AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0151180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151180 MtrunA17_Chr1g0159571 93.939 264 15 1 1 264 1 263 1.27e-162 451
Msa0151180 MtrunA17_Chr3g0125561 38.208 212 99 8 1 199 31 223 7.42e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0151180 AT1G76980.1 43.103 174 78 7 49 204 28 198 4.19e-28 108
Msa0151180 AT1G76980.2 43.103 174 78 7 49 204 28 198 7.98e-28 107
Msa0151180 AT1G21390.1 38.342 193 88 6 33 199 5 192 3.56e-26 103

Find 64 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACAAATTAATTTAATTT+TGG 0.088211 1_4:+13132337 Msa0151180:three_prime_UTR
ATTTGAGCTTCTAGAATTTA+TGG 0.120111 1_4:+13131989 Msa0151180:three_prime_UTR
GTATGTGTTCTCCACCTTTA+TGG 0.164256 1_4:+13129306 Msa0151180:CDS
TCAAATATACTAAAGTTATT+TGG 0.175860 1_4:+13132162 Msa0151180:three_prime_UTR
TTAGATGATCCCAAAGAAAT+TGG 0.202956 1_4:-13129620 None:intergenic
TGATAAGAAGAAAGAGTTAT+TGG 0.226827 1_4:+13129649 Msa0151180:CDS
TTGTATCGTCAATTCGGTTT+AGG 0.235420 1_4:-13132321 None:intergenic
AAGAGGTCAAAGAGAGTTAA+TGG 0.266398 1_4:+13129394 Msa0151180:CDS
AAGTATGCAAATATTGTATT+TGG 0.268036 1_4:+13132210 Msa0151180:three_prime_UTR
TGTATCGTCAATTCGGTTTA+GGG 0.270872 1_4:-13132320 None:intergenic
ATGGCTTGTGTCTTTGATTC+AGG 0.274722 1_4:-13129368 None:intergenic
GTAAGTTCATAGCTTGATTC+TGG 0.277190 1_4:-13129434 None:intergenic
AATTAGGGCTAGTAGAAATA+TGG 0.334807 1_4:+13129550 Msa0151180:CDS
TTACTCTTTGTTGTCCATAA+AGG 0.348229 1_4:-13129320 None:intergenic
ATTAATTTGTATCGTCAATT+CGG 0.348383 1_4:-13132327 None:intergenic
TTAGTATATTTGAAATACTT+TGG 0.358163 1_4:-13132152 None:intergenic
TGTATTCTATCATCAGAAAC+TGG 0.389778 1_4:-13129206 None:intergenic
CTCTCTTTGACCTCTTTCAA+TGG 0.402619 1_4:-13129387 None:intergenic
TCAAAGAGAGTTAATGGAAA+TGG 0.417465 1_4:+13129400 Msa0151180:CDS
GGTAACACTATTGTTATTGT+TGG 0.418413 1_4:-13129243 None:intergenic
TTCTGATGGATCTGTTAGTA+AGG 0.426899 1_4:+13129721 Msa0151180:CDS
AATTCGGTTTAGGGTACATT+TGG 0.432166 1_4:-13132311 None:intergenic
GGATTGGTGGAAGAAGAAAC+TGG 0.436996 1_4:+13129742 Msa0151180:CDS
AATGGTAGCATCAAAAGATA+TGG 0.453475 1_4:+13129824 Msa0151180:CDS
TAAACTATCACATCTCAATC+TGG 0.467481 1_4:-13132264 None:intergenic
GGCAACACTTAGAATGTGTT+TGG 0.469084 1_4:-13132077 None:intergenic
AAGAAATTGTGGGTTGGTAA+TGG 0.479830 1_4:-13129181 None:intergenic
CTCTTTGTTGTCCATAAAGG+TGG 0.488907 1_4:-13129317 None:intergenic
CCAAGAGCATCTGTTTCTGA+TGG 0.489074 1_4:+13129707 Msa0151180:CDS
ACTCCTGCTGCTACAACTAC+TGG 0.490793 1_4:-13129858 None:intergenic
AGAAACTGGAAAAGAAATTG+TGG 0.502575 1_4:-13129192 None:intergenic
