AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0072710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072710 MtrunA17_Chr1g0179681 97.479 238 4 2 1 237 21 257 1.99e-170 469
Msa0072710 MtrunA17_Chr3g0144211 39.888 178 79 4 70 223 52 225 7.10e-29 108
Msa0072710 MtrunA17_Chr5g0396231 37.903 124 64 4 105 224 386 500 3.39e-17 80.1
Msa0072710 MtrunA17_Chr4g0052911 40.000 125 54 5 111 222 122 238 2.22e-15 72.8
Msa0072710 MtrunA17_Chr4g0014351 35.484 124 66 5 105 223 754 868 9.07e-15 73.2
Msa0072710 MtrunA17_Chr8g0377771 39.474 114 58 5 112 222 37 142 3.11e-14 71.6
Msa0072710 MtrunA17_Chr8g0392891 25.346 217 129 6 36 227 47 255 1.07e-13 68.6
Msa0072710 MtrunA17_Chr1g0179231 37.607 117 64 4 101 211 65 178 1.36e-13 67.8
Msa0072710 MtrunA17_Chr8g0339141 41.053 95 46 4 130 222 58 144 3.12e-13 68.6
Msa0072710 MtrunA17_Chr7g0234801 37.895 95 49 4 130 222 52 138 1.32e-12 66.6
Msa0072710 MtrunA17_Chr8g0382711 35.075 134 66 5 103 223 81 206 1.63e-11 61.6
Msa0072710 MtrunA17_Chr4g0033841 37.815 119 58 5 109 220 109 218 6.27e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0072710 AT3G10060.1 67.811 233 71 2 5 237 2 230 1.81e-107 309
Msa0072710 AT1G20810.1 32.159 227 121 5 29 227 8 229 4.12e-27 104
Msa0072710 AT1G20810.2 29.075 227 125 6 29 228 8 225 4.74e-20 85.9
Msa0072710 AT5G05420.1 38.017 121 54 3 112 224 36 143 4.56e-17 75.9
Msa0072710 AT4G25340.1 35.172 145 80 5 85 224 342 477 1.80e-16 78.2
Msa0072710 AT3G12340.3 39.344 122 60 5 108 224 266 378 1.85e-15 75.1
Msa0072710 AT3G12340.2 39.344 122 60 5 108 224 266 378 1.85e-15 75.1
Msa0072710 AT3G12340.1 39.344 122 60 5 108 224 387 499 2.07e-15 75.5
Msa0072710 AT5G45680.1 38.235 136 63 5 100 222 79 206 2.74e-15 72.4
Msa0072710 AT5G48570.1 41.053 95 46 4 130 222 65 151 2.75e-14 72.0
Msa0072710 AT3G25230.1 38.462 117 61 5 108 221 34 142 9.25e-14 70.5
Msa0072710 AT3G25230.2 38.462 117 61 5 108 221 34 142 9.68e-14 70.5
Msa0072710 AT4G19830.1 32.743 113 67 4 105 211 78 187 6.04e-13 66.2
Msa0072710 AT1G18170.1 28.846 156 103 3 80 227 91 246 3.62e-12 64.7

Find 150 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCACTTTCAGGAATTT+TGG 0.132496 1_2:-45762428 None:intergenic
TTCTTGACCCTCTGCTTTAA+TGG 0.192895 1_2:+45766849 Msa0072710:three_prime_UTR
TCTGGTAGGGCTGCTCTTCT+AGG 0.222073 1_2:-45764683 None:intergenic
GCGAGAGGAAATGTCTTAAA+AGG 0.252599 1_2:+45763397 Msa0072710:CDS
CCCTCTGCTTTAATGGGTTC+GGG 0.271684 1_2:+45766856 Msa0072710:three_prime_UTR
ACCCTCTGCTTTAATGGGTT+CGG 0.272032 1_2:+45766855 Msa0072710:three_prime_UTR
TTCACCTCTATTGTTGCATT+TGG 0.284032 1_2:-45763893 None:intergenic
GTTGAAATACTTTGGTTTCC+TGG 0.284593 1_2:+45765597 Msa0072710:three_prime_UTR
CCGCTACCGCAGATAATTTC+TGG 0.295757 1_2:-45765179 None:intergenic
TTGCATTTGGAGGAATTTCT+TGG 0.301411 1_2:-45763880 None:intergenic
TCTTGACCCTCTGCTTTAAT+GGG 0.310995 1_2:+45766850 Msa0072710:three_prime_UTR
GGAAGAACTATTGTTACTTC+TGG 0.314777 1_2:-45765047 None:intergenic
AGATTCACTATGTTGCTAAA+TGG 0.324207 1_2:+45763070 Msa0072710:intron
GTAGCTTTCATCAAGCTTGC+AGG 0.327310 1_2:+45765128 Msa0072710:three_prime_UTR
TGTGTCTTGTCTACAAGGTC+TGG 0.329849 1_2:+45765469 Msa0072710:three_prime_UTR
TTAGCCTTCAACAATCTTTA+CGG 0.335766 1_2:-45764609 None:intergenic
AATAGCTCCCATAACCTTCA+TGG 0.340612 1_2:+45766531 Msa0072710:three_prime_UTR
CTGGCACTCTGCTCACTTTG+TGG 0.344207 1_2:-45765160 None:intergenic
AGGAAATGTCTTAAAAGGTT+TGG 0.350382 1_2:+45763402 Msa0072710:CDS
GAAGTTACTTGTGAAGAGAT+TGG 0.350766 1_2:-45761550 None:intergenic
GCCATCAAACAAAGTCCATT+TGG 0.355516 1_2:+45764499 Msa0072710:CDS
CCCAAATGGACTTTGTTTGA+TGG 0.357206 1_2:-45764500 None:intergenic
TCATCACCATGAAACAGTTC+TGG 0.358787 1_2:+45766790 Msa0072710:three_prime_UTR
TTATACCCTTGTACAACCTT+TGG 0.359525 1_2:+45765508 Msa0072710:three_prime_UTR
AAGAGAGAGTTCCATGATAT+TGG 0.359957 1_2:-45761478 None:intergenic
AGAGCAGCAGAGACGAATTC+AGG 0.361317 1_2:-45766605 Msa0072720:CDS
TGTATTCAATATTCCAATAC+AGG 0.366037 1_2:+45764800 Msa0072710:three_prime_UTR
TATTTCAACCGTGTTCATAC+TGG 0.366794 1_2:-45765583 Msa0072720:CDS
CTCTGGTGCAGAAGTAAATC+TGG 0.379600 1_2:-45766485 Msa0072720:CDS
GATGAAAGCCATGAAGGTTA+TGG 0.391406 1_2:-45766539 Msa0072720:CDS
GAAGAAGGAGATGTAATGTT+TGG 0.391656 1_2:-45766508 Msa0072720:CDS
CTAGCAGCACCTCCGCAAAA+TGG 0.393663 1_2:+45765098 Msa0072710:three_prime_UTR
TCTATGTCTTTACAAATTGA+AGG 0.394425 1_2:+45761759 Msa0072710:CDS
ACCTCTATTGTTGCATTTGG+AGG 0.402774 1_2:-45763890 None:intergenic
CTGCTTCCATAGGCAAGTTC+AGG 0.404957 1_2:-45763851 None:intergenic
TCCGCATTGTAAACAAAGAA+TGG 0.405433 1_2:-45765279 Msa0072720:CDS
GAGCTTGTGTCTTGTCTACA+AGG 0.410873 1_2:+45765464 Msa0072710:three_prime_UTR
CCATCAAACAAAGTCCATTT+GGG 0.414715 1_2:+45764500 Msa0072710:CDS
TTATTTGTCAGTCTAGAAAC+AGG 0.415964 1_2:-45764747 None:intergenic
ATTTGTAAAGACATAGAGAT+TGG 0.416565 1_2:-45761753 None:intergenic
TGCAAAGGCATCTCCTGTAT+TGG 0.427301 1_2:-45764813 None:intergenic
TACCCTTGTACAACCTTTGG+AGG 0.431571 1_2:+45765511 Msa0072710:three_prime_UTR
GAAACCATTACTTACCCAAA+TGG 0.439957 1_2:-45764514 None:intergenic
ATGAAACAGTTCTGGTGAAA+AGG 0.440946 1_2:+45766798 Msa0072710:three_prime_UTR
AAATGTTGGCGCAGGTCTAT+TGG 0.444124 1_2:-45765639 Msa0072720:intron
AGTAGAGCTCTGTCCTCTTC+AGG 0.445180 1_2:+45766748 Msa0072710:intron
TTGGACTCCCCTGCTTCCAT+AGG 0.448381 1_2:-45763861 None:intergenic
