AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336550 MtrunA17_Chr2g0287651 43.126 691 374 6 98 783 68 744 0.0 586
Msa1336550 MtrunA17_Chr1g0203051 34.564 596 367 6 68 648 34 621 5.32e-118 374
Msa1336550 MtrunA17_Chr1g0202341 32.709 587 372 10 104 676 50 627 1.07e-97 321
Msa1336550 MtrunA17_Chr5g0448761 32.632 570 363 9 109 663 64 627 7.01e-95 316
Msa1336550 MtrunA17_Chr2g0324011 29.195 596 404 6 99 682 4 593 1.72e-86 288
Msa1336550 MtrunA17_Chr2g0296781 29.204 678 433 15 109 764 1 653 6.45e-85 288
Msa1336550 MtrunA17_Chr8g0363841 28.169 639 422 11 101 714 9 635 1.71e-84 285
Msa1336550 MtrunA17_Chr5g0441581 28.346 635 408 12 109 724 36 642 3.45e-83 282
Msa1336550 MtrunA17_Chr1g0198761 28.977 704 448 14 111 784 53 734 5.21e-81 278
Msa1336550 MtrunA17_Chr3g0082121 30.099 608 396 12 108 704 46 635 1.88e-80 275
Msa1336550 MtrunA17_Chr6g0477261 34.813 428 264 6 245 661 22 445 1.06e-78 269
Msa1336550 MtrunA17_Chr1g0203721 27.885 624 429 11 111 724 69 681 6.72e-77 269
Msa1336550 MtrunA17_Chr1g0207551 31.127 559 372 9 109 661 38 589 3.59e-75 263
Msa1336550 MtrunA17_Chr6g0458391 28.042 567 364 11 109 661 229 765 8.19e-73 255
Msa1336550 MtrunA17_Chr3g0080351 27.581 620 390 12 100 699 71 651 7.20e-72 254
Msa1336550 MtrunA17_Chr1g0196541 30.594 572 362 15 109 661 1 556 1.45e-70 248
Msa1336550 MtrunA17_Chr2g0329031 26.094 617 409 11 92 694 1 584 1.90e-69 245
Msa1336550 MtrunA17_Chr5g0448511 30.653 398 266 5 271 662 5 398 2.40e-65 229
Msa1336550 MtrunA17_Chr5g0440451 27.404 624 405 16 109 709 47 645 3.35e-65 236
Msa1336550 MtrunA17_Chr3g0118611 29.862 509 325 11 211 709 56 542 5.07e-65 233
Msa1336550 MtrunA17_Chr2g0276841 27.345 629 413 15 111 718 76 681 8.20e-64 228
Msa1336550 MtrunA17_Chr5g0431001 32.151 423 261 8 111 512 67 484 2.02e-63 223
Msa1336550 MtrunA17_Chr2g0290391 26.362 679 433 17 88 730 35 682 1.81e-61 221
Msa1336550 MtrunA17_Chr2g0291581 27.592 569 374 13 109 661 75 621 9.16e-61 219
Msa1336550 MtrunA17_Chr2g0287061 27.723 606 387 14 110 709 188 748 6.90e-60 219
Msa1336550 MtrunA17_Chr2g0291591 30.453 486 312 10 106 580 65 535 1.24e-58 211
Msa1336550 MtrunA17_Chr2g0294841 28.196 571 379 14 111 662 51 609 6.35e-58 213
Msa1336550 MtrunA17_Chr1g0164591 32.459 305 192 3 192 491 12 307 1.93e-50 181
Msa1336550 MtrunA17_Chr2g0308841 33.051 236 156 1 436 671 4 237 2.42e-38 144
Msa1336550 MtrunA17_Chr7g0258861 31.579 285 176 5 109 382 14 290 1.04e-37 143
Msa1336550 MtrunA17_Chr1g0149131 34.545 110 67 1 383 487 1 110 2.37e-16 76.3
Msa1336550 MtrunA17_Chr8g0340801 33.945 109 70 1 213 321 1 107 3.81e-14 69.3
