Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219140 | XP_003596831.1 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219140 | sp|Q9FMR1|RGAP1_ARATH | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 1.45e-150 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219140 | G7ITU3 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0219140 | 0.840856 | 6.756542e-58 | -8.615850e-47 |
| Msa0025090 | Msa0219140 | 0.812804 | 3.525008e-51 | -8.615850e-47 |
| Msa0028450 | Msa0219140 | 0.833135 | 6.347205e-56 | -8.615850e-47 |
| Msa0030710 | Msa0219140 | 0.812259 | 4.639451e-51 | -8.615850e-47 |
| Msa0032040 | Msa0219140 | 0.828966 | 6.701919e-55 | -8.615850e-47 |
| Msa0032210 | Msa0219140 | 0.834726 | 2.537355e-56 | -8.615850e-47 |
| Msa0034800 | Msa0219140 | 0.822873 | 1.876814e-53 | -8.615850e-47 |
| Msa0040190 | Msa0219140 | 0.801885 | 7.288979e-49 | -8.615850e-47 |
| Msa0046090 | Msa0219140 | 0.809023 | 2.322061e-50 | -8.615850e-47 |
| Msa0047990 | Msa0219140 | -0.815694 | 8.106715e-52 | -8.615850e-47 |
| Msa0072590 | Msa0219140 | 0.816380 | 5.696827e-52 | -8.615850e-47 |
| Msa0072710 | Msa0219140 | 0.834101 | 3.641488e-56 | -8.615850e-47 |
| Msa0074310 | Msa0219140 | 0.815514 | 8.891124e-52 | -8.615850e-47 |
| Msa0084550 | Msa0219140 | 0.812380 | 4.364552e-51 | -8.615850e-47 |
| Msa0087880 | Msa0219140 | 0.828074 | 1.100061e-54 | -8.615850e-47 |
| Msa0089410 | Msa0219140 | 0.842007 | 3.362416e-58 | -8.615850e-47 |
| Msa0092750 | Msa0219140 | 0.834496 | 2.898254e-56 | -8.615850e-47 |
| Msa0093830 | Msa0219140 | 0.800904 | 1.158076e-48 | -8.615850e-47 |
| Msa0095550 | Msa0219140 | 0.810881 | 9.247434e-51 | -8.615850e-47 |
| Msa0114960 | Msa0219140 | 0.830551 | 2.755736e-55 | -8.615850e-47 |
| Msa0121080 | Msa0219140 | 0.800023 | 1.750376e-48 | -8.615850e-47 |
| Msa0124070 | Msa0219140 | 0.804573 | 2.024821e-49 | -8.615850e-47 |
| Msa0130620 | Msa0219140 | 0.811702 | 6.133566e-51 | -8.615850e-47 |
| Msa0136520 | Msa0219140 | 0.842748 | 2.139677e-58 | -8.615850e-47 |
| Msa0143360 | Msa0219140 | 0.839450 | 1.573490e-57 | -8.615850e-47 |
| Msa0144510 | Msa0219140 | 0.800676 | 1.288580e-48 | -8.615850e-47 |
| Msa0172530 | Msa0219140 | 0.842266 | 2.872363e-58 | -8.615850e-47 |
| Msa0172580 | Msa0219140 | 0.829223 | 5.804019e-55 | -8.615850e-47 |
| Msa0174800 | Msa0219140 | 0.821783 | 3.361005e-53 | -8.615850e-47 |
| Msa0176530 | Msa0219140 | 0.811407 | 7.108854e-51 | -8.615850e-47 |
| Msa0180480 | Msa0219140 | 0.821261 | 4.435200e-53 | -8.615850e-47 |
| Msa0186380 | Msa0219140 | 0.805738 | 1.154872e-49 | -8.615850e-47 |
| Msa0186750 | Msa0219140 | 0.815560 | 8.683836e-52 | -8.615850e-47 |
| Msa0189050 | Msa0219140 | 0.825266 | 5.147902e-54 | -8.615850e-47 |
| Msa0190400 | Msa0219140 | 0.802049 | 6.746293e-49 | -8.615850e-47 |
| Msa0206600 | Msa0219140 | 0.828200 | 1.026249e-54 | -8.615850e-47 |
| Msa0207530 | Msa0219140 | 0.802336 | 5.888521e-49 | -8.615850e-47 |
| Msa0207900 | Msa0219140 | 0.801666 | 8.085884e-49 | -8.615850e-47 |
| Msa0219140 | Msa0225050 | 0.818169 | 2.255275e-52 | -8.615850e-47 |
| Msa0219140 | Msa0231310 | 0.818823 | 1.603198e-52 | -8.615850e-47 |
| Msa0219140 | Msa0249670 | 0.819477 | 1.138116e-52 | -8.615850e-47 |
| Msa0219140 | Msa0255700 | 0.814072 | 1.855904e-51 | -8.615850e-47 |
| Msa0219140 | Msa0258960 | 0.971964 | 5.331019e-134 | -8.615850e-47 |
| Msa0219140 | Msa0259830 | 0.805549 | 1.265268e-49 | -8.615850e-47 |
| Msa0219140 | Msa0261390 | 0.818857 | 1.574920e-52 | -8.615850e-47 |
| Msa0219140 | Msa0266120 | 0.829100 | 6.216994e-55 | -8.615850e-47 |
| Msa0219140 | Msa0278080 | 0.801201 | 1.006951e-48 | -8.615850e-47 |
| Msa0219140 | Msa0296640 | 0.808157 | 3.554599e-50 | -8.615850e-47 |
| Msa0219140 | Msa0298180 | 0.934950 | 1.822902e-96 | -8.615850e-47 |
| Msa0219140 | Msa0304040 | 0.827054 | 1.933767e-54 | -8.615850e-47 |
| Msa0219140 | Msa0305810 | 0.816230 | 6.155269e-52 | -8.615850e-47 |
| Msa0219140 | Msa0307490 | 0.815081 | 1.109864e-51 | -8.615850e-47 |
| Msa0219140 | Msa0307750 | 0.808596 | 2.866199e-50 | -8.615850e-47 |
| Msa0219140 | Msa0309160 | 0.817239 | 3.655415e-52 | -8.615850e-47 |
| Msa0219140 | Msa0315820 | 0.805813 | 1.113421e-49 | -8.615850e-47 |
| Msa0219140 | Msa0319060 | 0.801886 | 7.285556e-49 | -8.615850e-47 |
| Msa0219140 | Msa0331830 | 0.831812 | 1.349852e-55 | -8.615850e-47 |
| Msa0219140 | Msa0333290 | 0.800714 | 1.266282e-48 | -8.615850e-47 |
| Msa0219140 | Msa0335990 | 0.885414 | 8.297972e-72 | -8.615850e-47 |
| Msa0219140 | Msa0341710 | 0.817183 | 3.762513e-52 | -8.615850e-47 |
| Msa0219140 | Msa0342680 | 0.827935 | 1.188544e-54 | -8.615850e-47 |
| Msa0219140 | Msa0369660 | -0.823212 | 1.564009e-53 | -8.615850e-47 |
| Msa0219140 | Msa0378570 | 0.811329 | 7.391982e-51 | -8.615850e-47 |
| Msa0219140 | Msa0384130 | 0.857175 | 1.952477e-62 | -8.615850e-47 |
| Msa0219140 | Msa0384570 | 0.810200 | 1.297173e-50 | -8.615850e-47 |
| Msa0219140 | Msa0385870 | 0.807264 | 5.501842e-50 | -8.615850e-47 |
| Msa0219140 | Msa0386390 | 0.806620 | 7.529813e-50 | -8.615850e-47 |