GTCTTAAAAGGTTTGGATGT+AGG 0.449657 1_2:+45763409 Msa0072710:CDS
AGACAAGGAATGGGTGTTGG+AGG 0.450682 1_2:+45763117 Msa0072710:CDS
TGAAGAGGACAGAGCTCTAC+TGG 0.451227 1_2:-45766746 Msa0072720:intron
CTGAACTTGCCTATGGAAGC+AGG 0.452208 1_2:+45763852 Msa0072710:CDS
TTGAAATACTTTGGTTTCCT+GGG 0.453521 1_2:+45765598 Msa0072710:three_prime_UTR
TGAACACGGTTGAAATACTT+TGG 0.455750 1_2:+45765589 Msa0072710:three_prime_UTR
ATGAAAGCCATGAAGGTTAT+GGG 0.457579 1_2:-45766538 Msa0072720:CDS
GTTCAGGTACTATGATTTGA+AGG 0.462265 1_2:+45762844 Msa0072710:intron
GTGTCTTGTCTACAAGGTCT+GGG 0.462415 1_2:+45765470 Msa0072710:three_prime_UTR
CCGCATTGTAAACAAAGAAT+GGG 0.467266 1_2:-45765278 Msa0072720:CDS
TGGGAATATTCTCACAAGAA+AGG 0.469421 1_2:-45765259 Msa0072720:CDS
CATGACTAGTAGACAAGGAA+TGG 0.471106 1_2:+45763107 Msa0072710:CDS
TATACTTACTTGAGACCATT+GGG 0.478333 1_2:-45762460 None:intergenic
GGAGTAGAGGGCATGCGAGT+TGG 0.478765 1_2:+45763430 Msa0072710:CDS
ATATACTTACTTGAGACCAT+TGG 0.481885 1_2:-45762461 None:intergenic
GTAGAGGGCATGCGAGTTGG+AGG 0.484472 1_2:+45763433 Msa0072710:CDS
ATTGGTGGCATGACAAATAC+AGG 0.484625 1_2:-45765621 Msa0072720:CDS
GTTATGGGAGCTATTGAAGA+AGG 0.486560 1_2:-45766523 Msa0072720:CDS
TCCTCCAAATGCAACAATAG+AGG 0.487414 1_2:+45763889 Msa0072710:CDS
AGGTACTATGATTTGAAGGT+TGG 0.487515 1_2:+45762848 Msa0072710:intron
TGTTCTACATATGTTCATGA+TGG 0.487786 1_2:+45764955 Msa0072710:three_prime_UTR
GTTCCTCCTGAACTTGCCTA+TGG 0.490441 1_2:+45763845 Msa0072710:CDS
AAATTATCTTCAGATGGAGC+AGG 0.490796 1_2:+45766565 Msa0072710:three_prime_UTR
CAAATAACAGACCAATATCA+TGG 0.497972 1_2:+45761467 Msa0072710:exon
CTGGTAGGGCTGCTCTTCTA+GGG 0.498958 1_2:-45764682 None:intergenic
ATCTCAAAATTATCTTCAGA+TGG 0.502531 1_2:+45766559 Msa0072710:three_prime_UTR
CCTTGTACAACCTTTGGAGG+TGG 0.503514 1_2:+45765514 Msa0072710:three_prime_UTR
CCACCTCCAAAGGTTGTACA+AGG 0.506231 1_2:-45765514 Msa0072720:CDS
GAAGAAGTAGAAGATGAGGC+TGG 0.507844 1_2:-45766823 Msa0072720:CDS
TCCTTCTCAATAGTGTAAGT+TGG 0.508185 1_2:+45765442 Msa0072710:three_prime_UTR
GGTTTGGATGTAGGAGTAGA+GGG 0.508312 1_2:+45763418 Msa0072710:CDS
AGGTGAAGAAGTAGAAGATG+AGG 0.510258 1_2:-45766827 Msa0072720:CDS
GGGCATGCGAGTTGGAGGCC+AGG 0.512087 1_2:+45763438 Msa0072710:CDS
CAGCCCTACGGATTTGATGT+AGG 0.512577 1_2:+45763367 Msa0072710:intron
TGGATGTGAGAGTGCAATGA+AGG 0.512937 1_2:-45761530 None:intergenic
CCAGAAATTATCTGCGGTAG+CGG 0.525395 1_2:+45765179 Msa0072710:three_prime_UTR
GGCATGACAAATACAGGCCC+AGG 0.525776 1_2:-45765615 Msa0072720:CDS
GATTTCAAAACTTTGCCCAA+TGG 0.533176 1_2:+45762445 Msa0072710:CDS
CAAGGAATGGGTGTTGGAGG+AGG 0.537182 1_2:+45763120 Msa0072710:CDS
CACTATGTTGCTAAATGGAG+GGG 0.538954 1_2:+45763075 Msa0072710:CDS
TGACATGAAATTCAAGTTGG+AGG 0.541260 1_2:-45764998 None:intergenic
AGAAGTAAATCTGGATTCAC+AGG 0.541558 1_2:-45766476 Msa0072720:intron
ATTGTTGAAGGCTAATGCAA+TGG 0.545273 1_2:+45764617 Msa0072710:exon
TTTAAATGATTGCAGCCCTA+CGG 0.545676 1_2:+45763355 Msa0072710:intron
GAGAAAGAGAATATAGAGTG+AGG 0.545963 1_2:-45761374 None:intergenic
CTTCGTATGGTGGCCCTGCA+TGG 0.548737 1_2:+45765386 Msa0072710:three_prime_UTR
ACTGCCGTAAAGATTGTTGA+AGG 0.549452 1_2:+45764605 Msa0072710:CDS
AGGTTTGGATGTAGGAGTAG+AGG 0.549659 1_2:+45763417 Msa0072710:CDS
TTCACTATGTTGCTAAATGG+AGG 0.551720 1_2:+45763073 Msa0072710:CDS
ATGACTAGTAGACAAGGAAT+GGG 0.556838 1_2:+45763108 Msa0072710:CDS
TGTCTTTACAAATTGAAGGA+AGG 0.560268 1_2:+45761763 Msa0072710:CDS
TGCAATGAAGGAGTGAAGGA+TGG 0.565510 1_2:-45761518 None:intergenic
TCCTTGTCTACTAGTCATGA+AGG 0.569260 1_2:-45763103 None:intergenic
GAACTAAGAGCCATCTGGTA+GGG 0.572462 1_2:-45764696 None:intergenic
AGTAGACAAGGAATGGGTGT+TGG 0.572841 1_2:+45763114 Msa0072710:CDS
TGAACTTGCCTATGGAAGCA+GGG 0.574012 1_2:+45763853 Msa0072710:CDS
TCACTATGTTGCTAAATGGA+GGG 0.574035 1_2:+45763074 Msa0072710:CDS
ATATGACATGAAATTCAAGT+TGG 0.577879 1_2:-45765001 None:intergenic
ATTAAAGCAGAGGGTCAAGA+AGG 0.580470 1_2:-45766847 Msa0072720:CDS
AGACTTACAATGTCTTCGTA+TGG 0.580822 1_2:+45765373 Msa0072710:intron
ATTGAGAAGGATGGCAGCAA+TGG 0.582219 1_2:-45765430 Msa0072720:CDS
GAAATTATCTGCGGTAGCGG+TGG 0.585724 1_2:+45765182 Msa0072710:three_prime_UTR
AGAGTGCAATGAAGGAGTGA+AGG 0.585916 1_2:-45761522 None:intergenic
TATGATTTGAAGGTTGGCGA+TGG 0.588743 1_2:+45762854 Msa0072710:CDS
CCCGAACCCATTAAAGCAGA+GGG 0.588808 1_2:-45766856 Msa0072720:CDS
CCCATTCTTTGTTTACAATG+CGG 0.589870 1_2:+45765278 Msa0072710:three_prime_UTR
GGAGATGTAATGTTTGGCTC+TGG 0.590473 1_2:-45766502 Msa0072720:CDS
GTGAAGGATGGTGATGATGA+TGG 0.591993 1_2:-45761506 None:intergenic
AGAGTGAACTAAGAGCCATC+TGG 0.593609 1_2:-45764701 None:intergenic
TCCCGAACCCATTAAAGCAG+AGG 0.593821 1_2:-45766857 Msa0072720:CDS
TGCATCATAAGATTCCATGC+AGG 0.594356 1_2:-45765400 Msa0072720:CDS
AATGGGTGTTGGAGGAGGAA+CGG 0.601229 1_2:+45763125 Msa0072710:CDS
GCATCATAAGATTCCATGCA+GGG 0.604220 1_2:-45765399 Msa0072720:CDS
TGTTGGCGCAGGTCTATTGG+TGG 0.605871 1_2:-45765636 Msa0072720:intron
CTTCCATAGGCAAGTTCAGG+AGG 0.606900 1_2:-45763848 None:intergenic
CTTACAATGTCTTCGTATGG+TGG 0.608002 1_2:+45765376 Msa0072710:intron
ACTTACACTATTGAGAAGGA+TGG 0.610559 1_2:-45765439 Msa0072720:CDS
GTTTCATGGTGATGAAAATG+AGG 0.610771 1_2:-45766782 Msa0072720:CDS
AGAAGAGCAGCCCTACCAGA+TGG 0.611921 1_2:+45764686 Msa0072710:three_prime_UTR
TTCGCCTACATCAAATCCGT+AGG 0.612715 1_2:-45763371 None:intergenic
TCATGACAATCCACCTCCAA+AGG 0.613499 1_2:-45765524 Msa0072720:CDS
