AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153220 MtrunA17_Chr2g0287651 40.521 691 358 7 98 749 68 744 5.92e-172 523
Msa1153220 MtrunA17_Chr1g0203051 32.997 594 345 6 68 614 34 621 2.35e-103 336
Msa1153220 MtrunA17_Chr1g0202341 31.336 584 350 9 104 642 50 627 4.62e-89 299
Msa1153220 MtrunA17_Chr5g0448761 31.524 571 334 8 109 629 64 627 2.52e-85 291
Msa1153220 MtrunA17_Chr3g0082121 30.217 599 373 11 108 670 46 635 5.28e-78 269
Msa1153220 MtrunA17_Chr2g0324011 28.475 590 362 8 109 648 14 593 5.56e-77 263
Msa1153220 MtrunA17_Chr2g0296781 28.254 676 408 16 109 730 1 653 1.14e-75 263
Msa1153220 MtrunA17_Chr6g0458391 28.413 542 360 9 109 627 229 765 1.15e-73 258
Msa1153220 MtrunA17_Chr8g0363841 26.989 641 397 13 101 682 9 637 1.17e-73 256
Msa1153220 MtrunA17_Chr3g0080351 28.476 597 380 13 100 665 71 651 1.74e-73 259
Msa1153220 MtrunA17_Chr1g0198761 29.688 576 342 10 111 631 53 620 6.16e-73 256
Msa1153220 MtrunA17_Chr1g0203721 27.564 624 397 13 111 690 69 681 8.23e-73 258
Msa1153220 MtrunA17_Chr6g0477261 34.577 402 248 6 237 627 48 445 1.08e-72 253
Msa1153220 MtrunA17_Chr5g0441581 27.113 627 392 13 109 690 36 642 1.73e-71 251
Msa1153220 MtrunA17_Chr2g0329031 26.350 611 381 12 92 660 1 584 5.14e-70 248
Msa1153220 MtrunA17_Chr1g0207551 29.464 560 346 10 109 627 38 589 2.68e-68 244
Msa1153220 MtrunA17_Chr1g0196541 30.070 572 331 16 109 627 1 556 1.07e-66 238
Msa1153220 MtrunA17_Chr5g0448511 30.653 398 266 5 237 628 5 398 9.72e-65 228
Msa1153220 MtrunA17_Chr3g0118611 30.822 438 284 7 244 675 118 542 5.79e-64 231
Msa1153220 MtrunA17_Chr5g0440451 26.763 624 375 15 109 675 47 645 4.15e-63 231
Msa1153220 MtrunA17_Chr2g0287061 28.351 582 380 14 110 675 188 748 2.99e-60 221
Msa1153220 MtrunA17_Chr2g0276841 26.282 624 398 14 111 687 76 684 1.11e-57 211
Msa1153220 MtrunA17_Chr2g0291581 27.240 558 356 13 109 627 75 621 2.92e-57 210
Msa1153220 MtrunA17_Chr2g0291591 30.103 485 281 11 106 546 65 535 2.39e-56 204
Msa1153220 MtrunA17_Chr5g0431001 30.569 422 235 7 111 478 67 484 2.68e-56 203
Msa1153220 MtrunA17_Chr2g0290391 25.457 656 393 15 109 696 55 682 3.19e-52 195
Msa1153220 MtrunA17_Chr2g0294841 26.842 570 354 13 111 628 51 609 3.50e-52 196
Msa1153220 MtrunA17_Chr1g0164591 34.007 297 164 6 192 457 12 307 9.01e-48 173
Msa1153220 MtrunA17_Chr2g0308841 33.051 236 156 1 402 637 4 237 1.57e-38 144
Msa1153220 MtrunA17_Chr7g0258861 29.825 285 147 6 109 348 14 290 7.74e-30 120
Msa1153220 MtrunA17_Chr1g0149131 34.545 110 67 1 349 453 1 110 2.47e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153220 AT4G38180.1 30.233 645 395 12 33 631 3 638 2.93e-85 291
Msa1153220 AT4G15090.1 28.999 669 413 15 57 677 2 656 6.52e-79 275
Msa1153220 AT4G15090.5 28.999 669 413 15 57 677 2 656 6.52e-79 275
Msa1153220 AT4G15090.3 28.999 669 413 15 57 677 2 656 6.52e-79 275
Msa1153220 AT4G15090.2 28.999 669 413 15 57 677 2 656 6.52e-79 275
Msa1153220 AT4G15090.4 28.999 669 413 15 57 677 2 656 6.52e-79 275
Msa1153220 AT3G22170.2 28.036 667 424 16 56 686 30 676 1.06e-73 260
Msa1153220 AT3G22170.1 28.036 667 424 16 56 686 30 676 1.06e-73 260
Msa1153220 AT2G27110.2 27.316 637 396 14 63 669 14 613 1.50e-69 249
Msa1153220 AT2G27110.1 27.316 637 396 14 63 669 14 613 1.50e-69 249
Msa1153220 AT4G19990.7 27.931 580 379 11 83 631 6 577 6.15e-66 237
Msa1153220 AT4G19990.6 28.073 545 362 9 110 631 26 563 9.75e-66 236
Msa1153220 AT4G19990.2 28.073 545 362 9 110 631 26 563 9.75e-66 236
Msa1153220 AT4G19990.3 28.073 545 362 9 110 631 26 563 1.02e-65 236
Msa1153220 AT4G19990.4 28.073 545 362 9 110 631 26 563 1.02e-65 236
Msa1153220 AT3G06250.2 27.521 585 379 12 109 675 194 751 1.09e-65 236
Msa1153220 AT3G06250.1 27.521 585 379 12 109 675 194 751 1.09e-65 236
Msa1153220 AT3G06250.3 27.521 585 379 12 109 675 194 751 1.09e-65 236
Msa1153220 AT4G19990.5 28.073 545 362 9 110 631 26 563 1.10e-65 236
Msa1153220 AT4G19990.1 28.660 485 331 7 155 631 29 506 1.09e-62 226
Msa1153220 AT1G80010.1 28.151 611 362 17 84 636 79 670 1.15e-62 226
Msa1153220 AT2G27110.3 30.324 432 281 7 244 669 51 468 2.16e-62 225
Msa1153220 AT2G32250.5 27.616 583 370 12 109 667 42 596 1.52e-61 224
Msa1153220 AT2G32250.2 27.616 583 370 12 109 667 42 596 1.59e-61 224
Msa1153220 AT2G32250.4 27.616 583 370 12 109 667 42 596 1.59e-61 224
Msa1153220 AT2G32250.6 27.616 583 370 12 109 667 42 596 1.76e-61 224
Msa1153220 AT2G32250.1 27.616 583 370 12 109 667 42 596 1.76e-61 224
Msa1153220 AT2G32250.3 27.616 583 370 12 109 667 42 596 1.76e-61 224
Msa1153220 AT2G32250.8 27.616 583 370 12 109 667 1 555 1.89e-61 224
Msa1153220 AT2G32250.7 27.616 583 370 12 109 667 1 555 2.08e-61 224
Msa1153220 AT1G76320.1 26.847 555 365 12 109 630 1 547 2.09e-61 223
