AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598160 MtrunA17_Chr4g0021001 98.547 344 5 0 1 344 1 344 0.0 693
Msa0598160 MtrunA17_Chr7g0249531 39.130 115 56 4 1 111 1 105 2.12e-15 76.6
Msa0598160 MtrunA17_Chr7g0249531 27.941 136 92 2 135 265 209 343 2.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598160 AT5G51410.2 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0598160 AT5G51410.1 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0598160 AT5G51410.4 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0598160 AT5G51410.3 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0598160 AT5G51410.5 78.889 270 56 1 1 269 1 270 7.44e-154 435
Msa0598160 AT3G03340.1 30.526 190 115 5 1 186 1 177 7.93e-17 81.3
Msa0598160 AT3G03340.1 35.220 159 78 7 116 263 198 342 1.50e-14 74.7
Msa0598160 AT3G03340.2 30.526 190 115 5 1 186 79 255 1.80e-16 80.5
Msa0598160 AT3G03340.2 35.220 159 78 7 116 263 276 420 2.64e-14 73.9
Msa0598160 AT5G17440.1 30.159 189 115 5 1 185 1 176 3.48e-16 79.3
Msa0598160 AT5G17440.1 33.846 130 71 3 117 241 199 318 2.87e-13 70.9
Msa0598160 AT5G17440.2 35.345 116 65 3 1 114 1 108 6.28e-16 77.4
Msa0598160 AT3G03340.3 30.526 190 115 5 1 186 1 177 7.42e-16 77.8
Msa0598160 AT3G03340.3 35.537 121 61 4 116 230 198 307 7.07e-13 68.9

Find 144 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTCATCAATATTATTAA+TGG 0.112591 4_2:-32444327 Msa0598160:three_prime_UTR
CTTCTGTAGTTATGCTTAAT+AGG 0.142913 4_2:+32444541 None:intergenic
TAAGCAATAGTGGTAGTTTA+AGG 0.186323 4_2:+32443047 None:intergenic
TTGTAACTTCTCTCATAAAT+TGG 0.249696 4_2:-32444275 Msa0598160:three_prime_UTR
CTGTTAAAGAGTGTTAAATT+TGG 0.258347 4_2:-32443513 Msa0598160:three_prime_UTR
GCAAGATCGGCTTCAAATTT+AGG 0.292888 4_2:+32445648 None:intergenic
GAGTGTTAAATTTGGTGTTC+AGG 0.317319 4_2:-32443505 Msa0598160:three_prime_UTR
ACTGTCATTGAACTGGGCTT+TGG 0.322946 4_2:-32443601 Msa0598160:three_prime_UTR
CTGTCATTGAACTGGGCTTT+GGG 0.325212 4_2:-32443600 Msa0598160:three_prime_UTR
TCTTCTCTTGTTTGAGCTGT+TGG 0.326625 4_2:-32443158 Msa0598160:three_prime_UTR
TTCTGTAGTTATGCTTAATA+GGG 0.331026 4_2:+32444542 None:intergenic
TTTAATTGCTAGATAGCTTC+TGG 0.331096 4_2:-32443454 Msa0598160:three_prime_UTR
GGAAGTTTGTGGTTTCTATA+TGG 0.332001 4_2:-32447502 Msa0598160:CDS
CTCCGAAATGAAATACTATA+AGG 0.335764 4_2:-32443128 Msa0598160:three_prime_UTR
TGTTTGAATTGAACATTCAT+AGG 0.337016 4_2:-32443693 Msa0598160:three_prime_UTR
GACTGGAAAATACAGGTATT+TGG 0.338145 4_2:-32443671 Msa0598160:three_prime_UTR
TTCCTTATAGTATTTCATTT+CGG 0.342310 4_2:+32443126 None:intergenic
GGAGAAAATAAAGAACCTTC+TGG 0.354149 4_2:-32445392 Msa0598160:CDS
TCAAAACGTTTGATAAATCT+TGG 0.369243 4_2:-32443318 Msa0598160:three_prime_UTR
GTTGAATCTCTTGGTGAAGC+TGG 0.375956 4_2:-32445364 Msa0598160:CDS
TATTACCTTGAGGGAAAGAT+TGG 0.378519 4_2:-32444068 Msa0598160:three_prime_UTR
GACGGAGTGATTCAAGTGAT+AGG 0.379473 4_2:-32444753 Msa0598160:CDS
GAGTATGAGTACCATGGATT+CGG 0.383739 4_2:+32443856 None:intergenic
GCACGTATGCATCATGCCTT+GGG 0.388877 4_2:+32445670 None:intergenic
ATTGTGCGATTGGAGGTAAT+TGG 0.394665 4_2:-32443545 Msa0598160:three_prime_UTR
AAGCAATAGTGGTAGTTTAA+GGG 0.397561 4_2:+32443048 None:intergenic
GGTAAATAACCGCGTCGTGA+TGG 0.398405 4_2:-32443417 Msa0598160:three_prime_UTR
ATCTTACTGAATTTGTTGTT+AGG 0.399949 4_2:-32443885 Msa0598160:three_prime_UTR
CAATATTATTAATGGAGAAA+AGG 0.410537 4_2:-32444319 Msa0598160:three_prime_UTR
CTCGACGAACTCATGGGTTC+AGG 0.418323 4_2:-32447656 Msa0598160:intron
ATCTGAACAGTTGTCTGTCC+TGG 0.430404 4_2:-32445416 Msa0598160:CDS
GTGATTGTCATTGCCGCAAA+AGG 0.430567 4_2:-32444129 Msa0598160:three_prime_UTR
ATTTCTGATACAAATTAACT+TGG 0.432186 4_2:+32443641 None:intergenic
AGTTATGTTACATTCTCAAC+TGG 0.432864 4_2:-32443344 Msa0598160:three_prime_UTR
CTGGAACAAGTTGAATCTCT+TGG 0.435647 4_2:-32445373 Msa0598160:CDS
TGGGACGATAAGGAAGTTTG+TGG 0.435949 4_2:-32447513 Msa0598160:CDS
GGCACGTATGCATCATGCCT+TGG 0.438040 4_2:+32445669 None:intergenic
TGTGAATCTTATTACCTTGA+GGG 0.445694 4_2:-32444077 Msa0598160:three_prime_UTR
AGCTCTCCTCGACGAACTCA+TGG 0.445844 4_2:-32447663 Msa0598160:CDS
AGTATGAGTACCATGGATTC+GGG 0.446576 4_2:+32443857 None:intergenic
ATTCCGTACGAGTTACCAAT+TGG 0.447374 4_2:+32443768 None:intergenic
ATTACCTATATCTTCTAAAC+CGG 0.448487 4_2:+32443906 None:intergenic
TTGAATTGTGTTGTTAGCTA+TGG 0.449439 4_2:-32447696 Msa0598160:exon
CAGCATTTATAAACCTGTGC+TGG 0.451398 4_2:+32443973 None:intergenic
TGCTATGCGGTGCTGTGTTG+TGG 0.451766 4_2:+32447793 None:intergenic
CTCACAAAACTGAGCAAGAT+CGG 0.453847 4_2:+32445635 None:intergenic
GGTAATCGAGATCGAGGAAG+GGG 0.456957 4_2:-32444637 Msa0598160:CDS
AATATTATTAATGGAGAAAA+GGG 0.457945 4_2:-32444318 Msa0598160:three_prime_UTR
AATGAAATCACGCAAGATAA+GGG 0.459719 4_2:+32443203 None:intergenic
GTAAATAACCGCGTCGTGAT+GGG 0.462868 4_2:-32443416 Msa0598160:three_prime_UTR
AAATGAAATCACGCAAGATA+AGG 0.465458 4_2:+32443202 None:intergenic