| Msa0219140 | Msa0387120 | 0.815639 | 8.339393e-52 | -8.615850e-47 |
| Msa0219140 | Msa0387180 | -0.803918 | 2.771727e-49 | -8.615850e-47 |
| Msa0219140 | Msa0413040 | 0.820531 | 6.529558e-53 | -8.615850e-47 |
| Msa0219140 | Msa0421100 | 0.800796 | 1.218497e-48 | -8.615850e-47 |
| Msa0219140 | Msa0427850 | -0.803446 | 3.473524e-49 | -8.615850e-47 |
| Msa0219140 | Msa0434840 | 0.822455 | 2.347101e-53 | -8.615850e-47 |
| Msa0219140 | Msa0463890 | -0.831437 | 1.670456e-55 | -8.615850e-47 |
| Msa0219140 | Msa0468050 | -0.805943 | 1.045663e-49 | -8.615850e-47 |
| Msa0219140 | Msa0471080 | 0.802575 | 5.256441e-49 | -8.615850e-47 |
| Msa0219140 | Msa0478750 | 0.856022 | 4.259227e-62 | -8.615850e-47 |
| Msa0219140 | Msa0479790 | 0.806183 | 9.309195e-50 | -8.615850e-47 |
| Msa0219140 | Msa0487960 | 0.802597 | 5.203377e-49 | -8.615850e-47 |
| Msa0219140 | Msa0499950 | 0.839652 | 1.393714e-57 | -8.615850e-47 |
| Msa0219140 | Msa0513500 | 0.816849 | 4.474072e-52 | -8.615850e-47 |
| Msa0219140 | Msa0522510 | 0.803782 | 2.958064e-49 | -8.615850e-47 |
| Msa0219140 | Msa0522830 | 0.871893 | 4.828058e-67 | -8.615850e-47 |
| Msa0219140 | Msa0523400 | 0.800685 | 1.283636e-48 | -8.615850e-47 |
| Msa0219140 | Msa0532310 | -0.808942 | 2.416915e-50 | -8.615850e-47 |
| Msa0219140 | Msa0532910 | 0.835982 | 1.221685e-56 | -8.615850e-47 |
| Msa0219140 | Msa0545910 | 0.834123 | 3.595150e-56 | -8.615850e-47 |
| Msa0219140 | Msa0553940 | 0.839556 | 1.476754e-57 | -8.615850e-47 |
| Msa0219140 | Msa0564000 | 0.803586 | 3.248221e-49 | -8.615850e-47 |
| Msa0219140 | Msa0568810 | 0.808479 | 3.034879e-50 | -8.615850e-47 |
| Msa0219140 | Msa0569290 | 0.802784 | 4.760241e-49 | -8.615850e-47 |
| Msa0219140 | Msa0570310 | 0.811853 | 5.688221e-51 | -8.615850e-47 |
| Msa0219140 | Msa0571220 | 0.805564 | 1.255998e-49 | -8.615850e-47 |
| Msa0219140 | Msa0577140 | 0.821198 | 4.585989e-53 | -8.615850e-47 |
| Msa0219140 | Msa0581190 | 0.802408 | 5.691399e-49 | -8.615850e-47 |
| Msa0219140 | Msa0583810 | 0.807943 | 3.947941e-50 | -8.615850e-47 |
| Msa0219140 | Msa0587060 | 0.857707 | 1.358249e-62 | -8.615850e-47 |
| Msa0219140 | Msa0589440 | -0.821129 | 4.757713e-53 | -8.615850e-47 |
| Msa0219140 | Msa0601710 | 0.803673 | 3.115249e-49 | -8.615850e-47 |
| Msa0219140 | Msa0608030 | 0.819953 | 8.860094e-53 | -8.615850e-47 |
| Msa0219140 | Msa0619460 | 0.823489 | 1.347397e-53 | -8.615850e-47 |
| Msa0219140 | Msa0619520 | 0.825248 | 5.200090e-54 | -8.615850e-47 |
| Msa0219140 | Msa0624890 | 0.852617 | 4.104986e-61 | -8.615850e-47 |
| Msa0219140 | Msa0626890 | 0.831434 | 1.672843e-55 | -8.615850e-47 |
| Msa0219140 | Msa0641970 | 0.819216 | 1.305026e-52 | -8.615850e-47 |
| Msa0219140 | Msa0648410 | 0.833550 | 5.001626e-56 | -8.615850e-47 |
| Msa0219140 | Msa0657820 | 0.814507 | 1.487060e-51 | -8.615850e-47 |
| Msa0219140 | Msa0659590 | 0.818041 | 2.411129e-52 | -8.615850e-47 |
| Msa0219140 | Msa0665010 | 0.847616 | 1.032974e-59 | -8.615850e-47 |
| Msa0219140 | Msa0667240 | -0.804779 | 1.833463e-49 | -8.615850e-47 |
| Msa0219140 | Msa0667710 | 0.837423 | 5.243570e-57 | -8.615850e-47 |
| Msa0219140 | Msa0677590 | 0.804092 | 2.549945e-49 | -8.615850e-47 |
| Msa0219140 | Msa0681040 | 0.831380 | 1.724977e-55 | -8.615850e-47 |
| Msa0219140 | Msa0687320 | 0.809344 | 1.982346e-50 | -8.615850e-47 |
| Msa0219140 | Msa0690920 | 0.840009 | 1.125590e-57 | -8.615850e-47 |
| Msa0219140 | Msa0704750 | 0.823786 | 1.147935e-53 | -8.615850e-47 |
| Msa0219140 | Msa0715050 | 0.811695 | 6.157088e-51 | -8.615850e-47 |
| Msa0219140 | Msa0743630 | 0.832115 | 1.136279e-55 | -8.615850e-47 |
| Msa0219140 | Msa0744070 | 0.845612 | 3.642261e-59 | -8.615850e-47 |
| Msa0219140 | Msa0747500 | -0.803262 | 3.791869e-49 | -8.615850e-47 |
| Msa0219140 | Msa0753410 | -0.823672 | 1.221129e-53 | -8.615850e-47 |
| Msa0219140 | Msa0761930 | 0.807893 | 4.046570e-50 | -8.615850e-47 |
| Msa0219140 | Msa0762390 | 0.821313 | 4.315734e-53 | -8.615850e-47 |
| Msa0219140 | Msa0762470 | 0.813374 | 2.643245e-51 | -8.615850e-47 |
| Msa0219140 | Msa0795330 | -0.826241 | 3.021768e-54 | -8.615850e-47 |
| Msa0219140 | Msa0824750 | 0.800433 | 1.444768e-48 | -8.615850e-47 |
| Msa0219140 | Msa0825300 | 0.840135 | 1.043451e-57 | -8.615850e-47 |
| Msa0219140 | Msa0854520 | 0.822737 | 2.018011e-53 | -8.615850e-47 |
| Msa0219140 | Msa0854560 | 0.842898 | 1.951484e-58 | -8.615850e-47 |
| Msa0219140 | Msa0863780 | 0.825304 | 5.043590e-54 | -8.615850e-47 |
| Msa0219140 | Msa0875130 | 0.830389 | 3.018834e-55 | -8.615850e-47 |
| Msa0219140 | Msa0880370 | 0.802588 | 5.223909e-49 | -8.615850e-47 |
| Msa0219140 | Msa0882340 | 0.850292 | 1.865766e-60 | -8.615850e-47 |
| Msa0219140 | Msa0933050 | 0.802228 | 6.196390e-49 | -8.615850e-47 |
| Msa0219140 | Msa0967920 | 0.820296 | 7.394342e-53 | -8.615850e-47 |
| Msa0219140 | Msa0974570 | 0.801907 | 7.215830e-49 | -8.615850e-47 |
| Msa0219140 | Msa0976950 | 0.832224 | 1.067839e-55 | -8.615850e-47 |
| Msa0219140 | Msa0983030 | 0.810607 | 1.059775e-50 | -8.615850e-47 |
| Msa0219140 | Msa1015020 | 0.800469 | 1.420373e-48 | -8.615850e-47 |