Msa1153220 AT1G76320.4 26.847 555 365 12 109 630 1 547 2.09e-61 223
Msa1153220 AT1G76320.2 26.847 555 365 12 109 630 1 547 2.10e-61 223
Msa1153220 AT1G76320.3 26.847 555 365 12 109 630 1 547 2.98e-61 221
Msa1153220 AT5G18960.2 26.904 591 378 13 109 675 215 775 1.06e-60 222
Msa1153220 AT5G18960.1 26.904 591 378 13 109 675 215 775 1.06e-60 222
Msa1153220 AT1G52520.1 27.417 569 354 14 109 632 89 643 1.44e-60 220
Msa1153220 AT1G10240.2 26.498 634 384 14 111 687 54 662 3.17e-57 210
Msa1153220 AT1G10240.1 26.498 634 384 14 111 687 54 662 3.17e-57 210
Msa1153220 AT5G28530.1 26.910 576 357 11 111 633 61 625 4.82e-56 207
Msa1153220 AT4G38170.1 28.337 427 277 9 276 686 45 458 5.83e-55 200
Msa1153220 AT5G28530.3 26.736 576 354 12 111 633 61 621 6.15e-55 203
Msa1153220 AT5G28530.2 26.736 576 354 12 111 633 61 621 6.15e-55 203
Msa1153220 AT5G28530.4 24.203 533 363 11 111 633 61 562 9.96e-39 154
Msa1153220 AT5G28530.5 23.827 533 361 11 111 633 61 558 1.45e-37 150

Find 162 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGATCCACCATTATT+TGG 0.155571 7_4:+39519273 None:intergenic
CAAAGGCGATGCCTTGTATT+TGG 0.159430 7_4:+39521019 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 7_4:+39519510 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 7_4:+39520299 None:intergenic
TCACTCAATTTACGGTAATT+AGG 0.235603 7_4:+39521576 None:intergenic
TATCAACTTCACTCAATTTA+CGG 0.276736 7_4:+39521568 None:intergenic
ATCACTCGCAACAAATTTAC+TGG 0.280329 7_4:+39520046 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 7_4:+39521079 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 7_4:+39521240 None:intergenic
TAACACCATACCCAACATTA+TGG 0.313783 7_4:+39519322 None:intergenic
CAGTGTTAGAATGTGATGAT+AGG 0.338987 7_4:+39519226 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.347376 7_4:-39521913 Msa1153220:CDS
ACCTATAGAAAGAACAAGTA+TGG 0.349144 7_4:-39521241 Msa1153220:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 7_4:-39521665 Msa1153220:CDS
ACACCAATTCCAGCAAGTTC+TGG 0.360337 7_4:+39519891 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 7_4:-39521920 Msa1153220:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 7_4:-39521346 Msa1153220:CDS
CTCGGAACATTGTGTGTTCC+AGG 0.370631 7_4:+39519177 None:intergenic
TAAGAGCGCAAGTGATTATA+AGG 0.371814 7_4:-39520147 Msa1153220:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 7_4:-39521286 Msa1153220:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 7_4:+39520858 None:intergenic
TGTTCTAATTGTAGAAATCC+TGG 0.392101 7_4:-39519933 Msa1153220:CDS
CACTATGGGGTGCCAAATAA+TGG 0.393131 7_4:-39519285 Msa1153220:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 7_4:+39520328 None:intergenic
ACTGGAACACACAATGTTCC+TGG 0.398163 7_4:-39519195 Msa1153220:CDS
ATCATTCGCAACAAATTTGT+TGG 0.403036 7_4:+39520019 None:intergenic
TCTAACACTGCTCTGCATAC+TGG 0.407068 7_4:-39519213 Msa1153220:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 7_4:-39521306 Msa1153220:CDS
CCCATAGTTTCTCAATGTCT+TGG 0.412782 7_4:+39518998 None:intergenic
GATTATAAGGAGGCTCTAGA+AGG 0.413898 7_4:-39520134 Msa1153220:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 7_4:+39519837 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 7_4:-39519629 Msa1153220:CDS
CAAGGCATCGCCTTTGCGCC+TGG 0.420887 7_4:-39521012 Msa1153220:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 7_4:-39519550 Msa1153220:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 7_4:-39519894 Msa1153220:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 7_4:-39520549 Msa1153220:CDS
TACGGTAATTAGGCATCAAA+TGG 0.442752 7_4:+39521586 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 7_4:+39521704 None:intergenic
TAAATTTGTTGCGAGTGATA+AGG 0.460501 7_4:-39520042 Msa1153220:CDS
AAATGGACATGACGAGGATA+AGG 0.462491 7_4:-39520069 Msa1153220:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 7_4:+39521243 None:intergenic
GCGTCAATTAGTATGCAATA+AGG 0.467578 7_4:-39521778 Msa1153220:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 7_4:+39521613 None:intergenic
AGTGTTAGAATGTGATGATA+GGG 0.470693 7_4:+39519227 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 7_4:+39521718 None:intergenic
AATAGCCGTCATGAGGGAAA+TGG 0.477370 7_4:-39520086 Msa1153220:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 7_4:-39521960 Msa1153220:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 7_4:-39519900 Msa1153220:CDS
GAAATCCTGGGCACACAATA+CGG 0.497533 7_4:-39519920 Msa1153220:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 7_4:-39519672 Msa1153220:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 7_4:-39521079 Msa1153220:CDS
ATGTGAAGCGTGATTCTAAT+GGG 0.504223 7_4:-39521812 Msa1153220:CDS
