Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151740 | XP_024626487.1 | 82.044 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151740 | A0A072U1T4 | 82.044 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 0.0 | 590 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795070 | Msa1151740 | 0.802445 | 5.590169e-49 | -8.615850e-47 |
| Msa0817460 | Msa1151740 | 0.802822 | 4.674981e-49 | -8.615850e-47 |
| Msa1004840 | Msa1151740 | 0.806408 | 8.346286e-50 | -8.615850e-47 |
| Msa1023950 | Msa1151740 | 0.826801 | 2.222879e-54 | -8.615850e-47 |
| Msa1063860 | Msa1151740 | 0.887042 | 2.019494e-72 | -8.615850e-47 |
| Msa1108070 | Msa1151740 | 0.803369 | 3.602552e-49 | -8.615850e-47 |
| Msa1151740 | Msa1368430 | 0.801953 | 7.059984e-49 | -8.615850e-47 |
| Msa1151740 | Msa1383230 | 0.804316 | 2.289959e-49 | -8.615850e-47 |
| Msa0598160 | Msa1151740 | 0.805595 | 1.237179e-49 | -8.615850e-47 |
| Msa0926470 | Msa1151740 | 0.807262 | 5.507365e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151740 | MtrunA17_Chr7g0241661 | 82.044 | 362 | 32 | 2 | 1 | 332 | 1 | 359 | 0.0 | 590 |
| Msa1151740 | MtrunA17_Chr7g0241681 | 53.719 | 363 | 132 | 4 | 1 | 328 | 2 | 363 | 7.33e-119 | 347 |
| Msa1151740 | MtrunA17_Chr7g0241711 | 39.407 | 236 | 105 | 3 | 1 | 209 | 1 | 225 | 2.62e-33 | 123 |
| Msa1151740 | MtrunA17_Chr7g0241941 | 34.091 | 176 | 81 | 2 | 69 | 209 | 9 | 184 | 6.09e-26 | 102 |
| Msa1151740 | MtrunA17_Chr7g0241701 | 63.014 | 73 | 27 | 0 | 145 | 217 | 1 | 73 | 1.28e-25 | 98.6 |
| Msa1151740 | MtrunA17_Chr7g0248041 | 28.571 | 231 | 123 | 6 | 114 | 310 | 312 | 534 | 3.08e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1151740 | AT5G04110.2 | 31.892 | 185 | 90 | 3 | 168 | 316 | 341 | 525 | 1.13e-22 | 99.0 |
| Msa1151740 | AT5G04110.1 | 31.892 | 185 | 90 | 3 | 168 | 316 | 340 | 524 | 1.14e-22 | 99.0 |
| Msa1151740 | AT5G04110.3 | 31.892 | 185 | 90 | 3 | 168 | 316 | 340 | 524 | 1.14e-22 | 99.0 |
| Msa1151740 | AT5G04110.4 | 31.515 | 165 | 77 | 3 | 168 | 296 | 340 | 504 | 5.21e-17 | 82.0 |
Find 56 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTTGATGATTCTATTA+AGG | 0.192630 | 7_4:-36586410 | Msa1151740:CDS |
| TATCCATGCTAGAGATTTAA+TGG | 0.197752 | 7_4:-36586353 | Msa1151740:CDS |
| TTCAAGCTGAAGTTCGTAAA+TGG | 0.225040 | 7_4:-36586183 | Msa1151740:CDS |
| TGAGTTCCTTCTTTGATCTT+TGG | 0.253488 | 7_4:+36586558 | None:intergenic |
| TTAACACGATTAACTAATTC+AGG | 0.268218 | 7_4:+36586106 | None:intergenic |
| GACTTTGATGATTCTATTAA+GGG | 0.305104 | 7_4:-36586409 | Msa1151740:CDS |
| ACTTACCATCATTTATGTAT+TGG | 0.365830 | 7_4:+36586632 | None:intergenic |
| CTAGGTCCAATGGGAATAAC+TGG | 0.367656 | 7_4:+36586208 | None:intergenic |
| GTCTCTATACTCATACATCT+AGG | 0.386269 | 7_4:+36585836 | None:intergenic |
| TCATCATGCTCGTCATAGAT+TGG | 0.403542 | 7_4:+36585882 | None:intergenic |
