AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004840 MtrunA17_Chr7g0214901 87.482 695 34 4 2 643 1633 2327 0.0 1149
Msa1004840 MtrunA17_Chr7g0214901 53.043 230 66 5 449 643 2201 2423 3.27e-45 174
Msa1004840 MtrunA17_Chr7g0214901 57.927 164 58 3 437 593 2289 2448 1.02e-37 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004840 AT1G67140.3 37.130 439 208 8 16 389 1625 2060 6.60e-70 248
Msa1004840 AT1G67140.1 37.130 439 208 8 16 389 1624 2059 6.66e-70 248
Msa1004840 AT1G67140.2 37.045 440 208 8 16 389 1624 2060 8.83e-70 248

Find 163 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCCAGAACCATCGATTT+TGG 0.188857 7_1:-2504706 None:intergenic
AAACTATAGCTATGAAAATT+TGG 0.230159 7_1:-2508456 None:intergenic
TGTTGACAGGTCCAAGTTAT+AGG 0.260425 7_1:+2505556 Msa1004840:intron
GAAACACCTCGTTGAAGTTC+TGG 0.299757 7_1:-2508134 None:intergenic
CATTGAGGAATTCCATTTGC+AGG 0.300407 7_1:+2505265 Msa1004840:CDS
GGTTGAAAGCTCATCAGATT+TGG 0.324731 7_1:+2507040 Msa1004840:CDS
TCTTGATGTTTGCTTTCTAC+TGG 0.329362 7_1:-2507701 None:intergenic
AATAAAACTAGATCATTTAC+TGG 0.334415 7_1:-2507530 None:intergenic
ATCACATCAACTTCAGAGTT+TGG 0.336996 7_1:-2504460 None:intergenic
CTTTCAGACGTTCCTCGCTT+AGG 0.337373 7_1:-2507677 None:intergenic
GTTTCAAACATTTCTCTTAG+AGG 0.343317 7_1:-2505206 None:intergenic
TTGAATCACTGAATACAGTT+TGG 0.347543 7_1:-2505454 None:intergenic
GTTGCTGCTTTGACTAAGTA+TGG 0.353057 7_1:+2505242 Msa1004840:CDS
AAGGCGAGAAACAAGCTTAA+TGG 0.356055 7_1:-2506150 None:intergenic
AATTATAGTAGTCGCGAAAC+TGG 0.359454 7_1:+2505349 Msa1004840:CDS
GAAACAACCTGCTGAGGTTC+CGG 0.364871 7_1:-2507626 None:intergenic
GAGGAAGAATTGCGAAGCTC+TGG 0.367062 7_1:+2507482 Msa1004840:CDS
GAATTTGAAACTAGCTGTTC+AGG 0.369344 7_1:-2507602 None:intergenic
AGAACAGAAAGTACCAGTTT+TGG 0.369667 7_1:+2506812 Msa1004840:CDS
ATGAATTCAGTGAAGAAGAT+TGG 0.370010 7_1:+2506928 Msa1004840:CDS
TCCTGATGTTCCCTTTCTAC+TGG 0.370765 7_1:-2507455 None:intergenic
TCTGCACCGCCAGGAACTTC+AGG 0.375739 7_1:+2506229 Msa1004840:CDS
TCTTCATGTTTACTTCCTAC+TGG 0.380368 7_1:-2507966 None:intergenic
TCATTTCTTACCGCTGGCTT+TGG 0.380591 7_1:-2506846 None:intergenic
GGCAGTCATTACCCTTAGCC+AGG 0.387439 7_1:-2505894 None:intergenic
TTCATCAGCCATGCATTTCA+AGG 0.390960 7_1:+2506184 Msa1004840:CDS
TTTCAGACGTTCCTCGCTTA+GGG 0.394744 7_1:-2507676 None:intergenic
AAGAACACCTGTTGAAGTTT+CGG 0.398850 7_1:-2507850 None:intergenic
TCCAGTAGAAAGGGAACATC+AGG 0.400146 7_1:+2507454 Msa1004840:CDS
AACTCTTAACCTCCTGCAAA+TGG 0.400401 7_1:-2505277 None:intergenic
TAGTTGGCTACAAGTGTGTA+AGG 0.403907 7_1:+2504734 Msa1004840:CDS
TTGCGAAGCTCTGGGCTTCA+AGG 0.406531 7_1:+2507491 Msa1004840:CDS
TTCTCTTCATTTCTTACCGC+TGG 0.410310 7_1:-2506852 None:intergenic
GCATCCAAAATCGATGGTTC+TGG 0.418224 7_1:+2504702 Msa1004840:CDS
CAGCAACAAATTACGAATAG+AGG 0.419434 7_1:-2508491 None:intergenic
GATCATTGTGATCAGAAGCC+TGG 0.422021 7_1:+2508054 Msa1004840:three_prime_UTR
GTGCAGTACTAACACGATTC+CGG 0.431256 7_1:+2504429 Msa1004840:intron
TCAGATTTGGAAGGTTCTAC+TGG 0.432557 7_1:+2507053 Msa1004840:CDS
ATTTACACCTCTTTGAATCC+TGG 0.437531 7_1:-2505596 None:intergenic
CAACATATAATTCCTTGGTA+TGG 0.439374 7_1:-2508366 None:intergenic
TAGTTCAACTGTTGGGATTG+AGG 0.441275 7_1:-2508031 None:intergenic
TGAATTCAGTGAAGAAGATT+GGG 0.444764 7_1:+2506929 Msa1004840:CDS
CCGAAAATACCTGAAGTTCC+TGG 0.445737 7_1:-2506238 None:intergenic
GAATCTGATACTACTTGTTC+AGG 0.446010 7_1:-2508110 None:intergenic
TTGAGAGGATGTGCCTGAAC+AGG 0.446296 7_1:+2507813 Msa1004840:CDS
AAATTCTCCGGAACCTCAGC+AGG 0.446495 7_1:+2507619 Msa1004840:CDS
GAATCCGATACTACCTGTTC+AGG 0.449477 7_1:-2507826 None:intergenic
TCAACGAGGTGTTTCTGAAT+CGG 0.453314 7_1:+2508142 Msa1004840:three_prime_UTR
GAAGGGTCATAAAACTTCTC+TGG 0.455146 7_1:-2505915 None:intergenic
ACAAATAGTATCAGATTCTC+TGG 0.462058 7_1:+2507310 Msa1004840:CDS
GATCCTTCAGCTTCTACCTT+AGG 0.466333 7_1:-2507563 None:intergenic
TGATGAGCTTTCAACCATGC+TGG 0.468225 7_1:-2507033 None:intergenic
GTCTGAAAGTCCAGTAGAAA+GGG 0.469614 7_1:+2507445 Msa1004840:CDS
TTTCAAACATTTCTCTTAGA+GGG 0.473794 7_1:-2505205 None:intergenic
AATGTTTGAAACTTGTTTGA+GGG 0.473946 7_1:+2505217 Msa1004840:CDS
GTTTACAATTTCTTAAAGCC+AGG 0.477217 7_1:+2505578 Msa1004840:CDS
GATAATGAACATGGTAATAG+AGG 0.488596 7_1:+2507359 Msa1004840:CDS
GGTGTTACAAACCCTGGCTA+AGG 0.492045 7_1:+2505882 Msa1004840:CDS
ACAGCTAGTTTCAAATTCTC+CGG 0.492717 7_1:+2507607 Msa1004840:CDS
AATGATCTAGTTCAACTGTT+GGG 0.493963 7_1:-2508038 None:intergenic
TAACCTCACCTTGATTTGCC+AGG 0.494080 7_1:+2508406 Msa1004840:three_prime_UTR
GAAGAGGCATCATCAATCTC+AGG 0.496472 7_1:+2507254 Msa1004840:CDS
GAAATTGTAAACCTATAACT+TGG 0.496560 7_1:-2505567 None:intergenic
TGTCTGAAAGTCCAGTAGAA+AGG 0.501573 7_1:+2507444 Msa1004840:CDS
AACATATAATTCCTTGGTAT+GGG 0.503335 7_1:-2508365 None:intergenic
TGACAATGGCCTCTAGAAGA+AGG 0.503709 7_1:-2505933 None:intergenic
CATCATAAGATCTGTTACAT+TGG 0.504816 7_1:-2508175 None:intergenic