Msa1336550 MtrunA17_Chr6g0451441 25.600 250 170 6 31 269 2 246 8.03e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336550 AT4G38180.1 31.424 646 420 12 33 665 3 638 8.75e-95 316
Msa1336550 AT4G15090.1 29.701 670 441 14 57 711 2 656 7.32e-86 293
Msa1336550 AT4G15090.5 29.701 670 441 14 57 711 2 656 7.32e-86 293
Msa1336550 AT4G15090.3 29.701 670 441 14 57 711 2 656 7.32e-86 293
Msa1336550 AT4G15090.2 29.701 670 441 14 57 711 2 656 7.32e-86 293
Msa1336550 AT4G15090.4 29.701 670 441 14 57 711 2 656 7.32e-86 293
Msa1336550 AT3G22170.2 26.744 688 440 14 56 720 30 676 1.15e-72 256
Msa1336550 AT3G22170.1 26.744 688 440 14 56 720 30 676 1.15e-72 256
Msa1336550 AT2G27110.2 26.147 654 416 14 63 703 14 613 9.97e-68 243
Msa1336550 AT2G27110.1 26.147 654 416 14 63 703 14 613 9.97e-68 243
Msa1336550 AT5G28530.1 28.423 577 381 11 111 667 61 625 8.78e-65 231
Msa1336550 AT3G06250.2 27.107 605 390 11 109 709 194 751 1.82e-64 232
Msa1336550 AT3G06250.1 27.107 605 390 11 109 709 194 751 1.82e-64 232
Msa1336550 AT3G06250.3 27.107 605 390 11 109 709 194 751 1.82e-64 232
Msa1336550 AT1G10240.2 27.373 632 409 13 111 718 54 659 4.97e-64 229
Msa1336550 AT1G10240.1 27.373 632 409 13 111 718 54 659 4.97e-64 229
Msa1336550 AT5G28530.3 28.250 577 378 12 111 667 61 621 9.84e-64 228
Msa1336550 AT5G28530.2 28.250 577 378 12 111 667 61 621 9.84e-64 228
Msa1336550 AT1G76320.3 27.051 573 375 13 109 664 1 547 8.15e-63 225
Msa1336550 AT2G27110.3 30.324 432 281 7 278 703 51 468 8.86e-63 226
Msa1336550 AT1G76320.2 27.051 573 375 13 109 664 1 547 9.70e-63 226
Msa1336550 AT1G76320.1 27.051 573 375 13 109 664 1 547 1.14e-62 226
Msa1336550 AT1G76320.4 27.051 573 375 13 109 664 1 547 1.14e-62 226
Msa1336550 AT1G52520.1 27.604 576 378 13 109 666 89 643 2.10e-62 225
Msa1336550 AT4G19990.7 27.451 612 375 14 83 665 6 577 2.93e-62 226
Msa1336550 AT1G80010.1 28.155 618 387 20 84 670 79 670 3.26e-62 225
Msa1336550 AT4G19990.3 27.556 577 358 12 110 665 26 563 3.26e-62 225
Msa1336550 AT4G19990.4 27.556 577 358 12 110 665 26 563 3.26e-62 225
Msa1336550 AT4G19990.6 27.556 577 358 12 110 665 26 563 4.91e-62 225
Msa1336550 AT4G19990.2 27.556 577 358 12 110 665 26 563 4.91e-62 225
Msa1336550 AT4G19990.5 27.556 577 358 12 110 665 26 563 5.26e-62 224
Msa1336550 AT5G18960.2 26.733 606 394 13 109 709 215 775 2.50e-60 220
Msa1336550 AT5G18960.1 26.733 606 394 13 109 709 215 775 2.50e-60 220
Msa1336550 AT4G19990.1 29.825 399 272 4 273 665 110 506 1.45e-59 216
Msa1336550 AT2G32250.8 26.742 617 366 14 109 701 1 555 1.81e-56 209
Msa1336550 AT2G32250.2 26.742 617 366 14 109 701 42 596 1.86e-56 209
Msa1336550 AT2G32250.4 26.742 617 366 14 109 701 42 596 1.86e-56 209
Msa1336550 AT2G32250.6 26.742 617 366 14 109 701 42 596 1.96e-56 209