| AAGAATATGCTTTAAAATCA+TGG | 0.406708 | 7_4:-36586003 | Msa1151740:CDS |
| ATGATATAGATACGATGATA+TGG | 0.422450 | 7_4:-36589209 | Msa1151740:exon |
| GAAAGATGGTTACCCCTAGA+AGG | 0.427211 | 7_4:+36586235 | None:intergenic |
| AACTGCACCTAAGGGAGATC+TGG | 0.441097 | 7_4:+36585814 | None:intergenic |
| AGCTAGAGAATGCTTAAAAT+CGG | 0.441855 | 7_4:-36586068 | Msa1151740:CDS |
| TCAAGCTGAAGTTCGTAAAT+GGG | 0.444773 | 7_4:-36586182 | Msa1151740:CDS |
| CGAACTTCAGCTTGAAACCT+AGG | 0.456711 | 7_4:+36586190 | None:intergenic |
| AAACTTCCGACTTGAATAAC+CGG | 0.459854 | 7_4:+36586036 | None:intergenic |
| CATCATGCTCGTCATAGATT+GGG | 0.471583 | 7_4:+36585883 | None:intergenic |
| TTCACGATCAACTGCACCTA+AGG | 0.479534 | 7_4:+36585805 | None:intergenic |
| TCAAGACCAGTTATTCCCAT+TGG | 0.481448 | 7_4:-36586214 | Msa1151740:CDS |
| TCTATCATGTTCTGCACTAT+CGG | 0.487951 | 7_4:-36586527 | Msa1151740:CDS |
| GCGAGTAATCGATATTTGTA+TGG | 0.505491 | 7_4:-36586331 | Msa1151740:CDS |
| TTGCATTGTCATTTAGAGAA+GGG | 0.520249 | 7_4:+36586473 | None:intergenic |
| ATCGGTAAAGAGAAATATAG+TGG | 0.522648 | 7_4:-36586589 | Msa1151740:CDS |
| TTTAACCAATACATAAATGA+TGG | 0.525857 | 7_4:-36586637 | Msa1151740:CDS |
| TAGAATCATCAAAGTCACTT+AGG | 0.526045 | 7_4:+36586416 | None:intergenic |
| AGCTTGAAACCTAGGTCCAA+TGG | 0.530844 | 7_4:+36586198 | None:intergenic |
| TGCTTGTGAATACTTTGCCT+CGG | 0.531796 | 7_4:-36589271 | None:intergenic |
| GAATAACTGGTCTTGAAAGA+TGG | 0.533214 | 7_4:+36586221 | None:intergenic |
| GCTTGAAACCTAGGTCCAAT+GGG | 0.536651 | 7_4:+36586199 | None:intergenic |
| TTTGCATTGTCATTTAGAGA+AGG | 0.540742 | 7_4:+36586472 | None:intergenic |
| CAGTTATTCCCATTGGACCT+AGG | 0.541236 | 7_4:-36586207 | Msa1151740:CDS |
| AAAATGCCAAAGATCAAAGA+AGG | 0.541347 | 7_4:-36586564 | Msa1151740:CDS |
| TGCATTGTCATTTAGAGAAG+GGG | 0.543570 | 7_4:+36586474 | None:intergenic |
| TTAAAATCGGAGATTGATAC+CGG | 0.555035 | 7_4:-36586055 | Msa1151740:CDS |
| TTGATACCGGTTATTCAAGT+CGG | 0.555858 | 7_4:-36586042 | Msa1151740:CDS |
| TCATGTTCTGCACTATCGGA+TGG | 0.557424 | 7_4:-36586523 | Msa1151740:CDS |
| ATAGAGACCAGATCTCCCTT+AGG | 0.562925 | 7_4:-36585821 | Msa1151740:CDS |
| GATAGTGCAGAACATGATAG+AGG | 0.563241 | 7_4:+36586529 | None:intergenic |
| GAAATCAAAAGAGGAAGACA+TGG | 0.565129 | 7_4:-36586287 | Msa1151740:CDS |
| TTCAGGTCTTGTTACATCCG+AGG | 0.568745 | 7_4:+36589254 | None:intergenic |
| GAGCATAGCATGTTTCATGT+TGG | 0.569427 | 7_4:+36586150 | None:intergenic |
| TATAGCTTTCAAACCTTGTG+AGG | 0.569964 | 7_4:-36589178 | Msa1151740:CDS |
| TCTCTATACTCATACATCTA+GGG | 0.574198 | 7_4:+36585837 | None:intergenic |
| TCGCCATTAAATCTCTAGCA+TGG | 0.577892 | 7_4:+36586350 | None:intergenic |
| AATCGAGGAGAAATCAAAAG+AGG | 0.585629 | 7_4:-36586296 | Msa1151740:CDS |
| GCATTGTCATTTAGAGAAGG+GGG | 0.603152 | 7_4:+36586475 | None:intergenic |
