830:intron 35.0%
AGTAGTCAAATCCTATTAGC+AGG - chr2_2:57172104-57172123 None:intergenic 35.0%
TAGGATTTGACTACTAATGC+TGG + chr2_2:57172109-57172128 Msa0259830:intron 35.0%
!! TTTGAGATGGATTGTAAGAG+TGG - chr2_2:57172296-57172315 None:intergenic 35.0%
!! GCTAATATGGGTATTGAGAT+TGG + chr2_2:57172325-57172344 Msa0259830:intron 35.0%
TCAACTGATGTTGTAATCGA+TGG - chr2_2:57172392-57172411 None:intergenic 35.0%
!!! GCAGTTTTAGCTTTTCAGTT+TGG + chr2_2:57172529-57172548 Msa0259830:intron 35.0%
! ACTCTGAAAGGAAGGTATAT+AGG - chr2_2:57172614-57172633 None:intergenic 35.0%
AAATTGAACTCTCCAATCAC+AGG - chr2_2:57172637-57172656 None:intergenic 35.0%
AATGAAATGTTGCCAGTCTA+TGG - chr2_2:57172832-57172851 None:intergenic 35.0%
TAGACTGGCAACATTTCATT+AGG + chr2_2:57172832-57172851 Msa0259830:intron 35.0%
TCTTATCTTGCATTTGCAAG+AGG + chr2_2:57173001-57173020 Msa0259830:intron 35.0%
GACTTCGTAGTCATTTCATA+TGG + chr2_2:57173046-57173065 Msa0259830:intron 35.0%
GTATCATATTCGAAGTCTGA+AGG - chr2_2:57173102-57173121 None:intergenic 35.0%
ATAAACACCAGTTTCATGTG+TGG + chr2_2:57173152-57173171 Msa0259830:intron 35.0%
TAAACACCAGTTTCATGTGT+GGG + chr2_2:57173153-57173172 Msa0259830:intron 35.0%
TCCATAATCCACATTCTACT+GGG - chr2_2:57173189-57173208 None:intergenic 35.0%
TTTAGACCTTTAGGTCTTGA+AGG + chr2_2:57173227-57173246 Msa0259830:intron 35.0%
GCACATGGAAAACATAAACT+TGG - chr2_2:57173264-57173283 None:intergenic 35.0%
ATGCATACAAAGATAGCACA+TGG - chr2_2:57173279-57173298 None:intergenic 35.0%
!!! ATGAGTTTTGAACAAGAACC+TGG + chr2_2:57173328-57173347 Msa0259830:intron 35.0%
!!! TGAGTTTTGAACAAGAACCT+GGG + chr2_2:57173329-57173348 Msa0259830:intron 35.0%
!!! GTTTTTTGCATGCTGTTTCA+GGG + chr2_2:57173351-57173370 Msa0259830:intron 35.0%
GCCAAGAAAATTTCTTAAGG+AGG + chr2_2:57173485-57173504 Msa0259830:intron 35.0%
GCCAAAAATAGGAAGTAGAA+TGG - chr2_2:57173568-57173587 None:intergenic 35.0%
!!! TTCTACTTCCTATTTTTGGC+GGG + chr2_2:57173568-57173587 Msa0259830:intron 35.0%
CGGTCATATTCTATTATCTG+AGG + chr2_2:57173639-57173658 Msa0259830:intron 35.0%
GTTATCTGTATTAACGCACA+TGG + chr2_2:57173893-57173912 Msa0259830:intron 35.0%
TAGTAAGTTGCTTCAAACGA+TGG + chr2_2:57173976-57173995 Msa0259830:CDS 35.0%
! AAGGCTTTTAAATGCTAACC+TGG - chr2_2:57174071-57174090 None:intergenic 35.0%
AGGTTAGCATTTAAAAGCCT+TGG + chr2_2:57174070-57174089 Msa0259830:intron 35.0%
GATAGGGATAATGATCATGT+AGG - chr2_2:57174226-57174245 None:intergenic 35.0%