| Msa0219140 | Msa1030380 | -0.820236 | 7.630080e-53 | -8.615850e-47 |
| Msa0219140 | Msa1033460 | 0.802531 | 5.367612e-49 | -8.615850e-47 |
| Msa0219140 | Msa1041620 | 0.853735 | 1.962825e-61 | -8.615850e-47 |
| Msa0219140 | Msa1042380 | 0.838079 | 3.557497e-57 | -8.615850e-47 |
| Msa0219140 | Msa1069390 | -0.821153 | 4.697684e-53 | -8.615850e-47 |
| Msa0219140 | Msa1081650 | 0.863751 | 1.990915e-64 | -8.615850e-47 |
| Msa0219140 | Msa1113780 | 0.800559 | 1.361841e-48 | -8.615850e-47 |
| Msa0219140 | Msa1125100 | 0.839625 | 1.416974e-57 | -8.615850e-47 |
| Msa0219140 | Msa1125150 | 0.837834 | 4.113623e-57 | -8.615850e-47 |
| Msa0219140 | Msa1144150 | 0.800108 | 1.682560e-48 | -8.615850e-47 |
| Msa0219140 | Msa1160470 | 0.816694 | 4.845340e-52 | -8.615850e-47 |
| Msa0219140 | Msa1166020 | 0.803225 | 3.858529e-49 | -8.615850e-47 |
| Msa0219140 | Msa1166520 | 0.846166 | 2.576697e-59 | -8.615850e-47 |
| Msa0219140 | Msa1175820 | 0.807785 | 4.265659e-50 | -8.615850e-47 |
| Msa0219140 | Msa1185040 | 0.818694 | 1.715298e-52 | -8.615850e-47 |
| Msa0219140 | Msa1197210 | 0.806385 | 8.439672e-50 | -8.615850e-47 |
| Msa0219140 | Msa1199690 | 0.837414 | 5.273352e-57 | -8.615850e-47 |
| Msa0219140 | Msa1203090 | 0.805092 | 1.577527e-49 | -8.615850e-47 |
| Msa0219140 | Msa1207000 | -0.809873 | 1.525916e-50 | -8.615850e-47 |
| Msa0219140 | Msa1207090 | -0.800860 | 1.182252e-48 | -8.615850e-47 |
| Msa0219140 | Msa1209650 | 0.808046 | 3.753118e-50 | -8.615850e-47 |
| Msa0219140 | Msa1223600 | 0.806351 | 8.578872e-50 | -8.615850e-47 |
| Msa0219140 | Msa1229880 | 0.804481 | 2.115697e-49 | -8.615850e-47 |
| Msa0219140 | Msa1235960 | 0.831868 | 1.308078e-55 | -8.615850e-47 |
| Msa0219140 | Msa1235990 | 0.829823 | 4.148142e-55 | -8.615850e-47 |
| Msa0219140 | Msa1236090 | 0.805185 | 1.508487e-49 | -8.615850e-47 |
| Msa0219140 | Msa1239870 | -0.800816 | 1.207009e-48 | -8.615850e-47 |
| Msa0219140 | Msa1251890 | 0.825350 | 4.916566e-54 | -8.615850e-47 |
| Msa0219140 | Msa1251960 | 0.806164 | 9.397584e-50 | -8.615850e-47 |
| Msa0219140 | Msa1252220 | 0.862435 | 5.078361e-64 | -8.615850e-47 |
| Msa0219140 | Msa1257170 | -0.816037 | 6.798718e-52 | -8.615850e-47 |
| Msa0219140 | Msa1258600 | -0.850681 | 1.451274e-60 | -8.615850e-47 |
| Msa0219140 | Msa1267800 | 0.820422 | 6.915625e-53 | -8.615850e-47 |
| Msa0219140 | Msa1279240 | 0.843840 | 1.094053e-58 | -8.615850e-47 |
| Msa0219140 | Msa1283710 | 0.800231 | 1.587852e-48 | -8.615850e-47 |
| Msa0219140 | Msa1293030 | 0.822570 | 2.207212e-53 | -8.615850e-47 |
| Msa0219140 | Msa1295840 | 0.800309 | 1.530831e-48 | -8.615850e-47 |
| Msa0219140 | Msa1298440 | -0.827055 | 1.932501e-54 | -8.615850e-47 |
| Msa0219140 | Msa1302120 | -0.810497 | 1.119069e-50 | -8.615850e-47 |
| Msa0219140 | Msa1304980 | -0.803113 | 4.070207e-49 | -8.615850e-47 |
| Msa0219140 | Msa1316090 | 0.832557 | 8.830084e-56 | -8.615850e-47 |
| Msa0219140 | Msa1319710 | 0.826190 | 3.108291e-54 | -8.615850e-47 |
| Msa0219140 | Msa1322580 | 0.814338 | 1.621309e-51 | -8.615850e-47 |
| Msa0219140 | Msa1331900 | 0.801342 | 9.422680e-49 | -8.615850e-47 |
| Msa0219140 | Msa1357760 | 0.843930 | 1.034856e-58 | -8.615850e-47 |
| Msa0219140 | Msa1361090 | 0.811895 | 5.568641e-51 | -8.615850e-47 |
| Msa0219140 | Msa1370830 | 0.824042 | 9.999158e-54 | -8.615850e-47 |
| Msa0219140 | Msa1377170 | 0.804128 | 2.506831e-49 | -8.615850e-47 |
| Msa0219140 | Msa1385940 | 0.800292 | 1.543535e-48 | -8.615850e-47 |
| Msa0219140 | Msa1390410 | 0.820819 | 5.607991e-53 | -8.615850e-47 |
| Msa0219140 | Msa1395700 | 0.804051 | 2.600130e-49 | -8.615850e-47 |
| Msa0219140 | Msa1396310 | 0.802891 | 4.523149e-49 | -8.615850e-47 |
| Msa0219140 | Msa1397550 | 0.842662 | 2.254768e-58 | -8.615850e-47 |
| Msa0219140 | Msa1400940 | -0.855059 | 8.133666e-62 | -8.615850e-47 |
| Msa0219140 | Msa1420630 | 0.835394 | 1.721424e-56 | -8.615850e-47 |
| Msa0219140 | Msa1425110 | 0.806889 | 6.605394e-50 | -8.615850e-47 |
| Msa0219140 | Msa1425570 | 0.834714 | 2.554848e-56 | -8.615850e-47 |
| Msa0219140 | Msa1426690 | 0.801369 | 9.303645e-49 | -8.615850e-47 |
| Msa0219140 | Msa1430940 | 0.801364 | 9.325773e-49 | -8.615850e-47 |
| Msa0219140 | Msa1443430 | 0.897342 | 1.543494e-76 | -8.615850e-47 |
| Msa0219140 | Msa1449510 | 0.808569 | 2.903355e-50 | -8.615850e-47 |
| Msa0219140 | Msa1458250 | 0.825715 | 4.029696e-54 | -8.615850e-47 |
| Msa0219140 | Msa1465410 | 0.807532 | 4.828769e-50 | -8.615850e-47 |
| Msa0219140 | Msa1466170 | 0.801963 | 7.026933e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219140 | MtrunA17_Chr2g0321541 | 95.175 | 456 | 17 | 1 | 1 | 456 | 1 | 451 | 0.0 | 895 |
| Msa0219140 | MtrunA17_Chr7g0266501 | 55.263 | 418 | 163 | 6 | 52 | 456 | 71 | 477 | 1.50e-149 | 434 |
| Msa0219140 | MtrunA17_Chr4g0026251 | 72.069 | 290 | 75 | 2 | 55 | 344 | 73 | 356 | 2.28e-146 | 422 |
| Msa0219140 | MtrunA17_Chr8g0346171 | 59.880 | 334 | 116 | 4 | 47 | 380 | 79 | 394 | 2.11e-130 | 386 |
| Msa0219140 | MtrunA17_Chr1g0196181 | 74.026 | 231 | 60 | 0 | 78 | 308 | 67 | 297 | 5.71e-123 | 366 |