TCAGAATTTAAATTCAAAAG+AGG 0.469798 4_2:-32444471 Msa0598160:intron
CAAACAAGTTATTGTGCGAT+TGG 0.474312 4_2:-32443555 Msa0598160:three_prime_UTR
CATTAATAATATTGATGAAA+GGG 0.479290 4_2:+32444328 None:intergenic
TATCGAGAAATTCCACTACT+TGG 0.481237 4_2:+32444498 None:intergenic
AGAAGTGAGTTGGGACGATA+AGG 0.483654 4_2:-32447523 Msa0598160:CDS
ACTCGGATCGTGAAAGATCT+CGG 0.487797 4_2:-32444675 Msa0598160:CDS
GCAGAGACAGGTACCACAAT+CGG 0.490454 4_2:-32444579 Msa0598160:CDS
GCTATGCGGTGCTGTGTTGT+GGG 0.490511 4_2:+32447794 None:intergenic
ATAATCACAGGTGATGGACT+TGG 0.491646 4_2:-32445518 Msa0598160:intron
TGTCCAATTGGTAACTCGTA+CGG 0.493034 4_2:-32443771 Msa0598160:three_prime_UTR
TCACTCCGTCTCTTTCTCTC+AGG 0.493705 4_2:+32444766 None:intergenic
TGATTGTCATTGCCGCAAAA+GGG 0.496260 4_2:-32444128 Msa0598160:three_prime_UTR
AGAAGAGCGAAGAAAACAAA+AGG 0.502735 4_2:-32444797 Msa0598160:CDS
GCTGTCAGTGGTGGCGGTGG+TGG 0.503620 4_2:+32445445 None:intergenic
GTCAACACGCGCAGTGATCT+CGG 0.505201 4_2:-32447453 Msa0598160:intron
TAGTGGTCATATGCATACTT+TGG 0.505395 4_2:-32443295 Msa0598160:three_prime_UTR
GCGAAGAAAACAAAAGGAGC+AGG 0.514193 4_2:-32444791 Msa0598160:CDS
CTCGGATCGTGAAAGATCTC+GGG 0.514400 4_2:-32444674 Msa0598160:CDS
ATCGAGATAGGCAGCGTGAT+AGG 0.514417 4_2:-32444711 Msa0598160:CDS
ATCTCTTGGTGAAGCTGGGA+AGG 0.515528 4_2:-32445359 Msa0598160:CDS
ACGGAGTGATTCAAGTGATA+GGG 0.516868 4_2:-32444752 Msa0598160:CDS
GTCATTGCCGCAAAAGGGGA+TGG 0.516933 4_2:-32444123 Msa0598160:three_prime_UTR
GGGTTACAAAGAAGTGAGTT+GGG 0.517957 4_2:-32447532 Msa0598160:CDS
GATACAAATTAACTTGGCAA+AGG 0.519130 4_2:+32443647 None:intergenic
TTGAATCTCTTGGTGAAGCT+GGG 0.520092 4_2:-32445363 Msa0598160:CDS
ATACAAATTAACTTGGCAAA+GGG 0.523536 4_2:+32443648 None:intergenic
GGAAAGCAGCATGTTGGCTA+TGG 0.524490 4_2:-32444990 Msa0598160:CDS
GAATTGAACATTCATAGGAC+TGG 0.525227 4_2:-32443688 Msa0598160:three_prime_UTR
GGGGTTACAAAGAAGTGAGT+TGG 0.527552 4_2:-32447533 Msa0598160:CDS
CTTATAGTATTTCATTTCGG+AGG 0.528339 4_2:+32443129 None:intergenic
GAGGTAATCGAGATCGAGGA+AGG 0.532185 4_2:-32444639 Msa0598160:CDS
GAGATTCAACTTGTTCCAGA+AGG 0.534767 4_2:+32445377 None:intergenic
AAGTTGATATAAACCAGCAC+AGG 0.535092 4_2:-32443986 Msa0598160:three_prime_UTR
TTCATAGGACTGGAAAATAC+AGG 0.535322 4_2:-32443678 Msa0598160:three_prime_UTR
TTAGGCATTTCCCGAATCCA+TGG 0.541017 4_2:-32443867 Msa0598160:three_prime_UTR
ACAAGTTATTGTGCGATTGG+AGG 0.541084 4_2:-32443552 Msa0598160:three_prime_UTR
AGCTGAAGCTCTTATGAGAA+AGG 0.541211 4_2:-32445329 Msa0598160:intron
CTTCTGGACATGATATGTGC+AGG 0.542392 4_2:-32443438 Msa0598160:three_prime_UTR
CTTGACTGAGGAAGAAAGAA+GGG 0.550258 4_2:-32447553 Msa0598160:CDS
CCATTAATAATATTGATGAA+AGG 0.552598 4_2:+32444327 None:intergenic
ACTTGACTGAGGAAGAAAGA+AGG 0.553452 4_2:-32447554 Msa0598160:CDS
GATTGCTAAGGAGAAGGCTA+AGG 0.554953 4_2:-32444851 Msa0598160:CDS
CGTTTGATAAATCTTGGTAG+TGG 0.556650 4_2:-32443312 Msa0598160:three_prime_UTR
TCAGCTGTCAGTGGTGGCGG+TGG 0.557872 4_2:+32445442 None:intergenic
GGAAGAAGAAAGATTGACTC+GGG 0.558620 4_2:-32444830 Msa0598160:CDS
AGAACTCAGTCTCATGTCGC+AGG 0.559633 4_2:-32445011 Msa0598160:CDS
GAAAGATCTCGGGAATATGA+AGG 0.563627 4_2:-32444664 Msa0598160:CDS
GACATTGAACTACAATCTGA+AGG 0.563713 4_2:-32443931 Msa0598160:three_prime_UTR
ATGTGAATCTTATTACCTTG+AGG 0.567214 4_2:-32444078 Msa0598160:three_prime_UTR
GCAGCATGTTGGCTATGGTA+TGG 0.570060 4_2:-32444985 Msa0598160:CDS
TCTCGGGAATATGAAGGTAG+AGG 0.580782 4_2:-32444658 Msa0598160:CDS
TTATAGTATTTCATTTCGGA+GGG 0.584383 4_2:+32443130 None:intergenic
ATTAATGGAGAAAAGGGTCG+AGG 0.584758 4_2:-32444312 Msa0598160:three_prime_UTR
CTATTAAGCATAACTACAGA+AGG 0.587485 4_2:-32444540 Msa0598160:CDS
GTTGTGTTTGCTCCAAGTAG+TGG 0.588205 4_2:-32444510 Msa0598160:three_prime_UTR
AAATACCAATCTTTCCCTCA+AGG 0.593035 4_2:+32444063 None:intergenic
GCTCTCCTCGACGAACTCAT+GGG 0.594522 4_2:-32447662 Msa0598160:CDS
GAACTACAATCTGAAGGCAC+CGG 0.594986 4_2:-32443925 Msa0598160:three_prime_UTR
AATTGGTAACTCGTACGGAA+TGG 0.596682 4_2:-32443766 Msa0598160:three_prime_UTR
GATTGTCATTGCCGCAAAAG+GGG 0.597028 4_2:-32444127 Msa0598160:three_prime_UTR
AACGTGATCTGCTCCGATTG+TGG 0.597216 4_2:+32444566 None:intergenic
TGACTTCATAAATGAATACA+AGG 0.598021 4_2:-32444958 Msa0598160:intron
AGGAAGAAGAAAGATTGACT+CGG 0.603218 4_2:-32444831 Msa0598160:CDS
GGTAGAGGTAATCGAGATCG+AGG 0.605352 4_2:-32444643 Msa0598160:CDS
GTCGCAGGAAAGCAGCATGT+TGG 0.607800 4_2:-32444996 Msa0598160:CDS
GGCACCGGTTTAGAAGATAT+AGG 0.609877 4_2:-32443910 Msa0598160:three_prime_UTR
AGGTAATCGAGATCGAGGAA+GGG 0.610688 4_2:-32444638 Msa0598160:CDS
AATGCTTCAGGAGAAGAAGA+TGG 0.611727 4_2:-32445084 Msa0598160:CDS
ATCGTGATAAAGATCGAGAT+AGG 0.617765 4_2:-32444723 Msa0598160:CDS
TCTGTAGTTATGCTTAATAG+GGG 0.619225 4_2:+32444543 None:intergenic
GGTATGTGGTTCGTTTCTCG+TGG 0.623915 4_2:-32445051 Msa0598160:CDS
ATGGCACTCTGTGAGGTATG+TGG 0.625178 4_2:-32445065 Msa0598160:CDS