GTAGCAACTTCACTAGAATT+TGG - chr2_2:57174332-57174351 None:intergenic 35.0%
ACTCTAAGCTGCTATTCAAT+TGG + chr2_2:57174514-57174533 Msa0259830:three_prime_UTR 35.0%
AGCTGCTATTCAATTGGTTA+AGG + chr2_2:57174520-57174539 Msa0259830:three_prime_UTR 35.0%
GTAGAAATGAAACCTGGAGA+TGG - chr2_2:57167986-57168005 None:intergenic 40.0%
TTGACTGAATTCAAAGGCCT+TGG + chr2_2:57168127-57168146 Msa0259830:intron 40.0%
CATCCTGTTGTAGCCAAATT+TGG + chr2_2:57168196-57168215 Msa0259830:intron 40.0%
TCTCCAAATTTGGCTACAAC+AGG - chr2_2:57168202-57168221 None:intergenic 40.0%
AGGAAAGCGGAAAAAAAGGA+AGG + chr2_2:57168242-57168261 Msa0259830:intron 40.0%
! CTGATTTGCAGCAATCACAT+AGG + chr2_2:57168648-57168667 Msa0259830:five_prime_UTR 40.0%
CTTGTGATGAGATATGCATC+GGG + chr2_2:57168700-57168719 Msa0259830:five_prime_UTR 40.0%
ATCAGCCTATTGCTGAAGTA+AGG - chr2_2:57168728-57168747 None:intergenic 40.0%
!! CTTGACGAAGTTTTTGGAAG+GGG - chr2_2:57168787-57168806 None:intergenic 40.0%
!! GCTTGACGAAGTTTTTGGAA+GGG - chr2_2:57168788-57168807 None:intergenic 40.0%
!! TGCTTGACGAAGTTTTTGGA+AGG - chr2_2:57168789-57168808 None:intergenic 40.0%
!!! CTTTGCTTCGTTTTTTCCCT+GGG - chr2_2:57168958-57168977 None:intergenic 40.0%
!!! TCTTTGCTTCGTTTTTTCCC+TGG - chr2_2:57168959-57168978 None:intergenic 40.0%
CTCTGATTCAGTTTCGAAGA+GGG - chr2_2:57169192-57169211 None:intergenic 40.0%
CTGAAACTTGAGACTGTGTT+TGG - chr2_2:57169260-57169279 None:intergenic 40.0%
ACAGTGTTCCAGCATATAAC+AGG + chr2_2:57169290-57169309 Msa0259830:five_prime_UTR 40.0%
CAGTGTTCCAGCATATAACA+GGG + chr2_2:57169291-57169310 Msa0259830:five_prime_UTR 40.0%
TTGGATTTAACAGCACGAAC+TGG + chr2_2:57169585-57169604 Msa0259830:CDS 40.0%
!! CAAGGAATTGTTGCTTTCCA+AGG - chr2_2:57169803-57169822 None:intergenic 40.0%
CTTGGAAAGCAACAATTCCT+TGG + chr2_2:57169801-57169820 Msa0259830:CDS 40.0%
!! GAATTATCAGCTGATTTGCC+TGG - chr2_2:57169916-57169935 None:intergenic 40.0%
AAATAGAAGAGTGGCGATTG+TGG + chr2_2:57170004-57170023 Msa0259830:CDS 40.0%
CAGACTCAAGTTCCTTAACT+TGG - chr2_2:57170083-57170102 None:intergenic 40.0%
! AGTGTTTGAAGCAAAGGAAG+AGG + chr2_2:57170299-57170318 Msa0259830:CDS 40.0%
GCAATTTGAAAACCAAGCTG+AGG + chr2_2:57170341-57170360 Msa0259830:CDS 40.0%
!!! ACTGGACTAGCTTTTCAACT+TGG - chr2_2:57170585-57170604 None:intergenic 40.0%
TTCCTCACTTGTTCCATCAA+TGG - chr2_2:57170877-57170896 None:intergenic 40.0%
GATGGAACAAGTGAGGAATT+TGG + chr2_2:57170879-57170898 Msa0259830:CDS 40.0%