GAACCAGTAGTTGTAGCAGC+AGG 0.516769 1_4:+13129855 Msa0151180:CDS
ATTTGTGATCTTCTTATGAA+AGG 0.520231 1_4:-13131930 None:intergenic
GATCTGTTAGTAAGGATTGG+TGG 0.520890 1_4:+13129729 Msa0151180:CDS
TAAAAGTAGTAGTAATTCAA+AGG 0.523482 1_4:+13129679 Msa0151180:CDS
CACCTTTCAATGTGTTGTAG+TGG 0.525522 1_4:+13128984 Msa0151180:five_prime_UTR
GAAACTGGAAAAGAAATTGT+GGG 0.525639 1_4:-13129191 None:intergenic
AGTGGTGTATCTAGTATGAA+TGG 0.534045 1_4:+13129806 Msa0151180:CDS
AAGACACAAGCCATTGAAAG+AGG 0.538043 1_4:+13129377 Msa0151180:CDS
CCATCAGAAACAGATGCTCT+TGG 0.545084 1_4:-13129707 None:intergenic
AACCACTACAACACATTGAA+AGG 0.548137 1_4:-13128986 None:intergenic
TTAGAATGTGTTTGGTTGAG+TGG 0.549905 1_4:-13132069 None:intergenic
GGGAGTAGTGGTTCAGAATG+TGG 0.556003 1_4:+13129764 Msa0151180:CDS
AAATTCTATCAGAGAAGTAA+TGG 0.567767 1_4:+13131949 Msa0151180:CDS
CTGGAAAAGAAATTGTGGGT+TGG 0.579799 1_4:-13129187 None:intergenic
GTAGCAGCAGGAGTAATAGC+AGG 0.581217 1_4:+13129867 Msa0151180:CDS
AGAAGAATATTGACAGTGGA+GGG 0.588979 1_4:+13129576 Msa0151180:CDS
ATGGATCTGTTAGTAAGGAT+TGG 0.591287 1_4:+13129726 Msa0151180:CDS
GGTTGGTAATGGTATCTTCG+TGG 0.594866 1_4:-13129170 None:intergenic
AAGAAGAAACTGGGGAGTAG+TGG 0.594902 1_4:+13129752 Msa0151180:CDS
GATTGGTGGAAGAAGAAACT+GGG 0.596215 1_4:+13129743 Msa0151180:CDS
GAATGTGTTTGGTTGAGTGG+TGG 0.601002 1_4:-13132066 None:intergenic
AAGAAGAATATTGACAGTGG+AGG 0.610321 1_4:+13129575 Msa0151180:CDS
AAATGAGTACTAGCAGATGT+TGG 0.610385 1_4:+13131907 Msa0151180:CDS
TTCTATCAGAGAAGTAATGG+TGG 0.617062 1_4:+13131952 Msa0151180:exon
GAGAGAAATCTAAATTCAAG+TGG 0.620963 1_4:+13132013 Msa0151180:three_prime_UTR
AAAGGTGGAGAACACATACC+AGG 0.623685 1_4:-13129302 None:intergenic
GATAAGAAGAATATTGACAG+TGG 0.625867 1_4:+13129572 Msa0151180:CDS
TACTTTGAAAGATCTTGTTG+AGG 0.634719 1_4:+13129454 Msa0151180:CDS
ATTGGTGGAAGAAGAAACTG+GGG 0.670609 1_4:+13129744 Msa0151180:CDS
GGTCATGTTGAAGATGAACC+TGG 0.675151 1_4:+13129284 Msa0151180:CDS
AGTAGTGGTTCAGAATGTGG+AGG 0.678513 1_4:+13129767 Msa0151180:CDS
TCATGTTGAAGAAAATAACA+AGG 0.690119 1_4:+13129481 Msa0151180:CDS
GGTGATCAAAGTGATCATAG+TGG 0.721338 1_4:+13129788 Msa0151180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTAAAATTATTAT+CGG + chr1_4:13131755-13131774 Msa0151180:intron 0.0%
!! TTTAATAAACTTAATTGATT+TGG + chr1_4:13131349-13131368 Msa0151180:intron 10.0%
!!! CAATAATAATGATAAATTTT+TGG + chr1_4:13131868-13131887 Msa0151180:intron 10.0%
!!! GATACAAATTAATTTAATTT+TGG + chr1_4:13132337-13132356 Msa0151180:three_prime_UTR 10.0%
!! TTTGTATATAAATGTTTGAA+TGG + chr1_4:13129946-13129965 Msa0151180:intron 15.0%