Msa1336550 AT2G32250.1 26.742 617 366 14 109 701 42 596 1.96e-56 209
Msa1336550 AT2G32250.3 26.742 617 366 14 109 701 42 596 1.96e-56 209
Msa1336550 AT2G32250.7 26.742 617 366 14 109 701 1 555 2.42e-56 208
Msa1336550 AT2G32250.5 26.904 617 365 14 109 701 42 596 2.46e-56 208
Msa1336550 AT4G38170.1 29.609 358 243 5 310 661 45 399 2.35e-55 201
Msa1336550 AT5G28530.4 25.220 567 349 14 111 667 61 562 1.04e-43 169
Msa1336550 AT5G28530.5 24.868 567 347 14 111 667 61 558 1.18e-42 166

Find 155 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGGCGATGCCTTGTATT+TGG 0.159430 tig0001295:-5037 None:intergenic
TCAATGTTGATTGTGATATT+TGG 0.171428 tig0001295:-6546 None:intergenic
CTCTTGCAAATCAGACTTTC+AGG 0.192125 tig0001295:-5757 None:intergenic
TCACTCAATTTACGGTAATT+AGG 0.235603 tig0001295:-4458 None:intergenic
TATCAACTTCACTCAATTTA+CGG 0.276736 tig0001295:-4466 None:intergenic
ATCACTCGCAACAAATTTAC+TGG 0.280329 tig0001295:-6010 None:intergenic
CCATCAGTAATCACCGCTTT+TGG 0.302214 tig0001295:-4977 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 tig0001295:-4816 None:intergenic
TAACACCATACCCAACATTA+TGG 0.313783 tig0001295:-6734 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 tig0001295:+4574 Msa1336550:CDS
TGATAAACCCAAGTCCTTCA+TGG 0.346028 tig0001295:-4568 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.347376 tig0001295:+4121 Msa1336550:CDS
ACCTATAGAAAGAACAAGTA+TGG 0.349144 tig0001295:+4815 Msa1336550:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 tig0001295:+4369 Msa1336550:CDS
ACACCAATTCCAGCAAGTTC+TGG 0.360337 tig0001295:-6165 None:intergenic
ATGTGACAGATGATGATATA+AGG 0.367162 tig0001295:+4114 Msa1336550:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 tig0001295:+4710 Msa1336550:CDS
TAAGAGCGCAAGTGATTATA+AGG 0.371814 tig0001295:+5909 Msa1336550:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 tig0001295:+4770 Msa1336550:CDS
TTACCCACCTGTTGTTTGAT+AGG 0.378005 tig0001295:-5198 None:intergenic
TGTAAGAACATGTCATATCT+TGG 0.387474 tig0001295:+4520 Msa1336550:CDS
TGTTCTAATTGTAGAAATCC+TGG 0.392101 tig0001295:+6123 Msa1336550:CDS
ATCCATGTTGTCATACTTCA+TGG 0.394339 tig0001295:-5728 None:intergenic
ATCATTCGCAACAAATTTGT+TGG 0.403036 tig0001295:-6037 None:intergenic
ATATAATTTCACGGATCATC+AGG 0.409639 tig0001295:+4601 Msa1336550:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 tig0001295:+4750 Msa1336550:CDS
GATTATAAGGAGGCTCTAGA+AGG 0.413898 tig0001295:+5922 Msa1336550:CDS
GATTCATTATCAGACTCAAT+AGG 0.414121 tig0001295:-6219 None:intergenic
GCACTGGTATTACACGTAAG+AGG 0.418801 tig0001295:+6427 Msa1336550:CDS
CAAGGCATCGCCTTTGCGCC+TGG 0.420887 tig0001295:+5044 Msa1336550:CDS