! TAGCTTTTCTCTCCAAAGTG+AGG + chr2_2:57172495-57172514 Msa0259830:intron 40.0%
TTCGTACTAGTGATTGGAGT+TGG + chr2_2:57172655-57172674 Msa0259830:CDS 40.0%
ACAATACTTGTGCGTGATTC+GGG - chr2_2:57172696-57172715 None:intergenic 40.0%
GACAATACTTGTGCGTGATT+CGG - chr2_2:57172697-57172716 None:intergenic 40.0%
TGTATGATAAGGCTCATGCA+CGG + chr2_2:57172891-57172910 Msa0259830:intron 40.0%
ATGAAATGACTACGAAGTCG+AGG - chr2_2:57173045-57173064 None:intergenic 40.0%
GTGAGTCTTGACACAACAAA+TGG - chr2_2:57173080-57173099 None:intergenic 40.0%
! TCCCAGTAGAATGTGGATTA+TGG + chr2_2:57173185-57173204 Msa0259830:intron 40.0%
GTCCATAATCCACATTCTAC+TGG - chr2_2:57173190-57173209 None:intergenic 40.0%
GTGCTATCTTTGTATGCATG+AGG + chr2_2:57173280-57173299 Msa0259830:intron 40.0%
AAACAGCATGCAAAAAACCC+AGG - chr2_2:57173349-57173368 None:intergenic 40.0%
!!! GGTTTTTTGCATGCTGTTTC+AGG + chr2_2:57173350-57173369 Msa0259830:intron 40.0%
!!! TCTACTTCCTATTTTTGGCG+GGG + chr2_2:57173569-57173588 Msa0259830:intron 40.0%
TCATTATCCCCGCCAAAAAT+AGG - chr2_2:57173579-57173598 None:intergenic 40.0%
AAGAACTCGCTAAAGTCATC+TGG - chr2_2:57173610-57173629 None:intergenic 40.0%
AAGAGGGATTGCATCATCTT+TGG + chr2_2:57173776-57173795 Msa0259830:CDS 40.0%
TTGGTAAATTGTTGGCCACA+GGG - chr2_2:57174021-57174040 None:intergenic 40.0%
TAAATGCTAACCTGGATCAG+AGG - chr2_2:57174063-57174082 None:intergenic 40.0%
AGCATTTAAAAGCCTTGGCA+TGG + chr2_2:57174075-57174094 Msa0259830:intron 40.0%
! GGAATACTTTTACCATGCCA+AGG - chr2_2:57174090-57174109 None:intergenic 40.0%
AACTGAGAGTCAGATACTCT+CGG - chr2_2:57174111-57174130 None:intergenic 40.0%
GCAACTTCACTAGAATTTGG+AGG - chr2_2:57174329-57174348 None:intergenic 40.0%
! AGTTTTGCAAGCAGAACTGT+GGG + chr2_2:57174429-57174448 Msa0259830:three_prime_UTR 40.0%
GGACGTGTTAGAAACTCATA+GGG - chr2_2:57174726-57174745 None:intergenic 40.0%
AGGACGTGTTAGAAACTCAT+AGG - chr2_2:57174727-57174746 None:intergenic 40.0%
AGTTTCTAACACGTCCTATC+TGG + chr2_2:57174730-57174749 Msa0259830:three_prime_UTR 40.0%
! AGGAAAAAAGAGTGCGGTGA+TGG + chr2_2:57167944-57167963 Msa0259830:five_prime_UTR 45.0%
!! AGATCGCGCTGATTGAACAA+TGG + chr2_2:57168529-57168548 Msa0259830:five_prime_UTR 45.0%
TGGCTCATAAACTGTTGCTG+CGG - chr2_2:57168569-57168588 None:intergenic 45.0%
GCAACAGTTTATGAGCCAAC+AGG + chr2_2:57168571-57168590 Msa0259830:five_prime_UTR 45.0%
! TGTTGGTTGCATTTGCCTGT+TGG - chr2_2:57168589-57168608 None:intergenic 45.0%
ACAGGCAAATGCAACCAACA+TGG + chr2_2:57168589-57168608 Msa0259830:five_prime_UTR 45.0%