TTGATGCGGTTTACATGCAA+TGG 0.506701 7_1:-2508320 None:intergenic
TTATCACGTGGCTCAGCACC+AGG 0.511046 7_1:-2507185 None:intergenic
TTGCCTGTATTAGTTTCCGT+TGG 0.513827 7_1:-2505304 None:intergenic
ACAAGTAACCTGGCAAATCA+AGG 0.519770 7_1:-2508414 None:intergenic
AAAATTCAAGTCGTGAAACC+TGG 0.519918 7_1:+2508554 Msa1004840:three_prime_UTR
TGTAAGGGAGGCTTCAACTG+AGG 0.521218 7_1:+2504750 Msa1004840:CDS
ATTCAGTGATTCAAATATGC+AGG 0.521807 7_1:+2505463 Msa1004840:CDS
TGATGCGGTTTACATGCAAT+GGG 0.522201 7_1:-2508319 None:intergenic
GGATTCTCCGAAACTTCAAC+AGG 0.523823 7_1:+2507843 Msa1004840:three_prime_UTR
AATGCCTCCTCTGCACCGCC+AGG 0.524308 7_1:+2506220 Msa1004840:CDS
CAATGATCTAGTTCAACTGT+TGG 0.526914 7_1:-2508039 None:intergenic
AAACATGATCAAACTGATCC+TGG 0.527035 7_1:+2507167 Msa1004840:CDS
AAGTAAACATGAAGAGATGG+AGG 0.527095 7_1:+2507974 Msa1004840:three_prime_UTR
TACAACAGACGGGTTCTCTC+CGG 0.533331 7_1:+2505969 Msa1004840:CDS
AAACCAACGGAAACTAATAC+AGG 0.533548 7_1:+2505301 Msa1004840:CDS
AGATACAACATATAATTCCT+TGG 0.533921 7_1:-2508371 None:intergenic
AGGAAGTAAACATGAAGAGA+TGG 0.534064 7_1:+2507971 Msa1004840:three_prime_UTR
TCAGAGTTTGGATGATCCGC+CGG 0.540220 7_1:-2504448 None:intergenic
ATCATTGTGATCAGAAGCCT+GGG 0.542774 7_1:+2508055 Msa1004840:three_prime_UTR
TAGTGAATGCTTGAGTCTCA+TGG 0.546320 7_1:+2505858 Msa1004840:CDS
AAATGTTTGAAACTTGTTTG+AGG 0.546614 7_1:+2505216 Msa1004840:CDS
GATGAGCTTTCAACCATGCT+GGG 0.549206 7_1:-2507032 None:intergenic
TTTATTTGATCAGAAGCCTA+AGG 0.552892 7_1:+2507547 Msa1004840:CDS
TCACTTATTCTCTTAAGCAA+AGG 0.552975 7_1:-2504814 None:intergenic
TTCAACAGGTGTTCTTGAGT+CGG 0.555103 7_1:+2507857 Msa1004840:three_prime_UTR
TAAAACATCCTTGAAATGCA+TGG 0.556978 7_1:-2506192 None:intergenic
AAGCTCTCAGCTTCAAGAAG+AGG 0.557267 7_1:+2507742 Msa1004840:CDS
TGATAATGAGCATCAAAAGA+TGG 0.557678 7_1:+2507202 Msa1004840:CDS
AGCTGAAGGATCAAGTAAAG+AGG 0.560381 7_1:+2507574 Msa1004840:CDS
TTCAAGTCGTGAAACCTGGT+TGG 0.560934 7_1:+2508558 Msa1004840:three_prime_UTR
TTTGACTAAGTATGGCATTG+AGG 0.564701 7_1:+2505250 Msa1004840:CDS
GACACACCTTGGTCTCAATA+CGG 0.564727 7_1:-2504519 None:intergenic
GCAGTCATTACCCTTAGCCA+GGG 0.564821 7_1:-2505893 None:intergenic
TGATGATGCTAAGAAAGACT+TGG 0.565398 7_1:+2508193 Msa1004840:three_prime_UTR
CTTATCAGAAGCTATTGAGA+TGG 0.565855 7_1:+2504777 Msa1004840:CDS
GAACTAGAGGTAAAAGCTGA+AGG 0.566004 7_1:+2507785 Msa1004840:CDS
AGAAAGCAAACATCAAGAGA+TGG 0.566249 7_1:+2507706 Msa1004840:CDS
CATCACAGCAGCTGAAGGTG+TGG 0.568040 7_1:-2506880 None:intergenic
AAATTCTGAGCTTCAAGAAG+AGG 0.568417 7_1:+2508005 Msa1004840:three_prime_UTR
AAGCTCTGGGCTTCAAGGAG+AGG 0.569584 7_1:+2507496 Msa1004840:CDS
AGGAAGAATTGCGAAGCTCT+GGG 0.570471 7_1:+2507483 Msa1004840:CDS
AGAAAGGGAACATCAGGAGA+TGG 0.572140 7_1:+2507460 Msa1004840:CDS
GAAAGCTCATCAGATTTGGA+AGG 0.575416 7_1:+2507044 Msa1004840:CDS
TCTCAGAGCAATAACACAGA+TGG 0.576340 7_1:-2505414 None:intergenic
CATGGTGGTGTTACAAACCC+TGG 0.577338 7_1:+2505876 Msa1004840:CDS
AGTTCCTGGCGGTGCAGAGG+AGG 0.577473 7_1:-2506224 None:intergenic
TTGAAATGCATGGCTGATGA+AGG 0.578462 7_1:-2506182 None:intergenic
TGTGCCTGAACAGGTAGTAT+CGG 0.581540 7_1:+2507822 Msa1004840:exon
CTTAAAGCCAGGATTCAAAG+AGG 0.583565 7_1:+2505589 Msa1004840:CDS
CACTAAATCATATCTTGATG+CGG 0.588180 7_1:-2508334 None:intergenic
AAGCCTAAGGTAGAAGCTGA+AGG 0.589416 7_1:+2507560 Msa1004840:CDS
TGAAGTTCCTGGCGGTGCAG+AGG 0.589491 7_1:-2506227 None:intergenic
GTTTGAAACTTGTTTGAGGG+TGG 0.591536 7_1:+2505220 Msa1004840:CDS
GACAATGGCCTCTAGAAGAA+GGG 0.593922 7_1:-2505932 None:intergenic
GATGAAAAGTGATGAAAGCG+TGG 0.596155 7_1:+2507130 Msa1004840:CDS
GAGAGTCGTGACTTTAAGCA+AGG 0.599497 7_1:+2507419 Msa1004840:CDS
AAGCAAACATCAAGAGATGG+AGG 0.601925 7_1:+2507709 Msa1004840:CDS
AACCAACAAAACAAGTAACC+TGG 0.603011 7_1:-2508424 None:intergenic
GATTGCATCACAGCAGCTGA+AGG 0.603283 7_1:-2506885 None:intergenic
ATAAAACTAGATCATTTACT+GGG 0.607005 7_1:-2507529 None:intergenic
AGGTTAAGAGTTTAAACCAA+CGG 0.607511 7_1:+2505288 Msa1004840:CDS
GACCCAGCATCCAAAATCGA+TGG 0.608876 7_1:+2504696 Msa1004840:CDS
AAGCTCTAGATTTCAAGAAG+AGG 0.610575 7_1:+2507238 Msa1004840:CDS
AATTCAGAAACAACCTGCTG+AGG 0.611078 7_1:-2507632 None:intergenic
AAGGGAACATCAGGAGATGG+AGG 0.611107 7_1:+2507463 Msa1004840:CDS
GTGTTACAAACCCTGGCTAA+GGG 0.613260 7_1:+2505883 Msa1004840:CDS
GATTCTCTGGCACTTCAACA+AGG 0.620905 7_1:+2507323 Msa1004840:CDS
AAGCTGAAGGATCAATTGAG+AGG 0.622912 7_1:+2507798 Msa1004840:CDS
AGAACGTCTGAAAGTCCAGT+AGG 0.626366 7_1:+2507951 Msa1004840:three_prime_UTR
AGTTGGCTACAAGTGTGTAA+GGG 0.626834 7_1:+2504735 Msa1004840:CDS
TATTAACCGTATTGAGACCA+AGG 0.628633 7_1:+2504513 Msa1004840:CDS
GAAGCCTGGGTAGAATCTGA+AGG 0.630011 7_1:+2508068 Msa1004840:three_prime_UTR
ATCTGAAGGATCAGTCAAAG+AGG 0.631021 7_1:+2508082 Msa1004840:three_prime_UTR
TGAGGAATTCCATTTGCAGG+AGG 0.631223 7_1:+2505268 Msa1004840:CDS
TGCGGTTTACATGCAATGGG+AGG 0.631431 7_1:-2508316 None:intergenic