| Msa0219140 | MtrunA17_Chr7g0268531 | 65.251 | 259 | 85 | 1 | 55 | 308 | 32 | 290 | 3.56e-111 | 335 |
| Msa0219140 | MtrunA17_Chr5g0426461 | 75.974 | 154 | 33 | 1 | 117 | 270 | 16 | 165 | 4.01e-77 | 238 |
| Msa0219140 | MtrunA17_Chr7g0250591 | 55.251 | 219 | 91 | 3 | 117 | 335 | 14 | 225 | 9.40e-72 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219140 | AT5G22400.1 | 59.506 | 405 | 136 | 6 | 52 | 456 | 90 | 466 | 1.47e-151 | 439 |
| Msa0219140 | AT3G11490.1 | 58.192 | 354 | 109 | 4 | 25 | 347 | 19 | 364 | 1.98e-132 | 389 |
| Msa0219140 | AT2G46710.1 | 63.574 | 291 | 102 | 2 | 21 | 308 | 44 | 333 | 3.14e-125 | 372 |
| Msa0219140 | AT1G08340.1 | 69.796 | 245 | 74 | 0 | 78 | 322 | 1 | 245 | 3.68e-125 | 367 |
| Msa0219140 | AT4G03100.1 | 63.504 | 274 | 89 | 1 | 50 | 312 | 39 | 312 | 6.02e-122 | 362 |
Find 95 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAGGTTGCAAATTTCTA+AGG | 0.198022 | 2_1:-66663349 | Msa0219140:three_prime_UTR |
| TCTTGAAAATGCTTATATTA+AGG | 0.202458 | 2_1:-66663903 | Msa0219140:CDS |
| GTAAGTTTGTTTAAAGTATA+AGG | 0.221431 | 2_1:-66663365 | Msa0219140:three_prime_UTR |
| TGATAGGTTCAATGGTTTCT+TGG | 0.248536 | 2_1:-66665979 | Msa0219140:CDS |
| CCTAGCACTAGGAGGCCTTC+TGG | 0.256375 | 2_1:+66665926 | None:intergenic |
| AAAAGTGTCGGTCGAGAAAA+AGG | 0.290122 | 2_1:-66663491 | Msa0219140:CDS |
| TGTCATGGTGGCAATGAAAA+AGG | 0.303033 | 2_1:+66666277 | None:intergenic |
| GGAACTTCCTAGCGGCGTTC+TGG | 0.311234 | 2_1:-66664305 | Msa0219140:CDS |
| GATAGGTTCAATGGTTTCTT+GGG | 0.329734 | 2_1:-66665978 | Msa0219140:CDS |
| TTGTCTGGCAGGACTAATTA+AGG | 0.347959 | 2_1:-66665104 | Msa0219140:intron |
| GAAGGTTCTAAATTCAATCT+TGG | 0.352625 | 2_1:+66663841 | None:intergenic |
| CAATACAGTCTTCCTCAGTT+TGG | 0.364130 | 2_1:+66664251 | None:intergenic |
| GTATGTTCAAGAAGGGTTGC+AGG | 0.366227 | 2_1:-66665332 | Msa0219140:intron |
| CTGAAGCTGCACTCTTGGAT+TGG | 0.367227 | 2_1:-66664204 | Msa0219140:CDS |
| TGCATTAACAGAAGAATTGT+TGG | 0.374854 | 2_1:+66665364 | None:intergenic |
| ACATTGAAAGGGAAACAAAA+AGG | 0.385285 | 2_1:+66666635 | None:intergenic |
| GTTGTGTAACATGTTGTTGT+TGG | 0.390330 | 2_1:-66666611 | Msa0219140:five_prime_UTR |
| GAAGTTGAAGTTGAAGTTGA+AGG | 0.390622 | 2_1:+66666197 | None:intergenic |
| TCCTCAACTGAAAGAGAATC+TGG | 0.397060 | 2_1:-66663679 | Msa0219140:CDS |
| AGTAGTTCAAATGCTAGAAA+AGG | 0.402969 | 2_1:-66663553 | Msa0219140:CDS |
| TCATGCTGAAGCTGCACTCT+TGG | 0.410731 | 2_1:-66664209 | Msa0219140:CDS |
| GCGACATGGCGCACGTTTGT+TGG | 0.420819 | 2_1:+66666014 | None:intergenic |
| GAACAGACCTGAGTCATGTT+TGG | 0.422768 | 2_1:+66664100 | None:intergenic |
| CTAGCACTAGGAGGCCTTCT+GGG | 0.423002 | 2_1:+66665927 | None:intergenic |
| CAATGTACATCAATGTCTTC+AGG | 0.428431 | 2_1:+66665124 | None:intergenic |
| TACATCAGCCATTAGATTGA+TGG | 0.431052 | 2_1:+66664180 | None:intergenic |
| GGAGGCCTTCTGGGAAAATC+AGG | 0.439195 | 2_1:+66665936 | None:intergenic |
| GTTAGGAATCAATTGAACTT+AGG | 0.440142 | 2_1:-66665154 | Msa0219140:CDS |
| GGATTGGGCCATCAATCTAA+TGG | 0.467322 | 2_1:-66664188 | Msa0219140:CDS |
| TGAAGCTGCACTCTTGGATT+GGG | 0.473582 | 2_1:-66664203 | Msa0219140:CDS |
| AAATCAGGTTCAAACTCATC+AGG | 0.480208 | 2_1:+66665951 | None:intergenic |
| AAGTAAAATGAGGTGGAGAA+TGG | 0.481632 | 2_1:+66666246 | None:intergenic |
| ATAGTCAAGAGGAACATGTT+AGG | 0.482181 | 2_1:-66665171 | Msa0219140:CDS |
| GCGTACATCAATGCAGTGAA+TGG | 0.486250 | 2_1:+66663943 | None:intergenic |
| GCCAGATTCTCTTTCAGTTG+AGG | 0.491573 | 2_1:+66663678 | None:intergenic |
| GGACAACAACCTGTGATCAA+TGG | 0.493660 | 2_1:-66663514 | Msa0219140:CDS |
| GAATCAATTGAACTTAGGAT+TGG | 0.495739 | 2_1:-66665149 | Msa0219140:CDS |
| GTAGTTCAAATGCTAGAAAA+GGG | 0.502633 | 2_1:-66663552 | Msa0219140:CDS |
| TGTTACACAACAACATTGAA+AGG | 0.509170 | 2_1:+66666623 | None:intergenic |
| AAAAGGAAGAGTAGAGCTAA+AGG | 0.512899 | 2_1:+66666652 | None:intergenic |
| GATCAGACCGAGTCGAAGCT+TGG | 0.514597 | 2_1:-66663438 | Msa0219140:CDS |
| GGCATTTGTATGTTCAAGAA+GGG | 0.517493 | 2_1:-66665339 | Msa0219140:CDS |
| AGACATTGATGTACATTGTC+TGG | 0.518937 | 2_1:-66665119 | Msa0219140:CDS |
| AGGCATTTGTATGTTCAAGA+AGG | 0.519056 | 2_1:-66665340 | Msa0219140:CDS |
| TACTTTAAACAAACTTACAA+AGG | 0.523846 | 2_1:+66663370 | None:intergenic |
| TTCACCGCCAAGCTTCGACT+CGG | 0.526197 | 2_1:+66663431 | None:intergenic |
| GTGGGGAAGAATAACAAGTC+TGG | 0.528840 | 2_1:-66663583 | Msa0219140:CDS |
| CAAAAGTAACGTGTGCGACA+TGG | 0.530420 | 2_1:+66666000 | None:intergenic |
| TTTGTACATGTATAGGTGGA+AGG | 0.531414 | 2_1:-66665217 | Msa0219140:intron |
| AAGGACGCTACGAGAAAGAA+AGG | 0.533822 | 2_1:-66663884 | Msa0219140:CDS |
| GTTACACAACAACATTGAAA+GGG | 0.536375 | 2_1:+66666624 | None:intergenic |
| TTGTTGCCACTACTCTTGAA+AGG | 0.537642 | 2_1:+66666065 | None:intergenic |
| CAATTCTTCTGTTAATGCAA+AGG | 0.543052 | 2_1:-66665360 | Msa0219140:CDS |
| ACATGGCGCACGTTTGTTGG+AGG | 0.545851 | 2_1:+66666017 | None:intergenic |
| TTATTTCCTTTCAAGAGTAG+TGG | 0.553770 | 2_1:-66666071 | Msa0219140:CDS |
| ATAAGGTTGCAAATTTCTAA+GGG | 0.554414 | 2_1:-66663348 | Msa0219140:three_prime_UTR |