ATGGAGAAAAGGGTCGAGGT+AGG 0.633613 4_2:-32444308 Msa0598160:three_prime_UTR
GGAGACACTTAATACTGAGA+AGG 0.634366 4_2:-32445141 Msa0598160:CDS
TGAACAGTTGTCTGTCCTGG+AGG 0.636803 4_2:-32445413 Msa0598160:CDS
AGGATCCTGAGAGAAAGAGA+CGG 0.640354 4_2:-32444771 Msa0598160:CDS
AATTATGAGTATGAGTACCA+TGG 0.643720 4_2:+32443850 None:intergenic
GTGTTGACGAAGAGATCGTG+AGG 0.645071 4_2:+32447468 None:intergenic
TTGTTTCTCCCATCACGACG+CGG 0.647983 4_2:+32443408 None:intergenic
CTAGGGTTTCTTGTGCTATG+CGG 0.648604 4_2:+32447780 None:intergenic
ACGAGAACGTCTTAATCAAG+AGG 0.649224 4_2:-32445476 Msa0598160:CDS
ATGGTTTCTAGGTTGAGGAA+CGG 0.651338 4_2:-32444613 Msa0598160:CDS
GAAGAAGATGGCACTCTGTG+AGG 0.661944 4_2:-32445072 Msa0598160:CDS
AGAACGTCTTAATCAAGAGG+TGG 0.666877 4_2:-32445473 Msa0598160:CDS
TTCAGCTCGAAACTTGACTG+AGG 0.672653 4_2:-32447565 Msa0598160:intron
TTGACTGAGGAAGAAAGAAG+GGG 0.676867 4_2:-32447552 Msa0598160:CDS
CACGTATGCATCATGCCTTG+GGG 0.690040 4_2:+32445671 None:intergenic
GTAATCGAGATCGAGGAAGG+GGG 0.692537 4_2:-32444636 Msa0598160:CDS
TAGGTACAGAGATAGAGACT+CGG 0.703615 4_2:-32444692 Msa0598160:CDS
AAAAGAGATAGAGCGAAACG+AGG 0.720783 4_2:-32447846 Msa0598160:five_prime_UTR
TGTTGACGAAGAGATCGTGA+GGG 0.727468 4_2:+32447469 None:intergenic
CTGAACCCATGAGTTCGTCG+AGG 0.733418 4_2:+32447657 None:intergenic
TTGGATAGAAGAGTAAAACG+TGG 0.775215 4_2:-32445499 Msa0598160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTATATTAAATATA+TGG - chr4_2:32444279-32444298 Msa0598160:three_prime_UTR 0.0%
!! AATTATTTATAAGTATGTTA+AGG - chr4_2:32443694-32443713 Msa0598160:three_prime_UTR 10.0%
!! ATAAATGTATAGATTAATTT+AGG + chr4_2:32446024-32446043 None:intergenic 10.0%
!!! AATTTAGAATTTTGTATCTA+GGG + chr4_2:32443186-32443205 None:intergenic 15.0%
!!! TAATTTAGAATTTTGTATCT+AGG + chr4_2:32443187-32443206 None:intergenic 15.0%
!! GTTCAAAAAATTATTAATCT+TGG - chr4_2:32444334-32444353 Msa0598160:three_prime_UTR 15.0%
!! AAGGTTAACAAAAAAAATTA+GGG + chr4_2:32444864-32444883 None:intergenic 15.0%
!! AAAGGTTAACAAAAAAAATT+AGG + chr4_2:32444865-32444884 None:intergenic 15.0%
!! TTGACATTCAAATTTAATAT+GGG + chr4_2:32444901-32444920 None:intergenic 15.0%
!! ATTGACATTCAAATTTAATA+TGG + chr4_2:32444902-32444921 None:intergenic 15.0%
!!! CTTATATAAATATGTGTTTT+TGG - chr4_2:32446518-32446537 Msa0598160:intron 15.0%
!! CATTAATAATATTGATGAAA+GGG + chr4_2:32446621-32446640 None:intergenic 15.0%
!! AATATTATTAATGGAGAAAA+GGG - chr4_2:32446628-32446647 Msa0598160:intron 15.0%
!!! ACAAAACTATCTCATTTTAT+TGG + chr4_2:32443071-32443090 None:intergenic 20.0%
!!! ATTAAATAGTTTGAGATTTC+TGG - chr4_2:32444657-32444676 Msa0598160:CDS 20.0%
!! AAAAAATTAGGGTATACTTA+CGG + chr4_2:32444853-32444872 None:intergenic 20.0%
!!! AAGGATAAGAAACTTTTAAA+GGG + chr4_2:32444999-32445018 None:intergenic 20.0%
!!! AAAGGATAAGAAACTTTTAA+AGG + chr4_2:32445000-32445019 None:intergenic 20.0%
!!! GCATTTTATGCTTTATTTAT+CGG + chr4_2:32445164-32445183 None:intergenic 20.0%
!! GAAATCAAAAAACAATTTAC+TGG + chr4_2:32445186-32445205 None:intergenic 20.0%
!!! ATTAACACTTTTTCATTTTG+AGG + chr4_2:32445845-32445864 None:intergenic 20.0%
!! AATGAAATCATTCTTGAAAT+TGG - chr4_2:32446046-32446065 Msa0598160:intron 20.0%
!! TCAGAATTTAAATTCAAAAG+AGG - chr4_2:32446475-32446494 Msa0598160:intron 20.0%
!! CACATATTTATATAAGTCTT+GGG + chr4_2:32446514-32446533 None:intergenic 20.0%
!! ACACATATTTATATAAGTCT+TGG + chr4_2:32446515-32446534 None:intergenic 20.0%
!! CCATTAATAATATTGATGAA+AGG + chr4_2:32446622-32446641 None:intergenic 20.0%
!! CCTTTCATCAATATTATTAA+TGG - chr4_2:32446619-32446638 Msa0598160:intron 20.0%
!! CAATATTATTAATGGAGAAA+AGG - chr4_2:32446627-32446646 Msa0598160:intron 20.0%
!! AGTAATGAAACATACAAAAA+AGG + chr4_2:32446930-32446949 None:intergenic 20.0%
!!! ACTCATACTCATAATTTTAT+TGG - chr4_2:32447103-32447122 Msa0598160:intron 20.0%
!!! CTCATACTCATAATTTTATT+GGG - chr4_2:32447104-32447123 Msa0598160:intron 20.0%
!!! TCATACTCATAATTTTATTG+GGG - chr4_2:32447105-32447124 Msa0598160:intron 20.0%
!!! TTTTTTTTTTTTTACGGATG+AGG + chr4_2:32447213-32447232 None:intergenic 20.0%
!! ATTTCTGATACAAATTAACT+TGG + chr4_2:32447308-32447327 None:intergenic 20.0%
!! TTCCTTATAGTATTTCATTT+CGG + chr4_2:32447823-32447842 None:intergenic 20.0%
! AAATGTTACAAATGAGAATG+AGG - chr4_2:32443593-32443612 Msa0598160:three_prime_UTR 25.0%
! TTTCAAATTATTAGCTGTGT+CGG + chr4_2:32443795-32443814 None:intergenic 25.0%
!!! TGCAATGTTTTTGAAAATCA+CGG + chr4_2:32444034-32444053 None:intergenic 25.0%
!!! TTTGACTTTTTGTTCGTATT+TGG - chr4_2:32444209-32444228 Msa0598160:three_prime_UTR 25.0%
!!! TTTTTGTTCGTATTTGGAAT+AGG - chr4_2:32444215-32444234 Msa0598160:three_prime_UTR 25.0%
!! TAAGATATTTAGAGTTGAAG+AGG + chr4_2:32444494-32444513 None:intergenic 25.0%
!!! AATTTCATGACTTGTTCAAT+TGG - chr4_2:32444919-32444938 Msa0598160:intron 25.0%
!!! ATTTCATGACTTGTTCAATT+GGG - chr4_2:32444920-32444939 Msa0598160:intron 25.0%