TATCAGTATCAGCCTTGCCT+TGG 0.504289 7_4:+39521383 None:intergenic
AATGGTGTGACCCGTGACTT+TGG 0.505092 7_4:-39519393 Msa1153220:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 7_4:-39521433 Msa1153220:CDS
GTATCACTATGTACATCAAA+AGG 0.509968 7_4:+39522191 None:intergenic
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 7_4:-39521838 Msa1153220:CDS
TTAGAACAACATCTTGTCCT+TGG 0.513299 7_4:+39519948 None:intergenic
TGTGATGATAGGGTAGTTGT+CGG 0.517812 7_4:+39519237 None:intergenic
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 7_4:-39520898 Msa1153220:CDS
ATTTAGTCTGCAACTTGTCA+AGG 0.524883 7_4:+39520411 None:intergenic
CAAGGGTTAAAATACAAGAT+GGG 0.527779 7_4:-39521432 Msa1153220:CDS
AACAACGATGTTCGTACTGA+TGG 0.529175 7_4:-39522032 Msa1153220:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 7_4:-39520295 Msa1153220:CDS
GATGTGAAGCGTGATTCTAA+TGG 0.532287 7_4:-39521813 Msa1153220:CDS
GTTCTAATTGTAGAAATCCT+GGG 0.533951 7_4:-39519932 Msa1153220:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 7_4:+39520205 None:intergenic
CACGTCCGTATTGTGTGCCC+AGG 0.534840 7_4:+39519915 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 7_4:-39519549 Msa1153220:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 7_4:+39520994 None:intergenic
GTAGTTGTCGGAGGGAATTG+TGG 0.539742 7_4:+39519249 None:intergenic
TTTATCGGTTGAAGAGAATG+TGG 0.541414 7_4:-39520829 Msa1153220:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 7_4:-39521030 Msa1153220:CDS
AATAAGGAGGGTGTTAATGA+TGG 0.543414 7_4:-39521762 Msa1153220:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 7_4:-39519347 Msa1153220:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 7_4:+39521623 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 7_4:+39520342 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 7_4:-39521078 Msa1153220:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 7_4:-39520862 Msa1153220:CDS
GATGCAAATGCCAGGCGCAA+AGG 0.554082 7_4:+39521002 None:intergenic
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 7_4:-39520245 Msa1153220:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 7_4:-39520897 Msa1153220:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 7_4:-39519628 Msa1153220:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 7_4:-39519873 Msa1153220:CDS
CGAGATGTTGAGAAAAGCAC+TGG 0.563759 7_4:-39519645 Msa1153220:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 7_4:+39520235 None:intergenic
GTCTGAAGATCAAGGGGAGA+AGG 0.567087 7_4:-39519865 Msa1153220:CDS
TATTGTTTGCAAAATACCAC+GGG 0.573778 7_4:-39521854 Msa1153220:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 7_4:+39519996 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 7_4:-39521996 Msa1153220:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 7_4:+39520350 None:intergenic
GACATTGATAGTGATACAGA+TGG 0.581147 7_4:-39522134 Msa1153220:CDS
TGTGACAGATGATGATATAA+GGG 0.581249 7_4:-39521919 Msa1153220:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 7_4:-39520211 Msa1153220:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 7_4:-39519872 Msa1153220:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 7_4:+39521624 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 7_4:-39521775 Msa1153220:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 7_4:-39520210 Msa1153220:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 7_4:-39519333 Msa1153220:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 7_4:-39520093 Msa1153220:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 7_4:-39520575 Msa1153220:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 7_4:-39520092 Msa1153220:CDS
ATGATAGGGTAGTTGTCGGA+GGG 0.591320 7_4:+39519241 None:intergenic
TGGAACCATAATGTTGGGTA+TGG 0.594448 7_4:-39519327 Msa1153220:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 7_4:+39520343 None:intergenic
TTATCGGTTGAAGAGAATGT+GGG 0.595180 7_4:-39520828 Msa1153220:CDS
TATGAGTGCGTTGAAGAATG+TGG 0.597255 7_4:-39519056 Msa1153220:CDS
TGATAGTGATACAGATGGGG+TGG 0.597988 7_4:-39522129 Msa1153220:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 7_4:-39520494 Msa1153220:CDS
TTTGAGTTACTTCCAAGGCA+AGG 0.598828 7_4:-39521395 Msa1153220:CDS
GTATTGTTTGCAAAATACCA+CGG 0.599210 7_4:-39521855 Msa1153220:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 7_4:-39519332 Msa1153220:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 7_4:+39520611 None:intergenic
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 7_4:-39520904 Msa1153220:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 7_4:-39521431 Msa1153220:CDS
AAACATCGCAGTGACTATTG+TGG 0.611836 7_4:-39519022 Msa1153220:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 7_4:-39520133 Msa1153220:CDS