| TGTGATGACTTCTCCTCACA+AGG | 0.606079 | 7_4:+36589165 | None:intergenic |
| TCACGATCAACTGCACCTAA+GGG | 0.610761 | 7_4:+36585806 | None:intergenic |
| GCTGAAGTTCGTAAATGGGA+TGG | 0.617058 | 7_4:-36586178 | Msa1151740:CDS |
| GCACTATCGGATGGAACACA+AGG | 0.625934 | 7_4:-36586514 | Msa1151740:CDS |
| ATGCTCGTCATAGATTGGGA+TGG | 0.629267 | 7_4:+36585887 | None:intergenic |
| TGCTTTAAAATCATGGACAG+TGG | 0.637188 | 7_4:-36585996 | Msa1151740:CDS |
| TAAAGCTATCTTGATTCACA+AGG | 0.651202 | 7_4:+36586377 | None:intergenic |
| TGGTATCGAGACATCAATCG+AGG | 0.690402 | 7_4:-36586311 | Msa1151740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATATTAAAAATAAAA+GGG | + | chr7_4:36586952-36586971 | None:intergenic | 0.0% |
| !! | TATAAAATATTAAAAATAAA+AGG | + | chr7_4:36586953-36586972 | None:intergenic | 0.0% |
| !!! | TTTTTAATTAAAAATCTATG+TGG | - | chr7_4:36586572-36586591 | Msa1151740:CDS | 10.0% |
| !!! | AATGATGATTTTTTTTTTAA+TGG | - | chr7_4:36586670-36586689 | Msa1151740:intron | 10.0% |
| !! | ATCTAAATTGAAATTATTTA+GGG | + | chr7_4:36586746-36586765 | None:intergenic | 10.0% |
| !!! | TTTATTTTTGAGAAAATTTA+TGG | - | chr7_4:36587197-36587216 | Msa1151740:intron | 10.0% |
| !! | AGAAGTAATTTAAAAAAAAA+AGG | - | chr7_4:36587329-36587348 | Msa1151740:intron | 10.0% |
| !! | TAATGTATAAATTTCATAAT+CGG | + | chr7_4:36587406-36587425 | None:intergenic | 10.0% |
| !!! | TAAAGTATAATTTTCTAAAA+AGG | - | chr7_4:36588276-36588295 | Msa1151740:intron | 10.0% |
| !! | CATTATGTAAGTATTATTTA+TGG | - | chr7_4:36586047-36586066 | Msa1151740:CDS | 15.0% |
| !!! | AGTCTTTTAAATCATAAAAT+GGG | - | chr7_4:36586170-36586189 | Msa1151740:CDS | 15.0% |
| !!! | AAAGATGTAATTTTAACTAA+AGG | + | chr7_4:36586290-36586309 | None:intergenic | 15.0% |
| !! | CTCTAAATTGAAATTATTTA+GGG | + | chr7_4:36586515-36586534 | None:intergenic | 15.0% |
| !! | ATATTAGACAAAATACATTA+TGG | + | chr7_4:36586623-36586642 | None:intergenic | 15.0% |
| !! | CATCTAAATTGAAATTATTT+AGG | + | chr7_4:36586747-36586766 | None:intergenic | 15.0% |
| !!! | CAATTTAGATGTTTTTATTT+TGG | - | chr7_4:36586756-36586775 | Msa1151740:intron | 15.0% |
| !! | CATAATATACTTACTAATTA+TGG | + | chr7_4:36586820-36586839 | None:intergenic | 15.0% |
| !!! | GAATTTTTTTTTAACACATT+TGG | - | chr7_4:36587062-36587081 | Msa1151740:intron | 15.0% |
| !! | AATTTAAAAAAAAAAGGTGA+AGG | - | chr7_4:36587335-36587354 | Msa1151740:intron | 15.0% |
| !! | ATTTAAAAAAAAAAGGTGAA+GGG | - | chr7_4:36587336-36587355 | Msa1151740:intron | 15.0% |
| !! | AGTTTAACATAATCATATAA+TGG | - | chr7_4:36587557-36587576 | Msa1151740:intron | 15.0% |
| !! | TTATAAAAACAAACAACTTA+TGG | + | chr7_4:36587790-36587809 | None:intergenic | 15.0% |
| !!! | TATAATTTTCTAAAAAGGTA+AGG | - | chr7_4:36588281-36588300 | Msa1151740:intron | 15.0% |