| ATTGATGTACATTGTCTGGC+AGG | 0.558765 | 2_1:-66665115 | Msa0219140:CDS |
| TTGTACATGTATAGGTGGAA+GGG | 0.562108 | 2_1:-66665216 | Msa0219140:intron |
| AAATGAGAAATAGTAAGACT+TGG | 0.562992 | 2_1:+66666410 | None:intergenic |
| CCAGAAGGCCTCCTAGTGCT+AGG | 0.566429 | 2_1:-66665926 | Msa0219140:intron |
| GAAATGACTCGAAAAGTCTA+CGG | 0.568493 | 2_1:+66663803 | None:intergenic |
| CGGTGTACATTCTCATCAGA+AGG | 0.569866 | 2_1:+66663823 | None:intergenic |
| CAACAAAGACCTTTGCAACA+TGG | 0.570037 | 2_1:-66666048 | Msa0219140:CDS |
| GGAATCAGATTTCATTACAA+TGG | 0.570601 | 2_1:+66663190 | None:intergenic |
| GACTTATGTCCATGTTGCAA+AGG | 0.574114 | 2_1:+66666039 | None:intergenic |
| TGTGTGTTAGATAGAGTGAG+TGG | 0.574728 | 2_1:+66666575 | None:intergenic |
| AATGAGTCCAGAACGCCGCT+AGG | 0.582282 | 2_1:+66664298 | None:intergenic |
| GGAAAATGTGGTTGTGAAGG+AGG | 0.586388 | 2_1:+66666131 | None:intergenic |
| TGAGAATCTAATTTGCAATG+AGG | 0.590817 | 2_1:-66663638 | Msa0219140:CDS |
| AAGAGTGCAGCTTCAGCATG+AGG | 0.593298 | 2_1:+66664211 | None:intergenic |
| CAGTTATCTTATGATTCAAG+AGG | 0.593577 | 2_1:-66665397 | Msa0219140:CDS |
| TAATGCAGACAATAGTCAAG+AGG | 0.607790 | 2_1:-66665182 | Msa0219140:CDS |
| AGTGGAAAATGTGGTTGTGA+AGG | 0.613159 | 2_1:+66666128 | None:intergenic |
| GAACGCGCGCAACATTGCCA+TGG | 0.618131 | 2_1:-66664131 | Msa0219140:CDS |
| TGCAGCAGCAGACAATGAAG+AGG | 0.625545 | 2_1:-66663767 | Msa0219140:CDS |
| AGTTAGAATGAAGAAAAGTG+TGG | 0.627548 | 2_1:+66666456 | None:intergenic |
| TATATAAGTTAAACAAACAC+AGG | 0.627876 | 2_1:+66663284 | None:intergenic |
| GTTAGAATGAAGAAAAGTGT+GGG | 0.630052 | 2_1:+66666457 | None:intergenic |
| TGGCAAGAGAATGAAGAGAG+AGG | 0.631862 | 2_1:+66666167 | None:intergenic |
| TGTGATCAATGGAAAAGTGT+CGG | 0.637614 | 2_1:-66663503 | Msa0219140:CDS |
| TGTTGCATATACCTAGCACT+AGG | 0.641672 | 2_1:+66665915 | None:intergenic |
| AGTTATCTTATGATTCAAGA+GGG | 0.643572 | 2_1:-66665396 | Msa0219140:CDS |
| TTTCCTCCGAAAAGAAACGT+GGG | 0.647448 | 2_1:-66663601 | Msa0219140:CDS |
| TGCATATACCTAGCACTAGG+AGG | 0.648465 | 2_1:+66665918 | None:intergenic |
| AAGACTGTATTGAACTAGTG+AGG | 0.648835 | 2_1:-66664240 | Msa0219140:CDS |
| GATGATGAAGTAAAATGAGG+TGG | 0.654198 | 2_1:+66666239 | None:intergenic |
| GAAGTTGAAGTTGAAGGTGT+CGG | 0.654608 | 2_1:+66666203 | None:intergenic |
| GTTGATGATGAAGTAAAATG+AGG | 0.658128 | 2_1:+66666236 | None:intergenic |
| CAGACCGAGTCGAAGCTTGG+CGG | 0.664957 | 2_1:-66663435 | Msa0219140:CDS |
| GTTTCCTCCGAAAAGAAACG+TGG | 0.672738 | 2_1:-66663602 | Msa0219140:CDS |
| AGAATGGAGAACTTCTGTCA+TGG | 0.691349 | 2_1:+66666262 | None:intergenic |
| TTCCTCCGAAAAGAAACGTG+GGG | 0.693572 | 2_1:-66663600 | Msa0219140:CDS |
| ATGGAGAACTTCTGTCATGG+TGG | 0.693833 | 2_1:+66666265 | None:intergenic |
| AGTAATGCAATGCCAAACTG+AGG | 0.695720 | 2_1:-66664263 | Msa0219140:CDS |
| TGGTTTCGGGAACTTCCTAG+CGG | 0.730728 | 2_1:-66664313 | Msa0219140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTACGTTTTTAAAA+AGG | - | chr2_1:66664931-66664950 | Msa0219140:intron | 10.0% |
| !! | TTATTAACAAAAATCAGATA+TGG | + | chr2_1:66664031-66664050 | None:intergenic | 15.0% |
| !! | ATCATAAAACTTTACATATA+GGG | + | chr2_1:66665330-66665349 | None:intergenic | 15.0% |
| !!! | TATAAAAGCATTAATGAAAA+AGG | + | chr2_1:66665464-66665483 | None:intergenic | 15.0% |
| !!! | TATTTTCTGAATTAAGAAAG+TGG | + | chr2_1:66663496-66663515 | None:intergenic | 20.0% |
| !! | GATATGGAAAAAAATAAAAC+TGG | + | chr2_1:66664015-66664034 | None:intergenic | 20.0% |
| !! | ACCATTTATATGTCATAATT+TGG | - | chr2_1:66664139-66664158 | Msa0219140:CDS | 20.0% |
| !! | TCCAAATTATGACATATAAA+TGG | + | chr2_1:66664143-66664162 | None:intergenic | 20.0% |
| !! | TCATAATTTGGATTGAATAA+GGG | - | chr2_1:66664151-66664170 | Msa0219140:CDS | 20.0% |
| !! | AAAATCAAACAAAAAAAGAG+AGG | + | chr2_1:66664386-66664405 | None:intergenic | 20.0% |
| !!! | AATATTTAGGATGGTAAATT+GGG | - | chr2_1:66665166-66665185 | Msa0219140:CDS | 20.0% |
| !! | GATCATAAAACTTTACATAT+AGG | + | chr2_1:66665331-66665350 | None:intergenic | 20.0% |
| !! | TCTTGAAAATGCTTATATTA+AGG | - | chr2_1:66665943-66665962 | Msa0219140:CDS | 20.0% |
| !! | TACTTTAAACAAACTTACAA+AGG | + | chr2_1:66666479-66666498 | None:intergenic | 20.0% |
| !!! | GTAAGTTTGTTTAAAGTATA+AGG | - | chr2_1:66666481-66666500 | Msa0219140:five_prime_UTR | 20.0% |
| !! | TATATAAGTTAAACAAACAC+AGG | + | chr2_1:66666565-66666584 | None:intergenic | 20.0% |
| !!! | TATTATTTTGTTGCGTGTTT+TGG | + | chr2_1:66663331-66663350 | None:intergenic | 25.0% |
| !! | ATCATGAAGTGAGTATTTTA+AGG | + | chr2_1:66663361-66663380 | None:intergenic | 25.0% |
| ! | AAATGAGAAATAGTAAGACT+TGG | + | chr2_1:66663439-66663458 | None:intergenic | 25.0% |
| ! | AGTAGTGTGTATATAATTCA+TGG | - | chr2_1:66664064-66664083 | Msa0219140:intron | 25.0% |
| ! | GTCATAATTTGGATTGAATA+AGG | - | chr2_1:66664150-66664169 | Msa0219140:CDS | 25.0% |
| !!! | TCAAAAGCTATCTAAGATTT+TGG | - | chr2_1:66664241-66664260 | Msa0219140:CDS | 25.0% |
| ! | GAGGAAAAAGTAAAACAAAA+AGG | + | chr2_1:66664367-66664386 | None:intergenic | 25.0% |