GCTACTTTGAGTTACTTCCA+AGG 0.616840 7_4:-39521400 Msa1153220:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 7_4:-39521552 Msa1153220:CDS
CATGTCCATTTCCCTCATGA+CGG 0.619225 7_4:+39520081 None:intergenic
GATGATAGGGTAGTTGTCGG+AGG 0.619255 7_4:+39519240 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 7_4:+39521188 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 7_4:-39520498 Msa1153220:CDS
ACATAGTGATACAGATGAGG+TGG 0.623452 7_4:-39522180 Msa1153220:CDS
CCACTGATGGTGAATGTCAA+AGG 0.624002 7_4:-39519996 Msa1153220:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 7_4:+39519340 None:intergenic
ATACTCACCGATGTATAACT+CGG 0.636787 7_4:+39519159 None:intergenic
AAAAGCGGTGATTACTGATG+GGG 0.637407 7_4:-39521077 Msa1153220:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 7_4:-39521202 Msa1153220:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 7_4:-39520767 Msa1153220:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 7_4:+39521838 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 7_4:+39521985 None:intergenic
TATGGGGTGCCAAATAATGG+TGG 0.646881 7_4:-39519282 Msa1153220:CDS
AATGGTGTTTGCAATGAGCA+AGG 0.648235 7_4:-39521978 Msa1153220:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 7_4:-39521537 Msa1153220:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 7_4:-39521140 Msa1153220:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 7_4:+39521600 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 7_4:-39520212 Msa1153220:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 7_4:-39520861 Msa1153220:CDS
ACATTGATAGTGATACAGAT+GGG 0.654877 7_4:-39522133 Msa1153220:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 7_4:-39521977 Msa1153220:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 7_4:-39519669 Msa1153220:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 7_4:-39522015 Msa1153220:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.668190 7_4:-39519871 Msa1153220:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 7_4:-39521141 Msa1153220:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 7_4:-39520330 Msa1153220:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 7_4:-39521092 Msa1153220:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 7_4:-39519986 Msa1153220:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 7_4:-39521774 Msa1153220:CDS
CAATGTTCCGAGTTATACAT+CGG 0.680199 7_4:-39519166 Msa1153220:intron
CATTTGACACTGCTACAGAG+TGG 0.682675 7_4:+39519673 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 7_4:-39520144 Msa1153220:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 7_4:-39520009 Msa1153220:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 7_4:-39522002 Msa1153220:CDS
TGAGGGAAATGGACATGACG+AGG 0.691164 7_4:-39520075 Msa1153220:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 7_4:-39520377 Msa1153220:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 7_4:-39522020 Msa1153220:CDS
ACATAGACTATTGAACGCAG+CGG 0.718507 7_4:+39520181 None:intergenic
CATTGATAGTGATACAGATG+GGG 0.737791 7_4:-39522132 Msa1153220:CDS
TGTACATAGTGATACAGATG+AGG 0.739686 7_4:-39522183 Msa1153220:CDS
AATTATGCAAGAAATCCACA+AGG 0.743577 7_4:+39520702 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 7_4:-39521898 Msa1153220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG - chr7_4:39521483-39521502 Msa1153220:intron 15.0%
!!! AATTATTTTAATATGCACTA+TGG - chr7_4:39521927-39521946 Msa1153220:CDS 15.0%
!!! ATTATTTTAATATGCACTAT+GGG - chr7_4:39521928-39521947 Msa1153220:CDS 15.0%
!!! TCATAAACTGTTTTAAATAT+AGG + chr7_4:39522156-39522175 None:intergenic 15.0%
!! AAAGTTTAAAGATGTCAAAA+AGG - chr7_4:39520678-39520697 Msa1153220:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG - chr7_4:39520766-39520785 Msa1153220:CDS 20.0%
!!! TTATTTTAATATGCACTATG+GGG - chr7_4:39521929-39521948 Msa1153220:CDS 20.0%
! GATGGAAAAAATAAGAAGAA+TGG - chr7_4:39519483-39519502 Msa1153220:intron 25.0%
! TATCAACTTCACTCAATTTA+CGG + chr7_4:39519662-39519681 None:intergenic 25.0%
! GAAGGACTTATATAATTTCA+CGG - chr7_4:39519763-39519782 Msa1153220:intron 25.0%
! ATATCCACTAAAAATGACAA+GGG + chr7_4:39520017-39520036 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG + chr7_4:39520018-39520037 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG + chr7_4:39520059-39520078 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG - chr7_4:39520108-39520127 Msa1153220:CDS 25.0%