| !!! | AGAAAATAATTTTGATTCTT+AGG | + | chr7_4:36588367-36588386 | None:intergenic | 15.0% |
| !!! | CAGTCTTTTAAATCATAAAA+TGG | - | chr7_4:36586169-36586188 | Msa1151740:CDS | 20.0% |
| !! | GAAACTTAAAAACAAAGTAA+CGG | + | chr7_4:36586200-36586219 | None:intergenic | 20.0% |
| !!! | TAAAGTTGATGTGTATATAA+CGG | - | chr7_4:36586239-36586258 | Msa1151740:CDS | 20.0% |
| !!! | ATTTTAATGGTTCAATTTCT+TGG | - | chr7_4:36586456-36586475 | Msa1151740:CDS | 20.0% |
| !! | CCTCTAAATTGAAATTATTT+AGG | + | chr7_4:36586516-36586535 | None:intergenic | 20.0% |
| !! | CCTAAATAATTTCAATTTAG+AGG | - | chr7_4:36586513-36586532 | Msa1151740:CDS | 20.0% |
| !!! | TAAGCAATTTTTGATAGAAA+TGG | - | chr7_4:36587037-36587056 | Msa1151740:intron | 20.0% |
| !! | AAATTTACTAGTATTCCTTT+AGG | + | chr7_4:36587155-36587174 | None:intergenic | 20.0% |
| !!! | ATTCAAATTTCTCTAAAAAG+TGG | + | chr7_4:36587265-36587284 | None:intergenic | 20.0% |
| !! | TATAGAATTGAACATTAGAA+GGG | + | chr7_4:36587299-36587318 | None:intergenic | 20.0% |
| !! | TTTAAAAAAAAAAGGTGAAG+GGG | - | chr7_4:36587337-36587356 | Msa1151740:intron | 20.0% |
| !!! | AGTAAAATTCTTCTAAAATG+AGG | + | chr7_4:36587601-36587620 | None:intergenic | 20.0% |
| !! | AATAAATACGTCAATTCAAA+CGG | - | chr7_4:36587879-36587898 | Msa1151740:intron | 20.0% |
| !! | AAAAATATAGTTACGCTTTA+TGG | + | chr7_4:36587906-36587925 | None:intergenic | 20.0% |
| !!! | AAAGCGTAACTATATTTTTA+AGG | - | chr7_4:36587907-36587926 | Msa1151740:intron | 20.0% |
| !!! | AAGCGTAACTATATTTTTAA+GGG | - | chr7_4:36587908-36587927 | Msa1151740:intron | 20.0% |
| !!! | GAATGTAGTTTTAATATCAT+TGG | - | chr7_4:36587935-36587954 | Msa1151740:intron | 20.0% |
| !!! | AACTTTTGAAATGATTTCAA+AGG | + | chr7_4:36588175-36588194 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGTATATCAGAAG+AGG | - | chr7_4:36588391-36588410 | Msa1151740:intron | 20.0% |
| !! | TTTAACCAATACATAAATGA+TGG | - | chr7_4:36588417-36588436 | Msa1151740:intron | 20.0% |
| !!! | AAGAATATGCTTTAAAATCA+TGG | - | chr7_4:36589051-36589070 | Msa1151740:intron | 20.0% |
| !! | AGACCTGAAAAATATGTTTT+AGG | - | chr7_4:36585814-36585833 | Msa1151740:CDS | 25.0% |
| !! | GACCTGAAAAATATGTTTTA+GGG | - | chr7_4:36585815-36585834 | Msa1151740:CDS | 25.0% |
| !! | AACCCTAAAACATATTTTTC+AGG | + | chr7_4:36585820-36585839 | None:intergenic | 25.0% |
| ! | ATGATATAGATACGATGATA+TGG | - | chr7_4:36585845-36585864 | Msa1151740:CDS | 25.0% |
| ! | AAATAATGTATACATACCTG+TGG | + | chr7_4:36585976-36585995 | None:intergenic | 25.0% |
| ! | GGTGTCTCAATTTATTTAAA+AGG | - | chr7_4:36586068-36586087 | Msa1151740:CDS | 25.0% |
| ! | GATATAACAAATACATCATG+CGG | - | chr7_4:36586090-36586109 | Msa1151740:CDS | 25.0% |
| ! | ACCTCAAATAAAAATTGACT+AGG | - | chr7_4:36586335-36586354 | Msa1151740:CDS | 25.0% |
| ! | CCTCAAATAAAAATTGACTA+GGG | - | chr7_4:36586336-36586355 | Msa1151740:CDS | 25.0% |