! TGACAAAGTAAAATATGCAA+AGG + chr4_2:32445018-32445037 None:intergenic 25.0%
!! ATATTTTACTTTGTCATGCA+TGG - chr4_2:32445022-32445041 Msa0598160:CDS 25.0%
!! TTTTTAATGTAGAATGAGGA+TGG + chr4_2:32445362-32445381 None:intergenic 25.0%
!!! ACTGTTTTTAATGTAGAATG+AGG + chr4_2:32445366-32445385 None:intergenic 25.0%
! AATAGTATACACAAGGAAAA+GGG + chr4_2:32445662-32445681 None:intergenic 25.0%
! AATCATCAATAGTATACACA+AGG + chr4_2:32445669-32445688 None:intergenic 25.0%
!!! CTCGTGAATTTATTTTTTTG+CGG - chr4_2:32445764-32445783 Msa0598160:intron 25.0%
!!! TCGTGAATTTATTTTTTTGC+GGG - chr4_2:32445765-32445784 Msa0598160:intron 25.0%
! TGACTTCATAAATGAATACA+AGG - chr4_2:32445988-32446007 Msa0598160:intron 25.0%
! TTCTGTAGTTATGCTTAATA+GGG + chr4_2:32446407-32446426 None:intergenic 25.0%
! ATATAAGTCTTGGGATATTA+AGG + chr4_2:32446505-32446524 None:intergenic 25.0%
!! TTAAGTTTTCTCATCATCAA+AGG - chr4_2:32446545-32446564 Msa0598160:intron 25.0%
!! TAAGTTTTCTCATCATCAAA+GGG - chr4_2:32446546-32446565 Msa0598160:intron 25.0%
! TTGTAACTTCTCTCATAAAT+TGG - chr4_2:32446671-32446690 Msa0598160:intron 25.0%
! ATTACCTATATCTTCTAAAC+CGG + chr4_2:32447043-32447062 None:intergenic 25.0%
!!! ATCTTACTGAATTTGTTGTT+AGG - chr4_2:32447061-32447080 Msa0598160:intron 25.0%
! TGTTTGAATTGAACATTCAT+AGG - chr4_2:32447253-32447272 Msa0598160:intron 25.0%
!! ATACAAATTAACTTGGCAAA+GGG + chr4_2:32447301-32447320 None:intergenic 25.0%
!!! CTGTTAAAGAGTGTTAAATT+TGG - chr4_2:32447433-32447452 Msa0598160:intron 25.0%
! TCAAAACGTTTGATAAATCT+TGG - chr4_2:32447628-32447647 Msa0598160:intron 25.0%
! TTATAGTATTTCATTTCGGA+GGG + chr4_2:32447819-32447838 None:intergenic 25.0%
! TTGAATTGTGTTGTTAGCTA+TGG - chr4_2:32443250-32443269 Msa0598160:three_prime_UTR 30.0%
CTAAAATAAGCCAATCCAAA+CGG + chr4_2:32443632-32443651 None:intergenic 30.0%
AACTTATGAACTATGAAGCA+TGG - chr4_2:32443734-32443753 Msa0598160:three_prime_UTR 30.0%
TATTCATAAGCTATGAAGCA+CGG + chr4_2:32443903-32443922 None:intergenic 30.0%
TTCATAAGCTCAATCTAAAC+AGG - chr4_2:32443987-32444006 Msa0598160:three_prime_UTR 30.0%
!! GCAATGTTTTTGAAAATCAC+GGG + chr4_2:32444033-32444052 None:intergenic 30.0%
TGAATTGACACAAAATTCCA+TGG + chr4_2:32444077-32444096 None:intergenic 30.0%
ACGAACAAAAAGTCAAAGAT+TGG + chr4_2:32444206-32444225 None:intergenic 30.0%
TAATACAGTAATTGACACCT+AGG + chr4_2:32444419-32444438 None:intergenic 30.0%
AAGTTCATTCTGTTTCATGT+AGG + chr4_2:32444450-32444469 None:intergenic 30.0%
CTTATTAACTGTGATAGCTT+TGG - chr4_2:32444510-32444529 Msa0598160:three_prime_UTR 30.0%
!! CTTACTTTTCTTTCAACTTC+GGG + chr4_2:32444602-32444621 None:intergenic 30.0%
!! GCTTACTTTTCTTTCAACTT+CGG + chr4_2:32444603-32444622 None:intergenic 30.0%
!! TTAGTTTTCAGACAGTAATC+AGG + chr4_2:32444725-32444744 None:intergenic 30.0%
!! TTTCATGACTTGTTCAATTG+GGG - chr4_2:32444921-32444940 Msa0598160:intron 30.0%
!! CTTTTAAAGGGAAGCAATAT+TGG + chr4_2:32444987-32445006 None:intergenic 30.0%
AACATATGCCTCTGATAATT+TGG - chr4_2:32445053-32445072 Msa0598160:CDS 30.0%
! CTTTATTTATCGGCATATCA+TGG + chr4_2:32445154-32445173 None:intergenic 30.0%
AAACTCAGTTACACATTTAC+GGG + chr4_2:32445208-32445227 None:intergenic 30.0%
GAAACTCAGTTACACATTTA+CGG + chr4_2:32445209-32445228 None:intergenic 30.0%
!! TGTTTTCTGGTAATAATCAC+AGG - chr4_2:32445416-32445435 Msa0598160:CDS 30.0%
CAATAGTATACACAAGGAAA+AGG + chr4_2:32445663-32445682 None:intergenic 30.0%
ACAAGTTCATTTCTACGATT+GGG + chr4_2:32445709-32445728 None:intergenic 30.0%
!!! CGTGAATTTATTTTTTTGCG+GGG - chr4_2:32445766-32445785 Msa0598160:intron 30.0%
!! TGAAAAAGTGTTAATGCTTC+AGG - chr4_2:32445850-32445869 Msa0598160:intron 30.0%
! ATCTTCTTTTCAGATTGCTA+AGG - chr4_2:32446083-32446102 Msa0598160:intron 30.0%
TCTGTAGTTATGCTTAATAG+GGG + chr4_2:32446406-32446425 None:intergenic 30.0%
CTTCTGTAGTTATGCTTAAT+AGG + chr4_2:32446408-32446427 None:intergenic 30.0%
CTATTAAGCATAACTACAGA+AGG - chr4_2:32446406-32446425 Msa0598160:intron 30.0%
! CTTTCTTTACATGCATTTTC+TGG - chr4_2:32446750-32446769 Msa0598160:intron 30.0%
ATGTGAATCTTATTACCTTG+AGG - chr4_2:32446868-32446887 Msa0598160:intron 30.0%
TGTGAATCTTATTACCTTGA+GGG - chr4_2:32446869-32446888 Msa0598160:intron 30.0%
AATTATGAGTATGAGTACCA+TGG + chr4_2:32447099-32447118 None:intergenic 30.0%
! AGTAAAACTGCTAAGTTTTG+AGG + chr4_2:32447153-32447172 None:intergenic 30.0%
!! CAGTTTTACTTTTGTCCAAT+TGG - chr4_2:32447163-32447182 Msa0598160:intron 30.0%
! GATACAAATTAACTTGGCAA+AGG + chr4_2:32447302-32447321 None:intergenic 30.0%
ATGAAAAACTGTCATTGAAC+TGG - chr4_2:32447338-32447357 Msa0598160:intron 30.0%
TGAAAAACTGTCATTGAACT+GGG - chr4_2:32447339-32447358 Msa0598160:intron 30.0%
TTTAATTGCTAGATAGCTTC+TGG - chr4_2:32447492-32447511 Msa0598160:CDS 30.0%
AGTTATGTTACATTCTCAAC+TGG - chr4_2:32447602-32447621 Msa0598160:intron 30.0%
AATGAAATCACGCAAGATAA+GGG + chr4_2:32447746-32447765 None:intergenic 30.0%