CATCTGAGTGTGTTCCATGT+TGG - chr2_2:57168606-57168625 None:intergenic 45.0%
ATGGAACACACTCAGATGCT+TGG + chr2_2:57168608-57168627 Msa0259830:five_prime_UTR 45.0%
TGGAACACACTCAGATGCTT+GGG + chr2_2:57168609-57168628 Msa0259830:five_prime_UTR 45.0%
GGGTTCCTTACTTCAGCAAT+AGG + chr2_2:57168720-57168739 Msa0259830:five_prime_UTR 45.0%
TTGGGTCCTACCTACTACAT+TGG + chr2_2:57168867-57168886 Msa0259830:five_prime_UTR 45.0%
! TACCGAAATAGGTCTAGGGT+TGG + chr2_2:57169099-57169118 Msa0259830:five_prime_UTR 45.0%
GTCCAACCCTAGACCTATTT+CGG - chr2_2:57169104-57169123 None:intergenic 45.0%
! AAATAGGTCTAGGGTTGGAC+AGG + chr2_2:57169104-57169123 Msa0259830:five_prime_UTR 45.0%
CCTCTGATTCAGTTTCGAAG+AGG - chr2_2:57169193-57169212 None:intergenic 45.0%
CCTCTTCGAAACTGAATCAG+AGG + chr2_2:57169190-57169209 Msa0259830:five_prime_UTR 45.0%
CTTCGAAACTGAATCAGAGG+CGG + chr2_2:57169193-57169212 Msa0259830:five_prime_UTR 45.0%
TTCGAAACTGAATCAGAGGC+GGG + chr2_2:57169194-57169213 Msa0259830:five_prime_UTR 45.0%
GAAGGAGTTCCAGTCAAAAG+AGG + chr2_2:57170254-57170273 Msa0259830:CDS 45.0%
GCAAAGGAAGAGGAATTCGA+AGG + chr2_2:57170309-57170328 Msa0259830:CDS 45.0%
!! CTTTGAGATTGTCCTCAGCT+TGG - chr2_2:57170356-57170375 None:intergenic 45.0%
CACCATTGATGGAACAAGTG+AGG + chr2_2:57170872-57170891 Msa0259830:CDS 45.0%
TTCTTAGGCAGTGGAATCGT+GGG - chr2_2:57170969-57170988 None:intergenic 45.0%
ACGATTCCACTGCCTAAGAA+GGG + chr2_2:57170969-57170988 Msa0259830:CDS 45.0%
! ACAGCTTTGTCTCCCTTCTT+AGG - chr2_2:57170984-57171003 None:intergenic 45.0%
! TGTAAAGCTGTTTAGGACCC+TGG + chr2_2:57171262-57171281 Msa0259830:CDS 45.0%
! GTAAAGCTGTTTAGGACCCT+GGG + chr2_2:57171263-57171282 Msa0259830:CDS 45.0%
! ATCACAGGACTCTGAAAGGA+AGG - chr2_2:57172622-57172641 None:intergenic 45.0%
TCCTTTCAGAGTCCTGTGAT+TGG + chr2_2:57172622-57172641 Msa0259830:intron 45.0%
TCCAATCACAGGACTCTGAA+AGG - chr2_2:57172626-57172645 None:intergenic 45.0%
ACTAGTGATTGGAGTTGGAG+AGG + chr2_2:57172660-57172679 Msa0259830:CDS 45.0%
GTACTATAAAGCTCCCCTCA+TGG + chr2_2:57172940-57172959 Msa0259830:intron 45.0%
TAGATTCACAACAGAGCTCC+CGG - chr2_2:57172972-57172991 None:intergenic 45.0%
CGAAGTCGAGGTTTGATTAG+TGG - chr2_2:57173033-57173052 None:intergenic 45.0%
ACAATGCCCACACATGAAAC+TGG - chr2_2:57173162-57173181 None:intergenic 45.0%
TTGTGTGTCCCAGTAGAATG+TGG + chr2_2:57173178-57173197 Msa0259830:intron 45.0%