| ! | GTCTAATATGATGAATTCAA+TGG | - | chr7_4:36586414-36586433 | Msa1151740:CDS | 25.0% |
| !! | GATTGGAATGATGATTTTAA+TGG | - | chr7_4:36586443-36586462 | Msa1151740:CDS | 25.0% |
| ! | TTGACATATGAGCATAAAAA+AGG | - | chr7_4:36586597-36586616 | Msa1151740:CDS | 25.0% |
| ! | GTCTAATATGATGATTTCAA+TGG | - | chr7_4:36586634-36586653 | Msa1151740:CDS | 25.0% |
| ! | GTATAGAATTGAACATTAGA+AGG | + | chr7_4:36587300-36587319 | None:intergenic | 25.0% |
| ! | CATAATTACTTCTCAAGATA+AGG | + | chr7_4:36587465-36587484 | None:intergenic | 25.0% |
| !!! | GTAACTATATTTTTAAGGGA+GGG | - | chr7_4:36587912-36587931 | Msa1151740:intron | 25.0% |
| !!! | TAACTATATTTTTAAGGGAG+GGG | - | chr7_4:36587913-36587932 | Msa1151740:intron | 25.0% |
| !!! | TAGTTTTAATATCATTGGAG+AGG | - | chr7_4:36587940-36587959 | Msa1151740:intron | 25.0% |
| !! | AAGAATGAATATTTTGTCCA+TGG | - | chr7_4:36588035-36588054 | Msa1151740:intron | 25.0% |
| !! | AGAATGAATATTTTGTCCAT+GGG | - | chr7_4:36588036-36588055 | Msa1151740:intron | 25.0% |
| !! | TTATGTCTCTAAAAGTTACA+AGG | + | chr7_4:36588088-36588107 | None:intergenic | 25.0% |
| ! | TCTCAAAGACAATTGTAAAA+TGG | - | chr7_4:36588117-36588136 | Msa1151740:intron | 25.0% |
| !!! | GGTCGTTAATTTTATTTACA+AGG | - | chr7_4:36588138-36588157 | Msa1151740:intron | 25.0% |
| ! | TTGAAATGATTTCAAAGGTA+AGG | + | chr7_4:36588170-36588189 | None:intergenic | 25.0% |
| !! | AAAAGGTAAGGATTAACTTT+TGG | - | chr7_4:36588293-36588312 | Msa1151740:intron | 25.0% |
| ! | ACTTACCATCATTTATGTAT+TGG | + | chr7_4:36588425-36588444 | None:intergenic | 25.0% |
| !! | TGACTTTGATGATTCTATTA+AGG | - | chr7_4:36588644-36588663 | Msa1151740:intron | 25.0% |
| !! | GACTTTGATGATTCTATTAA+GGG | - | chr7_4:36588645-36588664 | Msa1151740:intron | 25.0% |
| ! | TTAACACGATTAACTAATTC+AGG | + | chr7_4:36588951-36588970 | None:intergenic | 25.0% |
| ! | TATACATACCTGTGGATTTT+TGG | + | chr7_4:36585968-36585987 | None:intergenic | 30.0% |
| ACATAATGTATACATACCTG+TGG | + | chr7_4:36586035-36586054 | None:intergenic | 30.0% | |
| !! | CCCTAGTCAATTTTTATTTG+AGG | + | chr7_4:36586339-36586358 | None:intergenic | 30.0% |
| TAATGGTTCAATTTCTTGGT+CGG | - | chr7_4:36586460-36586479 | Msa1151740:CDS | 30.0% | |
| AATGCATGTAATCAATGTCT+TGG | - | chr7_4:36586842-36586861 | Msa1151740:intron | 30.0% | |
| ! | TTTTGATGCTCATAGTCATA+TGG | + | chr7_4:36587009-36587028 | None:intergenic | 30.0% |
| AAAAGACCGCAAAATGTATT+TGG | - | chr7_4:36587129-36587148 | Msa1151740:intron | 30.0% | |
| ! | TTTAGGCCAAATACATTTTG+CGG | + | chr7_4:36587138-36587157 | None:intergenic | 30.0% |
| TTTCTCTCAAGCATCTTTAA+AGG | + | chr7_4:36587509-36587528 | None:intergenic | 30.0% | |
| TATTATCCATAAGCTTGTCA+AGG | + | chr7_4:36587817-36587836 | None:intergenic | 30.0% | |
| !! | CGTAACTATATTTTTAAGGG+AGG | - | chr7_4:36587911-36587930 | Msa1151740:intron | 30.0% |