AACAAATACAAGCACTAGAA+AGG 0.422563 tig0001295:+6506 Msa1336550:CDS
TGTCCAGAACTTGCTGGAAT+TGG 0.422787 tig0001295:+6162 Msa1336550:CDS
AAAGTTTAAAGATGTCAAAA+AGG 0.436388 tig0001295:+5507 Msa1336550:CDS
TACGGTAATTAGGCATCAAA+TGG 0.442752 tig0001295:-4448 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 tig0001295:-4330 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 tig0001295:+4560 Msa1336550:CDS
TAAATTTGTTGCGAGTGATA+AGG 0.460501 tig0001295:+6014 Msa1336550:CDS
AAATGGACATGACGAGGATA+AGG 0.462491 tig0001295:+5987 Msa1336550:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 tig0001295:-4813 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.464989 tig0001295:+4521 Msa1336550:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 tig0001295:+4256 Msa1336550:CDS
AACGCAAAGGAGCTAGTTCA+TGG 0.470957 tig0001295:-4421 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 tig0001295:-4316 None:intergenic
AATAGCCGTCATGAGGGAAA+TGG 0.477370 tig0001295:+5970 Msa1336550:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 tig0001295:+4074 Msa1336550:CDS
CGGACGTGTCCAGAACTTGC+TGG 0.483560 tig0001295:+6156 Msa1336550:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 tig0001295:+4592 Msa1336550:CDS
GAAATCCTGGGCACACAATA+CGG 0.497533 tig0001295:+6136 Msa1336550:CDS
CACTCTGTAGCAGTGTCAAA+TGG 0.499398 tig0001295:+6384 Msa1336550:CDS
CCAAAAGCGGTGATTACTGA+TGG 0.502215 tig0001295:+4977 Msa1336550:CDS
ATGTGAAGCGTGATTCTAAT+GGG 0.504223 tig0001295:+4222 Msa1336550:CDS
AATGGTGTGACCCGTGACTT+TGG 0.505092 tig0001295:+6663 Msa1336550:CDS
GCAAGGGTTAAAATACAAGA+TGG 0.508614 tig0001295:+4623 Msa1336550:CDS
GTATCACTATGTACATCAAA+AGG 0.509968 tig0001295:-3843 None:intergenic
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 tig0001295:+4554 Msa1336550:CDS
TTTGAGTTACTTCCAAGGTA+AGG 0.511685 tig0001295:+4661 Msa1336550:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 tig0001295:+4196 Msa1336550:CDS
TTAGAACAACATCTTGTCCT+TGG 0.513299 tig0001295:-6108 None:intergenic
AGTTTGAATCTGAGTGGAAG+AGG 0.520947 tig0001295:+5158 Msa1336550:CDS
ATTTAGTCTGCAACTTGTCA+AGG 0.524883 tig0001295:-5645 None:intergenic
CAAGGGTTAAAATACAAGAT+GGG 0.527779 tig0001295:+4624 Msa1336550:CDS
AACAACGATGTTCGTACTGA+TGG 0.529175 tig0001295:+4002 Msa1336550:CDS
AAAGTCTGATTTGCAAGAGA+TGG 0.531904 tig0001295:+5761 Msa1336550:CDS
GATGTGAAGCGTGATTCTAA+TGG 0.532287 tig0001295:+4221 Msa1336550:CDS
GTTCTAATTGTAGAAATCCT+GGG 0.533951 tig0001295:+6124 Msa1336550:CDS
AAGTGCCCCTCGACGAAACA+TGG 0.534361 tig0001295:-5851 None:intergenic
CACGTCCGTATTGTGTGCCC+AGG 0.534840 tig0001295:-6141 None:intergenic