GAGACGAATTCAGGAAGCAA+TGG 0.614187 1_2:-45766596 Msa0072720:CDS
AAGAAGTAGAAGATGAGGCT+GGG 0.617278 1_2:-45766822 Msa0072720:CDS
TCCAACTTACACTATTGAGA+AGG 0.618655 1_2:-45765443 Msa0072720:CDS
TGAACTAAGAGCCATCTGGT+AGG 0.620922 1_2:-45764697 None:intergenic
ATACAGGAGATGCCTTTGCA+AGG 0.629002 1_2:+45764816 Msa0072710:three_prime_UTR
GAACTTGCCTATGGAAGCAG+GGG 0.631222 1_2:+45763854 Msa0072710:CDS
ATTCAAGTTGGAGGAATCAG+TGG 0.635146 1_2:-45764989 None:intergenic
TCGCCTACATCAAATCCGTA+GGG 0.638693 1_2:-45763370 None:intergenic
TGGAGTTTATGCATGTGATG+TGG 0.642215 1_2:+45761929 Msa0072710:CDS
GATGGAGCTGAAGCTGTGAA+AGG 0.645046 1_2:+45762872 Msa0072710:CDS
GAAGAATGTGAACAGCTGCA+TGG 0.646127 1_2:-45761708 None:intergenic
ACCTTCATGACTAGTAGACA+AGG 0.648553 1_2:+45763102 Msa0072710:CDS
TAACTAACTAACATGTTGTG+AGG 0.649034 1_2:-45761806 None:intergenic
GGAAGCTATTGATCCTGAAG+AGG 0.658125 1_2:-45766761 Msa0072720:CDS
TTTAAGTGCACATTTGAACG+TGG 0.660103 1_2:-45765235 Msa0072720:CDS
CAAGTTGGAGGAATCAGTGG+TGG 0.660922 1_2:-45764986 None:intergenic
GTAGGGCTGCTCTTCTAGGG+CGG 0.669196 1_2:-45764679 None:intergenic
GTGTTCATACTGGATATGAG+TGG 0.672306 1_2:-45765573 Msa0072720:CDS
GATGTAGGCGAATCTGCGAG+AGG 0.684048 1_2:+45763382 Msa0072710:CDS
CACCTCCAAAGGTTGTACAA+GGG 0.704703 1_2:-45765513 Msa0072720:CDS
ACTCATATCCAGTATGAACA+CGG 0.712518 1_2:+45765575 Msa0072710:three_prime_UTR
AGAGTGCCAGAAATTATCTG+CGG 0.744813 1_2:+45765173 Msa0072710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTATTTTTCTTTAGTT+TGG - chr1_2:45761412-45761431 None:intergenic 10.0%
!!! TTTATTTTTTATTTATGATG+TGG - chr1_2:45761999-45762018 None:intergenic 10.0%
!!! AATTTAACAACATTTTAAAT+GGG - chr1_2:45762305-45762324 None:intergenic 10.0%
!!! AAATTTAACAACATTTTAAA+TGG - chr1_2:45762306-45762325 None:intergenic 10.0%
!! ATTAATATATTCAATTTATG+TGG - chr1_2:45763995-45764014 None:intergenic 10.0%
!!! TTTAATTGTTTATATTTTTG+TGG - chr1_2:45764866-45764885 None:intergenic 10.0%
!!! TGATATATATTGTTATTTTA+GGG - chr1_2:45765719-45765738 Msa0072720:intron 10.0%
!!! ATGATATATATTGTTATTTT+AGG - chr1_2:45765720-45765739 Msa0072720:intron 10.0%
!! TTTACAACAAAAATTCAAAT+AGG + chr1_2:45761679-45761698 Msa0072710:CDS 15.0%
!!! ATGTTATTTGAATATCAATT+TGG + chr1_2:45762046-45762065 Msa0072710:intron 15.0%
!!! TGTTATTTGAATATCAATTT+GGG + chr1_2:45762047-45762066 Msa0072710:intron 15.0%
!! ATTTGATTAACAGATATAAT+AGG + chr1_2:45762142-45762161 Msa0072710:intron 15.0%
!!! ATAGTTTCTTTTAAGATATT+TGG - chr1_2:45765071-45765090 None:intergenic 15.0%
!! AATACATGAAATAAGTAATT+TGG + chr1_2:45765312-45765331 Msa0072710:intron 15.0%
!!! ATTTTGGAATACTATTATAA+AGG - chr1_2:45765842-45765861 Msa0072720:intron 15.0%
!! CTTAGAATTATAAGATTCTT+AGG + chr1_2:45761870-45761889 Msa0072710:intron 20.0%
!!! ACTTTATTAACGACAATTTT+AGG - chr1_2:45762206-45762225 None:intergenic 20.0%
!! AAATTGTCGTTAATAAAGTT+CGG + chr1_2:45762207-45762226 Msa0072710:intron 20.0%
!!! AATTATGCTTTTCTTGTTTT+TGG + chr1_2:45762385-45762404 Msa0072710:intron 20.0%
!!! GTATCATCATATCTATTTTA+AGG - chr1_2:45762610-45762629 None:intergenic 20.0%
!! TAAAATAGATATGATGATAC+AGG + chr1_2:45762610-45762629 Msa0072710:intron 20.0%
!! CTTAAAATAAATGTACTTCT+AGG - chr1_2:45762646-45762665 None:intergenic 20.0%
!! TAAGATATATAAAGCTAGTT+AGG + chr1_2:45762794-45762813 Msa0072710:intron 20.0%
!! AAGATATATAAAGCTAGTTA+GGG + chr1_2:45762795-45762814 Msa0072710:intron 20.0%
!! AACTCATAACAATCAATTAA+AGG - chr1_2:45763185-45763204 None:intergenic 20.0%
!!! TTTATGCAAAATTTTCTTGT+TGG + chr1_2:45763315-45763334 Msa0072710:intron 20.0%
!!! TTATGCAAAATTTTCTTGTT+GGG + chr1_2:45763316-45763335 Msa0072710:intron 20.0%
!! GATTTCAATGAAATTTGTAA+CGG - chr1_2:45763501-45763520 None:intergenic 20.0%
!! AAATCATGAATATCAGTAAA+TGG + chr1_2:45763516-45763535 Msa0072710:intron 20.0%
!!! TGTAAATTTTGCATCTTTAA+AGG - chr1_2:45763688-45763707 None:intergenic 20.0%
!! TTAAAGATGCAAAATTTACA+AGG + chr1_2:45763688-45763707 Msa0072710:intron 20.0%
!! TATATGTAGTATCAAATTAC+AGG - chr1_2:45763926-45763945 None:intergenic 20.0%
!!! AGAATGATTATTTCTTTTGA+TGG - chr1_2:45764234-45764253 None:intergenic 20.0%
!! ATCCATAATCAATAAATGTA+GGG - chr1_2:45764371-45764390 None:intergenic 20.0%
!!! GTAGTTAATTTCAATGATTT+TGG + chr1_2:45764572-45764591 Msa0072710:intron 20.0%
!!! AAAACTTTCAGATTTTAAGT+CGG + chr1_2:45765803-45765822 Msa0072710:intron 20.0%
!! GTTCAGAAAAAAAATTAGTT+AGG - chr1_2:45765881-45765900 Msa0072720:intron 20.0%
!! TAACATTAAAACTAGAATCA+TGG + chr1_2:45766388-45766407 Msa0072710:intron 20.0%
! ATTTGTAAAGACATAGAGAT+TGG - chr1_2:45761756-45761775 None:intergenic 25.0%
! TCTATGTCTTTACAAATTGA+AGG + chr1_2:45761759-45761778 Msa0072710:CDS 25.0%
!! TTTAAAATGTTGTCGTAGTT+AGG - chr1_2:45762082-45762101 None:intergenic 25.0%
!! CTACGACAACATTTTAAATA+TGG + chr1_2:45762084-45762103 Msa0072710:intron 25.0%
!!! AAAGTTTTGAAATCACTTTC+AGG - chr1_2:45762439-45762458 None:intergenic 25.0%
! TATTCATTAGTCATTTGAGT+CGG - chr1_2:45762550-45762569 None:intergenic 25.0%
! ACTAATGAAACTAAAGTCAT+AGG - chr1_2:45762697-45762716 None:intergenic 25.0%
! AACATAGTGAATCTACAATA+TGG - chr1_2:45763064-45763083 None:intergenic 25.0%
! ATTGATTGTTATGAGTTAAC+AGG + chr1_2:45763188-45763207 Msa0072710:intron 25.0%
!! TATGCAAAATTTTCTTGTTG+GGG + chr1_2:45763317-45763336 Msa0072710:intron 25.0%
! AATGAACAACTACATTGAAT+TGG + chr1_2:45763558-45763577 Msa0072710:intron 25.0%