| ! | AGTTATCTTATGATTCAAGA+GGG | - | chr2_1:66664450-66664469 | Msa0219140:intron | 25.0% |
| ! | ACTAGTTCAATTATATTGCT+TGG | - | chr2_1:66664593-66664612 | Msa0219140:intron | 25.0% |
| ! | AGTTGAATTTGTACATGTAT+AGG | - | chr2_1:66664622-66664641 | Msa0219140:intron | 25.0% |
| !!! | ATGTTGAATAGTTTTGCTAT+AGG | - | chr2_1:66664887-66664906 | Msa0219140:intron | 25.0% |
| ! | TTTGTCTCATTTATTAGACT+TGG | + | chr2_1:66665081-66665100 | None:intergenic | 25.0% |
| !! | CAATATTTAGGATGGTAAAT+TGG | - | chr2_1:66665165-66665184 | Msa0219140:CDS | 25.0% |
| ! | ATATATCCTGTAGTTATGAA+TGG | - | chr2_1:66665195-66665214 | Msa0219140:CDS | 25.0% |
| ! | AAACTTTACATATAGGGTAA+AGG | + | chr2_1:66665324-66665343 | None:intergenic | 25.0% |
| !! | TTTTCAAAGATGAAAATGCA+TGG | + | chr2_1:66665417-66665436 | None:intergenic | 25.0% |
| !! | TGATATTCTTGTACTTTTCA+AGG | - | chr2_1:66665508-66665527 | Msa0219140:intron | 25.0% |
| ! | GCTAAACTATTATTAGTTCA+TGG | - | chr2_1:66665806-66665825 | Msa0219140:intron | 25.0% |
| !! | TTCAAGTTAATCACAGTATT+TGG | - | chr2_1:66665856-66665875 | Msa0219140:intron | 25.0% |
| ! | TATAAGGTTGCAAATTTCTA+AGG | - | chr2_1:66666497-66666516 | Msa0219140:five_prime_UTR | 25.0% |
| ! | ATAAGGTTGCAAATTTCTAA+GGG | - | chr2_1:66666498-66666517 | Msa0219140:five_prime_UTR | 25.0% |
| ACATTGAAAGGGAAACAAAA+AGG | + | chr2_1:66663214-66663233 | None:intergenic | 30.0% | |
| GTTACACAACAACATTGAAA+GGG | + | chr2_1:66663225-66663244 | None:intergenic | 30.0% | |
| TGTTACACAACAACATTGAA+AGG | + | chr2_1:66663226-66663245 | None:intergenic | 30.0% | |
| ! | GTTAGAATGAAGAAAAGTGT+GGG | + | chr2_1:66663392-66663411 | None:intergenic | 30.0% |
| AGTTAGAATGAAGAAAAGTG+TGG | + | chr2_1:66663393-66663412 | None:intergenic | 30.0% | |
| !! | GTTGATGATGAAGTAAAATG+AGG | + | chr2_1:66663613-66663632 | None:intergenic | 30.0% |
| TTATTTCCTTTCAAGAGTAG+TGG | - | chr2_1:66663775-66663794 | Msa0219140:CDS | 30.0% | |
| !!! | GTTACTTTTGATAGGTTCAA+TGG | - | chr2_1:66663859-66663878 | Msa0219140:CDS | 30.0% |
| GTGACAATGCATTACTAAAT+TGG | - | chr2_1:66664173-66664192 | Msa0219140:CDS | 30.0% | |
| ! | AACTATGCTAAGAAAAGCAT+AGG | - | chr2_1:66664279-66664298 | Msa0219140:CDS | 30.0% |
| ATGATTCGTTCGCTAATTAA+AGG | + | chr2_1:66664324-66664343 | None:intergenic | 30.0% | |
| CAGTTATCTTATGATTCAAG+AGG | - | chr2_1:66664449-66664468 | Msa0219140:intron | 30.0% | |
| TGCATTAACAGAAGAATTGT+TGG | + | chr2_1:66664485-66664504 | None:intergenic | 30.0% | |
| CAATTCTTCTGTTAATGCAA+AGG | - | chr2_1:66664486-66664505 | Msa0219140:intron | 30.0% | |
| TGAATTTGTACATGTATAGG+TGG | - | chr2_1:66664625-66664644 | Msa0219140:intron | 30.0% | |
| GTTAGGAATCAATTGAACTT+AGG | - | chr2_1:66664692-66664711 | Msa0219140:intron | 30.0% | |
| GAATCAATTGAACTTAGGAT+TGG | - | chr2_1:66664697-66664716 | Msa0219140:intron | 30.0% | |
| TGATTCATCATGTAACTGAT+TGG | - | chr2_1:66665021-66665040 | Msa0219140:intron | 30.0% | |
| !! | ACATCATTTTCAAGACACAT+TGG | - | chr2_1:66665105-66665124 | Msa0219140:CDS | 30.0% |
| TTACCATCCTAAATATTGCA+TGG | + | chr2_1:66665163-66665182 | None:intergenic | 30.0% | |
| AAATGTCCATTCATAACTAC+AGG | + | chr2_1:66665204-66665223 | None:intergenic | 30.0% | |
| AAAGGAGTTGAAGAAGTTAA+AGG | + | chr2_1:66665306-66665325 | None:intergenic | 30.0% | |
| TCTGATAGTACTTATACCTT+AGG | - | chr2_1:66665833-66665852 | Msa0219140:intron | 30.0% | |
| !! | GAAGGTTCTAAATTCAATCT+TGG | + | chr2_1:66666008-66666027 | None:intergenic | 30.0% |
| ! | TGAGAATCTAATTTGCAATG+AGG | - | chr2_1:66666208-66666227 | Msa0219140:CDS | 30.0% |
| AGTAGTTCAAATGCTAGAAA+AGG | - | chr2_1:66666293-66666312 | Msa0219140:five_prime_UTR | 30.0% | |
| GTAGTTCAAATGCTAGAAAA+GGG | - | chr2_1:66666294-66666313 | Msa0219140:five_prime_UTR | 30.0% | |
| AAAAGGAAGAGTAGAGCTAA+AGG | + | chr2_1:66663197-66663216 | None:intergenic | 35.0% | |
| GTTGTGTAACATGTTGTTGT+TGG | - | chr2_1:66663235-66663254 | Msa0219140:three_prime_UTR | 35.0% | |
| !! | TTTTGAGTATTGTGTTGAGC+TGG | + | chr2_1:66663416-66663435 | None:intergenic | 35.0% |
| AAGTAAAATGAGGTGGAGAA+TGG | + | chr2_1:66663603-66663622 | None:intergenic | 35.0% | |
| GATGATGAAGTAAAATGAGG+TGG | + | chr2_1:66663610-66663629 | None:intergenic | 35.0% | |
| GAAGTTGAAGTTGAAGTTGA+AGG | + | chr2_1:66663652-66663671 | None:intergenic | 35.0% | |
| TTGTGAAGGAGGTTGAAAAA+TGG | + | chr2_1:66663707-66663726 | None:intergenic | 35.0% | |
| AGCTCAAAAAGTGGAAAATG+TGG | + | chr2_1:66663730-66663749 | None:intergenic | 35.0% | |
| GTTACTAGTAGCTCAAAAAG+TGG | + | chr2_1:66663739-66663758 | None:intergenic | 35.0% | |
| TGATAGGTTCAATGGTTTCT+TGG | - | chr2_1:66663867-66663886 | Msa0219140:CDS | 35.0% | |
| GATAGGTTCAATGGTTTCTT+GGG | - | chr2_1:66663868-66663887 | Msa0219140:CDS | 35.0% | |
| AAATCAGGTTCAAACTCATC+AGG | + | chr2_1:66663898-66663917 | None:intergenic | 35.0% | |
| !! | ACTGGTCTCAAATTTTGACA+AGG | + | chr2_1:66663997-66664016 | None:intergenic | 35.0% |
| GCATTACTAAATTGGATGCT+TGG | - | chr2_1:66664181-66664200 | Msa0219140:CDS | 35.0% | |