! GGTGGGTAAAAAAAATTTAT+CGG - chr7_4:39520383-39520402 Msa1153220:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG + chr7_4:39520674-39520693 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG - chr7_4:39520789-39520808 Msa1153220:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG + chr7_4:39520998-39521017 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG + chr7_4:39520999-39521018 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG + chr7_4:39521720-39521739 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG + chr7_4:39521753-39521772 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG - chr7_4:39521816-39521835 Msa1153220:CDS 25.0%
GTATCACTATGTACATCAAA+AGG + chr7_4:39519039-39519058 None:intergenic 30.0%
!! ACATTGATAGTGATACAGAT+GGG - chr7_4:39519094-39519113 Msa1153220:intron 30.0%
ATGTGACAGATGATGATATA+AGG - chr7_4:39519307-39519326 Msa1153220:CDS 30.0%
TGTGACAGATGATGATATAA+GGG - chr7_4:39519308-39519327 Msa1153220:CDS 30.0%
AGATGATGATATAAGGGATA+TGG - chr7_4:39519314-39519333 Msa1153220:CDS 30.0%
GTATTGTTTGCAAAATACCA+CGG - chr7_4:39519372-39519391 Msa1153220:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG - chr7_4:39519373-39519392 Msa1153220:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG - chr7_4:39519452-39519471 Msa1153220:intron 30.0%
CAATTAGTATGCAATAAGGA+GGG - chr7_4:39519453-39519472 Msa1153220:intron 30.0%
TCACTCAATTTACGGTAATT+AGG + chr7_4:39519654-39519673 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG - chr7_4:39519713-39519732 Msa1153220:intron 30.0%
GTAAGAACATGTCATATCTT+GGG - chr7_4:39519714-39519733 Msa1153220:intron 30.0%
!!! TCATATCTTGGGTTTTTTGA+AGG - chr7_4:39519725-39519744 Msa1153220:intron 30.0%
ATATAATTTCACGGATCATC+AGG - chr7_4:39519772-39519791 Msa1153220:intron 30.0%
CAAGGGTTAAAATACAAGAT+GGG - chr7_4:39519795-39519814 Msa1153220:intron 30.0%
AAGGGTTAAAATACAAGATG+GGG - chr7_4:39519796-39519815 Msa1153220:intron 30.0%
GAGTTTACATTTACAGATGA+TGG - chr7_4:39519881-39519900 Msa1153220:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG - chr7_4:39519904-39519923 Msa1153220:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG + chr7_4:39519987-39520006 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG - chr7_4:39519986-39520005 Msa1153220:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG + chr7_4:39519990-39520009 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG + chr7_4:39520016-39520035 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG - chr7_4:39520086-39520105 Msa1153220:CDS 30.0%
AACAATAGAGACATACAAGT+GGG - chr7_4:39520087-39520106 Msa1153220:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG + chr7_4:39520134-39520153 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG - chr7_4:39520362-39520381 Msa1153220:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG + chr7_4:39520444-39520463 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG + chr7_4:39520528-39520547 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG - chr7_4:39520753-39520772 Msa1153220:CDS 30.0%
!! TAAATTTGTTGCGAGTGATA+AGG - chr7_4:39521185-39521204 Msa1153220:CDS 30.0%
ATCATTCGCAACAAATTTGT+TGG + chr7_4:39521211-39521230 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+TGG - chr7_4:39521294-39521313 Msa1153220:CDS 30.0%
GTTCTAATTGTAGAAATCCT+GGG - chr7_4:39521295-39521314 Msa1153220:CDS 30.0%
GATTCATTATCAGACTCAAT+AGG + chr7_4:39521393-39521412 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG - chr7_4:39521677-39521696 Msa1153220:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG - chr7_4:39521678-39521697 Msa1153220:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG + chr7_4:39521848-39521867 None:intergenic 30.0%
AAAACTGATCCACCATTATT+TGG + chr7_4:39521957-39521976 None:intergenic 30.0%
AGTGTTAGAATGTGATGATA+GGG + chr7_4:39522003-39522022 None:intergenic 30.0%
TGTACATAGTGATACAGATG+AGG - chr7_4:39519044-39519063 Msa1153220:CDS 35.0%
!! GACATTGATAGTGATACAGA+TGG - chr7_4:39519093-39519112 Msa1153220:intron 35.0%
!! CATTGATAGTGATACAGATG+GGG - chr7_4:39519095-39519114 Msa1153220:intron 35.0%
GTGGAATTTAACCATGGTAA+TGG - chr7_4:39519231-39519250 Msa1153220:CDS 35.0%
ATGTGAAGCGTGATTCTAAT+GGG - chr7_4:39519415-39519434 Msa1153220:intron 35.0%
GCGTCAATTAGTATGCAATA+AGG - chr7_4:39519449-39519468 Msa1153220:intron 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG - chr7_4:39519465-39519484 Msa1153220:intron 35.0%
ATCAAATGGACAAAACGCAA+AGG + chr7_4:39519630-39519649 None:intergenic 35.0%
TACGGTAATTAGGCATCAAA+TGG + chr7_4:39519644-39519663 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG - chr7_4:39519675-39519694 Msa1153220:CDS 35.0%
!!! TTGGGTTTTTTGAAGGACTT+GGG - chr7_4:39519732-39519751 Msa1153220:intron 35.0%