AAATGAAATCACGCAAGATA+AGG + chr4_2:32447747-32447766 None:intergenic 30.0%
CTTATAGTATTTCATTTCGG+AGG + chr4_2:32447820-32447839 None:intergenic 30.0%
CTCCGAAATGAAATACTATA+AGG - chr4_2:32447818-32447837 Msa0598160:five_prime_UTR 30.0%
GGAAGTTTGTGGTTTCTATA+TGG - chr4_2:32443444-32443463 Msa0598160:three_prime_UTR 35.0%
GTTACAAATGAGAATGAGGA+AGG - chr4_2:32443597-32443616 Msa0598160:three_prime_UTR 35.0%
!! TTAACTGTGATAGCTTTGGT+TGG - chr4_2:32444514-32444533 Msa0598160:three_prime_UTR 35.0%
! AACTTCGGGTCATGTATTTT+CGG + chr4_2:32444588-32444607 None:intergenic 35.0%
AAAGGGAAGCAATATTGGTA+CGG + chr4_2:32444982-32445001 None:intergenic 35.0%
TACGCATACCAAATTATCAG+AGG + chr4_2:32445064-32445083 None:intergenic 35.0%
!! TGCTCAGTTTTGTGAGAAAT+TGG - chr4_2:32445318-32445337 Msa0598160:intron 35.0%
!! CAGTTTTGTGAGAAATTGGT+AGG - chr4_2:32445322-32445341 Msa0598160:intron 35.0%
! CTGATGTTCTTCATGTTTTC+TGG - chr4_2:32445403-32445422 Msa0598160:CDS 35.0%
TTGGATAGAAGAGTAAAACG+TGG - chr4_2:32445447-32445466 Msa0598160:CDS 35.0%
GGAGAAAATAAAGAACCTTC+TGG - chr4_2:32445554-32445573 Msa0598160:intron 35.0%
CAAGTTCATTTCTACGATTG+GGG + chr4_2:32445708-32445727 None:intergenic 35.0%
CACAAGTTCATTTCTACGAT+TGG + chr4_2:32445710-32445729 None:intergenic 35.0%
! TTTTCAGATTGCTAAGGAGA+AGG - chr4_2:32446089-32446108 Msa0598160:intron 35.0%
AGGAAGAAGAAAGATTGACT+CGG - chr4_2:32446115-32446134 Msa0598160:intron 35.0%
AGAAGAGCGAAGAAAACAAA+AGG - chr4_2:32446149-32446168 Msa0598160:intron 35.0%
ATCGTGATAAAGATCGAGAT+AGG - chr4_2:32446223-32446242 Msa0598160:intron 35.0%
TATCGAGAAATTCCACTACT+TGG + chr4_2:32446451-32446470 None:intergenic 35.0%
!!! GATGGTTTACTCTTGTTTTG+AGG - chr4_2:32446841-32446860 Msa0598160:intron 35.0%
TATTACCTTGAGGGAAAGAT+TGG - chr4_2:32446878-32446897 Msa0598160:intron 35.0%
AAATACCAATCTTTCCCTCA+AGG + chr4_2:32446886-32446905 None:intergenic 35.0%
!! AAGTTGATATAAACCAGCAC+AGG - chr4_2:32446960-32446979 Msa0598160:intron 35.0%
GACATTGAACTACAATCTGA+AGG - chr4_2:32447015-32447034 Msa0598160:intron 35.0%
!!! AAAACTGCTAAGTTTTGAGG+TGG + chr4_2:32447150-32447169 None:intergenic 35.0%
GAATTGAACATTCATAGGAC+TGG - chr4_2:32447258-32447277 Msa0598160:intron 35.0%
TTCATAGGACTGGAAAATAC+AGG - chr4_2:32447268-32447287 Msa0598160:intron 35.0%
GACTGGAAAATACAGGTATT+TGG - chr4_2:32447275-32447294 Msa0598160:intron 35.0%
CAAACAAGTTATTGTGCGAT+TGG - chr4_2:32447391-32447410 Msa0598160:intron 35.0%
!! GAGTGTTAAATTTGGTGTTC+AGG - chr4_2:32447441-32447460 Msa0598160:intron 35.0%
CGTTTGATAAATCTTGGTAG+TGG - chr4_2:32447634-32447653 Msa0598160:intron 35.0%
TAGTGGTCATATGCATACTT+TGG - chr4_2:32447651-32447670 Msa0598160:intron 35.0%
!!! GTCGCTCATTTTTATTTTCG+AGG + chr4_2:32447706-32447725 None:intergenic 35.0%
AAAAGAGATAGAGCGAAACG+AGG - chr4_2:32443100-32443119 Msa0598160:three_prime_UTR 40.0%
! AGATCGATTTATCGAGTGAG+TGG + chr4_2:32443344-32443363 None:intergenic 40.0%
ACTTGACTGAGGAAGAAAGA+AGG - chr4_2:32443392-32443411 Msa0598160:three_prime_UTR 40.0%
CTTGACTGAGGAAGAAAGAA+GGG - chr4_2:32443393-32443412 Msa0598160:three_prime_UTR 40.0%
TTGACTGAGGAAGAAAGAAG+GGG - chr4_2:32443394-32443413 Msa0598160:three_prime_UTR 40.0%
GGGTTACAAAGAAGTGAGTT+GGG - chr4_2:32443414-32443433 Msa0598160:three_prime_UTR 40.0%
ATGAGAATGAGGAAGGACTT+TGG - chr4_2:32443604-32443623 Msa0598160:three_prime_UTR 40.0%
TGAGAATGAGGAAGGACTTT+GGG - chr4_2:32443605-32443624 Msa0598160:three_prime_UTR 40.0%
TACAAGTGTTAGTGTCGTGT+CGG - chr4_2:32443837-32443856 Msa0598160:three_prime_UTR 40.0%
GTAGTGTGATATTGCATCCA+TGG - chr4_2:32444057-32444076 Msa0598160:three_prime_UTR 40.0%
! CAAAAAGTCAAAGATTGGCC+AGG + chr4_2:32444201-32444220 None:intergenic 40.0%
TAACGTGTTTAAACCGATGC+AGG - chr4_2:32444555-32444574 Msa0598160:CDS 40.0%
! ACTTCGGGTCATGTATTTTC+GGG + chr4_2:32444587-32444606 None:intergenic 40.0%
! GTGTTGCTCTTCTATCTATG+TGG - chr4_2:32444791-32444810 Msa0598160:CDS 40.0%
GTTAAGCTATCTTAGTGCTG+TGG - chr4_2:32444813-32444832 Msa0598160:CDS 40.0%
!!! TCAGTTTTGAGAATTCCCCA+AGG - chr4_2:32445260-32445279 Msa0598160:intron 40.0%
! GCAAGATCGGCTTCAAATTT+AGG + chr4_2:32445301-32445320 None:intergenic 40.0%
CTCACAAAACTGAGCAAGAT+CGG + chr4_2:32445314-32445333 None:intergenic 40.0%
GAACATCAGCATACAAGCAA+AGG + chr4_2:32445392-32445411 None:intergenic 40.0%
CTGGTAATAATCACAGGTGA+TGG - chr4_2:32445422-32445441 Msa0598160:CDS 40.0%
!! ATAATCACAGGTGATGGACT+TGG - chr4_2:32445428-32445447 Msa0598160:CDS 40.0%
ACGAGAACGTCTTAATCAAG+AGG - chr4_2:32445470-32445489 Msa0598160:CDS 40.0%
AGAACGTCTTAATCAAGAGG+TGG - chr4_2:32445473-32445492 Msa0598160:CDS 40.0%
!! TCAGATTTTTCAGCTGTCAG+TGG + chr4_2:32445516-32445535 None:intergenic 40.0%
!!! GGTTCTTTATTTTCTCCTCC+AGG + chr4_2:32445551-32445570 None:intergenic 40.0%
! GAGATTCAACTTGTTCCAGA+AGG + chr4_2:32445572-32445591 None:intergenic 40.0%
! CTGGAACAAGTTGAATCTCT+TGG - chr4_2:32445573-32445592 Msa0598160:intron 40.0%