!! TCTTTTTAGATATCTAGAGA+CGG - chr1_2:45764200-45764219 None:intergenic 25.0%
!!! AAAATTAGTTCTTTTTCTGC+CGG + chr1_2:45764304-45764323 Msa0072710:intron 25.0%
! TCCATAATCAATAAATGTAG+GGG - chr1_2:45764370-45764389 None:intergenic 25.0%
! GATCCATAATCAATAAATGT+AGG - chr1_2:45764372-45764391 None:intergenic 25.0%
! AGTATATAAGATGCAGAATT+AGG - chr1_2:45764397-45764416 None:intergenic 25.0%
!! ATTTTCACCTTTGTAACTTT+CGG + chr1_2:45764451-45764470 Msa0072710:intron 25.0%
! TGTATTCAATATTCCAATAC+AGG + chr1_2:45764800-45764819 Msa0072710:three_prime_UTR 25.0%
! TTGCTTGAAAAAAATTGACT+TGG - chr1_2:45764918-45764937 None:intergenic 25.0%
! ATATGACATGAAATTCAAGT+TGG - chr1_2:45765004-45765023 None:intergenic 25.0%
! ACTTATTTCATGTATTTGAC+AGG - chr1_2:45765308-45765327 Msa0072720:intron 25.0%
! CTTATGTAAGTGATAAATGT+TGG - chr1_2:45765656-45765675 Msa0072720:intron 25.0%
! AATACTATTATAAAGGAGGT+GGG - chr1_2:45765835-45765854 Msa0072720:intron 25.0%
! TTGGAATACTATTATAAAGG+AGG - chr1_2:45765839-45765858 Msa0072720:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_2:45766085-45766104 Msa0072710:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_2:45766227-45766246 Msa0072710:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_2:45766267-45766286 Msa0072720:intron 25.0%
!! ATTTTCACACTTGGTAAAAT+GGG - chr1_2:45766433-45766452 Msa0072720:intron 25.0%
!! ATTTGTATGATTTTCACACT+TGG - chr1_2:45766442-45766461 Msa0072720:intron 25.0%
! ATCTCAAAATTATCTTCAGA+TGG + chr1_2:45766559-45766578 Msa0072710:three_prime_UTR 25.0%
! TGAGTTTGTGTTAAGTATAT+AGG - chr1_2:45766686-45766705 Msa0072720:intron 25.0%
CAAATAACAGACCAATATCA+TGG + chr1_2:45761467-45761486 Msa0072710:exon 30.0%
!!! TTCTACAACAGTTTTATTGG+AGG - chr1_2:45761733-45761752 None:intergenic 30.0%
!! TGGTTCTACAACAGTTTTAT+TGG - chr1_2:45761736-45761755 None:intergenic 30.0%
TGTCTTTACAAATTGAAGGA+AGG + chr1_2:45761763-45761782 Msa0072710:CDS 30.0%
TAACTAACTAACATGTTGTG+AGG - chr1_2:45761809-45761828 None:intergenic 30.0%
! TATTTTATGTGATCAGTTGC+TGG + chr1_2:45761909-45761928 Msa0072710:intron 30.0%
! GAAATCACTTTCAGGAATTT+TGG - chr1_2:45762431-45762450 None:intergenic 30.0%
TATACTTACTTGAGACCATT+GGG - chr1_2:45762463-45762482 None:intergenic 30.0%
ATATACTTACTTGAGACCAT+TGG - chr1_2:45762464-45762483 None:intergenic 30.0%
!! TAGTACACTAGTCTTTAGTT+AGG + chr1_2:45762713-45762732 Msa0072710:intron 30.0%
!! AGTACACTAGTCTTTAGTTA+GGG + chr1_2:45762714-45762733 Msa0072710:intron 30.0%
TGTAATCTTGAAACTTTCAC+CGG + chr1_2:45762748-45762767 Msa0072710:intron 30.0%
ATGAAATCAACTAGAAAAGC+CGG - chr1_2:45762770-45762789 None:intergenic 30.0%
AAATATGTTTCGCTCATTAG+TGG + chr1_2:45762927-45762946 Msa0072710:intron 30.0%
AGATTCACTATGTTGCTAAA+TGG + chr1_2:45763070-45763089 Msa0072710:intron 30.0%
CACAATGTATAAATCTTCTG+AGG + chr1_2:45763285-45763304 Msa0072710:intron 30.0%
AGGAAATGTCTTAAAAGGTT+TGG + chr1_2:45763402-45763421 Msa0072710:CDS 30.0%
! ATGAAATTTGTAACGGAACA+AGG - chr1_2:45763494-45763513 None:intergenic 30.0%
TGCAAAATTTACAAGGAAGT+TGG + chr1_2:45763695-45763714 Msa0072710:intron 30.0%
GCAAAATTTACAAGGAAGTT+GGG + chr1_2:45763696-45763715 Msa0072710:intron 30.0%
ATAGTATGACTCTTGTGATA+TGG - chr1_2:45763960-45763979 None:intergenic 30.0%
TTGATCAATTAGAGTTGTTC+TGG - chr1_2:45764055-45764074 None:intergenic 30.0%
CTCTAATTGATCAAATTCCA+TGG + chr1_2:45764061-45764080 Msa0072710:intron 30.0%
! TCCCCTACATTTATTGATTA+TGG + chr1_2:45764366-45764385 Msa0072710:intron 30.0%
! TTAGCCTTCAACAATCTTTA+CGG - chr1_2:45764612-45764631 None:intergenic 30.0%
TTATTTGTCAGTCTAGAAAC+AGG - chr1_2:45764750-45764769 None:intergenic 30.0%
TGTTCTACATATGTTCATGA+TGG + chr1_2:45764955-45764974 Msa0072710:three_prime_UTR 30.0%
TGTAAGTCTATTGTTCATGA+TGG - chr1_2:45765362-45765381 Msa0072720:intron 30.0%
! TTGAAATACTTTGGTTTCCT+GGG + chr1_2:45765598-45765617 Msa0072710:three_prime_UTR 30.0%
ATACTATTATAAAGGAGGTG+GGG - chr1_2:45765834-45765853 Msa0072720:intron 30.0%
GAATACTATTATAAAGGAGG+TGG - chr1_2:45765836-45765855 Msa0072720:intron 30.0%
! AGTACAAAGTTCAGAGATTT+TGG - chr1_2:45765858-45765877 Msa0072720:intron 30.0%
! TATTTTCCATGTAGTATGAC+CGG + chr1_2:45765905-45765924 Msa0072710:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_2:45766081-45766100 Msa0072720:intron 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_2:45766151-45766170 Msa0072720:intron 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_2:45766152-45766171 Msa0072710:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+TGG - chr1_2:45766220-45766239 Msa0072720:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_2:45766232-45766251 Msa0072720:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_2:45766271-45766290 Msa0072710:intron 30.0%
! GATTTTCACACTTGGTAAAA+TGG - chr1_2:45766434-45766453 Msa0072720:intron 30.0%
GAGAAAGAGAATATAGAGTG+AGG - chr1_2:45761377-45761396 None:intergenic 35.0%
AAGAGAGAGTTCCATGATAT+TGG - chr1_2:45761481-45761500 None:intergenic 35.0%
GAAGTTACTTGTGAAGAGAT+TGG - chr1_2:45761553-45761572 None:intergenic 35.0%
CTGAATTGTCTTAACAACAC+AGG + chr1_2:45761642-45761661 Msa0072710:intron 35.0%
! TTGAATATCAATTTGGGACG+CGG + chr1_2:45762053-45762072 Msa0072710:intron 35.0%
CGTTAATAAAGTTCGGTTGA+CGG + chr1_2:45762214-45762233 Msa0072710:intron 35.0%
GATTTCAAAACTTTGCCCAA+TGG + chr1_2:45762445-45762464 Msa0072710:CDS 35.0%