GCAAGGGTTAAAATACAAGA+TGG - chr7_4:39519794-39519813 Msa1153220:intron 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG - chr7_4:39519903-39519922 Msa1153220:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG + chr7_4:39519910-39519929 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG - chr7_4:39519941-39519960 Msa1153220:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG - chr7_4:39520010-39520029 Msa1153220:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG - chr7_4:39520025-39520044 Msa1153220:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG + chr7_4:39520045-39520064 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG - chr7_4:39520135-39520154 Msa1153220:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG - chr7_4:39520197-39520216 Msa1153220:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG + chr7_4:39520316-39520335 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG + chr7_4:39520325-39520344 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG - chr7_4:39520323-39520342 Msa1153220:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG - chr7_4:39520398-39520417 Msa1153220:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG - chr7_4:39520399-39520418 Msa1153220:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG - chr7_4:39520652-39520671 Msa1153220:CDS 35.0%
ATTTAGTCTGCAACTTGTCA+AGG + chr7_4:39520819-39520838 None:intergenic 35.0%
CTTCATGGCACAAATAATGT+GGG + chr7_4:39520887-39520906 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG + chr7_4:39520888-39520907 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG + chr7_4:39520902-39520921 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG - chr7_4:39520932-39520951 Msa1153220:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG - chr7_4:39521080-39521099 Msa1153220:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG - chr7_4:39521094-39521113 Msa1153220:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG - chr7_4:39521134-39521153 Msa1153220:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG - chr7_4:39521135-39521154 Msa1153220:CDS 35.0%
ATCACTCGCAACAAATTTAC+TGG + chr7_4:39521184-39521203 None:intergenic 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG + chr7_4:39521259-39521278 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG + chr7_4:39521260-39521279 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+TGG + chr7_4:39521282-39521301 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG + chr7_4:39521521-39521540 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG - chr7_4:39521768-39521787 Msa1153220:CDS 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG + chr7_4:39521847-39521866 None:intergenic 35.0%
! CAAGTTGGAACCATAATGTT+GGG - chr7_4:39521895-39521914 Msa1153220:CDS 35.0%
TAACACCATACCCAACATTA+TGG + chr7_4:39521908-39521927 None:intergenic 35.0%
CAGTGTTAGAATGTGATGAT+AGG + chr7_4:39522004-39522023 None:intergenic 35.0%
CAATGTTCCGAGTTATACAT+CGG - chr7_4:39522061-39522080 Msa1153220:CDS 35.0%
ATACTCACCGATGTATAACT+CGG + chr7_4:39522071-39522090 None:intergenic 35.0%
ACATAGTGATACAGATGAGG+TGG - chr7_4:39519047-39519066 Msa1153220:CDS 40.0%
AACAACGATGTTCGTACTGA+TGG - chr7_4:39519195-39519214 Msa1153220:CDS 40.0%
CATTGCAAACACCATTACCA+TGG + chr7_4:39519245-39519264 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG - chr7_4:39519249-39519268 Msa1153220:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG - chr7_4:39519250-39519269 Msa1153220:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG - chr7_4:39519267-39519286 Msa1153220:CDS 40.0%
GGATATGGAATTCAACACAG+AGG - chr7_4:39519329-39519348 Msa1153220:CDS 40.0%
GATGTGAAGCGTGATTCTAA+TGG - chr7_4:39519414-39519433 Msa1153220:intron 40.0%
TTCGAATGGTTAGCGTAGAT+CGG + chr7_4:39519512-39519531 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG + chr7_4:39519526-39519545 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG - chr7_4:39519562-39519581 Msa1153220:CDS 40.0%
GCTAATTCATGGTTGTGAGA+GGG + chr7_4:39519606-39519625 None:intergenic 40.0%
AGCTAATTCATGGTTGTGAG+AGG + chr7_4:39519607-39519626 None:intergenic 40.0%
AACGCAAAGGAGCTAATTCA+TGG + chr7_4:39519617-39519636 None:intergenic 40.0%
!!! CTTGGGTTTTTTGAAGGACT+TGG - chr7_4:39519731-39519750 Msa1153220:intron 40.0%
AGGACTTGGGTTTATCAAGA+AGG - chr7_4:39519745-39519764 Msa1153220:intron 40.0%
! GCTACTTTGAGTTACTTCCA+AGG - chr7_4:39519827-39519846 Msa1153220:CDS 40.0%
! TTTGAGTTACTTCCAAGGCA+AGG - chr7_4:39519832-39519851 Msa1153220:CDS 40.0%
TTTGGGCAGATTCTACTAGT+AGG - chr7_4:39519921-39519940 Msa1153220:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG + chr7_4:39520042-39520061 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG - chr7_4:39520149-39520168 Msa1153220:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG - chr7_4:39520150-39520169 Msa1153220:CDS 40.0%