| ATTCGTTCGCTAATTAAAGG+CGG | + | chr2_1:66664321-66664340 | None:intergenic | 35.0% | |
| ! | ACATGTAGTGCAACTGTTTT+TGG | - | chr2_1:66664407-66664426 | Msa0219140:intron | 35.0% |
| AGGCATTTGTATGTTCAAGA+AGG | - | chr2_1:66664506-66664525 | Msa0219140:intron | 35.0% | |
| GGCATTTGTATGTTCAAGAA+GGG | - | chr2_1:66664507-66664526 | Msa0219140:intron | 35.0% | |
| TTTGTACATGTATAGGTGGA+AGG | - | chr2_1:66664629-66664648 | Msa0219140:intron | 35.0% | |
| TTGTACATGTATAGGTGGAA+GGG | - | chr2_1:66664630-66664649 | Msa0219140:intron | 35.0% | |
| TAATGCAGACAATAGTCAAG+AGG | - | chr2_1:66664664-66664683 | Msa0219140:intron | 35.0% | |
| ATAGTCAAGAGGAACATGTT+AGG | - | chr2_1:66664675-66664694 | Msa0219140:intron | 35.0% | |
| CAATGTACATCAATGTCTTC+AGG | + | chr2_1:66664725-66664744 | None:intergenic | 35.0% | |
| AGACATTGATGTACATTGTC+TGG | - | chr2_1:66664727-66664746 | Msa0219140:intron | 35.0% | |
| GGACTAATTAAGGTATGACA+TGG | - | chr2_1:66664752-66664771 | Msa0219140:intron | 35.0% | |
| GTTTCGTGAATTGATCTGAA+TGG | - | chr2_1:66664828-66664847 | Msa0219140:intron | 35.0% | |
| TCATGTAACTGATTGGAGAA+AGG | - | chr2_1:66665028-66665047 | Msa0219140:intron | 35.0% | |
| AGCTACACCATGCAATATTT+AGG | - | chr2_1:66665153-66665172 | Msa0219140:CDS | 35.0% | |
| ACACCATGCAATATTTAGGA+TGG | - | chr2_1:66665157-66665176 | Msa0219140:CDS | 35.0% | |
| !! | TTCTTGTACTTTTCAAGGCT+TGG | - | chr2_1:66665513-66665532 | Msa0219140:intron | 35.0% |
| !! | TACTTTTCAAGGCTTGGTTT+CGG | - | chr2_1:66665519-66665538 | Msa0219140:intron | 35.0% |
| AAGACTGTATTGAACTAGTG+AGG | - | chr2_1:66665606-66665625 | Msa0219140:intron | 35.0% | |
| TACATCAGCCATTAGATTGA+TGG | + | chr2_1:66665669-66665688 | None:intergenic | 35.0% | |
| ! | CTGTGATTAACTTGAACCTA+AGG | + | chr2_1:66665852-66665871 | None:intergenic | 35.0% |
| GAAATGACTCGAAAAGTCTA+CGG | + | chr2_1:66666046-66666065 | None:intergenic | 35.0% | |
| !!! | GGAGTTTTTTTCGAGTGATT+CGG | + | chr2_1:66666150-66666169 | None:intergenic | 35.0% |
| ! | TTGTTGTCCTCTTGTCTTTT+TGG | + | chr2_1:66666321-66666340 | None:intergenic | 35.0% |
| ! | TGTGATCAATGGAAAAGTGT+CGG | - | chr2_1:66666343-66666362 | Msa0219140:five_prime_UTR | 35.0% |
| TGTGTGTTAGATAGAGTGAG+TGG | + | chr2_1:66663274-66663293 | None:intergenic | 40.0% | |
| TGTCATGGTGGCAATGAAAA+AGG | + | chr2_1:66663572-66663591 | None:intergenic | 40.0% | |
| AGAATGGAGAACTTCTGTCA+TGG | + | chr2_1:66663587-66663606 | None:intergenic | 40.0% | |
| ! | GAAGTTGAAGTTGAAGGTGT+CGG | + | chr2_1:66663646-66663665 | None:intergenic | 40.0% |
| AAGGAGGTTGAAAAATGGCA+TGG | + | chr2_1:66663702-66663721 | None:intergenic | 40.0% | |
| AGTGGAAAATGTGGTTGTGA+AGG | + | chr2_1:66663721-66663740 | None:intergenic | 40.0% | |
| TTGTTGCCACTACTCTTGAA+AGG | + | chr2_1:66663784-66663803 | None:intergenic | 40.0% | |
| CAACAAAGACCTTTGCAACA+TGG | - | chr2_1:66663798-66663817 | Msa0219140:CDS | 40.0% | |
| GACTTATGTCCATGTTGCAA+AGG | + | chr2_1:66663810-66663829 | None:intergenic | 40.0% | |
| !!! | TCGCACACGTTACTTTTGAT+AGG | - | chr2_1:66663851-66663870 | Msa0219140:CDS | 40.0% |
| ! | TTGAACCTGATTTTCCCAGA+AGG | - | chr2_1:66663905-66663924 | Msa0219140:CDS | 40.0% |
| TGTTGCATATACCTAGCACT+AGG | + | chr2_1:66663934-66663953 | None:intergenic | 40.0% | |
| ATTGATGTACATTGTCTGGC+AGG | - | chr2_1:66664731-66664750 | Msa0219140:intron | 40.0% | |
| TTGTCTGGCAGGACTAATTA+AGG | - | chr2_1:66664742-66664761 | Msa0219140:intron | 40.0% | |
| !!! | GTTCGTTTTTTCTCCTTCAC+CGG | - | chr2_1:66665265-66665284 | Msa0219140:intron | 40.0% |
| !! | ACTTTTCAAGGCTTGGTTTC+GGG | - | chr2_1:66665520-66665539 | Msa0219140:intron | 40.0% |
| AGTAATGCAATGCCAAACTG+AGG | - | chr2_1:66665583-66665602 | Msa0219140:intron | 40.0% | |
| CAATACAGTCTTCCTCAGTT+TGG | + | chr2_1:66665598-66665617 | None:intergenic | 40.0% | |
| !! | TTGGCTTTTCTGATTGCAGA+TGG | - | chr2_1:66665875-66665894 | Msa0219140:intron | 40.0% |
| TCCTCAACTGAAAGAGAATC+TGG | - | chr2_1:66666167-66666186 | Msa0219140:CDS | 40.0% | |
| TTTCCTCCGAAAAGAAACGT+GGG | - | chr2_1:66666245-66666264 | Msa0219140:CDS | 40.0% | |
| ! | TTCTTCCCCACGTTTCTTTT+CGG | + | chr2_1:66666254-66666273 | None:intergenic | 40.0% |
| AAAGGGTCCAAAAAGACAAG+AGG | - | chr2_1:66666311-66666330 | Msa0219140:five_prime_UTR | 40.0% | |
| ! | GACACTTTTCCATTGATCAC+AGG | + | chr2_1:66666344-66666363 | None:intergenic | 40.0% |
| !! | AAAAGTGTCGGTCGAGAAAA+AGG | - | chr2_1:66666355-66666374 | Msa0219140:five_prime_UTR | 40.0% |
| !! | AAAGTGTCGGTCGAGAAAAA+GGG | - | chr2_1:66666356-66666375 | Msa0219140:five_prime_UTR | 40.0% |
| ATGGAGAACTTCTGTCATGG+TGG | + | chr2_1:66663584-66663603 | None:intergenic | 45.0% | |
| TGGCAAGAGAATGAAGAGAG+AGG | + | chr2_1:66663682-66663701 | None:intergenic | 45.0% | |
| GGAAAATGTGGTTGTGAAGG+AGG | + | chr2_1:66663718-66663737 | None:intergenic | 45.0% | |
| CAAAAGTAACGTGTGCGACA+TGG | + | chr2_1:66663849-66663868 | None:intergenic | 45.0% | |
| TGCATATACCTAGCACTAGG+AGG | + | chr2_1:66663931-66663950 | None:intergenic | 45.0% | |
| GTATGTTCAAGAAGGGTTGC+AGG | - | chr2_1:66664514-66664533 | Msa0219140:intron | 45.0% | |