ACAAATACAAGCACTAGAAA+GGG 0.535750 tig0001295:+6507 Msa1336550:CDS
AGCATTTCGATGCAAATGCC+AGG 0.536176 tig0001295:-5062 None:intergenic
TTTATCGGTTGAAGAGAATG+TGG 0.541414 tig0001295:+5227 Msa1336550:CDS
GAGTTGTGTTTCCAAATACA+AGG 0.541485 tig0001295:+5026 Msa1336550:CDS
AATAAGGAGGGTGTTAATGA+TGG 0.543414 tig0001295:+4272 Msa1336550:CDS
AAGACAGCCATTGTGCAAGT+TGG 0.545484 tig0001295:+6709 Msa1336550:CDS
TATCAGTATCAGCCTTACCT+TGG 0.546983 tig0001295:-4673 None:intergenic
ACTTCATGGCACAAATAATG+TGG 0.547507 tig0001295:-5714 None:intergenic
CAAAAGCGGTGATTACTGAT+GGG 0.550752 tig0001295:+4978 Msa1336550:CDS
TTGACCTATCAAACAACAGG+TGG 0.553778 tig0001295:+5194 Msa1336550:CDS
GATGCAAATGCCAGGCGCAA+AGG 0.554082 tig0001295:-5054 None:intergenic
TCGTCATTTGCCTCCCAAGA+AGG 0.555407 tig0001295:+5811 Msa1336550:CDS
GTTTGAATCTGAGTGGAAGA+GGG 0.557830 tig0001295:+5159 Msa1336550:CDS
CACTGGTATTACACGTAAGA+GGG 0.559146 tig0001295:+6428 Msa1336550:CDS
GGTGTCGTGTCTGAAGATCA+AGG 0.560464 tig0001295:+6183 Msa1336550:CDS
CGAGATGTTGAGAAAAGCAC+TGG 0.563759 tig0001295:+6411 Msa1336550:CDS
TTCATCATTACCTTCTTGGG+AGG 0.565482 tig0001295:-5821 None:intergenic
AGCTAGTTCATGGTTGTGAG+AGG 0.566757 tig0001295:-4411 None:intergenic
GTCTGAAGATCAAGGGGAGA+AGG 0.567087 tig0001295:+6191 Msa1336550:CDS
TATTGTTTGCAAAATACCAC+GGG 0.573778 tig0001295:+4180 Msa1336550:CDS
CCTTTGACATTCACCATCAG+TGG 0.574175 tig0001295:-6060 None:intergenic
GCTAGTTCATGGTTGTGAGA+GGG 0.576384 tig0001295:-4410 None:intergenic
GTGGAATTTAACCATGGTAA+TGG 0.576772 tig0001295:+4038 Msa1336550:CDS
GCACAAATAATGTGGGAACA+TGG 0.578248 tig0001295:-5706 None:intergenic
TGTGACAGATGATGATATAA+GGG 0.581249 tig0001295:+4115 Msa1336550:CDS
AAATGACCATGTTTCGTCGA+GGG 0.581274 tig0001295:+5845 Msa1336550:CDS
GTGTCGTGTCTGAAGATCAA+GGG 0.581492 tig0001295:+6184 Msa1336550:CDS
TCAATTAGTATGCAATAAGG+AGG 0.584633 tig0001295:+4259 Msa1336550:CDS
AATGACCATGTTTCGTCGAG+GGG 0.585541 tig0001295:+5846 Msa1336550:CDS
GCAAGTTGGAACCATAATGT+TGG 0.585606 tig0001295:+6723 Msa1336550:CDS
TAAGATAAATAGCCGTCATG+AGG 0.585792 tig0001295:+5963 Msa1336550:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 tig0001295:+4561 Msa1336550:CDS
GAAGCTTCAAAGATATTCAC+CGG 0.587720 tig0001295:+5481 Msa1336550:CDS
AAGATAAATAGCCGTCATGA+GGG 0.587755 tig0001295:+5964 Msa1336550:CDS
ATTTCACGGATCATCAGGCA+AGG 0.592596 tig0001295:+4606 Msa1336550:CDS
CTTCATGGCACAAATAATGT+GGG 0.594948 tig0001295:-5713 None:intergenic
TTATCGGTTGAAGAGAATGT+GGG 0.595180 tig0001295:+5228 Msa1336550:CDS
GAACGAGATGAAGATGAGGA+TGG 0.598765 tig0001295:+5562 Msa1336550:CDS
GTATTGTTTGCAAAATACCA+CGG 0.599210 tig0001295:+4179 Msa1336550:CDS
CAAGTTGGAACCATAATGTT+GGG 0.599464 tig0001295:+6724 Msa1336550:CDS