! GAATTTTCTACCCTCTACTT+TGG + chr1_2:45762521-45762540 Msa0072710:intron 35.0%
GACAAAACTCTGATATGTTC+AGG + chr1_2:45762828-45762847 Msa0072710:intron 35.0%
GTTCAGGTACTATGATTTGA+AGG + chr1_2:45762844-45762863 Msa0072710:intron 35.0%
AGGTACTATGATTTGAAGGT+TGG + chr1_2:45762848-45762867 Msa0072710:intron 35.0%
TTCACTATGTTGCTAAATGG+AGG + chr1_2:45763073-45763092 Msa0072710:CDS 35.0%
TCACTATGTTGCTAAATGGA+GGG + chr1_2:45763074-45763093 Msa0072710:CDS 35.0%
ATGACTAGTAGACAAGGAAT+GGG + chr1_2:45763108-45763127 Msa0072710:CDS 35.0%
!! TAGATTTTAGCCGAGTTACT+TGG - chr1_2:45763157-45763176 None:intergenic 35.0%
GGTTCTTCCATGTATAAACA+AGG + chr1_2:45763209-45763228 Msa0072710:intron 35.0%
!! GAACATGCCTTGTTTATACA+TGG - chr1_2:45763219-45763238 None:intergenic 35.0%
TTTAAATGATTGCAGCCCTA+CGG + chr1_2:45763355-45763374 Msa0072710:intron 35.0%
GTCTTAAAAGGTTTGGATGT+AGG + chr1_2:45763409-45763428 Msa0072710:CDS 35.0%
AGTCCCTAGACAGTTAAATT+TGG + chr1_2:45763661-45763680 Msa0072710:intron 35.0%
GGTCCAAATTTAACTGTCTA+GGG - chr1_2:45763667-45763686 None:intergenic 35.0%
AGGTCCAAATTTAACTGTCT+AGG - chr1_2:45763668-45763687 None:intergenic 35.0%
AAATTTACAAGGAAGTTGGG+AGG + chr1_2:45763699-45763718 Msa0072710:intron 35.0%
AATTTACAAGGAAGTTGGGA+GGG + chr1_2:45763700-45763719 Msa0072710:intron 35.0%
! ATTTAGTTGACTTTCTGCAG+CGG + chr1_2:45763813-45763832 Msa0072710:intron 35.0%
TTGCATTTGGAGGAATTTCT+TGG - chr1_2:45763883-45763902 None:intergenic 35.0%
TTCACCTCTATTGTTGCATT+TGG - chr1_2:45763896-45763915 None:intergenic 35.0%
CTTGTGATATGGAGCTAAAA+TGG - chr1_2:45763949-45763968 None:intergenic 35.0%
! TAGAGTTGTTCTGGTGTTAA+TGG - chr1_2:45764046-45764065 None:intergenic 35.0%
TGGAAATGGTATTTAAGCCA+TGG - chr1_2:45764081-45764100 None:intergenic 35.0%
TGCTAACTCAGAAATGGAAA+TGG - chr1_2:45764095-45764114 None:intergenic 35.0%
TTTCCATTTCTGAGTTAGCA+AGG + chr1_2:45764095-45764114 Msa0072710:intron 35.0%
CAGTTAAACTGATTGAACCT+TGG - chr1_2:45764142-45764161 None:intergenic 35.0%
GGTTCAATCAGTTTAACTGA+AGG + chr1_2:45764143-45764162 Msa0072710:intron 35.0%
CCATCAAACAAAGTCCATTT+GGG + chr1_2:45764500-45764519 Msa0072710:CDS 35.0%
AAGTCCATTTGGGTAAGTAA+TGG + chr1_2:45764510-45764529 Msa0072710:intron 35.0%
GAAACCATTACTTACCCAAA+TGG - chr1_2:45764517-45764536 None:intergenic 35.0%
! TCAATGATTTTGGATTCTGC+AGG + chr1_2:45764582-45764601 Msa0072710:intron 35.0%
ATTGTTGAAGGCTAATGCAA+TGG + chr1_2:45764617-45764636 Msa0072710:exon 35.0%
!! AACTTTTTGACTCCTTGCAA+AGG - chr1_2:45764831-45764850 None:intergenic 35.0%
GAGTCAAAAAGTTCATGAGA+CGG + chr1_2:45764838-45764857 Msa0072710:three_prime_UTR 35.0%
!! TGACATGAAATTCAAGTTGG+AGG - chr1_2:45765001-45765020 None:intergenic 35.0%
! GGAAGAACTATTGTTACTTC+TGG - chr1_2:45765050-45765069 None:intergenic 35.0%
TTTAAGTGCACATTTGAACG+TGG - chr1_2:45765238-45765257 Msa0072720:CDS 35.0%
TGGGAATATTCTCACAAGAA+AGG - chr1_2:45765262-45765281 Msa0072720:CDS 35.0%
CCGCATTGTAAACAAAGAAT+GGG - chr1_2:45765281-45765300 Msa0072720:CDS 35.0%
! CCCATTCTTTGTTTACAATG+CGG + chr1_2:45765278-45765297 Msa0072710:three_prime_UTR 35.0%
TCCGCATTGTAAACAAAGAA+TGG - chr1_2:45765282-45765301 Msa0072720:CDS 35.0%
AGACTTACAATGTCTTCGTA+TGG + chr1_2:45765373-45765392 Msa0072710:intron 35.0%
ACTTACACTATTGAGAAGGA+TGG - chr1_2:45765442-45765461 Msa0072720:CDS 35.0%
TCCTTCTCAATAGTGTAAGT+TGG + chr1_2:45765442-45765461 Msa0072710:three_prime_UTR 35.0%
TCCAACTTACACTATTGAGA+AGG - chr1_2:45765446-45765465 Msa0072720:CDS 35.0%
TTATACCCTTGTACAACCTT+TGG + chr1_2:45765508-45765527 Msa0072710:three_prime_UTR 35.0%
ACTCATATCCAGTATGAACA+CGG + chr1_2:45765575-45765594 Msa0072710:three_prime_UTR 35.0%
TATTTCAACCGTGTTCATAC+TGG - chr1_2:45765586-45765605 Msa0072720:CDS 35.0%
TGAACACGGTTGAAATACTT+TGG + chr1_2:45765589-45765608 Msa0072710:three_prime_UTR 35.0%
! GTTGAAATACTTTGGTTTCC+TGG + chr1_2:45765597-45765616 Msa0072710:three_prime_UTR 35.0%
TACTATTATAAAGGAGGTGG+GGG - chr1_2:45765833-45765852 Msa0072720:intron 35.0%
AGACTAGACAAGATAGGATT+AGG + chr1_2:45766024-45766043 Msa0072710:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_2:45766074-45766093 Msa0072710:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_2:45766094-45766113 Msa0072710:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_2:45766099-45766118 Msa0072710:intron 35.0%
AAGAAGAGTAGATCAAATGG+CGG + chr1_2:45766155-45766174 Msa0072710:intron 35.0%
! GTTTCTCGAATGGTTTTCTT+GGG - chr1_2:45766210-45766229 Msa0072720:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_2:45766239-45766258 Msa0072710:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_2:45766251-45766270 Msa0072710:intron 35.0%
AGAAGTAAATCTGGATTCAC+AGG - chr1_2:45766479-45766498 Msa0072720:CDS 35.0%
GAAGAAGGAGATGTAATGTT+TGG - chr1_2:45766511-45766530 Msa0072720:CDS 35.0%
ATGAAAGCCATGAAGGTTAT+GGG - chr1_2:45766541-45766560 Msa0072720:CDS 35.0%
!!! TTTTGAGATGAAAGCCATGA+AGG - chr1_2:45766548-45766567 Msa0072720:CDS 35.0%
AAATTATCTTCAGATGGAGC+AGG + chr1_2:45766565-45766584 Msa0072710:three_prime_UTR 35.0%
! GTTTCATGGTGATGAAAATG+AGG - chr1_2:45766785-45766804 Msa0072720:CDS 35.0%
! TTTTCACCAGAACTGTTTCA+TGG - chr1_2:45766799-45766818 Msa0072720:CDS 35.0%
! ATGAAACAGTTCTGGTGAAA+AGG + chr1_2:45766798-45766817 Msa0072710:three_prime_UTR 35.0%
TGGAGTTTATGCATGTGATG+TGG + chr1_2:45761929-45761948 Msa0072710:CDS 40.0%
!!! TTTGGTTTTCTGCAGCTAAG+AGG + chr1_2:45762403-45762422 Msa0072710:intron 40.0%