AGACCTTTAGGTCTTGAAGG+AGG + chr2_2:57173230-57173249 Msa0259830:intron 45.0%
TCTCCTCCTTCAAGACCTAA+AGG - chr2_2:57173236-57173255 None:intergenic 45.0%
TTGTATGCATGAGGCGTGTT+TGG + chr2_2:57173289-57173308 Msa0259830:intron 45.0%
! CTGTTTCAGGGTTGTGGTTT+TGG + chr2_2:57173363-57173382 Msa0259830:intron 45.0%
AGTAGAATGGACGTCAGACA+TGG - chr2_2:57173555-57173574 None:intergenic 45.0%
AGCGAGTTCTTCTTGCATGT+CGG + chr2_2:57173619-57173638 Msa0259830:intron 45.0%
AGATGTCTTCCTCTTGGTTG+TGG + chr2_2:57173751-57173770 Msa0259830:CDS 45.0%
! ATCTTTGGAAGATTGCCCTG+CGG + chr2_2:57173791-57173810 Msa0259830:CDS 45.0%
CATCTTCTCTTCAAACCGCA+GGG - chr2_2:57173809-57173828 None:intergenic 45.0%
ACATCTTCTCTTCAAACCGC+AGG - chr2_2:57173810-57173829 None:intergenic 45.0%
GTTTACAGCTGCAACAAGTC+AGG + chr2_2:57173828-57173847 Msa0259830:CDS 45.0%
TTCAAACGATGGCTAGACAC+CGG + chr2_2:57173987-57174006 Msa0259830:CDS 45.0%
! GTTGGTAAATTGTTGGCCAC+AGG - chr2_2:57174022-57174041 None:intergenic 45.0%
! CAGTTTTGCAAGCAGAACTG+TGG + chr2_2:57174428-57174447 Msa0259830:three_prime_UTR 45.0%
! GTTTTGCAAGCAGAACTGTG+GGG + chr2_2:57174430-57174449 Msa0259830:three_prime_UTR 45.0%
! TTTTGCAAGCAGAACTGTGG+GGG + chr2_2:57174431-57174450 Msa0259830:three_prime_UTR 45.0%
!!! ATTTATTTAAGTTTTTTAAT+TGG + chr2_2:57174602-57174621 Msa0259830:three_prime_UTR 5.0%
AACCTGGAGATGGTAGACAG+TGG - chr2_2:57167976-57167995 None:intergenic 50.0%
CCATGTGGAAAAGCCTTGAG+AGG - chr2_2:57168492-57168511 None:intergenic 50.0%
! CCTCTCAAGGCTTTTCCACA+TGG + chr2_2:57168489-57168508 Msa0259830:five_prime_UTR 50.0%
TCGATGTTGAGTCAGTCCCA+GGG + chr2_2:57168939-57168958 Msa0259830:five_prime_UTR 50.0%
GTCGTGGAACCACTGTTTCA+AGG + chr2_2:57169149-57169168 Msa0259830:five_prime_UTR 50.0%
TTATCGATGGCGACGATGTC+AGG + chr2_2:57169317-57169336 Msa0259830:exon 50.0%
CTACTGCACTGCCAGTTAAG+AGG + chr2_2:57169758-57169777 Msa0259830:CDS 50.0%
TGCAAGTTCTTTCCTCAGCG+AGG - chr2_2:57169944-57169963 None:intergenic 50.0%
ACATTTCGCGAGCCGACAAA+AGG + chr2_2:57170194-57170213 Msa0259830:CDS 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG + chr2_2:57170257-57170276 Msa0259830:CDS 50.0%
TCTTAGGCAGTGGAATCGTG+GGG - chr2_2:57170968-57170987 None:intergenic 50.0%
CTTCTTAGGCAGTGGAATCG+TGG - chr2_2:57170970-57170989 None:intergenic 50.0%
CACGATTCCACTGCCTAAGA+AGG + chr2_2:57170968-57170987 Msa0259830:CDS 50.0%
TTGTCTCCCTTCTTAGGCAG+TGG - chr2_2:57170978-57170997 None:intergenic 50.0%