TTGAATCTCTTGGTGAAGCT+GGG - chr4_2:32445583-32445602 Msa0598160:intron 40.0%
AGCTGAAGCTCTTATGAGAA+AGG - chr4_2:32445617-32445636 Msa0598160:intron 40.0%
TATACACAAGGAAAAGGGTG+TGG + chr4_2:32445657-32445676 None:intergenic 40.0%
ATTCACGAGAATCTCAGTCA+CGG + chr4_2:32445753-32445772 None:intergenic 40.0%
!! TTGCGGGGTATTTTTCTTTC+AGG - chr4_2:32445781-32445800 Msa0598160:intron 40.0%
GGAGACACTTAATACTGAGA+AGG - chr4_2:32445805-32445824 Msa0598160:intron 40.0%
AATGCTTCAGGAGAAGAAGA+TGG - chr4_2:32445862-32445881 Msa0598160:intron 40.0%
! GGAAGAAGAAAGATTGACTC+GGG - chr4_2:32446116-32446135 Msa0598160:intron 40.0%
!! AAGATTGACTCGGGAAAAAG+AGG - chr4_2:32446125-32446144 Msa0598160:intron 40.0%
ACGGAGTGATTCAAGTGATA+GGG - chr4_2:32446194-32446213 Msa0598160:intron 40.0%
TAGGTACAGAGATAGAGACT+CGG - chr4_2:32446254-32446273 Msa0598160:intron 40.0%
GAAAGATCTCGGGAATATGA+AGG - chr4_2:32446282-32446301 Msa0598160:intron 40.0%
! ATGGTTTCTAGGTTGAGGAA+CGG - chr4_2:32446333-32446352 Msa0598160:intron 40.0%
AGGTTGAGGAACGGAAAAAA+TGG - chr4_2:32446342-32446361 Msa0598160:intron 40.0%
GAAAAAATGGAAGCAGAGAC+AGG - chr4_2:32446355-32446374 Msa0598160:CDS 40.0%
!! AAAGCTCTGAGATGGGAAAA+AGG + chr4_2:32446580-32446599 None:intergenic 40.0%
!! TCTCAAGAAAGCTCTGAGAT+GGG + chr4_2:32446587-32446606 None:intergenic 40.0%
ATTAATGGAGAAAAGGGTCG+AGG - chr4_2:32446634-32446653 Msa0598160:intron 40.0%
TGATTGTCATTGCCGCAAAA+GGG - chr4_2:32446818-32446837 Msa0598160:intron 40.0%
CAGCATTTATAAACCTGTGC+TGG + chr4_2:32446976-32446995 None:intergenic 40.0%
AGTATGAGTACCATGGATTC+GGG + chr4_2:32447092-32447111 None:intergenic 40.0%
GAGTATGAGTACCATGGATT+CGG + chr4_2:32447093-32447112 None:intergenic 40.0%
! TGTCCAATTGGTAACTCGTA+CGG - chr4_2:32447175-32447194 Msa0598160:intron 40.0%
ATTCCGTACGAGTTACCAAT+TGG + chr4_2:32447181-32447200 None:intergenic 40.0%
! AATTGGTAACTCGTACGGAA+TGG - chr4_2:32447180-32447199 Msa0598160:intron 40.0%
ACAAGTTATTGTGCGATTGG+AGG - chr4_2:32447394-32447413 Msa0598160:intron 40.0%
ATTGTGCGATTGGAGGTAAT+TGG - chr4_2:32447401-32447420 Msa0598160:intron 40.0%
! TCTTCTCTTGTTTGAGCTGT+TGG - chr4_2:32447788-32447807 Msa0598160:five_prime_UTR 40.0%
CTAGGGTTTCTTGTGCTATG+CGG + chr4_2:32443169-32443188 None:intergenic 45.0%
TTCAGCTCGAAACTTGACTG+AGG - chr4_2:32443381-32443400 Msa0598160:three_prime_UTR 45.0%
GGGGTTACAAAGAAGTGAGT+TGG - chr4_2:32443413-32443432 Msa0598160:three_prime_UTR 45.0%
! AGAAGTGAGTTGGGACGATA+AGG - chr4_2:32443423-32443442 Msa0598160:three_prime_UTR 45.0%
TGGGACGATAAGGAAGTTTG+TGG - chr4_2:32443433-32443452 Msa0598160:three_prime_UTR 45.0%
TGTTGACGAAGAGATCGTGA+GGG + chr4_2:32443480-32443499 None:intergenic 45.0%
TGAAGCATGGATACAGACAC+TGG - chr4_2:32443747-32443766 Msa0598160:three_prime_UTR 45.0%
GATTAGGTGTGTCCTGTAGT+CGG + chr4_2:32443870-32443889 None:intergenic 45.0%
TATGAAGCACGGATACTCCT+CGG + chr4_2:32443892-32443911 None:intergenic 45.0%
! GGGCTGCAGTTGATTTCAAA+GGG + chr4_2:32444013-32444032 None:intergenic 45.0%
TCAACCTAGACAGTCAATCC+TGG - chr4_2:32444114-32444133 Msa0598160:three_prime_UTR 45.0%
TTTGCCAGGATTGACTGTCT+AGG + chr4_2:32444121-32444140 None:intergenic 45.0%
ATGGGTAGCATACGCTCAAA+AGG + chr4_2:32444883-32444902 None:intergenic 45.0%
! GACTTGTTCAATTGGGGCTA+TGG - chr4_2:32444927-32444946 Msa0598160:intron 45.0%
TTGGTACGGTGCACTTCTAA+TGG + chr4_2:32444968-32444987 None:intergenic 45.0%
ACAATAGAGCAACCATGTGC+AGG + chr4_2:32445104-32445123 None:intergenic 45.0%
GAATGAGGATGGCAACAGAT+AGG + chr4_2:32445351-32445370 None:intergenic 45.0%
!! GATTTTTCAGCTGTCAGTGG+TGG + chr4_2:32445513-32445532 None:intergenic 45.0%
ATCTGAACAGTTGTCTGTCC+TGG - chr4_2:32445530-32445549 Msa0598160:intron 45.0%
GTTGAATCTCTTGGTGAAGC+TGG - chr4_2:32445582-32445601 Msa0598160:intron 45.0%
!! CGGGGTATTTTTCTTTCAGG+TGG - chr4_2:32445784-32445803 Msa0598160:intron 45.0%
GATTGCTAAGGAGAAGGCTA+AGG - chr4_2:32446095-32446114 Msa0598160:intron 45.0%
GCGAAGAAAACAAAAGGAGC+AGG - chr4_2:32446155-32446174 Msa0598160:intron 45.0%
AGGATCCTGAGAGAAAGAGA+CGG - chr4_2:32446175-32446194 Msa0598160:intron 45.0%
GACGGAGTGATTCAAGTGAT+AGG - chr4_2:32446193-32446212 Msa0598160:intron 45.0%
ACTCGGATCGTGAAAGATCT+CGG - chr4_2:32446271-32446290 Msa0598160:intron 45.0%
TCTCGGGAATATGAAGGTAG+AGG - chr4_2:32446288-32446307 Msa0598160:intron 45.0%
AGGTAATCGAGATCGAGGAA+GGG - chr4_2:32446308-32446327 Msa0598160:intron 45.0%
GTTGTGTTTGCTCCAAGTAG+TGG - chr4_2:32446436-32446455 Msa0598160:intron 45.0%
!! GTCTCAAGAAAGCTCTGAGA+TGG + chr4_2:32446588-32446607 None:intergenic 45.0%
GTGATTGTCATTGCCGCAAA+AGG - chr4_2:32446817-32446836 Msa0598160:intron 45.0%
GATTGTCATTGCCGCAAAAG+GGG - chr4_2:32446819-32446838 Msa0598160:intron 45.0%
! GAGTAAACCATCCCCTTTTG+CGG + chr4_2:32446833-32446852 None:intergenic 45.0%
! GAACTACAATCTGAAGGCAC+CGG - chr4_2:32447021-32447040 Msa0598160:intron 45.0%