| ! | GAATGAATATTTTGTCCATG+GGG | - | chr7_4:36588037-36588056 | Msa1151740:intron | 30.0% |
| ACCAATTGAGATGATTTCAA+AGG | - | chr7_4:36588211-36588230 | Msa1151740:intron | 30.0% | |
| !! | ACCTTTGAAATCATCTCAAT+TGG | + | chr7_4:36588215-36588234 | None:intergenic | 30.0% |
| TTGAGATGATTTCAAAGGTA+AGG | - | chr7_4:36588216-36588235 | Msa1151740:intron | 30.0% | |
| !!! | GCTATTAGTTTTGAACTCAT+CGG | - | chr7_4:36588447-36588466 | Msa1151740:intron | 30.0% |
| ATCGGTAAAGAGAAATATAG+TGG | - | chr7_4:36588465-36588484 | Msa1151740:intron | 30.0% | |
| AAAATGCCAAAGATCAAAGA+AGG | - | chr7_4:36588490-36588509 | Msa1151740:intron | 30.0% | |
| ! | TTGCATTGTCATTTAGAGAA+GGG | + | chr7_4:36588584-36588603 | None:intergenic | 30.0% |
| ! | TTTGCATTGTCATTTAGAGA+AGG | + | chr7_4:36588585-36588604 | None:intergenic | 30.0% |
| ! | AATGACAATGCAAAGTTTTG+TGG | - | chr7_4:36588591-36588610 | Msa1151740:intron | 30.0% |
| TAGAATCATCAAAGTCACTT+AGG | + | chr7_4:36588641-36588660 | None:intergenic | 30.0% | |
| TAAAGCTATCTTGATTCACA+AGG | + | chr7_4:36588680-36588699 | None:intergenic | 30.0% | |
| TATCCATGCTAGAGATTTAA+TGG | - | chr7_4:36588701-36588720 | Msa1151740:intron | 30.0% | |
| ! | TCAAGAACTTTTTACCTTCT+AGG | - | chr7_4:36588805-36588824 | Msa1151740:intron | 30.0% |
| ! | CAAGAACTTTTTACCTTCTA+GGG | - | chr7_4:36588806-36588825 | Msa1151740:intron | 30.0% |
| ! | AAGAACTTTTTACCTTCTAG+GGG | - | chr7_4:36588807-36588826 | Msa1151740:intron | 30.0% |
| AATCGTGTTAAAAAACGCAT+TGG | - | chr7_4:36588960-36588979 | Msa1151740:intron | 30.0% | |
| AGCTAGAGAATGCTTAAAAT+CGG | - | chr7_4:36588986-36589005 | Msa1151740:intron | 30.0% | |
| TTAAAATCGGAGATTGATAC+CGG | - | chr7_4:36588999-36589018 | Msa1151740:intron | 30.0% | |
| TCTCTATACTCATACATCTA+GGG | + | chr7_4:36589220-36589239 | None:intergenic | 30.0% | |
| TATAGCTTTCAAACCTTGTG+AGG | - | chr7_4:36585876-36585895 | Msa1151740:CDS | 35.0% | |
| !! | TTCTAGTTCCAAAAATCCAC+AGG | - | chr7_4:36585957-36585976 | Msa1151740:CDS | 35.0% |
| !! | TTCTAGTTCTAAACATCCAC+AGG | - | chr7_4:36586016-36586035 | Msa1151740:CDS | 35.0% |
| CAGAAGAAGGTTAAAGAAGA+AGG | + | chr7_4:36586365-36586384 | None:intergenic | 35.0% | |
| ACTACGAAAGTTTCAGAAGA+AGG | + | chr7_4:36586378-36586397 | None:intergenic | 35.0% | |
| GAATTCAATGGATCGTAGAT+TGG | - | chr7_4:36586426-36586445 | Msa1151740:CDS | 35.0% | |
| GCAAAATGTATTTGGCCTAA+AGG | - | chr7_4:36587137-36587156 | Msa1151740:intron | 35.0% | |
| AAGATAAGGTGATAGCTCAA+TGG | + | chr7_4:36587451-36587470 | None:intergenic | 35.0% | |
| AAGATACCTTGACAAGCTTA+TGG | - | chr7_4:36587808-36587827 | Msa1151740:intron | 35.0% | |
| TGAGTTCCTTCTTTGATCTT+TGG | + | chr7_4:36588499-36588518 | None:intergenic | 35.0% | |
| TCTATCATGTTCTGCACTAT+CGG | - | chr7_4:36588527-36588546 | Msa1151740:intron | 35.0% | |