GTCAATGCAGTTGTCAGCAT+AGG 0.607551 tig0001295:-5445 None:intergenic
CTGAAAAGTTTGAATCTGAG+TGG 0.609008 tig0001295:+5152 Msa1336550:CDS
AAGGGTTAAAATACAAGATG+GGG 0.610552 tig0001295:+4625 Msa1336550:CDS
ATTATAAGGAGGCTCTAGAA+GGG 0.613050 tig0001295:+5923 Msa1336550:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 tig0001295:+3900 Msa1336550:CDS
GCTACTTTGAGTTACTTCCA+AGG 0.617165 tig0001295:+4656 Msa1336550:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 tig0001295:+4482 Msa1336550:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 tig0001295:+3905 Msa1336550:CDS
CATGTCCATTTCCCTCATGA+CGG 0.619225 tig0001295:-5975 None:intergenic
AAATGGTTGTTTCTCCATGG+TGG 0.622494 tig0001295:-4868 None:intergenic
CATTGAACGAGATGAAGATG+AGG 0.623154 tig0001295:+5558 Msa1336550:CDS
ACATAGTGATACAGATGAGG+TGG 0.623452 tig0001295:+3854 Msa1336550:CDS
CCACTGATGGTGAATGTCAA+AGG 0.624002 tig0001295:+6060 Msa1336550:CDS
TATGGTTCCAACTTGCACAA+TGG 0.627946 tig0001295:-6716 None:intergenic
TTTCACGGATCATCAGGCAA+GGG 0.637022 tig0001295:+4607 Msa1336550:CDS
AAAAGCGGTGATTACTGATG+GGG 0.637407 tig0001295:+4979 Msa1336550:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 tig0001295:+4854 Msa1336550:CDS
AGAACGACATCAATCTGTGA+AGG 0.639278 tig0001295:+5289 Msa1336550:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 tig0001295:-4196 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 tig0001295:-4049 None:intergenic
AATGGTGTTTGCAATGAGCA+AGG 0.648235 tig0001295:+4056 Msa1336550:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 tig0001295:+4497 Msa1336550:CDS
AACAATAGAGACATACAAGT+GGG 0.649289 tig0001295:+4916 Msa1336550:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 tig0001295:-4434 None:intergenic
AAAATGACCATGTTTCGTCG+AGG 0.652304 tig0001295:+5844 Msa1336550:CDS
TGACCTATCAAACAACAGGT+GGG 0.653955 tig0001295:+5195 Msa1336550:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 tig0001295:+4057 Msa1336550:CDS
TCTGTAGCAGTGTCAAATGG+TGG 0.657609 tig0001295:+6387 Msa1336550:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 tig0001295:+4019 Msa1336550:CDS
ACACTGATAGTGATACAGAT+GGG 0.663559 tig0001295:+3901 Msa1336550:CDS
TGTCGTGTCTGAAGATCAAG+GGG 0.668190 tig0001295:+6185 Msa1336550:CDS
AAACAATAGAGACATACAAG+TGG 0.671084 tig0001295:+4915 Msa1336550:CDS
TGCCATGAAGTATGACAACA+TGG 0.671427 tig0001295:+5726 Msa1336550:CDS
GTATGACAAACATCCAAAAG+CGG 0.671446 tig0001295:+4964 Msa1336550:CDS
TGAATGTCAAAGGTGCCCGT+AGG 0.674674 tig0001295:+6070 Msa1336550:CDS
CAATTAGTATGCAATAAGGA+GGG 0.675920 tig0001295:+4260 Msa1336550:CDS
CATTTGACACTGCTACAGAG+TGG 0.682675 tig0001295:-6383 None:intergenic