ATGCATGAGGCGTGTTTGGT+TGG + chr2_2:57173293-57173312 Msa0259830:intron 50.0%
!! TGCATGCTGTTTCAGGGTTG+TGG + chr2_2:57173357-57173376 Msa0259830:intron 50.0%
TCCTCTTGGTTGTGGTGAAG+AGG + chr2_2:57173759-57173778 Msa0259830:CDS 50.0%
CCTCTTGGTTGTGGTGAAGA+GGG + chr2_2:57173760-57173779 Msa0259830:CDS 50.0%
TCAAACGATGGCTAGACACC+GGG + chr2_2:57173988-57174007 Msa0259830:CDS 50.0%
! CTAGGGCCAACTTGATTCGT+TGG - chr2_2:57174040-57174059 None:intergenic 50.0%
CTAACCTGGATCAGAGGCTA+GGG - chr2_2:57174057-57174076 None:intergenic 50.0%
GAACTGTGGGGGATTTGACA+TGG + chr2_2:57174442-57174461 Msa0259830:three_prime_UTR 50.0%
GGGTAGGGCCCAAAAACAAA+AGG - chr2_2:57174654-57174673 None:intergenic 50.0%
CTGGAGATGGTAGACAGTGG+TGG - chr2_2:57167973-57167992 None:intergenic 55.0%
CACCACTGTCTACCATCTCC+AGG + chr2_2:57167971-57167990 Msa0259830:five_prime_UTR 55.0%
GTCGATGTTGAGTCAGTCCC+AGG + chr2_2:57168938-57168957 Msa0259830:five_prime_UTR 55.0%
AAACTGAATCAGAGGCGGGC+AGG + chr2_2:57169198-57169217 Msa0259830:five_prime_UTR 55.0%
AGGCGGGCAGGTCAAAATTG+AGG + chr2_2:57169210-57169229 Msa0259830:five_prime_UTR 55.0%
CACGAACTGGACAGCCAAGT+GGG + chr2_2:57169598-57169617 Msa0259830:CDS 55.0%
ACGAACTGGACAGCCAAGTG+GGG + chr2_2:57169599-57169618 Msa0259830:CDS 55.0%
TCCTTCCAATCACCCCCACT+TGG - chr2_2:57169615-57169634 None:intergenic 55.0%
CCCTCTTCACCACAACCAAG+AGG - chr2_2:57173763-57173782 None:intergenic 55.0%
AATTGTTGGCCACAGGGTCC+TGG - chr2_2:57174015-57174034 None:intergenic 55.0%
GCTAACCTGGATCAGAGGCT+AGG - chr2_2:57174058-57174077 None:intergenic 55.0%
GCACGAACTGGACAGCCAAG+TGG + chr2_2:57169597-57169616 Msa0259830:CDS 60.0%
CGAACTGGACAGCCAAGTGG+GGG + chr2_2:57169600-57169619 Msa0259830:CDS 60.0%
GACAGCCAAGTGGGGGTGAT+TGG + chr2_2:57169607-57169626 Msa0259830:CDS 60.0%
GCCAAGTGGGGGTGATTGGA+AGG + chr2_2:57169611-57169630 Msa0259830:CDS 60.0%
GCTCCCCTCATGGCAAGTAC+CGG + chr2_2:57172950-57172969 Msa0259830:intron 60.0%
CTCCCCTCATGGCAAGTACC+GGG + chr2_2:57172951-57172970 Msa0259830:intron 60.0%
CTCCCGGTACTTGCCATGAG+GGG - chr2_2:57172956-57172975 None:intergenic 60.0%
GCTCCCGGTACTTGCCATGA+GGG - chr2_2:57172957-57172976 None:intergenic 60.0%
AGCTCCCGGTACTTGCCATG+AGG - chr2_2:57172958-57172977 None:intergenic 60.0%
TTGGCCCTAGCCTCTGATCC+AGG + chr2_2:57174050-57174069 Msa0259830:exon 60.0%
GATGGCTAGACACCGGGTCC+AGG + chr2_2:57173994-57174013 Msa0259830:CDS 65.0%
ACACCGGGTCCAGGACCCTG+TGG + chr2_2:57174003-57174022 Msa0259830:CDS 70.0%