!!! GTATGTGATTAAATTTTATT+GGG - chr1_4:13130211-13130230 None:intergenic 15.0%
!!! AGTATGTGATTAAATTTTAT+TGG - chr1_4:13130212-13130231 None:intergenic 15.0%
!!! ACAAATTTAGTTATTTTTCA+TGG - chr1_4:13130943-13130962 None:intergenic 15.0%
!! CTAAATTTGTGTTAATTAAT+TGG + chr1_4:13130953-13130972 Msa0151180:intron 15.0%
!!! ACAAATTTAGTTATTTTTCA+TGG - chr1_4:13130943-13130962 None:intergenic 15.0%
!! AAAATTACATTTATAGTCAT+TGG + chr1_4:13131412-13131431 Msa0151180:intron 15.0%
!!! TTAGTATATTTGAAATACTT+TGG - chr1_4:13132155-13132174 None:intergenic 15.0%
!! TCAAATATACTAAAGTTATT+TGG + chr1_4:13132162-13132181 Msa0151180:three_prime_UTR 15.0%
!!! ATGAAGCTTTTTTAATTTCT+TGG - chr1_4:13128961-13128980 None:intergenic 20.0%
!!! TTTTGAAAGATTTTGAAAGA+GGG - chr1_4:13129059-13129078 None:intergenic 20.0%
!!! AATGATTTTTCCAATTTCTT+TGG + chr1_4:13129610-13129629 Msa0151180:CDS 20.0%
!!! ATGATTTTTCCAATTTCTTT+GGG + chr1_4:13129611-13129630 Msa0151180:CDS 20.0%
!! TAAAAGTAGTAGTAATTCAA+AGG + chr1_4:13129679-13129698 Msa0151180:CDS 20.0%
!!! CTATTGTAAGTTTTAGATTT+TGG + chr1_4:13130002-13130021 Msa0151180:intron 20.0%
!!! TCATCAAGATTTTTACATTT+TGG + chr1_4:13130290-13130309 Msa0151180:intron 20.0%
!!! AATTAGTACCATTTGAAATA+AGG - chr1_4:13130488-13130507 None:intergenic 20.0%
!! TTATTTCAAATGGTACTAAT+TGG + chr1_4:13130487-13130506 Msa0151180:intron 20.0%
!!! TAAATCAAGTCAAATTTTCA+AGG + chr1_4:13130769-13130788 Msa0151180:intron 20.0%
!!! GTTTTGTTTGTTTGTTTATT+AGG + chr1_4:13130832-13130851 Msa0151180:intron 20.0%
!! TAGTATACAATAGTGAAATA+AGG + chr1_4:13131121-13131140 Msa0151180:intron 20.0%
!! GTTGAAAAATATCATTCAAA+AGG - chr1_4:13131157-13131176 None:intergenic 20.0%
!! GTATTCATCAAAATTTACAT+AGG + chr1_4:13131190-13131209 Msa0151180:intron 20.0%
!! TGAATCTCATATAAATTTGA+TGG - chr1_4:13131218-13131237 None:intergenic 20.0%
!!! AGTACACTTTTTTCATTTAT+GGG - chr1_4:13131272-13131291 None:intergenic 20.0%
!!! AAGTACACTTTTTTCATTTA+TGG - chr1_4:13131273-13131292 None:intergenic 20.0%
!!! TGAAATTTGTTTGTTACTAT+TGG - chr1_4:13131805-13131824 None:intergenic 20.0%
!! AGAATTCTCATAAAAAAAAG+TGG - chr1_4:13132101-13132120 None:intergenic 20.0%
!! AAGTATGCAAATATTGTATT+TGG + chr1_4:13132210-13132229 Msa0151180:three_prime_UTR 20.0%
!!! ATTAATTTGTATCGTCAATT+CGG - chr1_4:13132330-13132349 None:intergenic 20.0%
!!! GTTTTGAAAGATTTTGAAAG+AGG - chr1_4:13129060-13129079 None:intergenic 25.0%
!! ATGAGTAAGATTTTTGTGTT+AGG - chr1_4:13129082-13129101 None:intergenic 25.0%
! TCATGTTGAAGAAAATAACA+AGG + chr1_4:13129481-13129500 Msa0151180:CDS 25.0%