| ! | TGCATTGTCATTTAGAGAAG+GGG | + | chr7_4:36588583-36588602 | None:intergenic | 35.0% |
| GCGAGTAATCGATATTTGTA+TGG | - | chr7_4:36588723-36588742 | Msa1151740:intron | 35.0% | |
| AATCGAGGAGAAATCAAAAG+AGG | - | chr7_4:36588758-36588777 | Msa1151740:intron | 35.0% | |
| GAAATCAAAAGAGGAAGACA+TGG | - | chr7_4:36588767-36588786 | Msa1151740:intron | 35.0% | |
| !! | GAATAACTGGTCTTGAAAGA+TGG | + | chr7_4:36588836-36588855 | None:intergenic | 35.0% |
| TTCAAGCTGAAGTTCGTAAA+TGG | - | chr7_4:36588871-36588890 | Msa1151740:intron | 35.0% | |
| TCAAGCTGAAGTTCGTAAAT+GGG | - | chr7_4:36588872-36588891 | Msa1151740:intron | 35.0% | |
| ! | TTGATACCGGTTATTCAAGT+CGG | - | chr7_4:36589012-36589031 | Msa1151740:intron | 35.0% |
| ! | AAACTTCCGACTTGAATAAC+CGG | + | chr7_4:36589021-36589040 | None:intergenic | 35.0% |
| !! | TGCTTTAAAATCATGGACAG+TGG | - | chr7_4:36589058-36589077 | Msa1151740:intron | 35.0% |
| ! | AAAATTTTCGAAGCTCGTCA+TGG | - | chr7_4:36589136-36589155 | Msa1151740:CDS | 35.0% |
| GTCTCTATACTCATACATCT+AGG | + | chr7_4:36589221-36589240 | None:intergenic | 35.0% | |
| !! | AGATAGCTTAAAGAGTGCTC+CGG | - | chr7_4:36586908-36586927 | Msa1151740:intron | 40.0% |
| ATCGGCTGTGAAACATTCAT+CGG | + | chr7_4:36587388-36587407 | None:intergenic | 40.0% | |
| ! | CTCTCAAGCATCTTTAAAGG+AGG | + | chr7_4:36587506-36587525 | None:intergenic | 40.0% |
| GATAGTGCAGAACATGATAG+AGG | + | chr7_4:36588528-36588547 | None:intergenic | 40.0% | |
| ! | GCATTGTCATTTAGAGAAGG+GGG | + | chr7_4:36588582-36588601 | None:intergenic | 40.0% |
| TCGCCATTAAATCTCTAGCA+TGG | + | chr7_4:36588707-36588726 | None:intergenic | 40.0% | |
| TCAAGACCAGTTATTCCCAT+TGG | - | chr7_4:36588840-36588859 | Msa1151740:intron | 40.0% | |
| GAGCATAGCATGTTTCATGT+TGG | + | chr7_4:36588907-36588926 | None:intergenic | 40.0% | |
| CATCATGCTCGTCATAGATT+GGG | + | chr7_4:36589174-36589193 | None:intergenic | 40.0% | |
| TCATCATGCTCGTCATAGAT+TGG | + | chr7_4:36589175-36589194 | None:intergenic | 40.0% | |
| !! | TTCAGGTCTTGTTACATCCG+AGG | + | chr7_4:36585803-36585822 | None:intergenic | 45.0% |
| TGTGATGACTTCTCCTCACA+AGG | + | chr7_4:36585892-36585911 | None:intergenic | 45.0% | |
| AAAATGTTAACGAGTGCCCC+TGG | - | chr7_4:36586779-36586798 | Msa1151740:intron | 45.0% | |
| AAATGTTAACGAGTGCCCCT+GGG | - | chr7_4:36586780-36586799 | Msa1151740:intron | 45.0% | |
| !! | GATAGCTTAAAGAGTGCTCC+GGG | - | chr7_4:36586909-36586928 | Msa1151740:intron | 45.0% |
| !! | ATAGCTTAAAGAGTGCTCCG+GGG | - | chr7_4:36586910-36586929 | Msa1151740:intron | 45.0% |
| ! | TCCATGGGGTGCAAATTTTG+CGG | - | chr7_4:36588051-36588070 | Msa1151740:intron | 45.0% |
| TCATGTTCTGCACTATCGGA+TGG | - | chr7_4:36588531-36588550 | Msa1151740:intron | 45.0% | |
| ! | TGGTATCGAGACATCAATCG+AGG | - | chr7_4:36588743-36588762 | Msa1151740:intron | 45.0% |