AGTTTGAATCTGAGTGGAAG+AGG - chr7_4:39520329-39520348 Msa1153220:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG - chr7_4:39520330-39520349 Msa1153220:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG - chr7_4:39520365-39520384 Msa1153220:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG - chr7_4:39520366-39520385 Msa1153220:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG + chr7_4:39520372-39520391 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG - chr7_4:39520433-39520452 Msa1153220:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG - chr7_4:39520460-39520479 Msa1153220:CDS 40.0%
AGATGTCAAAAAGGCGATAG+AGG - chr7_4:39520687-39520706 Msa1153220:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG - chr7_4:39520729-39520748 Msa1153220:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG + chr7_4:39520880-39520899 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG - chr7_4:39520897-39520916 Msa1153220:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG + chr7_4:39520931-39520950 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG + chr7_4:39520995-39521014 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG - chr7_4:39521015-39521034 Msa1153220:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG - chr7_4:39521016-39521035 Msa1153220:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG + chr7_4:39521049-39521068 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG - chr7_4:39521093-39521112 Msa1153220:CDS 40.0%
AAATGGACATGACGAGGATA+AGG - chr7_4:39521158-39521177 Msa1153220:CDS 40.0%
GGAGTAAAAAGTCAACACCA+AGG - chr7_4:39521262-39521281 Msa1153220:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG - chr7_4:39521599-39521618 Msa1153220:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG + chr7_4:39521890-39521909 None:intergenic 40.0%
! GCAAGTTGGAACCATAATGT+TGG - chr7_4:39521894-39521913 Msa1153220:CDS 40.0%
TGGAACCATAATGTTGGGTA+TGG - chr7_4:39521900-39521919 Msa1153220:CDS 40.0%
TGTGATGATAGGGTAGTTGT+CGG + chr7_4:39521993-39522012 None:intergenic 40.0%
TATGAGTGCGTTGAAGAATG+TGG - chr7_4:39522171-39522190 Msa1153220:CDS 40.0%
AAACATCGCAGTGACTATTG+TGG - chr7_4:39522205-39522224 Msa1153220:CDS 40.0%
! TGATAGTGATACAGATGGGG+TGG - chr7_4:39519098-39519117 Msa1153220:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG - chr7_4:39519225-39519244 Msa1153220:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG + chr7_4:39519392-39519411 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG - chr7_4:39519389-39519408 Msa1153220:CDS 45.0%
ATTTCACGGATCATCAGGCA+AGG - chr7_4:39519777-39519796 Msa1153220:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG - chr7_4:39519778-39519797 Msa1153220:intron 45.0%
TATCAGTATCAGCCTTGCCT+TGG + chr7_4:39519847-39519866 None:intergenic 45.0%
! CCATCAGTAATCACCGCTTT+TGG + chr7_4:39520151-39520170 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG - chr7_4:39520148-39520167 Msa1153220:CDS 45.0%
CAAAGGCGATGCCTTGTATT+TGG + chr7_4:39520211-39520230 None:intergenic 45.0%
AGCATTTCGATGCAAATGCC+AGG + chr7_4:39520236-39520255 None:intergenic 45.0%
!!! CCACAAGGCTGTTTTTGTGT+CGG + chr7_4:39520513-39520532 None:intergenic 45.0%
GTCAATGCAGTTGTCAGCAT+AGG + chr7_4:39520619-39520638 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG - chr7_4:39520733-39520752 Msa1153220:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG - chr7_4:39521017-39521036 Msa1153220:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG - chr7_4:39521083-39521102 Msa1153220:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG - chr7_4:39521141-39521160 Msa1153220:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG + chr7_4:39521149-39521168 None:intergenic 45.0%
TGTTGCGAATGATCCACTGA+TGG - chr7_4:39521218-39521237 Msa1153220:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG + chr7_4:39521234-39521253 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG - chr7_4:39521231-39521250 Msa1153220:CDS 45.0%
GAAATCCTGGGCACACAATA+CGG - chr7_4:39521307-39521326 Msa1153220:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG - chr7_4:39521333-39521352 Msa1153220:CDS 45.0%
ACACCAATTCCAGCAAGTTC+TGG + chr7_4:39521339-39521358 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG - chr7_4:39521355-39521374 Msa1153220:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG - chr7_4:39521356-39521375 Msa1153220:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG + chr7_4:39521557-39521576 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG - chr7_4:39521555-39521574 Msa1153220:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG - chr7_4:39521558-39521577 Msa1153220:CDS 45.0%