AATACCACAAAATGAACTAG+AGG 0.631494 7_1:+2507772 Msa1004840:CDS
TATTAAAATGCCAAAGCCAG+CGG 0.640128 7_1:+2506836 Msa1004840:CDS
AGATGCTAAGAAAGACGATG+TGG 0.640896 7_1:+2507388 Msa1004840:CDS
TGATCCTTCAGATTCTACCC+AGG 0.645338 7_1:-2508072 None:intergenic
TGGCTACAAGTGTGTAAGGG+AGG 0.645913 7_1:+2504738 Msa1004840:CDS
CTGATGAAGGAATTTGAGCA+AGG 0.653610 7_1:-2506169 None:intergenic
AGACAAGAAAATCGTGACAA+TGG 0.654479 7_1:-2505947 None:intergenic
GAGAGTCATGACTCTCAGCA+AGG 0.663401 7_1:+2508227 Msa1004840:three_prime_UTR
ATCACAGCAGCTGAAGGTGT+GGG 0.663737 7_1:-2506879 None:intergenic
TAATGAGCATCAAAAGATGG+AGG 0.666534 7_1:+2507205 Msa1004840:CDS
TCTGAATCAGATAATGAACA+TGG 0.669954 7_1:+2507350 Msa1004840:CDS
TAACCTGGCAAATCAAGGTG+AGG 0.673692 7_1:-2508409 None:intergenic
TTGCTTAAGAGAATAAGTGA+CGG 0.683983 7_1:+2504817 Msa1004840:CDS
GAGAGTCGTGACCCTAAGCG+AGG 0.702583 7_1:+2507665 Msa1004840:CDS
CAGTACTAACACGATTCCGG+CGG 0.706986 7_1:+2504432 Msa1004840:intron
TGAATGCTTGAGTCTCATGG+TGG 0.717447 7_1:+2505861 Msa1004840:CDS
GCAATCAGATGAGAATAACG+AGG 0.730448 7_1:+2506902 Msa1004840:CDS
GAAAAGTGATGAAAGCGTGG+AGG 0.734967 7_1:+2507133 Msa1004840:CDS
AAAATACCTGAAGTTCCTGG+CGG 0.753978 7_1:-2506235 None:intergenic
ATACACTATGTAGTACAACA+AGG 0.782614 7_1:+2504485 Msa1004840:CDS
GATTCTCCAGAACTTCAACG+AGG 0.835702 7_1:+2508128 Msa1004840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTTTTTTTTTT+TGG - chr7_1:2506487-2506506 None:intergenic 0.0%
!!! TTTTTATAGTTTTGATTTAA+TGG + chr7_1:2504989-2505008 Msa1004840:intron 10.0%
!!! TATTGTTAAAATATTTTTGT+TGG + chr7_1:2505015-2505034 Msa1004840:intron 10.0%
!!! ATTGTTAAAATATTTTTGTT+GGG + chr7_1:2505016-2505035 Msa1004840:intron 10.0%
!!! GTAAACATTTAATACAATTT+TGG + chr7_1:2503603-2503622 Msa1004840:intron 15.0%
!! GTTCAAAGAAAAAAAAAAAT+TGG - chr7_1:2503886-2503905 None:intergenic 15.0%
!! AGTTAAATGTATATAAATTG+AGG + chr7_1:2503908-2503927 Msa1004840:intron 15.0%
!! AAATGAATAATAAAATTTCG+AGG - chr7_1:2506080-2506099 None:intergenic 15.0%
!!! AAATATCTTATCATTTTTCT+TGG - chr7_1:2506560-2506579 None:intergenic 15.0%
!! CAAAGAAAAAAAAAAATTGG+TGG - chr7_1:2503883-2503902 None:intergenic 20.0%
!! AATGTATATAAATTGAGGAA+TGG + chr7_1:2503913-2503932 Msa1004840:intron 20.0%
!!! CATACTTTTATCATGTTTAA+TGG + chr7_1:2503952-2503971 Msa1004840:intron 20.0%
!!! ACATTAGATATATTGATTTC+AGG + chr7_1:2504051-2504070 Msa1004840:intron 20.0%
!! GTCAAAAAAATTAACCAAAT+TGG - chr7_1:2504176-2504195 None:intergenic 20.0%
!! TACAATAAATTATTAGTCAC+AGG - chr7_1:2504343-2504362 None:intergenic 20.0%
!! ATTTATTGTAGTTTCTAACT+TGG + chr7_1:2504353-2504372 Msa1004840:intron 20.0%
!! GAAAAGAAAAGAAAAAAAAG+AGG - chr7_1:2504932-2504951 None:intergenic 20.0%
!! GTTACAAATATGTATATATG+TGG + chr7_1:2506262-2506281 Msa1004840:intron 20.0%
!!! ATTGAAAATTTCTTTTTCTG+TGG + chr7_1:2506392-2506411 Msa1004840:intron 20.0%
!! GAACTAGATAGAAATTATAA+TGG - chr7_1:2506514-2506533 None:intergenic 20.0%
!!! CTATCTAGTTCTTTATTAAA+AGG + chr7_1:2506523-2506542 Msa1004840:intron 20.0%
!!! CATGTTTGTTATTTAAGATT+AGG - chr7_1:2506607-2506626 None:intergenic 20.0%
!! ATAAAACTAGATCATTTACT+GGG - chr7_1:2507532-2507551 None:intergenic 20.0%
!! AATAAAACTAGATCATTTAC+TGG - chr7_1:2507533-2507552 None:intergenic 20.0%
!! AAACTATAGCTATGAAAATT+TGG - chr7_1:2508459-2508478 None:intergenic 20.0%
! ACAATGCATAAAAATATGCA+AGG + chr7_1:2503835-2503854 Msa1004840:intron 25.0%
! AGAAAAAAAAAAATTGGTGG+TGG - chr7_1:2503880-2503899 None:intergenic 25.0%
! TCTTTCATATTCTACATACA+TGG + chr7_1:2503983-2504002 Msa1004840:intron 25.0%
! TCAGGAAAATATACTCTATA+AGG - chr7_1:2504104-2504123 None:intergenic 25.0%
!! TAGAGTATATTTTCCTGATT+AGG + chr7_1:2504106-2504125 Msa1004840:intron 25.0%
! CACTATTGAAAATTTCTTCT+GGG - chr7_1:2504248-2504267 None:intergenic 25.0%
! TCACTATTGAAAATTTCTTC+TGG - chr7_1:2504249-2504268 None:intergenic 25.0%
!! AAATTATGCTTTGATAACAC+TGG + chr7_1:2504269-2504288 Msa1004840:intron 25.0%
!!! ACCTTTTTAAAACATTTCAG+AGG + chr7_1:2504307-2504326 Msa1004840:intron 25.0%
!!! ACCTCTGAAATGTTTTAAAA+AGG - chr7_1:2504311-2504330 None:intergenic 25.0%
!!! AATTTTTTTTGCTCCTACAT+TGG - chr7_1:2505101-2505120 None:intergenic 25.0%
! TTTCAAACATTTCTCTTAGA+GGG - chr7_1:2505208-2505227 None:intergenic 25.0%
!! AAATGTTTGAAACTTGTTTG+AGG + chr7_1:2505216-2505235 Msa1004840:CDS 25.0%
!! AATGTTTGAAACTTGTTTGA+GGG + chr7_1:2505217-2505236 Msa1004840:CDS 25.0%
! GAAATTGTAAACCTATAACT+TGG - chr7_1:2505570-2505589 None:intergenic 25.0%
!! CTTTGATCCACAAAATTTTA+AGG + chr7_1:2505677-2505696 Msa1004840:intron 25.0%
!!! TCCACAAAATTTTAAGGTAT+TGG + chr7_1:2505683-2505702 Msa1004840:intron 25.0%
!!! TTAGTTCATTTTATTTGCTC+TGG + chr7_1:2505750-2505769 Msa1004840:intron 25.0%
! TCATCAACAAAAAAAACTCT+CGG - chr7_1:2506009-2506028 None:intergenic 25.0%
! GTTCTTTATTAAAAGGAGAA+AGG + chr7_1:2506530-2506549 Msa1004840:intron 25.0%