! TGATAAGAAGAAAGAGTTAT+TGG + chr1_4:13129649-13129668 Msa0151180:CDS 25.0%
! AAAAAAAAGTTGCTCCTTAT+AGG - chr1_4:13130044-13130063 None:intergenic 25.0%
! AATATTCACTGAATTTCACT+CGG + chr1_4:13130238-13130257 Msa0151180:intron 25.0%
!! TTTTACATTTTGGATCAGTT+TGG + chr1_4:13130300-13130319 Msa0151180:intron 25.0%
!!! AATAAACGCCTTATTTCAAA+TGG + chr1_4:13130477-13130496 Msa0151180:intron 25.0%
! CATTACTTTAACATTGTAGT+AGG + chr1_4:13130510-13130529 Msa0151180:intron 25.0%
!! TTTTCTGATTAGGTACAAAA+TGG + chr1_4:13130875-13130894 Msa0151180:intron 25.0%
! GTATACTAACATAACATGTA+AGG - chr1_4:13131109-13131128 None:intergenic 25.0%
! TACTTGAAAATTTATGTGTG+TGG + chr1_4:13131288-13131307 Msa0151180:intron 25.0%
! AGTACTATAGTTATCTATGA+AGG + chr1_4:13131647-13131666 Msa0151180:intron 25.0%
! TAAAATTATTATCGGCGTAT+CGG + chr1_4:13131763-13131782 Msa0151180:intron 25.0%
! GTAACAAACAAATTTCAGTT+TGG + chr1_4:13131808-13131827 Msa0151180:intron 25.0%
! ATTTGTGATCTTCTTATGAA+AGG - chr1_4:13131933-13131952 None:intergenic 25.0%
! AAATTCTATCAGAGAAGTAA+TGG + chr1_4:13131949-13131968 Msa0151180:CDS 25.0%
!!! ATTTGAGCTTCTAGAATTTA+TGG + chr1_4:13131989-13132008 Msa0151180:three_prime_UTR 25.0%
GAAACTGGAAAAGAAATTGT+GGG - chr1_4:13129194-13129213 None:intergenic 30.0%
AGAAACTGGAAAAGAAATTG+TGG - chr1_4:13129195-13129214 None:intergenic 30.0%
TGTATTCTATCATCAGAAAC+TGG - chr1_4:13129209-13129228 None:intergenic 30.0%
! GGTAACACTATTGTTATTGT+TGG - chr1_4:13129246-13129265 None:intergenic 30.0%
ACCAAAAACTACAATCATCA+TGG + chr1_4:13129263-13129282 Msa0151180:CDS 30.0%
! ACCATGATGATTGTAGTTTT+TGG - chr1_4:13129267-13129286 None:intergenic 30.0%
! TTACTCTTTGTTGTCCATAA+AGG - chr1_4:13129323-13129342 None:intergenic 30.0%
TCAAAGAGAGTTAATGGAAA+TGG + chr1_4:13129400-13129419 Msa0151180:CDS 30.0%
! TACTTTGAAAGATCTTGTTG+AGG + chr1_4:13129454-13129473 Msa0151180:CDS 30.0%
AAAAACACACGAAAAAGAGA+AGG + chr1_4:13129527-13129546 Msa0151180:CDS 30.0%
ACGAAAAAGAGAAGGAATTA+GGG + chr1_4:13129535-13129554 Msa0151180:CDS 30.0%
! AATTAGGGCTAGTAGAAATA+TGG + chr1_4:13129550-13129569 Msa0151180:CDS 30.0%
GATAAGAAGAATATTGACAG+TGG + chr1_4:13129572-13129591 Msa0151180:CDS 30.0%
TTAGATGATCCCAAAGAAAT+TGG - chr1_4:13129623-13129642 None:intergenic 30.0%
AATGGTAGCATCAAAAGATA+TGG + chr1_4:13129824-13129843 Msa0151180:CDS 30.0%
!!! GTAAGTTTTAGATTTTGGCA+TGG + chr1_4:13130007-13130026 Msa0151180:intron 30.0%
TGGTAATTAAGAAGCCTATA+AGG + chr1_4:13130027-13130046 Msa0151180:intron 30.0%
CATTCACTTATCAATCACAT+TGG - chr1_4:13130536-13130555 None:intergenic 30.0%
CACCAAATTGATAAAGTAGT+GGG + chr1_4:13130709-13130728 Msa0151180:intron 30.0%