TATGATTTGAAGGTTGGCGA+TGG + chr1_2:45762854-45762873 Msa0072710:CDS 40.0%
CAGACCTGACTCATATAACT+CGG + chr1_2:45762967-45762986 Msa0072710:intron 40.0%
AACTCCGAGTTATATGAGTC+AGG - chr1_2:45762974-45762993 None:intergenic 40.0%
CACTATGTTGCTAAATGGAG+GGG + chr1_2:45763075-45763094 Msa0072710:CDS 40.0%
ACCTTCATGACTAGTAGACA+AGG + chr1_2:45763102-45763121 Msa0072710:CDS 40.0%
TCCTTGTCTACTAGTCATGA+AGG - chr1_2:45763106-45763125 None:intergenic 40.0%
CATGACTAGTAGACAAGGAA+TGG + chr1_2:45763107-45763126 Msa0072710:CDS 40.0%
GCGAGAGGAAATGTCTTAAA+AGG + chr1_2:45763397-45763416 Msa0072710:CDS 40.0%
TCCTCCAAATGCAACAATAG+AGG + chr1_2:45763889-45763908 Msa0072710:CDS 40.0%
ACCTCTATTGTTGCATTTGG+AGG - chr1_2:45763893-45763912 None:intergenic 40.0%
TCACCTTGCTAACTCAGAAA+TGG - chr1_2:45764101-45764120 None:intergenic 40.0%
CAAGGTGAATTTGTCTCCTT+TGG + chr1_2:45764113-45764132 Msa0072710:intron 40.0%
GATATCTAGAGACGGTTAAG+TGG - chr1_2:45764192-45764211 None:intergenic 40.0%
TGAGTTCAGATGCACATAAC+CGG - chr1_2:45764326-45764345 None:intergenic 40.0%
ATGTGCATCTGAACTCATGT+TGG + chr1_2:45764329-45764348 Msa0072710:intron 40.0%
GCCATCAAACAAAGTCCATT+TGG + chr1_2:45764499-45764518 Msa0072710:CDS 40.0%
! CCCAAATGGACTTTGTTTGA+TGG - chr1_2:45764503-45764522 None:intergenic 40.0%
ACTGCCGTAAAGATTGTTGA+AGG + chr1_2:45764605-45764624 Msa0072710:CDS 40.0%
!! ATTCAAGTTGGAGGAATCAG+TGG - chr1_2:45764992-45765011 None:intergenic 40.0%
! GCTACAAGACTACCATTTTG+CGG - chr1_2:45765113-45765132 None:intergenic 40.0%
! AGAGTGCCAGAAATTATCTG+CGG + chr1_2:45765173-45765192 Msa0072710:three_prime_UTR 40.0%
CTTACAATGTCTTCGTATGG+TGG + chr1_2:45765376-45765395 Msa0072710:intron 40.0%
GCATCATAAGATTCCATGCA+GGG - chr1_2:45765402-45765421 Msa0072720:CDS 40.0%
TGCATCATAAGATTCCATGC+AGG - chr1_2:45765403-45765422 Msa0072720:CDS 40.0%
GTGTTCATACTGGATATGAG+TGG - chr1_2:45765576-45765595 Msa0072720:CDS 40.0%
! ATTGGTGGCATGACAAATAC+AGG - chr1_2:45765624-45765643 Msa0072720:CDS 40.0%
TAAGTGATAAATGTTGGCGC+AGG - chr1_2:45765650-45765669 Msa0072720:intron 40.0%
ACCGGCAATGTTGTATGATA+CGG + chr1_2:45765923-45765942 Msa0072710:intron 40.0%
TCCGTATCATACAACATTGC+CGG - chr1_2:45765927-45765946 Msa0072720:intron 40.0%
TGTTGTATGATACGGAGTGT+TGG + chr1_2:45765931-45765950 Msa0072710:intron 40.0%
! GTTGTATGATACGGAGTGTT+GGG + chr1_2:45765932-45765951 Msa0072710:intron 40.0%
CACTTACTTTACTCTCGTGT+TGG - chr1_2:45765968-45765987 Msa0072720:intron 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG + chr1_2:45765971-45765990 Msa0072710:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr1_2:45766018-45766037 Msa0072710:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_2:45766142-45766161 Msa0072720:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_2:45766180-45766199 Msa0072710:intron 40.0%
! GGTTTCTCGAATGGTTTTCT+TGG - chr1_2:45766211-45766230 Msa0072720:intron 40.0%
GTTATGGGAGCTATTGAAGA+AGG - chr1_2:45766526-45766545 Msa0072720:CDS 40.0%
AATAGCTCCCATAACCTTCA+TGG + chr1_2:45766531-45766550 Msa0072710:three_prime_UTR 40.0%
GATGAAAGCCATGAAGGTTA+TGG - chr1_2:45766542-45766561 Msa0072720:CDS 40.0%
TTCCTGTGAATGTACCATTG+TGG + chr1_2:45766651-45766670 Msa0072710:intron 40.0%
! ATAGGCTAACTTGTCCACAA+TGG - chr1_2:45766668-45766687 Msa0072720:intron 40.0%
TCATCACCATGAAACAGTTC+TGG + chr1_2:45766790-45766809 Msa0072710:three_prime_UTR 40.0%
AAGAAGTAGAAGATGAGGCT+GGG - chr1_2:45766825-45766844 Msa0072720:CDS 40.0%
AGGTGAAGAAGTAGAAGATG+AGG - chr1_2:45766830-45766849 Msa0072720:CDS 40.0%
ATTAAAGCAGAGGGTCAAGA+AGG - chr1_2:45766850-45766869 Msa0072720:CDS 40.0%
TTCTTGACCCTCTGCTTTAA+TGG + chr1_2:45766849-45766868 Msa0072710:three_prime_UTR 40.0%
TCTTGACCCTCTGCTTTAAT+GGG + chr1_2:45766850-45766869 Msa0072710:three_prime_UTR 40.0%
! GTGAAGGATGGTGATGATGA+TGG - chr1_2:45761509-45761528 None:intergenic 45.0%
TGCAATGAAGGAGTGAAGGA+TGG - chr1_2:45761521-45761540 None:intergenic 45.0%
AGAGTGCAATGAAGGAGTGA+AGG - chr1_2:45761525-45761544 None:intergenic 45.0%
! TGGATGTGAGAGTGCAATGA+AGG - chr1_2:45761533-45761552 None:intergenic 45.0%
GAAGAATGTGAACAGCTGCA+TGG - chr1_2:45761711-45761730 None:intergenic 45.0%
GAGTCGGTTACCAAAGTAGA+GGG - chr1_2:45762534-45762553 None:intergenic 45.0%
TGAGTCGGTTACCAAAGTAG+AGG - chr1_2:45762535-45762554 None:intergenic 45.0%
AGTAGACAAGGAATGGGTGT+TGG + chr1_2:45763114-45763133 Msa0072710:CDS 45.0%
ACGGTACGATCCAAGTAACT+CGG + chr1_2:45763144-45763163 Msa0072710:intron 45.0%
TCGCCTACATCAAATCCGTA+GGG - chr1_2:45763373-45763392 None:intergenic 45.0%
TTCGCCTACATCAAATCCGT+AGG - chr1_2:45763374-45763393 None:intergenic 45.0%
AGGTTTGGATGTAGGAGTAG+AGG + chr1_2:45763417-45763436 Msa0072710:CDS 45.0%
GGTTTGGATGTAGGAGTAGA+GGG + chr1_2:45763418-45763437 Msa0072710:CDS 45.0%
! AGGAAGTTGGGAGGGATTTT+AGG + chr1_2:45763708-45763727 Msa0072710:intron 45.0%
TGAACTTGCCTATGGAAGCA+GGG + chr1_2:45763853-45763872 Msa0072710:CDS 45.0%
TTTGTCTCCTTTGGACACCA+AGG + chr1_2:45764122-45764141 Msa0072710:intron 45.0%
!! GATTGAACCTTGGTGTCCAA+AGG - chr1_2:45764132-45764151 None:intergenic 45.0%
GAACTCATGTTGGCAGGAAA+AGG + chr1_2:45764339-45764358 Msa0072710:intron 45.0%
CTGCAGTCCGAAAGTTACAA+AGG - chr1_2:45764461-45764480 None:intergenic 45.0%
TGTAACTTTCGGACTGCAGA+TGG + chr1_2:45764462-45764481 Msa0072710:intron 45.0%
GAACTAAGAGCCATCTGGTA+GGG - chr1_2:45764699-45764718 None:intergenic 45.0%