TGGCCACAGGGTCCTGGACC+CGG - chr2_2:57174009-57174028 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 57167928 57174753 57167928 ID=Msa0259830;Name=Msa0259830
chr2_2 mRNA 57167928 57174753 57167928 ID=Msa0259830-mRNA-1;Parent=Msa0259830;Name=Msa0259830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=930|0.77|0.9|0.9|0.77|0.8|10|478|570
chr2_2 exon 57167928 57167992 57167928 ID=Msa0259830-mRNA-1:exon:17293;Parent=Msa0259830-mRNA-1
chr2_2 exon 57168458 57169338 57168458 ID=Msa0259830-mRNA-1:exon:17294;Parent=Msa0259830-mRNA-1
chr2_2 exon 57169580 57169650 57169580 ID=Msa0259830-mRNA-1:exon:17295;Parent=Msa0259830-mRNA-1
chr2_2 exon 57169748 57170504 57169748 ID=Msa0259830-mRNA-1:exon:17296;Parent=Msa0259830-mRNA-1
chr2_2 exon 57170841 57171305 57170841 ID=Msa0259830-mRNA-1:exon:17297;Parent=Msa0259830-mRNA-1
chr2_2 exon 57172631 57172724 57172631 ID=Msa0259830-mRNA-1:exon:17298;Parent=Msa0259830-mRNA-1
chr2_2 exon 57173372 57173452 57173372 ID=Msa0259830-mRNA-1:exon:17299;Parent=Msa0259830-mRNA-1
chr2_2 exon 57173735 57173849 57173735 ID=Msa0259830-mRNA-1:exon:17300;Parent=Msa0259830-mRNA-1
chr2_2 exon 57173953 57174071 57173953 ID=Msa0259830-mRNA-1:exon:17301;Parent=Msa0259830-mRNA-1
chr2_2 exon 57174281 57174753 57174281 ID=Msa0259830-mRNA-1:exon:17302;Parent=Msa0259830-mRNA-1
chr2_2 five_prime_UTR 57167928 57167992 57167928 ID=Msa0259830-mRNA-1:five_prime_utr;Parent=Msa0259830-mRNA-1
chr2_2 five_prime_UTR 57168458 57169322 57168458 ID=Msa0259830-mRNA-1:five_prime_utr;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57169323 57169338 57169323 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57169580 57169650 57169580 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57169748 57170504 57169748 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57170841 57171305 57170841 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57172631 57172724 57172631 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57173372 57173452 57173372 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57173735 57173849 57173735 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 CDS 57173953 57174066 57173953 ID=Msa0259830-mRNA-1:cds;Parent=Msa0259830-mRNA-1
chr2_2 three_prime_UTR 57174067 57174071 57174067 ID=Msa0259830-mRNA-1:three_prime_utr;Parent=Msa0259830-mRNA-1
chr2_2 three_prime_UTR 57174281 57174753 57174281 ID=Msa0259830-mRNA-1:three_prime_utr;Parent=Msa0259830-mRNA-1