!! AATGATAAGATATTTTGCAG+AGG + chr7_1:2506565-2506584 Msa1004840:intron 25.0%
!! TTTTCAAACCATCTAAACTT+TGG - chr7_1:2506637-2506656 None:intergenic 25.0%
! AACAGTAGTTAATCAGAATA+TGG - chr7_1:2506722-2506741 None:intergenic 25.0%
! AACATATAATTCCTTGGTAT+GGG - chr7_1:2508368-2508387 None:intergenic 25.0%
! AGATACAACATATAATTCCT+TGG - chr7_1:2508374-2508393 None:intergenic 25.0%
!!! TTACTTGTTTTGTTGGTTTA+TGG + chr7_1:2508429-2508448 Msa1004840:three_prime_UTR 25.0%
! AACTGCAATAGCATTGAATT+GGG + chr7_1:2503626-2503645 Msa1004840:intron 30.0%
CAGTAGATTTAAGAATGTAC+AGG - chr7_1:2503656-2503675 None:intergenic 30.0%
ATATATTGATGCAGTGAACA+AGG - chr7_1:2503703-2503722 None:intergenic 30.0%
GCATAAAAATATGCAAGGTA+CGG + chr7_1:2503840-2503859 Msa1004840:intron 30.0%
CATAAAAATATGCAAGGTAC+GGG + chr7_1:2503841-2503860 Msa1004840:intron 30.0%
ATAAAAATATGCAAGGTACG+GGG + chr7_1:2503842-2503861 Msa1004840:intron 30.0%
TATAAATTGAGGAATGGTCA+TGG + chr7_1:2503919-2503938 Msa1004840:intron 30.0%
CTACATACATGGATAATTCT+TGG + chr7_1:2503994-2504013 Msa1004840:intron 30.0%
!!! TGCAATATCGATTTTATCAC+AGG + chr7_1:2504025-2504044 Msa1004840:intron 30.0%
ATACACTATGTAGTACAACA+AGG + chr7_1:2504485-2504504 Msa1004840:CDS 30.0%
AAATGTTCACAAAACCATAC+TGG - chr7_1:2504583-2504602 None:intergenic 30.0%
!! TTCTATATTCTCTGAAGTCA+CGG + chr7_1:2504607-2504626 Msa1004840:intron 30.0%
! AGTAATGACGATCATCTTTT+AGG - chr7_1:2504648-2504667 None:intergenic 30.0%
TCACTTATTCTCTTAAGCAA+AGG - chr7_1:2504817-2504836 None:intergenic 30.0%
TTGCTTAAGAGAATAAGTGA+CGG + chr7_1:2504817-2504836 Msa1004840:CDS 30.0%
AGTATGAATATGCTTACAAC+TGG - chr7_1:2504862-2504881 None:intergenic 30.0%
CAAAATATCTTGAACCATGT+GGG - chr7_1:2505056-2505075 None:intergenic 30.0%
TCAAAATATCTTGAACCATG+TGG - chr7_1:2505057-2505076 None:intergenic 30.0%
GTTTCAAACATTTCTCTTAG+AGG - chr7_1:2505209-2505228 None:intergenic 30.0%
AGGTTAAGAGTTTAAACCAA+CGG + chr7_1:2505288-2505307 Msa1004840:CDS 30.0%
TTGAATCACTGAATACAGTT+TGG - chr7_1:2505457-2505476 None:intergenic 30.0%
ATTCAGTGATTCAAATATGC+AGG + chr7_1:2505463-2505482 Msa1004840:CDS 30.0%
CAACAATAAATTTCAGTCGT+TGG - chr7_1:2505541-2505560 None:intergenic 30.0%
GACTGAAATTTATTGTTGAC+AGG + chr7_1:2505543-2505562 Msa1004840:intron 30.0%
GTTTACAATTTCTTAAAGCC+AGG + chr7_1:2505578-2505597 Msa1004840:CDS 30.0%
TCATTCTTAATGTTTCTTGC+TGG + chr7_1:2505631-2505650 Msa1004840:intron 30.0%
CATTCTTAATGTTTCTTGCT+GGG + chr7_1:2505632-2505651 Msa1004840:intron 30.0%
ATTCTTAATGTTTCTTGCTG+GGG + chr7_1:2505633-2505652 Msa1004840:intron 30.0%
! GCCAATACCTTAAAATTTTG+TGG - chr7_1:2505687-2505706 None:intergenic 30.0%
GAAAAATATAACGAGAGAGT+CGG + chr7_1:2505825-2505844 Msa1004840:intron 30.0%
! ATTTTCTTGTCTACAACAGA+CGG + chr7_1:2505958-2505977 Msa1004840:CDS 30.0%
TAAAACATCCTTGAAATGCA+TGG - chr7_1:2506195-2506214 None:intergenic 30.0%
TATAATCTCCATCATGGAAA+TGG - chr7_1:2506364-2506383 None:intergenic 30.0%
CCAAAATATAATCTCCATCA+TGG - chr7_1:2506370-2506389 None:intergenic 30.0%
!! CCATGATGGAGATTATATTT+TGG + chr7_1:2506367-2506386 Msa1004840:intron 30.0%
!! GGCATTTTAATATCCAAAAC+TGG - chr7_1:2506828-2506847 None:intergenic 30.0%
ATGAATTCAGTGAAGAAGAT+TGG + chr7_1:2506928-2506947 Msa1004840:CDS 30.0%
TGAATTCAGTGAAGAAGATT+GGG + chr7_1:2506929-2506948 Msa1004840:CDS 30.0%
! TGATAATGAGCATCAAAAGA+TGG + chr7_1:2507202-2507221 Msa1004840:CDS 30.0%
ACAAATAGTATCAGATTCTC+TGG + chr7_1:2507310-2507329 Msa1004840:CDS 30.0%
TCTGAATCAGATAATGAACA+TGG + chr7_1:2507350-2507369 Msa1004840:CDS 30.0%
GATAATGAACATGGTAATAG+AGG + chr7_1:2507359-2507378 Msa1004840:CDS 30.0%
TTTATTTGATCAGAAGCCTA+AGG + chr7_1:2507547-2507566 Msa1004840:CDS 30.0%
AATACCACAAAATGAACTAG+AGG + chr7_1:2507772-2507791 Msa1004840:CDS 30.0%
!! TTTACCTCTAGTTCATTTTG+TGG - chr7_1:2507779-2507798 None:intergenic 30.0%
! AATGATCTAGTTCAACTGTT+GGG - chr7_1:2508041-2508060 None:intergenic 30.0%
CATCATAAGATCTGTTACAT+TGG - chr7_1:2508178-2508197 None:intergenic 30.0%
! CTATTCTGTTCTTTTTCTAC+TGG - chr7_1:2508266-2508285 None:intergenic 30.0%
CACTAAATCATATCTTGATG+CGG - chr7_1:2508337-2508356 None:intergenic 30.0%
CAACATATAATTCCTTGGTA+TGG - chr7_1:2508369-2508388 None:intergenic 30.0%
CATAGATTTAAAAACCAACC+AGG - chr7_1:2508575-2508594 None:intergenic 30.0%
! GAACTGCAATAGCATTGAAT+TGG + chr7_1:2503625-2503644 Msa1004840:intron 35.0%
!! TATCCTCATACATAGTGGAT+TGG - chr7_1:2503731-2503750 None:intergenic 35.0%
TCCACTATGTATGAGGATAT+TGG + chr7_1:2503732-2503751 Msa1004840:intron 35.0%
TCCAATATCCTCATACATAG+TGG - chr7_1:2503736-2503755 None:intergenic 35.0%
!! AAAAAAAAATTGGTGGTGGC+CGG - chr7_1:2503876-2503895 None:intergenic 35.0%
ACGCCATTCAAGAACAAATT+GGG - chr7_1:2504132-2504151 None:intergenic 35.0%
!! GTTTCATTTGTTTTCCCTAC+AGG + chr7_1:2504209-2504228 Msa1004840:intron 35.0%
ATCACATCAACTTCAGAGTT+TGG - chr7_1:2504463-2504482 None:intergenic 35.0%
TATTAACCGTATTGAGACCA+AGG + chr7_1:2504513-2504532 Msa1004840:CDS 35.0%