| GAAAGATGGTTACCCCTAGA+AGG | + | chr7_4:36588822-36588841 | None:intergenic | 45.0% | |
| CTAGGTCCAATGGGAATAAC+TGG | + | chr7_4:36588849-36588868 | None:intergenic | 45.0% | |
| CAGTTATTCCCATTGGACCT+AGG | - | chr7_4:36588847-36588866 | Msa1151740:intron | 45.0% | |
| GCTTGAAACCTAGGTCCAAT+GGG | + | chr7_4:36588858-36588877 | None:intergenic | 45.0% | |
| AGCTTGAAACCTAGGTCCAA+TGG | + | chr7_4:36588859-36588878 | None:intergenic | 45.0% | |
| CGAACTTCAGCTTGAAACCT+AGG | + | chr7_4:36588867-36588886 | None:intergenic | 45.0% | |
| GCTGAAGTTCGTAAATGGGA+TGG | - | chr7_4:36588876-36588895 | Msa1151740:intron | 45.0% | |
| ATGCTCGTCATAGATTGGGA+TGG | + | chr7_4:36589170-36589189 | None:intergenic | 45.0% | |
| ATAGAGACCAGATCTCCCTT+AGG | - | chr7_4:36589233-36589252 | Msa1151740:five_prime_UTR | 45.0% | |
| TCACGATCAACTGCACCTAA+GGG | + | chr7_4:36589251-36589270 | None:intergenic | 45.0% | |
| TTCACGATCAACTGCACCTA+AGG | + | chr7_4:36589252-36589271 | None:intergenic | 45.0% | |
| !! | TTTGATAAAAAAAATATTAA+AGG | + | chr7_4:36586148-36586167 | None:intergenic | 5.0% |
| AATGTTAACGAGTGCCCCTG+GGG | - | chr7_4:36586781-36586800 | Msa1151740:intron | 50.0% | |
| ! | GTCTTGTTAACGAGTGTCCC+CGG | + | chr7_4:36586930-36586949 | None:intergenic | 50.0% |
| ACCGCAAAATTTGCACCCCA+TGG | + | chr7_4:36588055-36588074 | None:intergenic | 50.0% | |
| GCACTATCGGATGGAACACA+AGG | - | chr7_4:36588540-36588559 | Msa1151740:intron | 50.0% | |
| AACTGCACCTAAGGGAGATC+TGG | + | chr7_4:36589243-36589262 | None:intergenic | 50.0% | |
| !! | GTCCTTAAAGAGTGCCCCAG+GGG | + | chr7_4:36586798-36586817 | None:intergenic | 55.0% |
| !! | GGTCCTTAAAGAGTGCCCCA+GGG | + | chr7_4:36586799-36586818 | None:intergenic | 55.0% |
| !! | TGGTCCTTAAAGAGTGCCCC+AGG | + | chr7_4:36586800-36586819 | None:intergenic | 55.0% |
| ! | TGCCCCTGGGGCACTCTTTA+AGG | - | chr7_4:36586793-36586812 | Msa1151740:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 36585793 | 36589283 | 36585793 | ID=Msa1151740;Name=Msa1151740 |
| chr7_4 | mRNA | 36585793 | 36589283 | 36585793 | ID=Msa1151740-mRNA-1;Parent=Msa1151740;Name=Msa1151740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=66|1|0.5|1|1|0.5|2|0|332 |
| chr7_4 | exon | 36585793 | 36586668 | 36585793 | ID=Msa1151740-mRNA-1:exon:8635;Parent=Msa1151740-mRNA-1 |
| chr7_4 | exon | 36589098 | 36589283 | 36589098 | ID=Msa1151740-mRNA-1:exon:8634;Parent=Msa1151740-mRNA-1 |
| chr7_4 | five_prime_UTR | 36589218 | 36589283 | 36589218 | ID=Msa1151740-mRNA-1:five_prime_utr;Parent=Msa1151740-mRNA-1 |
| chr7_4 | CDS | 36589098 | 36589217 | 36589098 | ID=Msa1151740-mRNA-1:cds;Parent=Msa1151740-mRNA-1 |
| chr7_4 | CDS | 36585793 | 36586668 | 36585793 | ID=Msa1151740-mRNA-1:cds;Parent=Msa1151740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