! CGAGATGTTGAGAAAAGCAC+TGG - chr7_4:39521582-39521601 Msa1153220:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG - chr7_4:39521598-39521617 Msa1153220:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG - chr7_4:39521880-39521899 Msa1153220:CDS 45.0%
! CACTATGGGGTGCCAAATAA+TGG - chr7_4:39521942-39521961 Msa1153220:CDS 45.0%
! TATGGGGTGCCAAATAATGG+TGG - chr7_4:39521945-39521964 Msa1153220:CDS 45.0%
ATGATAGGGTAGTTGTCGGA+GGG + chr7_4:39521989-39522008 None:intergenic 45.0%
TCTAACACTGCTCTGCATAC+TGG - chr7_4:39522014-39522033 Msa1153220:CDS 45.0%
ACTGGAACACACAATGTTCC+TGG - chr7_4:39522032-39522051 Msa1153220:CDS 45.0%
! CGTACTGATGGAGATGCAGA+CGG - chr7_4:39519207-39519226 Msa1153220:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG - chr7_4:39519690-39519709 Msa1153220:CDS 50.0%
CCGACACAAAAACAGCCTTG+TGG - chr7_4:39520510-39520529 Msa1153220:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG - chr7_4:39520850-39520869 Msa1153220:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG - chr7_4:39520982-39521001 Msa1153220:CDS 50.0%
TGAGGGAAATGGACATGACG+AGG - chr7_4:39521152-39521171 Msa1153220:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG - chr7_4:39521241-39521260 Msa1153220:CDS 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG - chr7_4:39521354-39521373 Msa1153220:CDS 50.0%
GTCTGAAGATCAAGGGGAGA+AGG - chr7_4:39521362-39521381 Msa1153220:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG - chr7_4:39521834-39521853 Msa1153220:CDS 50.0%
GTAGTTGTCGGAGGGAATTG+TGG + chr7_4:39521981-39522000 None:intergenic 50.0%
GATGATAGGGTAGTTGTCGG+AGG + chr7_4:39521990-39522009 None:intergenic 50.0%
CTCGGAACATTGTGTGTTCC+AGG + chr7_4:39522053-39522072 None:intergenic 50.0%
TGATGGAGATGCAGACGGTG+TGG - chr7_4:39519212-39519231 Msa1153220:CDS 55.0%
GATGCAAATGCCAGGCGCAA+AGG + chr7_4:39520228-39520247 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG + chr7_4:39521025-39521044 None:intergenic 55.0%
CACGTCCGTATTGTGTGCCC+AGG + chr7_4:39521315-39521334 None:intergenic 60.0%
CGGACGTGTCCAGAACTTGC+TGG - chr7_4:39521327-39521346 Msa1153220:CDS 60.0%
!! CAAGGCATCGCCTTTGCGCC+TGG - chr7_4:39520215-39520234 Msa1153220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 39519009 39522240 39519009 ID=Msa1153220;Name=Msa1153220
chr7_4 mRNA 39519009 39522240 39519009 ID=Msa1153220-mRNA-1;Parent=Msa1153220;Name=Msa1153220-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0|0|0.4|1|1|5|0|959
chr7_4 exon 39521536 39522240 39521536 ID=Msa1153220-mRNA-1:exon:9596;Parent=Msa1153220-mRNA-1
chr7_4 exon 39519824 39521455 39519824 ID=Msa1153220-mRNA-1:exon:9595;Parent=Msa1153220-mRNA-1
chr7_4 exon 39519506 39519727 39519506 ID=Msa1153220-mRNA-1:exon:9594;Parent=Msa1153220-mRNA-1
chr7_4 exon 39519167 39519415 39519167 ID=Msa1153220-mRNA-1:exon:9593;Parent=Msa1153220-mRNA-1
chr7_4 exon 39519009 39519080 39519009 ID=Msa1153220-mRNA-1:exon:9592;Parent=Msa1153220-mRNA-1
chr7_4 CDS 39521536 39522240 39521536 ID=Msa1153220-mRNA-1:cds;Parent=Msa1153220-mRNA-1
chr7_4 CDS 39519824 39521455 39519824 ID=Msa1153220-mRNA-1:cds;Parent=Msa1153220-mRNA-1
chr7_4 CDS 39519506 39519727 39519506 ID=Msa1153220-mRNA-1:cds;Parent=Msa1153220-mRNA-1
chr7_4 CDS 39519167 39519415 39519167 ID=Msa1153220-mRNA-1:cds;Parent=Msa1153220-mRNA-1
chr7_4 CDS 39519009 39519080 39519009 ID=Msa1153220-mRNA-1:cds;Parent=Msa1153220-mRNA-1
Gene Sequence

>Msa1153220

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTACATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACATTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAGCGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTATTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGTAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGCAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAACAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTACTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACGAGGATAAGGCCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCAAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTTGGGTATGGTGTTAATTATTTTAATATGCACTATGGGGTGCCAAATAATGGTGGATCAGTTTTTCCACAATTCCCTCCGACAACTACCCTATCATCACATTCTAACACTGCTCTGCATACTGGAACACACAATGTTCCTGGAACACACAATGTTCCGAGTTATACATCGTTTATGAGTGCGTTGAAGAATGTGGAGCTGTTAGCAAAACATCGCAGTGACTATTGTGGACCAAGACATTGA
Protein sequence

>Msa1153220

MSTYSEATLPFDVHSDTDEVEFNSVNDIDIDSDTDGVEFNSVNDVDTDSDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMEFNTEDEAIKFYVLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSIFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDEDKASKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNVGYGVNYFNMHYGVPNNGGSVFPQFPPTTTLSSHSNTALHTGTHNVPGTHNVPSYTSFMSALKNVELLAKHRSDYCGPRH*