! TTTTTCTATCTGAGCCAGTA+TGG + chr7_1:2504566-2504585 Msa1004840:intron 35.0%
!!! GTTCTGGCATTAGTTTTAGT+TGG + chr7_1:2504718-2504737 Msa1004840:CDS 35.0%
CTTATCAGAAGCTATTGAGA+TGG + chr7_1:2504777-2504796 Msa1004840:CDS 35.0%
!! ACAACTGGTTTGGAGTAAAA+TGG - chr7_1:2504847-2504866 None:intergenic 35.0%
GAATATGCTTACAACTGGTT+TGG - chr7_1:2504857-2504876 None:intergenic 35.0%
TAGCAATTCACAAGAAAGGA+GGG - chr7_1:2504886-2504905 None:intergenic 35.0%
ACACTAGCAATTCACAAGAA+AGG - chr7_1:2504890-2504909 None:intergenic 35.0%
! TACATTGGTAGCTTCATGTT+TGG - chr7_1:2505086-2505105 None:intergenic 35.0%
AAACATGAAGCTACCAATGT+AGG + chr7_1:2505085-2505104 Msa1004840:intron 35.0%
TCATTCAACAGCACAACTAA+AGG + chr7_1:2505130-2505149 Msa1004840:intron 35.0%
!!! GTCATTCTTTTTTGTAGACG+AGG + chr7_1:2505160-2505179 Msa1004840:intron 35.0%
TTTGACTAAGTATGGCATTG+AGG + chr7_1:2505250-2505269 Msa1004840:CDS 35.0%
AAACCAACGGAAACTAATAC+AGG + chr7_1:2505301-2505320 Msa1004840:CDS 35.0%
AATTATAGTAGTCGCGAAAC+TGG + chr7_1:2505349-2505368 Msa1004840:CDS 35.0%
AGTCGTTGGTATTTCTTTCT+GGG - chr7_1:2505527-2505546 None:intergenic 35.0%
ATTTACACCTCTTTGAATCC+TGG - chr7_1:2505599-2505618 None:intergenic 35.0%
! TTTTATGACCCTTCTTCTAG+AGG + chr7_1:2505924-2505943 Msa1004840:CDS 35.0%
AGACAAGAAAATCGTGACAA+TGG - chr7_1:2505950-2505969 None:intergenic 35.0%
! TTTTCTTGTCTACAACAGAC+GGG + chr7_1:2505959-2505978 Msa1004840:CDS 35.0%
CTCGGTTGAAGTTATATTAC+CGG - chr7_1:2505991-2506010 None:intergenic 35.0%
CATCATGGAAATGGAATTAG+AGG - chr7_1:2506355-2506374 None:intergenic 35.0%
CTCTAATTCCATTTCCATGA+TGG + chr7_1:2506353-2506372 Msa1004840:intron 35.0%
AATAATAAGCTTCCGAACTC+TGG + chr7_1:2506420-2506439 Msa1004840:intron 35.0%
ATAATAAGCTTCCGAACTCT+GGG + chr7_1:2506421-2506440 Msa1004840:intron 35.0%
!!! TTTTTTTGGTGTTAACCCTC+TGG - chr7_1:2506473-2506492 None:intergenic 35.0%
GTAGCATTCCAAAGTTTAGA+TGG + chr7_1:2506626-2506645 Msa1004840:intron 35.0%
ATCAACAAAATCTTGCGTCT+TGG + chr7_1:2506667-2506686 Msa1004840:intron 35.0%
GGATTCTGTTACAGATGTTT+AGG + chr7_1:2506688-2506707 Msa1004840:intron 35.0%
!!! AGAACAGAAAGTACCAGTTT+TGG + chr7_1:2506812-2506831 Msa1004840:CDS 35.0%
TATTAAAATGCCAAAGCCAG+CGG + chr7_1:2506836-2506855 Msa1004840:CDS 35.0%
TTTCCTGTCTCGAAAAATGA+AGG + chr7_1:2506966-2506985 Msa1004840:CDS 35.0%
!! CATCTCTTTTTCACTGCTAA+TGG - chr7_1:2507114-2507133 None:intergenic 35.0%
AAACATGATCAAACTGATCC+TGG + chr7_1:2507167-2507186 Msa1004840:CDS 35.0%
! TTTTGATGCTCATTATCACG+TGG - chr7_1:2507200-2507219 None:intergenic 35.0%
TAATGAGCATCAAAAGATGG+AGG + chr7_1:2507205-2507224 Msa1004840:CDS 35.0%
!! AAGCTCTAGATTTCAAGAAG+AGG + chr7_1:2507238-2507257 Msa1004840:CDS 35.0%
! GAATTTGAAACTAGCTGTTC+AGG - chr7_1:2507605-2507624 None:intergenic 35.0%
! ACAGCTAGTTTCAAATTCTC+CGG + chr7_1:2507607-2507626 Msa1004840:CDS 35.0%
TCTTGATGTTTGCTTTCTAC+TGG - chr7_1:2507704-2507723 None:intergenic 35.0%
AGAAAGCAAACATCAAGAGA+TGG + chr7_1:2507706-2507725 Msa1004840:CDS 35.0%
AAGAACACCTGTTGAAGTTT+CGG - chr7_1:2507853-2507872 None:intergenic 35.0%
TCTTCATGTTTACTTCCTAC+TGG - chr7_1:2507969-2507988 None:intergenic 35.0%
AGGAAGTAAACATGAAGAGA+TGG + chr7_1:2507971-2507990 Msa1004840:three_prime_UTR 35.0%
AAGTAAACATGAAGAGATGG+AGG + chr7_1:2507974-2507993 Msa1004840:three_prime_UTR 35.0%
AAATTCTGAGCTTCAAGAAG+AGG + chr7_1:2508005-2508024 Msa1004840:three_prime_UTR 35.0%
! CAATGATCTAGTTCAACTGT+TGG - chr7_1:2508042-2508061 None:intergenic 35.0%
GAATCTGATACTACTTGTTC+AGG - chr7_1:2508113-2508132 None:intergenic 35.0%
! TGATGATGCTAAGAAAGACT+TGG + chr7_1:2508193-2508212 Msa1004840:three_prime_UTR 35.0%
AACCAACAAAACAAGTAACC+TGG - chr7_1:2508427-2508446 None:intergenic 35.0%
CAGCAACAAATTACGAATAG+AGG - chr7_1:2508494-2508513 None:intergenic 35.0%
AAAATTCAAGTCGTGAAACC+TGG + chr7_1:2508554-2508573 Msa1004840:three_prime_UTR 35.0%
ATGCCAATCCACTATGTATG+AGG + chr7_1:2503725-2503744 Msa1004840:intron 40.0%
!! AAAAAAAATTGGTGGTGGCC+GGG - chr7_1:2503875-2503894 None:intergenic 40.0%
AGAACAAATTGGGCCTAATC+AGG - chr7_1:2504122-2504141 None:intergenic 40.0%
! AGGCCCAATTTGTTCTTGAA+TGG + chr7_1:2504126-2504145 Msa1004840:intron 40.0%
CACGCCATTCAAGAACAAAT+TGG - chr7_1:2504133-2504152 None:intergenic 40.0%
! TTGTCAGCTGCTTTCCAATT+TGG + chr7_1:2504159-2504178 Msa1004840:intron 40.0%
! GCAATTTTGTGCAACCTGTA+GGG - chr7_1:2504226-2504245 None:intergenic 40.0%
!!! AACCATCGATTTTGGATGCT+GGG - chr7_1:2504701-2504720 None:intergenic 40.0%
!!! AATGCCAGAACCATCGATTT+TGG - chr7_1:2504709-2504728 None:intergenic 40.0%
TAGTTGGCTACAAGTGTGTA+AGG + chr7_1:2504734-2504753 Msa1004840:CDS 40.0%
AGTTGGCTACAAGTGTGTAA+GGG + chr7_1:2504735-2504754 Msa1004840:CDS 40.0%
AGCAATTCACAAGAAAGGAG+GGG - chr7_1:2504885-2504904 None:intergenic 40.0%
CTAGCAATTCACAAGAAAGG+AGG - chr7_1:2504887-2504906 None:intergenic 40.0%
AAAACAACTTGAGTCCCACA+TGG + chr7_1:2505039-2505058 Msa1004840:intron 40.0%