ATGTTGGTCGATAAAGAAAA+AGG + chr1_4:13130802-13130821 Msa0151180:intron 30.0%
!! ATCATTCAAAAGGTGTTTAG+TGG - chr1_4:13131147-13131166 None:intergenic 30.0%
ACAATCATTTCAAAGATCTC+AGG - chr1_4:13131553-13131572 None:intergenic 30.0%
TTTCATATGCTTGTGATTGT+CGG + chr1_4:13131838-13131857 Msa0151180:intron 30.0%
!! TAAATTTTTGGATGCAATGC+AGG + chr1_4:13131880-13131899 Msa0151180:intron 30.0%
GAGAGAAATCTAAATTCAAG+TGG + chr1_4:13132013-13132032 Msa0151180:three_prime_UTR 30.0%
TAAACTATCACATCTCAATC+TGG - chr1_4:13132267-13132286 None:intergenic 30.0%
AACCACTACAACACATTGAA+AGG - chr1_4:13128989-13129008 None:intergenic 35.0%
!! AGATTTTGAAAGAGGGTGAA+GGG - chr1_4:13129052-13129071 None:intergenic 35.0%
!! AAGATTTTGAAAGAGGGTGA+AGG - chr1_4:13129053-13129072 None:intergenic 35.0%
!! AAGAAATTGTGGGTTGGTAA+TGG - chr1_4:13129184-13129203 None:intergenic 35.0%
AAGAGGTCAAAGAGAGTTAA+TGG + chr1_4:13129394-13129413 Msa0151180:CDS 35.0%
GTAAGTTCATAGCTTGATTC+TGG - chr1_4:13129437-13129456 None:intergenic 35.0%
CACGAAAAAGAGAAGGAATT+AGG + chr1_4:13129534-13129553 Msa0151180:CDS 35.0%
AAGAAGAATATTGACAGTGG+AGG + chr1_4:13129575-13129594 Msa0151180:CDS 35.0%
AGAAGAATATTGACAGTGGA+GGG + chr1_4:13129576-13129595 Msa0151180:CDS 35.0%
! TTCTGATGGATCTGTTAGTA+AGG + chr1_4:13129721-13129740 Msa0151180:CDS 35.0%
ATGGATCTGTTAGTAAGGAT+TGG + chr1_4:13129726-13129745 Msa0151180:CDS 35.0%
AGTGGTGTATCTAGTATGAA+TGG + chr1_4:13129806-13129825 Msa0151180:CDS 35.0%
!! AAAATCTTGATGATGCAACC+AGG - chr1_4:13130283-13130302 None:intergenic 35.0%
! CATTTTGGATCAGTTTGGAT+TGG + chr1_4:13130305-13130324 Msa0151180:intron 35.0%
AAGAGTCTCACAAGAGTTTA+TGG - chr1_4:13130358-13130377 None:intergenic 35.0%
! GAAATAAGGCGTTTATTAGC+TGG - chr1_4:13130474-13130493 None:intergenic 35.0%
! AGGTTAAAGGTAGCCTTAAA+AGG + chr1_4:13130678-13130697 Msa0151180:intron 35.0%
CCACTACTTTATCAATTTGG+TGG - chr1_4:13130711-13130730 None:intergenic 35.0%
CCACCAAATTGATAAAGTAG+TGG + chr1_4:13130708-13130727 Msa0151180:intron 35.0%
CTCCCACTACTTTATCAATT+TGG - chr1_4:13130714-13130733 None:intergenic 35.0%
! AAAGTAGTGGGAGTATATTG+TGG + chr1_4:13130721-13130740 Msa0151180:intron 35.0%
! TCTGTGACACTTTTCTGATT+AGG + chr1_4:13130865-13130884 Msa0151180:intron 35.0%
AGGAAAGACACTCTTTAGAT+TGG + chr1_4:13131667-13131686 Msa0151180:intron 35.0%
TCTTTAGATTGGATGTATCC+TGG + chr1_4:13131678-13131697 Msa0151180:intron 35.0%
TTACTATTGGATAACCGACA+CGG - chr1_4:13131792-13131811 None:intergenic 35.0%
AAATGAGTACTAGCAGATGT+TGG + chr1_4:13131907-13131926 Msa0151180:CDS 35.0%