!! GGCACCGGTTTAGAAGATAT+AGG - chr4_2:32447036-32447055 Msa0598160:intron 45.0%
TTAGGCATTTCCCGAATCCA+TGG - chr4_2:32447079-32447098 Msa0598160:intron 45.0%
ACTGTCATTGAACTGGGCTT+TGG - chr4_2:32447345-32447364 Msa0598160:intron 45.0%
CTGTCATTGAACTGGGCTTT+GGG - chr4_2:32447346-32447365 Msa0598160:intron 45.0%
CTTCTGGACATGATATGTGC+AGG - chr4_2:32447508-32447527 Msa0598160:CDS 45.0%
GTAAATAACCGCGTCGTGAT+GGG - chr4_2:32447530-32447549 Msa0598160:CDS 45.0%
!!! AAGTTTTTTTTTTTTTTTTA+CGG + chr4_2:32447219-32447238 None:intergenic 5.0%
! GTGTTGACGAAGAGATCGTG+AGG + chr4_2:32443481-32443500 None:intergenic 50.0%
GACTTTGGGTCCGTTTGGAT+TGG - chr4_2:32443619-32443638 Msa0598160:three_prime_UTR 50.0%
TACAGGACACACCTAATCCG+AGG - chr4_2:32443872-32443891 Msa0598160:three_prime_UTR 50.0%
! CGGGCTGCAGTTGATTTCAA+AGG + chr4_2:32444014-32444033 None:intergenic 50.0%
CCTGGCAAATCCCAAAGTAG+CGG - chr4_2:32444132-32444151 Msa0598160:three_prime_UTR 50.0%
! TCAGGCTGATCCGCTACTTT+GGG + chr4_2:32444145-32444164 None:intergenic 50.0%
!! AAAGTAGCGGATCAGCCTGA+GGG - chr4_2:32444145-32444164 Msa0598160:three_prime_UTR 50.0%
AGGTAGTCAATCCCGGATAG+CGG + chr4_2:32444399-32444418 None:intergenic 50.0%
CTATCCGGGATTGACTACCT+AGG - chr4_2:32444399-32444418 Msa0598160:intron 50.0%
GACACCTAGGTAGTCAATCC+CGG + chr4_2:32444406-32444425 None:intergenic 50.0%
CACGTATGCATCATGCCTTG+GGG + chr4_2:32445278-32445297 None:intergenic 50.0%
GCACGTATGCATCATGCCTT+GGG + chr4_2:32445279-32445298 None:intergenic 50.0%
TGAGGATGGCAACAGATAGG+TGG + chr4_2:32445348-32445367 None:intergenic 50.0%
! TTTTCAGCTGTCAGTGGTGG+CGG + chr4_2:32445510-32445529 None:intergenic 50.0%
TGAACAGTTGTCTGTCCTGG+AGG - chr4_2:32445533-32445552 Msa0598160:intron 50.0%
ATCTCTTGGTGAAGCTGGGA+AGG - chr4_2:32445587-32445606 Msa0598160:intron 50.0%
GAAGAAGATGGCACTCTGTG+AGG - chr4_2:32445874-32445893 Msa0598160:intron 50.0%
ATGGCACTCTGTGAGGTATG+TGG - chr4_2:32445881-32445900 Msa0598160:intron 50.0%
GGTATGTGGTTCGTTTCTCG+TGG - chr4_2:32445895-32445914 Msa0598160:intron 50.0%
AGAACTCAGTCTCATGTCGC+AGG - chr4_2:32445935-32445954 Msa0598160:intron 50.0%
! GGAAAGCAGCATGTTGGCTA+TGG - chr4_2:32445956-32445975 Msa0598160:intron 50.0%
! GCAGCATGTTGGCTATGGTA+TGG - chr4_2:32445961-32445980 Msa0598160:intron 50.0%
TCACTCCGTCTCTTTCTCTC+AGG + chr4_2:32446183-32446202 None:intergenic 50.0%
ATCGAGATAGGCAGCGTGAT+AGG - chr4_2:32446235-32446254 Msa0598160:intron 50.0%
CTCGGATCGTGAAAGATCTC+GGG - chr4_2:32446272-32446291 Msa0598160:intron 50.0%
GGTAGAGGTAATCGAGATCG+AGG - chr4_2:32446303-32446322 Msa0598160:intron 50.0%
GAGGTAATCGAGATCGAGGA+AGG - chr4_2:32446307-32446326 Msa0598160:intron 50.0%
GGTAATCGAGATCGAGGAAG+GGG - chr4_2:32446309-32446328 Msa0598160:intron 50.0%
GTAATCGAGATCGAGGAAGG+GGG - chr4_2:32446310-32446329 Msa0598160:intron 50.0%
GCAGAGACAGGTACCACAAT+CGG - chr4_2:32446367-32446386 Msa0598160:CDS 50.0%
AACGTGATCTGCTCCGATTG+TGG + chr4_2:32446383-32446402 None:intergenic 50.0%
ATGGAGAAAAGGGTCGAGGT+AGG - chr4_2:32446638-32446657 Msa0598160:intron 50.0%
GGTAAATAACCGCGTCGTGA+TGG - chr4_2:32447529-32447548 Msa0598160:CDS 50.0%
! TTGTTTCTCCCATCACGACG+CGG + chr4_2:32447541-32447560 None:intergenic 50.0%
!! GCTATGCGGTGCTGTGTTGT+GGG + chr4_2:32443155-32443174 None:intergenic 55.0%
!! TGCTATGCGGTGCTGTGTTG+TGG + chr4_2:32443156-32443175 None:intergenic 55.0%
AGCTCTCCTCGACGAACTCA+TGG - chr4_2:32443283-32443302 Msa0598160:three_prime_UTR 55.0%
GCTCTCCTCGACGAACTCAT+GGG - chr4_2:32443284-32443303 Msa0598160:three_prime_UTR 55.0%
CTGAACCCATGAGTTCGTCG+AGG + chr4_2:32443292-32443311 None:intergenic 55.0%
CTCGACGAACTCATGGGTTC+AGG - chr4_2:32443290-32443309 Msa0598160:three_prime_UTR 55.0%
GTCAACACGCGCAGTGATCT+CGG - chr4_2:32443493-32443512 Msa0598160:three_prime_UTR 55.0%
GGAAGGACTTTGGGTCCGTT+TGG - chr4_2:32443614-32443633 Msa0598160:three_prime_UTR 55.0%
GCACGGATACTCCTCGGATT+AGG + chr4_2:32443886-32443905 None:intergenic 55.0%
!! CCGCTACTTTGGGATTTGCC+AGG + chr4_2:32444135-32444154 None:intergenic 55.0%
CTCAGGCTGATCCGCTACTT+TGG + chr4_2:32444146-32444165 None:intergenic 55.0%
!! CAAAGTAGCGGATCAGCCTG+AGG - chr4_2:32444144-32444163 Msa0598160:three_prime_UTR 55.0%
CAGCCTGAGGGAAATTGCGA+CGG - chr4_2:32444157-32444176 Msa0598160:three_prime_UTR 55.0%
TCTCCGTCGCAATTTCCCTC+AGG + chr4_2:32444163-32444182 None:intergenic 55.0%
TGAGGGAAATTGCGACGGAG+AGG - chr4_2:32444162-32444181 Msa0598160:three_prime_UTR 55.0%
AGAGGATTTCGTCGCGATCC+TGG - chr4_2:32444180-32444199 Msa0598160:three_prime_UTR 55.0%
! AGATCCCGCTACCCCACTTT+TGG - chr4_2:32444357-32444376 Msa0598160:intron 55.0%
!! GATCCCGCTACCCCACTTTT+GGG - chr4_2:32444358-32444377 Msa0598160:intron 55.0%
!! ATCCCGCTACCCCACTTTTG+GGG - chr4_2:32444359-32444378 Msa0598160:intron 55.0%
AGCAGTCGACCCCAAAAGTG+GGG + chr4_2:32444371-32444390 None:intergenic 55.0%
GAGCAGTCGACCCCAAAAGT+GGG + chr4_2:32444372-32444391 None:intergenic 55.0%