! GTTTGAAACTTGTTTGAGGG+TGG + chr7_1:2505220-2505239 Msa1004840:CDS 40.0%
!! GTTGCTGCTTTGACTAAGTA+TGG + chr7_1:2505242-2505261 Msa1004840:CDS 40.0%
CATTGAGGAATTCCATTTGC+AGG + chr7_1:2505265-2505284 Msa1004840:CDS 40.0%
AACTCTTAACCTCCTGCAAA+TGG - chr7_1:2505280-2505299 None:intergenic 40.0%
! TTGCCTGTATTAGTTTCCGT+TGG - chr7_1:2505307-2505326 None:intergenic 40.0%
TCTCAGAGCAATAACACAGA+TGG - chr7_1:2505417-2505436 None:intergenic 40.0%
TTCTTTCTGGGTAACAGCAA+TGG - chr7_1:2505515-2505534 None:intergenic 40.0%
CAGTCGTTGGTATTTCTTTC+TGG - chr7_1:2505528-2505547 None:intergenic 40.0%
TGTTGACAGGTCCAAGTTAT+AGG + chr7_1:2505556-2505575 Msa1004840:intron 40.0%
CTTAAAGCCAGGATTCAAAG+AGG + chr7_1:2505589-2505608 Msa1004840:CDS 40.0%
TAGTGAATGCTTGAGTCTCA+TGG + chr7_1:2505858-2505877 Msa1004840:CDS 40.0%
GAAGGGTCATAAAACTTCTC+TGG - chr7_1:2505918-2505937 None:intergenic 40.0%
TGATCATGCAAACGAATGAC+AGG + chr7_1:2506103-2506122 Msa1004840:intron 40.0%
AAGGCGAGAAACAAGCTTAA+TGG - chr7_1:2506153-2506172 None:intergenic 40.0%
CTGATGAAGGAATTTGAGCA+AGG - chr7_1:2506172-2506191 None:intergenic 40.0%
TTGAAATGCATGGCTGATGA+AGG - chr7_1:2506185-2506204 None:intergenic 40.0%
TTCATCAGCCATGCATTTCA+AGG + chr7_1:2506184-2506203 Msa1004840:CDS 40.0%
AAAATACCTGAAGTTCCTGG+CGG - chr7_1:2506238-2506257 None:intergenic 40.0%
! CCAGGAACTTCAGGTATTTT+CGG + chr7_1:2506238-2506257 Msa1004840:intron 40.0%
TCTGTTATGCCACTACATGT+AGG + chr7_1:2506749-2506768 Msa1004840:intron 40.0%
CTGTTATGCCACTACATGTA+GGG + chr7_1:2506750-2506769 Msa1004840:intron 40.0%
TTCTCTTCATTTCTTACCGC+TGG - chr7_1:2506855-2506874 None:intergenic 40.0%
GCAATCAGATGAGAATAACG+AGG + chr7_1:2506902-2506921 Msa1004840:CDS 40.0%
CAAAGAAAAAGATCCCAGCA+TGG + chr7_1:2507019-2507038 Msa1004840:CDS 40.0%
GGTTGAAAGCTCATCAGATT+TGG + chr7_1:2507040-2507059 Msa1004840:CDS 40.0%
GAAAGCTCATCAGATTTGGA+AGG + chr7_1:2507044-2507063 Msa1004840:CDS 40.0%
TCAGATTTGGAAGGTTCTAC+TGG + chr7_1:2507053-2507072 Msa1004840:CDS 40.0%
GATGAAAAGTGATGAAAGCG+TGG + chr7_1:2507130-2507149 Msa1004840:CDS 40.0%
AGATGCTAAGAAAGACGATG+TGG + chr7_1:2507388-2507407 Msa1004840:CDS 40.0%
TGTCTGAAAGTCCAGTAGAA+AGG + chr7_1:2507444-2507463 Msa1004840:CDS 40.0%
GTCTGAAAGTCCAGTAGAAA+GGG + chr7_1:2507445-2507464 Msa1004840:CDS 40.0%
AGCTGAAGGATCAAGTAAAG+AGG + chr7_1:2507574-2507593 Msa1004840:CDS 40.0%
AATTCAGAAACAACCTGCTG+AGG - chr7_1:2507635-2507654 None:intergenic 40.0%
AAGCAAACATCAAGAGATGG+AGG + chr7_1:2507709-2507728 Msa1004840:CDS 40.0%
GAACTAGAGGTAAAAGCTGA+AGG + chr7_1:2507785-2507804 Msa1004840:CDS 40.0%
AAGCTGAAGGATCAATTGAG+AGG + chr7_1:2507798-2507817 Msa1004840:CDS 40.0%
TTCAACAGGTGTTCTTGAGT+CGG + chr7_1:2507857-2507876 Msa1004840:three_prime_UTR 40.0%
TAGTTCAACTGTTGGGATTG+AGG - chr7_1:2508034-2508053 None:intergenic 40.0%
ATCATTGTGATCAGAAGCCT+GGG + chr7_1:2508055-2508074 Msa1004840:three_prime_UTR 40.0%
ATCTGAAGGATCAGTCAAAG+AGG + chr7_1:2508082-2508101 Msa1004840:three_prime_UTR 40.0%
! TCAACGAGGTGTTTCTGAAT+CGG + chr7_1:2508142-2508161 Msa1004840:three_prime_UTR 40.0%
TGATGCGGTTTACATGCAAT+GGG - chr7_1:2508322-2508341 None:intergenic 40.0%
TTGATGCGGTTTACATGCAA+TGG - chr7_1:2508323-2508342 None:intergenic 40.0%
!!! GTGTCATTTTTCCCATACCA+AGG + chr7_1:2508354-2508373 Msa1004840:three_prime_UTR 40.0%
ACAAGTAACCTGGCAAATCA+AGG - chr7_1:2508417-2508436 None:intergenic 40.0%
!!! TGCCAGGTTACTTGTTTTGT+TGG + chr7_1:2508422-2508441 Msa1004840:three_prime_UTR 40.0%
! TGAGCATAGCTCAGTTGGTA+TGG + chr7_1:2503812-2503831 Msa1004840:intron 45.0%
!! AAAAAAATTGGTGGTGGCCG+GGG - chr7_1:2503874-2503893 None:intergenic 45.0%
! GGCAATTTTGTGCAACCTGT+AGG - chr7_1:2504227-2504246 None:intergenic 45.0%
GTGCAGTACTAACACGATTC+CGG + chr7_1:2504429-2504448 Msa1004840:intron 45.0%
GACACACCTTGGTCTCAATA+CGG - chr7_1:2504522-2504541 None:intergenic 45.0%
CATACACAACAGACACACCT+TGG - chr7_1:2504533-2504552 None:intergenic 45.0%
!!! GAACCATCGATTTTGGATGC+TGG - chr7_1:2504702-2504721 None:intergenic 45.0%
GCATCCAAAATCGATGGTTC+TGG + chr7_1:2504702-2504721 Msa1004840:CDS 45.0%
TGAGGAATTCCATTTGCAGG+AGG + chr7_1:2505268-2505287 Msa1004840:CDS 45.0%
TGAATGCTTGAGTCTCATGG+TGG + chr7_1:2505861-2505880 Msa1004840:CDS 45.0%
GTGTTACAAACCCTGGCTAA+GGG + chr7_1:2505883-2505902 Msa1004840:CDS 45.0%
! GACAATGGCCTCTAGAAGAA+GGG - chr7_1:2505935-2505954 None:intergenic 45.0%
! TGACAATGGCCTCTAGAAGA+AGG - chr7_1:2505936-2505955 None:intergenic 45.0%
CCGAAAATACCTGAAGTTCC+TGG - chr7_1:2506241-2506260 None:intergenic 45.0%
GTATCACACCCTACATGTAG+TGG - chr7_1:2506761-2506780 None:intergenic 45.0%
!! TCATTTCTTACCGCTGGCTT+TGG - chr7_1:2506849-2506868 None:intergenic 45.0%
!!! CCACCTTCATTTTTCGAGAC+AGG - chr7_1:2506972-2506991 None:intergenic 45.0%
CCTGTCTCGAAAAATGAAGG+TGG + chr7_1:2506969-2506988 Msa1004840:CDS 45.0%
GATGAGCTTTCAACCATGCT+GGG - chr7_1:2507035-2507054 None:intergenic 45.0%