TTCTATCAGAGAAGTAATGG+TGG + chr1_4:13131952-13131971 Msa0151180:exon 35.0%
TTAGAATGTGTTTGGTTGAG+TGG - chr1_4:13132072-13132091 None:intergenic 35.0%
! AATTCGGTTTAGGGTACATT+TGG - chr1_4:13132314-13132333 None:intergenic 35.0%
TGTATCGTCAATTCGGTTTA+GGG - chr1_4:13132323-13132342 None:intergenic 35.0%
TTGTATCGTCAATTCGGTTT+AGG - chr1_4:13132324-13132343 None:intergenic 35.0%
CACCTTTCAATGTGTTGTAG+TGG + chr1_4:13128984-13129003 Msa0151180:five_prime_UTR 40.0%
CTGGAAAAGAAATTGTGGGT+TGG - chr1_4:13129190-13129209 None:intergenic 40.0%
GTATGTGTTCTCCACCTTTA+TGG + chr1_4:13129306-13129325 Msa0151180:CDS 40.0%
! CTCTTTGTTGTCCATAAAGG+TGG - chr1_4:13129320-13129339 None:intergenic 40.0%
! ATGGCTTGTGTCTTTGATTC+AGG - chr1_4:13129371-13129390 None:intergenic 40.0%
AAGACACAAGCCATTGAAAG+AGG + chr1_4:13129377-13129396 Msa0151180:CDS 40.0%
CTCTCTTTGACCTCTTTCAA+TGG - chr1_4:13129390-13129409 None:intergenic 40.0%
GATCTGTTAGTAAGGATTGG+TGG + chr1_4:13129729-13129748 Msa0151180:CDS 40.0%
GATTGGTGGAAGAAGAAACT+GGG + chr1_4:13129743-13129762 Msa0151180:CDS 40.0%
ATTGGTGGAAGAAGAAACTG+GGG + chr1_4:13129744-13129763 Msa0151180:CDS 40.0%
GGTGATCAAAGTGATCATAG+TGG + chr1_4:13129788-13129807 Msa0151180:CDS 40.0%
TAGTCATGTTTCGCTGAGTT+TGG + chr1_4:13130150-13130169 Msa0151180:intron 40.0%
!! TGGTGGTGTCTTTCCTTTTA+AGG - chr1_4:13130694-13130713 None:intergenic 40.0%
ATTGATGCATGTCTAACACC+AGG - chr1_4:13131699-13131718 None:intergenic 40.0%
GGCAACACTTAGAATGTGTT+TGG - chr1_4:13132080-13132099 None:intergenic 40.0%
!! GGTTGGTAATGGTATCTTCG+TGG - chr1_4:13129173-13129192 None:intergenic 45.0%
GGTCATGTTGAAGATGAACC+TGG + chr1_4:13129284-13129303 Msa0151180:CDS 45.0%
AAAGGTGGAGAACACATACC+AGG - chr1_4:13129305-13129324 None:intergenic 45.0%
CCATCAGAAACAGATGCTCT+TGG - chr1_4:13129710-13129729 None:intergenic 45.0%
!! CCAAGAGCATCTGTTTCTGA+TGG + chr1_4:13129707-13129726 Msa0151180:CDS 45.0%
! GGATTGGTGGAAGAAGAAAC+TGG + chr1_4:13129742-13129761 Msa0151180:CDS 45.0%
AAGAAGAAACTGGGGAGTAG+TGG + chr1_4:13129752-13129771 Msa0151180:CDS 45.0%
AGTAGTGGTTCAGAATGTGG+AGG + chr1_4:13129767-13129786 Msa0151180:CDS 45.0%
! TCAGCGAAACATGACTAGCT+GGG - chr1_4:13130147-13130166 None:intergenic 45.0%
TCAAGGCGTGCAATTCATGT+TGG + chr1_4:13130786-13130805 Msa0151180:intron 45.0%
GTGTGTGGAGATTGTCTTGT+TGG + chr1_4:13131303-13131322 Msa0151180:intron 45.0%
GAATGTGTTTGGTTGAGTGG+TGG - chr1_4:13132069-13132088 None:intergenic 45.0%
!! AAAAATTACTTATAATTATA+TGG - chr1_4:13129908-13129927 None:intergenic 5.0%
!!! ATACAAATTAATTTAATTTT+GGG + chr1_4:13132338-13132357 Msa0151180:three_prime_UTR 5.0%