TGAACTAAGAGCCATCTGGT+AGG - chr1_2:45764700-45764719 None:intergenic 45.0%
AGAGTGAACTAAGAGCCATC+TGG - chr1_2:45764704-45764723 None:intergenic 45.0%
!! TGCAAAGGCATCTCCTGTAT+TGG - chr1_2:45764816-45764835 None:intergenic 45.0%
ATACAGGAGATGCCTTTGCA+AGG + chr1_2:45764816-45764835 Msa0072710:three_prime_UTR 45.0%
! ACAAGACTACCATTTTGCGG+AGG - chr1_2:45765110-45765129 None:intergenic 45.0%
GTAGCTTTCATCAAGCTTGC+AGG + chr1_2:45765128-45765147 Msa0072710:three_prime_UTR 45.0%
CCAGAAATTATCTGCGGTAG+CGG + chr1_2:45765179-45765198 Msa0072710:three_prime_UTR 45.0%
ATTGAGAAGGATGGCAGCAA+TGG - chr1_2:45765433-45765452 Msa0072720:CDS 45.0%
GAGCTTGTGTCTTGTCTACA+AGG + chr1_2:45765464-45765483 Msa0072710:three_prime_UTR 45.0%
TGTGTCTTGTCTACAAGGTC+TGG + chr1_2:45765469-45765488 Msa0072710:three_prime_UTR 45.0%
GTGTCTTGTCTACAAGGTCT+GGG + chr1_2:45765470-45765489 Msa0072710:three_prime_UTR 45.0%
TACCCTTGTACAACCTTTGG+AGG + chr1_2:45765511-45765530 Msa0072710:three_prime_UTR 45.0%
CACCTCCAAAGGTTGTACAA+GGG - chr1_2:45765516-45765535 Msa0072720:CDS 45.0%
TCATGACAATCCACCTCCAA+AGG - chr1_2:45765527-45765546 Msa0072720:CDS 45.0%
AAATGTTGGCGCAGGTCTAT+TGG - chr1_2:45765642-45765661 Msa0072720:intron 45.0%
ACATTGCCGGTCATACTACA+TGG - chr1_2:45765914-45765933 Msa0072720:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr1_2:45765979-45765998 Msa0072710:intron 45.0%
AATGACACCATTCGAGAGAG+TGG + chr1_2:45766047-45766066 Msa0072710:intron 45.0%
ATGACACCATTCGAGAGAGT+GGG + chr1_2:45766048-45766067 Msa0072710:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_2:45766141-45766160 Msa0072720:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:45766320-45766339 Msa0072720:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:45766321-45766340 Msa0072720:intron 45.0%
CTCTGGTGCAGAAGTAAATC+TGG - chr1_2:45766488-45766507 Msa0072720:CDS 45.0%
! GGAGATGTAATGTTTGGCTC+TGG - chr1_2:45766505-45766524 Msa0072720:CDS 45.0%
GAGACGAATTCAGGAAGCAA+TGG - chr1_2:45766599-45766618 Msa0072720:CDS 45.0%
GTCCACAATGGTACATTCAC+AGG - chr1_2:45766656-45766675 Msa0072720:intron 45.0%
GGAAGCTATTGATCCTGAAG+AGG - chr1_2:45766764-45766783 Msa0072720:CDS 45.0%
GAAGAAGTAGAAGATGAGGC+TGG - chr1_2:45766826-45766845 Msa0072720:CDS 45.0%
!! ACCCTCTGCTTTAATGGGTT+CGG + chr1_2:45766855-45766874 Msa0072710:three_prime_UTR 45.0%
!! AAAAATATAAACAATTAAAA+AGG + chr1_2:45764867-45764886 Msa0072710:three_prime_UTR 5.0%
TGGTTAATGCAGTTCACGCG+TGG + chr1_2:45762104-45762123 Msa0072710:intron 50.0%
GATGGAGCTGAAGCTGTGAA+AGG + chr1_2:45762872-45762891 Msa0072710:CDS 50.0%
!! AGACAAGGAATGGGTGTTGG+AGG + chr1_2:45763117-45763136 Msa0072710:CDS 50.0%
!! AATGGGTGTTGGAGGAGGAA+CGG + chr1_2:45763125-45763144 Msa0072710:CDS 50.0%
CAGCCCTACGGATTTGATGT+AGG + chr1_2:45763367-45763386 Msa0072710:intron 50.0%
TGCTAGAGTCACTTCTCACC+TGG - chr1_2:45763459-45763478 None:intergenic 50.0%
GTTCCTCCTGAACTTGCCTA+TGG + chr1_2:45763845-45763864 Msa0072710:CDS 50.0%
CTTCCATAGGCAAGTTCAGG+AGG - chr1_2:45763851-45763870 None:intergenic 50.0%
CTGCTTCCATAGGCAAGTTC+AGG - chr1_2:45763854-45763873 None:intergenic 50.0%
CTGAACTTGCCTATGGAAGC+AGG + chr1_2:45763852-45763871 Msa0072710:CDS 50.0%
GAACTTGCCTATGGAAGCAG+GGG + chr1_2:45763854-45763873 Msa0072710:CDS 50.0%
GCATCTGAACTCATGTTGGC+AGG + chr1_2:45764333-45764352 Msa0072710:intron 50.0%
! CAAGTTGGAGGAATCAGTGG+TGG - chr1_2:45764989-45765008 None:intergenic 50.0%
CCGCTACCGCAGATAATTTC+TGG - chr1_2:45765182-45765201 None:intergenic 50.0%
! GAAATTATCTGCGGTAGCGG+TGG + chr1_2:45765182-45765201 Msa0072710:three_prime_UTR 50.0%
CCACCTCCAAAGGTTGTACA+AGG - chr1_2:45765517-45765536 Msa0072720:CDS 50.0%
! CCTTGTACAACCTTTGGAGG+TGG + chr1_2:45765514-45765533 Msa0072710:three_prime_UTR 50.0%
!! GTATGATACGGAGTGTTGGG+CGG + chr1_2:45765935-45765954 Msa0072710:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr1_2:45765999-45766018 Msa0072710:intron 50.0%
TGACACCATTCGAGAGAGTG+GGG + chr1_2:45766049-45766068 Msa0072710:intron 50.0%
! AGATCAAATGGCGGAGAGTC+AGG + chr1_2:45766164-45766183 Msa0072710:intron 50.0%
GCGGAGAGTCAGGTTAAAAG+AGG + chr1_2:45766174-45766193 Msa0072710:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_2:45766316-45766335 Msa0072720:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_2:45766322-45766341 Msa0072720:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_2:45766319-45766338 Msa0072710:intron 50.0%
AGAGCAGCAGAGACGAATTC+AGG - chr1_2:45766608-45766627 Msa0072720:CDS 50.0%
TGAAGAGGACAGAGCTCTAC+TGG - chr1_2:45766749-45766768 Msa0072720:CDS 50.0%
AGTAGAGCTCTGTCCTCTTC+AGG + chr1_2:45766748-45766767 Msa0072710:intron 50.0%
CCCGAACCCATTAAAGCAGA+GGG - chr1_2:45766859-45766878 Msa0072720:CDS 50.0%
!! CCCTCTGCTTTAATGGGTTC+GGG + chr1_2:45766856-45766875 Msa0072710:three_prime_UTR 50.0%
TCCCGAACCCATTAAAGCAG+AGG - chr1_2:45766860-45766879 Msa0072720:CDS 50.0%
AAGGATCGCGTGTCGCAGTA+CGG + chr1_2:45762891-45762910 Msa0072710:intron 55.0%
!! CAAGGAATGGGTGTTGGAGG+AGG + chr1_2:45763120-45763139 Msa0072710:CDS 55.0%
GATGTAGGCGAATCTGCGAG+AGG + chr1_2:45763382-45763401 Msa0072710:CDS 55.0%
TTGGACTCCCCTGCTTCCAT+AGG - chr1_2:45763864-45763883 None:intergenic 55.0%
CTGGTAGGGCTGCTCTTCTA+GGG - chr1_2:45764685-45764704 None:intergenic 55.0%
TCTGGTAGGGCTGCTCTTCT+AGG - chr1_2:45764686-45764705 None:intergenic 55.0%
AGAAGAGCAGCCCTACCAGA+TGG + chr1_2:45764686-45764705 Msa0072710:three_prime_UTR 55.0%