TGATGAGCTTTCAACCATGC+TGG - chr7_1:2507036-2507055 None:intergenic 45.0%
! GAAAAGTGATGAAAGCGTGG+AGG + chr7_1:2507133-2507152 Msa1004840:CDS 45.0%
!! GAAGAGGCATCATCAATCTC+AGG + chr7_1:2507254-2507273 Msa1004840:CDS 45.0%
GATTCTCTGGCACTTCAACA+AGG + chr7_1:2507323-2507342 Msa1004840:CDS 45.0%
GAGAGTCGTGACTTTAAGCA+AGG + chr7_1:2507419-2507438 Msa1004840:CDS 45.0%
TCCAGTAGAAAGGGAACATC+AGG + chr7_1:2507454-2507473 Msa1004840:CDS 45.0%
TCCTGATGTTCCCTTTCTAC+TGG - chr7_1:2507458-2507477 None:intergenic 45.0%
AGAAAGGGAACATCAGGAGA+TGG + chr7_1:2507460-2507479 Msa1004840:CDS 45.0%
AGGAAGAATTGCGAAGCTCT+GGG + chr7_1:2507483-2507502 Msa1004840:CDS 45.0%
AAGCCTAAGGTAGAAGCTGA+AGG + chr7_1:2507560-2507579 Msa1004840:CDS 45.0%
GATCCTTCAGCTTCTACCTT+AGG - chr7_1:2507566-2507585 None:intergenic 45.0%
TTTCAGACGTTCCTCGCTTA+GGG - chr7_1:2507679-2507698 None:intergenic 45.0%
AAGCTCTCAGCTTCAAGAAG+AGG + chr7_1:2507742-2507761 Msa1004840:CDS 45.0%
TGTGCCTGAACAGGTAGTAT+CGG + chr7_1:2507822-2507841 Msa1004840:exon 45.0%
GAATCCGATACTACCTGTTC+AGG - chr7_1:2507829-2507848 None:intergenic 45.0%
GGATTCTCCGAAACTTCAAC+AGG + chr7_1:2507843-2507862 Msa1004840:three_prime_UTR 45.0%
AGAACGTCTGAAAGTCCAGT+AGG + chr7_1:2507951-2507970 Msa1004840:three_prime_UTR 45.0%
GATCATTGTGATCAGAAGCC+TGG + chr7_1:2508054-2508073 Msa1004840:three_prime_UTR 45.0%
GATTCTCCAGAACTTCAACG+AGG + chr7_1:2508128-2508147 Msa1004840:three_prime_UTR 45.0%
GAAACACCTCGTTGAAGTTC+TGG - chr7_1:2508137-2508156 None:intergenic 45.0%
!! TAACCTCACCTTGATTTGCC+AGG + chr7_1:2508406-2508425 Msa1004840:three_prime_UTR 45.0%
TAACCTGGCAAATCAAGGTG+AGG - chr7_1:2508412-2508431 None:intergenic 45.0%
TTCAAGTCGTGAAACCTGGT+TGG + chr7_1:2508558-2508577 Msa1004840:three_prime_UTR 45.0%
CAGTACTAACACGATTCCGG+CGG + chr7_1:2504432-2504451 Msa1004840:intron 50.0%
TCAGAGTTTGGATGATCCGC+CGG - chr7_1:2504451-2504470 None:intergenic 50.0%
GACCCAGCATCCAAAATCGA+TGG + chr7_1:2504696-2504715 Msa1004840:CDS 50.0%
TGGCTACAAGTGTGTAAGGG+AGG + chr7_1:2504738-2504757 Msa1004840:CDS 50.0%
TGTAAGGGAGGCTTCAACTG+AGG + chr7_1:2504750-2504769 Msa1004840:CDS 50.0%
! TTTTGTAGACGAGGCTGCAC+TGG + chr7_1:2505169-2505188 Msa1004840:intron 50.0%
!! CATGGTGGTGTTACAAACCC+TGG + chr7_1:2505876-2505895 Msa1004840:CDS 50.0%
! GGTGTTACAAACCCTGGCTA+AGG + chr7_1:2505882-2505901 Msa1004840:CDS 50.0%
GCAGTCATTACCCTTAGCCA+GGG - chr7_1:2505896-2505915 None:intergenic 50.0%
! TACAACAGACGGGTTCTCTC+CGG + chr7_1:2505969-2505988 Msa1004840:CDS 50.0%
TTCCGAACTCTGGGTTACCA+GGG + chr7_1:2506430-2506449 Msa1004840:intron 50.0%
! GTTAACCCTCTGGTTCCCAA+GGG - chr7_1:2506463-2506482 None:intergenic 50.0%
! TGTTAACCCTCTGGTTCCCA+AGG - chr7_1:2506464-2506483 None:intergenic 50.0%
! ATCACAGCAGCTGAAGGTGT+GGG - chr7_1:2506882-2506901 None:intergenic 50.0%
GATTGCATCACAGCAGCTGA+AGG - chr7_1:2506888-2506907 None:intergenic 50.0%
AAGGGAACATCAGGAGATGG+AGG + chr7_1:2507463-2507482 Msa1004840:CDS 50.0%
GAGGAAGAATTGCGAAGCTC+TGG + chr7_1:2507482-2507501 Msa1004840:CDS 50.0%
AAATTCTCCGGAACCTCAGC+AGG + chr7_1:2507619-2507638 Msa1004840:CDS 50.0%
GAAACAACCTGCTGAGGTTC+CGG - chr7_1:2507629-2507648 None:intergenic 50.0%
CTTTCAGACGTTCCTCGCTT+AGG - chr7_1:2507680-2507699 None:intergenic 50.0%
TTGAGAGGATGTGCCTGAAC+AGG + chr7_1:2507813-2507832 Msa1004840:CDS 50.0%
GAGAGTCATGACTCTCAGCA+AGG + chr7_1:2508227-2508246 Msa1004840:three_prime_UTR 50.0%
TGCGGTTTACATGCAATGGG+AGG - chr7_1:2508319-2508338 None:intergenic 50.0%
CCAACTGAGCTATGCTCACG+AGG - chr7_1:2503810-2503829 None:intergenic 55.0%
CCTCGTGAGCATAGCTCAGT+TGG + chr7_1:2503807-2503826 Msa1004840:intron 55.0%
AAGGTACGGGGTTCAAACCC+CGG + chr7_1:2503854-2503873 Msa1004840:intron 55.0%
GGCAGTCATTACCCTTAGCC+AGG - chr7_1:2505897-2505916 None:intergenic 55.0%
CTTCCGAACTCTGGGTTACC+AGG + chr7_1:2506429-2506448 Msa1004840:intron 55.0%
! CTCTGGTTCCCAAGGGAAAG+GGG - chr7_1:2506456-2506475 None:intergenic 55.0%
! CCTCTGGTTCCCAAGGGAAA+GGG - chr7_1:2506457-2506476 None:intergenic 55.0%
CCTTTCCCTTGGGAACCAGA+GGG + chr7_1:2506455-2506474 Msa1004840:intron 55.0%
CATCACAGCAGCTGAAGGTG+TGG - chr7_1:2506883-2506902 None:intergenic 55.0%
TTATCACGTGGCTCAGCACC+AGG - chr7_1:2507188-2507207 None:intergenic 55.0%
!! TTGCGAAGCTCTGGGCTTCA+AGG + chr7_1:2507491-2507510 Msa1004840:CDS 55.0%
!! AAGCTCTGGGCTTCAAGGAG+AGG + chr7_1:2507496-2507515 Msa1004840:CDS 55.0%
TGAAGTTCCTGGCGGTGCAG+AGG - chr7_1:2506230-2506249 None:intergenic 60.0%
TCTGCACCGCCAGGAACTTC+AGG + chr7_1:2506229-2506248 Msa1004840:CDS 60.0%
GGCCCTGGTAACCCAGAGTT+CGG - chr7_1:2506435-2506454 None:intergenic 60.0%
TTACCAGGGCCCCTTTCCCT+TGG + chr7_1:2506444-2506463 Msa1004840:intron 60.0%
TACCAGGGCCCCTTTCCCTT+GGG + chr7_1:2506445-2506464 Msa1004840:intron 60.0%
CCCTTTCCCTTGGGAACCAG+AGG + chr7_1:2506454-2506473 Msa1004840:intron 60.0%
! CCCTCTGGTTCCCAAGGGAA+AGG - chr7_1:2506458-2506477 None:intergenic 60.0%
GAGAGTCGTGACCCTAAGCG+AGG + chr7_1:2507665-2507684 Msa1004840:CDS 60.0%