GGGAGTAGTGGTTCAGAATG+TGG + chr1_4:13129764-13129783 Msa0151180:CDS 50.0%
GAACCAGTAGTTGTAGCAGC+AGG + chr1_4:13129855-13129874 Msa0151180:CDS 50.0%
ACTCCTGCTGCTACAACTAC+TGG - chr1_4:13129861-13129880 None:intergenic 50.0%
GTAGCAGCAGGAGTAATAGC+AGG + chr1_4:13129867-13129886 Msa0151180:CDS 50.0%
! CAGCGAAACATGACTAGCTG+GGG - chr1_4:13130146-13130165 None:intergenic 50.0%
CTCAGCGAAACATGACTAGC+TGG - chr1_4:13130148-13130167 None:intergenic 50.0%
CGCGACTTTGTGACTAATCC+TGG + chr1_4:13130262-13130281 Msa0151180:intron 50.0%
! CGGCGTATCGGTCTCCGTGT+CGG + chr1_4:13131775-13131794 Msa0151180:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 13128929 13132375 13128929 ID=Msa0151180;Name=Msa0151180
chr1_4 mRNA 13128929 13132375 13128929 ID=Msa0151180-mRNA-1;Parent=Msa0151180;Name=Msa0151180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=232|1|1|1|1|1|2|407|264
chr1_4 exon 13128929 13129888 13128929 ID=Msa0151180-mRNA-1:exon:5206;Parent=Msa0151180-mRNA-1
chr1_4 exon 13131902 13132375 13131902 ID=Msa0151180-mRNA-1:exon:5207;Parent=Msa0151180-mRNA-1
chr1_4 five_prime_UTR 13128929 13129160 13128929 ID=Msa0151180-mRNA-1:five_prime_utr;Parent=Msa0151180-mRNA-1
chr1_4 CDS 13129161 13129888 13129161 ID=Msa0151180-mRNA-1:cds;Parent=Msa0151180-mRNA-1
chr1_4 CDS 13131902 13131968 13131902 ID=Msa0151180-mRNA-1:cds;Parent=Msa0151180-mRNA-1
chr1_4 three_prime_UTR 13131969 13132375 13131969 ID=Msa0151180-mRNA-1:three_prime_utr;Parent=Msa0151180-mRNA-1
Gene Sequence

>Msa0151180

ATGCTTGATCCACGAAGATACCATTACCAACCCACAATTTCTTTTCCAGTTTCTGATGATAGAATACAACAAAAAACTCATACCAACAATAACAATAGTGTTACCAAAAACTACAATCATCATGGTCATGTTGAAGATGAACCTGGTATGTGTTCTCCACCTTTATGGACAACAAAGAGTAAAAGCAACAACTATAGAAGTCTTTCACCTGAATCAAAGACACAAGCCATTGAAAGAGGTCAAAGAGAGTTAATGGAAATGGTTAAGAACATGCCAGAATCAAGCTATGAACTTACTTTGAAAGATCTTGTTGAGGAACATCATGTTGAAGAAAATAACAAGGTAAAAGAGAGAAATTTGAGCAACAAAAACACACGAAAAAGAGAAGGAATTAGGGCTAGTAGAAATATGGATAAGAAGAATATTGACAGTGGAGGGCTTTATTTGAAAATGATTTTTCCAATTTCTTTGGGATCATCTAAGAAACATGATAAGAAGAAAGAGTTATTGGTTAGTAATAAAAGTAGTAGTAATTCAAAGGTTTCACCAAGAGCATCTGTTTCTGATGGATCTGTTAGTAAGGATTGGTGGAAGAAGAAACTGGGGAGTAGTGGTTCAGAATGTGGAGGTGATCAAAGTGATCATAGTGGTGTATCTAGTATGAATGGTAGCATCAAAAGATATGGTAGTAGCAGAACCAGTAGTTGTAGCAGCAGGAGTAATAGCAGGCATGAAATGAGTACTAGCAGATGTTGGCCTTTCATAAGAAGATCACAAATTCTATCAGAGAAGTAA

Protein sequence

>Msa0151180

MLDPRRYHYQPTISFPVSDDRIQQKTHTNNNNSVTKNYNHHGHVEDEPGMCSPPLWTTKSKSNNYRSLSPESKTQAIERGQRELMEMVKNMPESSYELTLKDLVEEHHVEENNKVKERNLSNKNTRKREGIRASRNMDKKNIDSGGLYLKMIFPISLGSSKKHDKKKELLVSNKSSSNSKVSPRASVSDGSVSKDWWKKKLGSSGSECGGDQSDHSGVSSMNGSIKRYGSSRTSSCSSRSNSRHEMSTSRCWPFIRRSQILSEK*