TTTCGGGCAAGCTCCTGCAT+CGG + chr4_2:32444571-32444590 None:intergenic 55.0%
TAGAGCAACCATGTGCAGGC+AGG + chr4_2:32445100-32445119 None:intergenic 55.0%
GGCACGTATGCATCATGCCT+TGG + chr4_2:32445280-32445299 None:intergenic 55.0%
GTCGCAGGAAAGCAGCATGT+TGG - chr4_2:32445950-32445969 Msa0598160:intron 55.0%
GAGGAAGGGGGATGGTTTCT+AGG - chr4_2:32446322-32446341 Msa0598160:intron 55.0%
! GGGGGATGGTTTCTAGGTTG+AGG - chr4_2:32446328-32446347 Msa0598160:intron 55.0%
GTCATTGCCGCAAAAGGGGA+TGG - chr4_2:32446823-32446842 Msa0598160:intron 55.0%
GTCGGTGCATGTCCGACTAC+AGG - chr4_2:32443855-32443874 Msa0598160:three_prime_UTR 60.0%
GACCCCAAAAGTGGGGTAGC+GGG + chr4_2:32444364-32444383 None:intergenic 60.0%
CGACCCCAAAAGTGGGGTAG+CGG + chr4_2:32444365-32444384 None:intergenic 60.0%
GGAGCAGTCGACCCCAAAAG+TGG + chr4_2:32444373-32444392 None:intergenic 60.0%
ATGTGCAGGCAGGCAACTGC+AGG + chr4_2:32445090-32445109 None:intergenic 60.0%
TGCAGTTGCCTGCCTGCACA+TGG - chr4_2:32445089-32445108 Msa0598160:CDS 60.0%
TCGAGATCGAGGAAGGGGGA+TGG - chr4_2:32446314-32446333 Msa0598160:intron 60.0%
! GTCAATCCCGGATAGCGGCG+CGG + chr4_2:32444394-32444413 None:intergenic 65.0%
!! TCAGCTGTCAGTGGTGGCGG+TGG + chr4_2:32445507-32445526 None:intergenic 65.0%
GACTGCTCCGCGCCGCTATC+CGG - chr4_2:32444384-32444403 Msa0598160:intron 70.0%
ACTGCTCCGCGCCGCTATCC+GGG - chr4_2:32444385-32444404 Msa0598160:intron 70.0%
!! GCTGTCAGTGGTGGCGGTGG+TGG + chr4_2:32445504-32445523 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 32443058 32447910 32443058 ID=Msa0598160;Name=Msa0598160
chr4_2 mRNA 32443058 32447910 32443058 ID=Msa0598160-mRNA-1;Parent=Msa0598160;Name=Msa0598160-mRNA-1;_AED=0.03;_eAED=0.03;_QI=211|1|1|1|0.85|0.75|8|1379|344
chr4_2 exon 32443058 32444374 32443058 ID=Msa0598160-mRNA-1:exon:7891;Parent=Msa0598160-mRNA-1
chr4_2 exon 32444472 32444872 32444472 ID=Msa0598160-mRNA-1:exon:7890;Parent=Msa0598160-mRNA-1
chr4_2 exon 32444959 32445165 32444959 ID=Msa0598160-mRNA-1:exon:7889;Parent=Msa0598160-mRNA-1
chr4_2 exon 32445330 32445530 32445330 ID=Msa0598160-mRNA-1:exon:7888;Parent=Msa0598160-mRNA-1
chr4_2 exon 32445629 32445704 32445629 ID=Msa0598160-mRNA-1:exon:7887;Parent=Msa0598160-mRNA-1
chr4_2 exon 32446352 32446391 32446352 ID=Msa0598160-mRNA-1:exon:7886;Parent=Msa0598160-mRNA-1
chr4_2 exon 32447454 32447582 32447454 ID=Msa0598160-mRNA-1:exon:7885;Parent=Msa0598160-mRNA-1
chr4_2 exon 32447657 32447910 32447657 ID=Msa0598160-mRNA-1:exon:7884;Parent=Msa0598160-mRNA-1
chr4_2 five_prime_UTR 32447700 32447910 32447700 ID=Msa0598160-mRNA-1:five_prime_utr;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32447657 32447699 32447657 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32447454 32447582 32447454 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32446352 32446391 32446352 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32445629 32445704 32445629 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32445330 32445530 32445330 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32444959 32445165 32444959 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 CDS 32444534 32444872 32444534 ID=Msa0598160-mRNA-1:cds;Parent=Msa0598160-mRNA-1
chr4_2 three_prime_UTR 32444472 32444533 32444472 ID=Msa0598160-mRNA-1:three_prime_utr;Parent=Msa0598160-mRNA-1
chr4_2 three_prime_UTR 32443058 32444374 32443058 ID=Msa0598160-mRNA-1:three_prime_utr;Parent=Msa0598160-mRNA-1
Gene Sequence

>Msa0598160

ATGGACGCTCAAAGAGCTCTCCTCGACGAACTCATGGGTTCAGCTCGAAACTTGACTGAGGAAGAAAGAAGGGGTTACAAAGAAGTGAGTTGGGACGATAAGGAAGTTTGTGGTTTCTATATGGTTCGCTTTTGCCCTCACGATCTCTTCGTCAACACGCGCAGTGATCTCGGAGCTTGCCCGAAAATACATGACCCGAAGTTGAAAGAAAATTTTGAGAATTCCCCAAGGCATGATGCATACGTGCCTAAATTTGAAGCCGATCTTGCTCAGTTTTGTGAGAAATTGGTGATGGACTTGGATAGAAGAGTAAAACGTGGACGAGAACGTCTTAATCAAGAGGTGGAGCTACCACCACCGCCACCACTGACAGCTGAAAAATCTGAACAGTTGTCTGTCCTGGAGGAGAAAATAAAGAACCTTCTGGAACAAGTTGAATCTCTTGGTGAAGCTGGGAAGGTTGATGAAGCTGAAGCTCTTATGAGAAAGGTGGAGACACTTAATACTGAGAAGGCAGTCTTAACACAACCTCAAAATGAAAAAGTGTTAATGCTTCAGGAGAAGAAGATGGCACTCTGTGAGGTATGTGGTTCGTTTCTCGTGGCAAATGATGCTGCAGAAAGAACTCAGTCTCATGTCGCAGGAAAGCAGCATGTTGGCTATGGTATGGTTCGTGACTTCATAAATGAATACAAGATTGCTAAGGAGAAGGCTAAGGAAGAAGAAAGATTGACTCGGGAAAAAGAGGTAGAAGAGCGAAGAAAACAAAAGGAGCAGGATCCTGAGAGAAAGAGACGGAGTGATTCAAGTGATAGGGAGAAATATCGTGATAAAGATCGAGATAGGCAGCGTGATAGGTACAGAGATAGAGACTCGGATCGTGAAAGATCTCGGGAATATGAAGGTAGAGGTAATCGAGATCGAGGAAGGGGGATGGTTTCTAGGTTGAGGAACGGAAAAAATGGAAGCAGAGACAGGTACCACAATCGGAGCAGATCACGTTCCCCTATTAAGCATAACTACAGAAGGTCTTGA

Protein sequence

>Msa0598160

MDAQRALLDELMGSARNLTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGACPKIHDPKLKENFENSPRHDAYVPKFEADLAQFCEKLVMDLDRRVKRGRERLNQEVELPPPPPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNTEKAVLTQPQNEKVLMLQEKKMALCEVCGSFLVANDAAERTQSHVAGKQHVGYGMVRDFINEYKIAKEKAKEEERLTREKEVEERRKQKEQDPERKRRSDSSDREKYRDKDRDRQRDRYRDRDSDRERSREYEGRGNRDRGRGMVSRLRNGKNGSRDRYHNRSRSRSPIKHNYRRS*