AATGCCTCCTCTGCACCGCC+AGG + chr7_1:2506220-2506239 Msa1004840:CDS 65.0%
AGTTCCTGGCGGTGCAGAGG+AGG - chr7_1:2506227-2506246 None:intergenic 65.0%
TTCCCAAGGGAAAGGGGCCC+TGG - chr7_1:2506450-2506469 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 2503579 2508599 2503579 ID=Msa1004840;Name=Msa1004840
chr7_1 mRNA 2503579 2508599 2503579 ID=Msa1004840-mRNA-1;Parent=Msa1004840;Name=Msa1004840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.37|0.33|0.66|0.62|0.55|9|761|649
chr7_1 exon 2503579 2503583 2503579 ID=Msa1004840-mRNA-1:exon:1028;Parent=Msa1004840-mRNA-1
chr7_1 exon 2504435 2504534 2504435 ID=Msa1004840-mRNA-1:exon:1029;Parent=Msa1004840-mRNA-1
chr7_1 exon 2504694 2504838 2504694 ID=Msa1004840-mRNA-1:exon:1030;Parent=Msa1004840-mRNA-1
chr7_1 exon 2505177 2505380 2505177 ID=Msa1004840-mRNA-1:exon:1031;Parent=Msa1004840-mRNA-1
chr7_1 exon 2505396 2505484 2505396 ID=Msa1004840-mRNA-1:exon:1032;Parent=Msa1004840-mRNA-1
chr7_1 exon 2505565 2505612 2505565 ID=Msa1004840-mRNA-1:exon:1033;Parent=Msa1004840-mRNA-1
chr7_1 exon 2505826 2505990 2505826 ID=Msa1004840-mRNA-1:exon:1034;Parent=Msa1004840-mRNA-1
chr7_1 exon 2506125 2506250 2506125 ID=Msa1004840-mRNA-1:exon:1035;Parent=Msa1004840-mRNA-1
chr7_1 exon 2506771 2508599 2506771 ID=Msa1004840-mRNA-1:exon:1036;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2503579 2503583 2503579 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2504435 2504534 2504435 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2504694 2504838 2504694 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2505177 2505380 2505177 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2505396 2505484 2505396 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2505565 2505612 2505565 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2505826 2505990 2505826 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2506125 2506250 2506125 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 CDS 2506771 2507838 2506771 ID=Msa1004840-mRNA-1:cds;Parent=Msa1004840-mRNA-1
chr7_1 three_prime_UTR 2507839 2508599 2507839 ID=Msa1004840-mRNA-1:three_prime_utr;Parent=Msa1004840-mRNA-1
Gene Sequence

>Msa1004840

ATGAGTACTAACACGATTCCGGCGGATCATCCAAACTCTGAAGTTGATGTGATACATACACTATGTAGTACAACAAGGACAGTTATTAACCGTATTGAGACCAAGATGACCCAGCATCCAAAATCGATGGTTCTGGCATTAGTTTTAGTTGGCTACAAGTGTGTAAGGGAGGCTTCAACTGAGGTTTACTTATCAGAAGCTATTGAGATGGTCAACTGTACAATTCCTTTGCTTAAGAGAATAAGTGACGACGAGGCTGCACTGGAAGATAGCATTCTCCCTCTAAGAGAAATGTTTGAAACTTGTTTGAGGGTGGTTGCTGCTTTGACTAAGTATGGCATTGAGGAATTCCATTTGCAGGAGGTTAAGAGTTTAAACCAACGGAAACTAATACAGGCAAAGCTTGCATTTTCTCTTGAACAAATTATAGTAGTCGCGAAACTGGCTCTTGAAAATTGTGAAGCAAATAAATCCATCTGTGTTATTGCTCTGAGATATTGCATACGTTGTTTCCAAACTGTATTCAGTGATTCAAATATGCAGGTCCAAGTTATAGGTTTACAATTTCTTAAAGCCAGGATTCAAAGAGGTAAAAATATAACGAGAGAGTCGGTAAACATTGCTAGTGAATGCTTGAGTCTCATGGTGGTGTTACAAACCCTGGCTAAGGGTAATGACTGCCAGAGAAGTTTTATGACCCTTCTTCTAGAGGCCATTGTCACGATTTTCTTGTCTACAACAGACGGGTTCTCTCCGGAAATAAGAGATTTAAGAAGCACAGCCATTAAGCTTGTTTCTCGCCTTGCTCAAATTCCTTCATCAGCCATGCATTTCAAGGATGTTTTACTATCAATGCCTCCTCTGCACCGCCAGGAACTTCAGGGTGTGATACGAGCTTCTGTGACAAATGATAAGAATCAAACAGAACAGAAAGTACCAGTTTTGGATATTAAAATGCCAAAGCCAGCGGTAAGAAATGAAGAGAAACATCCCACACCTTCAGCTGCTGTGATGCAATCAGATGAGAATAACGAGGAAGATGAATTCAGTGAAGAAGATTGGGATGCTTTTCAGTCTTTTCCTGTCTCGAAAAATGAAGGTGGAGATGAATCAAAAACAGAGCTTTCTGACAAAGAAAAAGATCCCAGCATGGTTGAAAGCTCATCAGATTTGGAAGGTTCTACTGGAGATGTTGAGTTTCAAGAATCTGCTATTTCTAAATCCATTAGCAGTGAAAAAGAGATGAAAAGTGATGAAAGCGTGGAGGCTTTCAAAGAGAAACATGATCAAACTGATCCTGGTGCTGAGCCACGTGATAATGAGCATCAAAAGATGGAGGAAAAACTGCAAAGCTCTAGATTTCAAGAAGAGGCATCATCAATCTCAGGAAATGAACTAGAATCTTGTGAAGATATGCTTGAACAAATAGTATCAGATTCTCTGGCACTTCAACAAGGTGTTTCTGAATCAGATAATGAACATGGTAATAGAGGTGAAGAAGATGCTAAGAAAGACGATGTGGATGAAAATGAGAGTCGTGACTTTAAGCAAGGAATGTCTGAAAGTCCAGTAGAAAGGGAACATCAGGAGATGGAGGAAGAATTGCGAAGCTCTGGGCTTCAAGGAGAGGCATCAGCAATCCCAGTAAATGATCTAGTTTTATTTGATCAGAAGCCTAAGGTAGAAGCTGAAGGATCAAGTAAAGAGGATATGCCTGAACAGCTAGTTTCAAATTCTCCGGAACCTCAGCAGGTTGTTTCTGAATTAGATGAAAATGAGAGTCGTGACCCTAAGCGAGGAACGTCTGAAAGTCCAGTAGAAAGCAAACATCAAGAGATGGAGGAAGAATTACAAAGCTCTCAGCTTCAAGAAGAGGCATTAGCAATACCACAAAATGAACTAGAGGTAAAAGCTGAAGGATCAATTGAGAGGATGTGCCTGAACAGGTAG

Protein sequence

>Msa1004840

MSTNTIPADHPNSEVDVIHTLCSTTRTVINRIETKMTQHPKSMVLALVLVGYKCVREASTEVYLSEAIEMVNCTIPLLKRISDDEAALEDSILPLREMFETCLRVVAALTKYGIEEFHLQEVKSLNQRKLIQAKLAFSLEQIIVVAKLALENCEANKSICVIALRYCIRCFQTVFSDSNMQVQVIGLQFLKARIQRGKNITRESVNIASECLSLMVVLQTLAKGNDCQRSFMTLLLEAIVTIFLSTTDGFSPEIRDLRSTAIKLVSRLAQIPSSAMHFKDVLLSMPPLHRQELQGVIRASVTNDKNQTEQKVPVLDIKMPKPAVRNEEKHPTPSAAVMQSDENNEEDEFSEEDWDAFQSFPVSKNEGGDESKTELSDKEKDPSMVESSSDLEGSTGDVEFQESAISKSISSEKEMKSDESVEAFKEKHDQTDPGAEPRDNEHQKMEEKLQSSRFQEEASSISGNELESCEDMLEQIVSDSLALQQGVSESDNEHGNRGEEDAKKDDVDENESRDFKQGMSESPVEREHQEMEEELRSSGLQGEASAIPVNDLVLFDQKPKVEAEGSSKEDMPEQLVSNSPEPQQVVSELDENESRDPKRGTSESPVESKHQEMEEELQSSQLQEEALAIPQNELEVKAEGSIERMCLNR*