| AAGGACCAGTGTTCAAACTC+CGG | + | chr2_1:66665287-66665306 | None:intergenic | 45.0% | |
| TGAAGCTGCACTCTTGGATT+GGG | - | chr2_1:66665643-66665662 | Msa0219140:intron | 45.0% | |
| GGATTGGGCCATCAATCTAA+TGG | - | chr2_1:66665658-66665677 | Msa0219140:intron | 45.0% | |
| CATGTTTGGCGCAAAAACCA+TGG | + | chr2_1:66665735-66665754 | None:intergenic | 45.0% | |
| ! | TTTTGCGCCAAACATGACTC+AGG | - | chr2_1:66665739-66665758 | Msa0219140:intron | 45.0% |
| GAACAGACCTGAGTCATGTT+TGG | + | chr2_1:66665749-66665768 | None:intergenic | 45.0% | |
| GCGTACATCAATGCAGTGAA+TGG | + | chr2_1:66665906-66665925 | None:intergenic | 45.0% | |
| AAGGACGCTACGAGAAAGAA+AGG | - | chr2_1:66665962-66665981 | Msa0219140:CDS | 45.0% | |
| CGGTGTACATTCTCATCAGA+AGG | + | chr2_1:66666026-66666045 | None:intergenic | 45.0% | |
| GCCAGATTCTCTTTCAGTTG+AGG | + | chr2_1:66666171-66666190 | None:intergenic | 45.0% | |
| GTTTCCTCCGAAAAGAAACG+TGG | - | chr2_1:66666244-66666263 | Msa0219140:CDS | 45.0% | |
| TTCCTCCGAAAAGAAACGTG+GGG | - | chr2_1:66666246-66666265 | Msa0219140:CDS | 45.0% | |
| GTGGGGAAGAATAACAAGTC+TGG | - | chr2_1:66666263-66666282 | Msa0219140:CDS | 45.0% | |
| GGACAACAACCTGTGATCAA+TGG | - | chr2_1:66666332-66666351 | Msa0219140:five_prime_UTR | 45.0% | |
| !! | AAAAAAAATATAAAAAAGAA+AGG | + | chr2_1:66663531-66663550 | None:intergenic | 5.0% |
| !! | AAAATAAAAAAAAGTTTAAT+TGG | + | chr2_1:66665771-66665790 | None:intergenic | 5.0% |
| !!! | AATTAAACTTTTTTTTATTT+TGG | - | chr2_1:66665770-66665789 | Msa0219140:intron | 5.0% |
| CAGTGTTCAAACTCCGGTGA+AGG | + | chr2_1:66665281-66665300 | None:intergenic | 50.0% | |
| CTTCACCGGAGTTTGAACAC+TGG | - | chr2_1:66665279-66665298 | Msa0219140:intron | 50.0% | |
| TGGTTTCGGGAACTTCCTAG+CGG | - | chr2_1:66665533-66665552 | Msa0219140:intron | 50.0% | |
| ! | AAGAGTGCAGCTTCAGCATG+AGG | + | chr2_1:66665638-66665657 | None:intergenic | 50.0% |
| TCATGCTGAAGCTGCACTCT+TGG | - | chr2_1:66665637-66665656 | Msa0219140:intron | 50.0% | |
| CTGAAGCTGCACTCTTGGAT+TGG | - | chr2_1:66665642-66665661 | Msa0219140:intron | 50.0% | |
| TGCAGCAGCAGACAATGAAG+AGG | - | chr2_1:66666079-66666098 | Msa0219140:CDS | 50.0% | |
| ! | TTCCCCACGTTTCTTTTCGG+AGG | + | chr2_1:66666251-66666270 | None:intergenic | 50.0% |
| CGGTCGAGAAAAAGGGAATG+AGG | - | chr2_1:66666363-66666382 | Msa0219140:five_prime_UTR | 50.0% | |
| ! | ACATGGCGCACGTTTGTTGG+AGG | + | chr2_1:66663832-66663851 | None:intergenic | 55.0% |
| ! | GGAGGCCTTCTGGGAAAATC+AGG | + | chr2_1:66663913-66663932 | None:intergenic | 55.0% |
| CTAGCACTAGGAGGCCTTCT+GGG | + | chr2_1:66663922-66663941 | None:intergenic | 55.0% | |
| AATGAGTCCAGAACGCCGCT+AGG | + | chr2_1:66665551-66665570 | None:intergenic | 55.0% | |
| GATCAGACCGAGTCGAAGCT+TGG | - | chr2_1:66666408-66666427 | Msa0219140:five_prime_UTR | 55.0% | |
| TTCACCGCCAAGCTTCGACT+CGG | + | chr2_1:66666418-66666437 | None:intergenic | 55.0% | |
| GCGACATGGCGCACGTTTGT+TGG | + | chr2_1:66663835-66663854 | None:intergenic | 60.0% | |
| CCTAGCACTAGGAGGCCTTC+TGG | + | chr2_1:66663923-66663942 | None:intergenic | 60.0% | |
| CCAGAAGGCCTCCTAGTGCT+AGG | - | chr2_1:66663920-66663939 | Msa0219140:CDS | 60.0% | |
| GGAACTTCCTAGCGGCGTTC+TGG | - | chr2_1:66665541-66665560 | Msa0219140:intron | 60.0% | |
| GAACGCGCGCAACATTGCCA+TGG | - | chr2_1:66665715-66665734 | Msa0219140:intron | 60.0% | |
| CAGACCGAGTCGAAGCTTGG+CGG | - | chr2_1:66666411-66666430 | Msa0219140:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 66663192 | 66666676 | 66663192 | ID=Msa0219140;Name=Msa0219140 |
| chr2_1 | mRNA | 66663192 | 66666676 | 66663192 | ID=Msa0219140-mRNA-1;Parent=Msa0219140;Name=Msa0219140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=394|1|1|1|1|1|5|240|456 |
| chr2_1 | exon | 66663192 | 66663974 | 66663192 | ID=Msa0219140-mRNA-1:exon:18809;Parent=Msa0219140-mRNA-1 |
| chr2_1 | exon | 66664108 | 66664338 | 66664108 | ID=Msa0219140-mRNA-1:exon:18808;Parent=Msa0219140-mRNA-1 |
| chr2_1 | exon | 66665105 | 66665224 | 66665105 | ID=Msa0219140-mRNA-1:exon:18807;Parent=Msa0219140-mRNA-1 |
| chr2_1 | exon | 66665333 | 66665453 | 66665333 | ID=Msa0219140-mRNA-1:exon:18806;Parent=Msa0219140-mRNA-1 |
| chr2_1 | exon | 66665927 | 66666676 | 66665927 | ID=Msa0219140-mRNA-1:exon:18805;Parent=Msa0219140-mRNA-1 |
| chr2_1 | five_prime_UTR | 66666283 | 66666676 | 66666283 | ID=Msa0219140-mRNA-1:five_prime_utr;Parent=Msa0219140-mRNA-1 |
| chr2_1 | CDS | 66665927 | 66666282 | 66665927 | ID=Msa0219140-mRNA-1:cds;Parent=Msa0219140-mRNA-1 |
| chr2_1 | CDS | 66665333 | 66665453 | 66665333 | ID=Msa0219140-mRNA-1:cds;Parent=Msa0219140-mRNA-1 |
| chr2_1 | CDS | 66665105 | 66665224 | 66665105 | ID=Msa0219140-mRNA-1:cds;Parent=Msa0219140-mRNA-1 |
| chr2_1 | CDS | 66664108 | 66664338 | 66664108 | ID=Msa0219140-mRNA-1:cds;Parent=Msa0219140-mRNA-1 |
| chr2_1 | CDS | 66663432 | 66663974 | 66663432 | ID=Msa0219140-mRNA-1:cds;Parent=Msa0219140-mRNA-1 |
| chr2_1 | three_prime_UTR | 66663192 | 66663431 | 66663192 | ID=Msa0219140-mRNA-1:three_prime_utr;Parent=Msa0219140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