CTAGCAGCACCTCCGCAAAA+TGG + chr1_2:45765098-45765117 Msa0072710:three_prime_UTR 55.0%
CTGGCACTCTGCTCACTTTG+TGG - chr1_2:45765163-45765182 None:intergenic 55.0%
GGCATGACAAATACAGGCCC+AGG - chr1_2:45765618-45765637 Msa0072720:CDS 55.0%
TGTTGGCGCAGGTCTATTGG+TGG - chr1_2:45765639-45765658 Msa0072720:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr1_2:45765991-45766010 Msa0072710:intron 55.0%
GACACCATTCGAGAGAGTGG+GGG + chr1_2:45766050-45766069 Msa0072710:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_2:45766308-45766327 Msa0072720:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_2:45766307-45766326 Msa0072710:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_2:45766308-45766327 Msa0072710:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_2:45766314-45766333 Msa0072710:intron 55.0%
GGCGACGCAGTTCACACATG+TGG - chr1_2:45762284-45762303 None:intergenic 60.0%
! GGAGTAGAGGGCATGCGAGT+TGG + chr1_2:45763430-45763449 Msa0072710:CDS 60.0%
! GTAGAGGGCATGCGAGTTGG+AGG + chr1_2:45763433-45763452 Msa0072710:CDS 60.0%
! GTAGGGCTGCTCTTCTAGGG+CGG - chr1_2:45764682-45764701 None:intergenic 60.0%
CTTCGTATGGTGGCCCTGCA+TGG + chr1_2:45765386-45765405 Msa0072710:three_prime_UTR 60.0%
GCTACCCCCACTCTCTCGAA+TGG - chr1_2:45766057-45766076 Msa0072720:intron 60.0%
! GGGCATGCGAGTTGGAGGCC+AGG + chr1_2:45763438-45763457 Msa0072710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 45761374 45766894 45761374 ID=Msa0072710;Name=Msa0072710
chr1_2 mRNA 45761374 45766894 45761374 ID=Msa0072710-mRNA-1;Parent=Msa0072710;Name=Msa0072710-mRNA-1;_AED=0.11;_eAED=0.11;_QI=112|1|1|1|0.66|0.53|13|1266|237
chr1_2 exon 45761374 45761564 45761374 ID=Msa0072710-mRNA-1:exon:13831;Parent=Msa0072710-mRNA-1
chr1_2 exon 45761664 45761816 45761664 ID=Msa0072710-mRNA-1:exon:13832;Parent=Msa0072710-mRNA-1
chr1_2 exon 45761925 45761980 45761925 ID=Msa0072710-mRNA-1:exon:13833;Parent=Msa0072710-mRNA-1
chr1_2 exon 45762418 45762473 45762418 ID=Msa0072710-mRNA-1:exon:13834;Parent=Msa0072710-mRNA-1
chr1_2 exon 45762850 45762907 45762850 ID=Msa0072710-mRNA-1:exon:13835;Parent=Msa0072710-mRNA-1
chr1_2 exon 45763072 45763146 45763072 ID=Msa0072710-mRNA-1:exon:13836;Parent=Msa0072710-mRNA-1
chr1_2 exon 45763370 45763459 45763370 ID=Msa0072710-mRNA-1:exon:13837;Parent=Msa0072710-mRNA-1
chr1_2 exon 45763833 45763910 45763833 ID=Msa0072710-mRNA-1:exon:13838;Parent=Msa0072710-mRNA-1
chr1_2 exon 45764481 45764521 45764481 ID=Msa0072710-mRNA-1:exon:13839;Parent=Msa0072710-mRNA-1
chr1_2 exon 45764604 45765307 45764604 ID=Msa0072710-mRNA-1:exon:13840;Parent=Msa0072710-mRNA-1
chr1_2 exon 45765383 45765647 45765383 ID=Msa0072710-mRNA-1:exon:13841;Parent=Msa0072710-mRNA-1
chr1_2 exon 45766477 45766655 45766477 ID=Msa0072710-mRNA-1:exon:13842;Parent=Msa0072710-mRNA-1
chr1_2 exon 45766749 45766894 45766749 ID=Msa0072710-mRNA-1:exon:13843;Parent=Msa0072710-mRNA-1
chr1_2 five_prime_UTR 45761374 45761485 45761374 ID=Msa0072710-mRNA-1:five_prime_utr;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45761486 45761564 45761486 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45761664 45761816 45761664 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45761925 45761980 45761925 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45762418 45762473 45762418 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45762850 45762907 45762850 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45763072 45763146 45763072 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45763370 45763459 45763370 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45763833 45763910 45763833 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45764481 45764521 45764481 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 CDS 45764604 45764631 45764604 ID=Msa0072710-mRNA-1:cds;Parent=Msa0072710-mRNA-1
chr1_2 three_prime_UTR 45764632 45765307 45764632 ID=Msa0072710-mRNA-1:three_prime_utr;Parent=Msa0072710-mRNA-1
chr1_2 three_prime_UTR 45765383 45765647 45765383 ID=Msa0072710-mRNA-1:three_prime_utr;Parent=Msa0072710-mRNA-1
chr1_2 three_prime_UTR 45766477 45766655 45766477 ID=Msa0072710-mRNA-1:three_prime_utr;Parent=Msa0072710-mRNA-1
chr1_2 three_prime_UTR 45766749 45766894 45766749 ID=Msa0072710-mRNA-1:three_prime_utr;Parent=Msa0072710-mRNA-1
Gene Sequence

>Msa0072710

ATGGAACTCTCTCTTCTCAACCATCATCATCACCATCCTTCACTCCTTCATTGCACTCTCACATCCAATCTCTTCACAAGAACACACAAAAGACTTTACAACAAAAATTCAAATAGGTTAATACCATGCAGCTGTTCACATTCTTCCTCCAATAAAACTGTTGTAGAACCAATCTCTATGTCTTTACAAATTGAAGGAAGGAGAGCATTACTCACTTCTCTCCTCACAACATTTGCTGGAGTTTATGCATGTGATGTGGCTGAAGCTGTTAGCACTAGTAGAAGAGCTCTAAGAGGAGCCAAAATTCCTGAAAGTGATTTCAAAACTTTGCCCAATGGTCTCAAGTACTATGATTTGAAGGTTGGCGATGGAGCTGAAGCTGTGAAAGGATCGCGTGTCGCAATTCACTATGTTGCTAAATGGAGGGGAATCACCTTCATGACTAGTAGACAAGGAATGGGTGTTGGAGGAGGAACGCCCTACGGATTTGATGTAGGCGAATCTGCGAGAGGAAATGTCTTAAAAGGTTTGGATGTAGGAGTAGAGGGCATGCGAGTTGGAGGCCAGCGGTTGTTAATTGTTCCTCCTGAACTTGCCTATGGAAGCAGGGGAGTCCAAGAAATTCCTCCAAATGCAACAATAGAGATGGATATTGAACTGCTTGCCATCAAACAAAGTCCATTTGGGACTGCCGTAAAGATTGTTGAAGGCTAA

Protein sequence

>Msa0072710

MELSLLNHHHHHPSLLHCTLTSNLFTRTHKRLYNKNSNRLIPCSCSHSSSNKTVVEPISMSLQIEGRRALLTSLLTTFAGVYACDVAEAVSTSRRALRGAKIPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGGGTPYGFDVGESARGNVLKGLDVGVEGMRVGGQRLLIVPPELAYGSRGVQEIPPNATIEMDIELLAIKQSPFGTAVKIVEG*