Gene Sequence

>Msa0259830

ATGGCGACGATGTCAGATTCTTTGGATTTAACAGCACGAACTGGACAGCCAAGTGGGGGTGATTGGAAGGAAGAAGTAGATCAAAAGAAGATGGATACTACTGCACTGCCAGTTAAGAGGTTATTTGACAGCAACAATTCCTTGGAAAGCAACAATTCCTTGGAATTTTCTGTTAAGAAATCAAAGGTGTCACTATACGATGATCGTGACAAAGATGAAGACGATATTCCTTCGTTGAATATGAATAAAAGGCCAGGCAAATCAGCTGATAATTCATTTTCCTCGCTGAGGAAAGAACTTGCATTGTTGAAAAAATCATTTGAGGAATGCAACGGGAATCAACAAATAGAAGAGTGGCGATTGTGGTCCATAAAGAGAAATATTGAGAAGTGCTGCAAAGAGCTAGAAAATAAGGAGACCCAAGTTAAGGAACTTGAGTCTGAAAAGAATATACTTGATGGTCGAGTAAATGAGCTTGAATCAAAAAAGGGTGAATTTGATGGCCTAGTGAAGAACTTTGAATCAGAAAAGACACATTTCGCGAGCCGACAAAAGGAATTTGAATCAAAAGAAAAGGAATTTGAAAGAAGAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAATTTAAAGGTCGAGTGAAAGTGTTTGAAGCAAAGGAAGAGGAATTCGAAGGAAAAATGCAGCAATTTGAAAACCAAGCTGAGGACAATCTCAAAGCACTCCAGTTAAAAGAGAATCAGATTGAAGTACAAATCAAGGATCCTGAGTCAAAGCTGAATAATTTTGGTGGACAACTAAAGGAGCTTGAGTTGACAGAGAAACAATACGATGAAGAAAAAGAATTTGATACATCTAACATGGATGATCAATTCAGTATCACCATTGATGGAACAAGTGAGGAATTTGGCATTCTAGATAATTTGCGAAAATCATCAGATCCAGCAAAACTTGTTTTGGATATAATACTAAACCCCACGATTCCACTGCCTAAGAAGGGAGACAAAGCTGTGATTATTGATGAAAGCCGCATCTATCTGCTAGAAAAACTGATGATAATCTCACCAGATATTAAATCTTGTGTAAGAGATGAAGCTTTGAAGCTAGCACGTGAATTGAAAGCTAACATGAAAGAAAATACTGAAAATTCTTTGGAGGTTCTCGGATTTCTGATGATTTTGTCGATTTATGGATTGCTTACTTACTTTGATGAAGATGAAGTCTTCAAGCTTTTTGCTTCTGTTGCGTCTGTTGCTGAATACAAGATAGCTGTAAAGCTGTTTAGGACCCTGGGTTTTGTACATAAAGTCTCTGAGTCCTGTGATTGGAGAGTTCAATTTCGTACTAGTGATTGGAGTTGGAGAGGTCAATTGTCACCCGAATCACGCACAAGTATTGTCTCCAAAATGGTTGTGGTTTTGGCTCTTATGTCACATTCTTCTCAATTTCTTATGTTTTATGGAAAATGGATGTTTATTGGAAAACTAAACGTGGAGATATTAAAAAGATGTCTTCCTCTTGGTTGTGGTGAAGAGGGATTGCATCATCTTTGGAAGATTGCCCTGCGGTTTGAAGAGAAGATGTTTACAGCTGCAACAAGTCAGTATGATTACAACTGGAAAATAGCTAGTAAGTTGCTTCAAACGATGGCTAGACACCGGGTCCAGGACCCTGTGGCCAACAATTTACCAACGAATCAAGTTGGCCCTAGCCTCTGA
Protein sequence

>Msa0259830

MATMSDSLDLTARTGQPSGGDWKEEVDQKKMDTTALPVKRLFDSNNSLESNNSLEFSVKKSKVSLYDDRDKDEDDIPSLNMNKRPGKSADNSFSSLRKELALLKKSFEECNGNQQIEEWRLWSIKRNIEKCCKELENKETQVKELESEKNILDGRVNELESKKGEFDGLVKNFESEKTHFASRQKEFESKEKEFERRVKEFQSKEEEFKGRVKVFEAKEEEFEGKMQQFENQAEDNLKALQLKENQIEVQIKDPESKLNNFGGQLKELELTEKQYDEEKEFDTSNMDDQFSITIDGTSEEFGILDNLRKSSDPAKLVLDIILNPTIPLPKKGDKAVIIDESRIYLLEKLMIISPDIKSCVRDEALKLARELKANMKENTENSLEVLGFLMILSIYGLLTYFDEDEVFKLFASVASVAEYKIAVKLFRTLGFVHKVSESCDWRVQFRTSDWSWRGQLSPESRTSIVSKMVVVLALMSHSSQFLMFYGKWMFIGKLNVEILKRCLPLGCGEEGLHHLWKIALRFEEKMFTAATSQYDYNWKIASKLLQTMARHRVQDPVANNLPTNQVGPSL*