GAGCGCAAGTGATTATAAGG+AGG 0.683366 tig0001295:+5912 Msa1336550:CDS
TGTTGCGAATGATCCACTGA+TGG 0.687875 tig0001295:+6047 Msa1336550:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 tig0001295:+4032 Msa1336550:CDS
TGAGGGAAATGGACATGACG+AGG 0.691164 tig0001295:+5981 Msa1336550:CDS
TGTAGACGCTTTGAACGCAG+AGG 0.705116 tig0001295:+5679 Msa1336550:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 tig0001295:+4014 Msa1336550:CDS
ACATAGACTATTGAACGCAG+CGG 0.718507 tig0001295:-5875 None:intergenic
CACTGATAGTGATACAGATG+GGG 0.724418 tig0001295:+3902 Msa1336550:CDS
TGTACATAGTGATACAGATG+AGG 0.739686 tig0001295:+3851 Msa1336550:CDS
AATTATGCAAGAAATCCACA+AGG 0.743577 tig0001295:-5354 None:intergenic
GGATATGGAATTCAACACAG+AGG 0.763384 tig0001295:+4136 Msa1336550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAAATTGTATATGATATTT+TGG + tig0001295:6312-6331 Msa1336550:intron 15.0%
!! AAAGGACTTATATAATTTCA+CGG + tig0001295:4592-4611 Msa1336550:CDS 20.0%
!! AAAGTTTAAAGATGTCAAAA+AGG + tig0001295:5507-5526 Msa1336550:CDS 20.0%
!!! ATTTTCAAGGTTAATGTATT+TGG + tig0001295:5595-5614 Msa1336550:CDS 20.0%
! GATGGAAAAAATAAGAAGAA+TGG + tig0001295:4290-4309 Msa1336550:CDS 25.0%
! TATCAACTTCACTCAATTTA+CGG - tig0001295:4469-4488 None:intergenic 25.0%
! ATATCCACTAAAAATGACAA+GGG - tig0001295:4846-4865 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG - tig0001295:4847-4866 None:intergenic 25.0%
! AATTAAAGCACAAGCAAAAA+TGG - tig0001295:4888-4907 None:intergenic 25.0%
!!! GGTTCTAAATTTGTTTTCAA+AGG + tig0001295:4937-4956 Msa1336550:CDS 25.0%
! GGTGGGTAAAAAAAATTTAT+CGG + tig0001295:5212-5231 Msa1336550:CDS 25.0%
!! GACATCTTTAAACTTTTTAC+CGG - tig0001295:5503-5522 None:intergenic 25.0%
!! CAAAAAAGATGTAGCTTTTT+CGG + tig0001295:5618-5637 Msa1336550:CDS 25.0%
!! TTTTTCATCATTACCTTCTT+GGG - tig0001295:5827-5846 None:intergenic 25.0%
!!! TTTTTTCATCATTACCTTCT+TGG - tig0001295:5828-5847 None:intergenic 25.0%
!! TCAATGTTGATTGTGATATT+TGG - tig0001295:6549-6568 None:intergenic 25.0%
! CAGCAAATATACTATAACAA+AGG - tig0001295:6582-6601 None:intergenic 25.0%
!!! TTGTTTTGATTGTTGTAGAA+TGG + tig0001295:6645-6664 Msa1336550:intron 25.0%
GTATCACTATGTACATCAAA+AGG - tig0001295:3846-3865 None:intergenic 30.0%
ATGTGACAGATGATGATATA+AGG + tig0001295:4114-4133 Msa1336550:CDS 30.0%
TGTGACAGATGATGATATAA+GGG + tig0001295:4115-4134 Msa1336550:CDS 30.0%
AGATGATGATATAAGGGATA+TGG + tig0001295:4121-4140 Msa1336550:CDS 30.0%
GTATTGTTTGCAAAATACCA+CGG + tig0001295:4179-4198 Msa1336550:CDS 30.0%
TATTGTTTGCAAAATACCAC+GGG + tig0001295:4180-4199 Msa1336550:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG + tig0001295:4259-4278 Msa1336550:CDS 30.0%
CAATTAGTATGCAATAAGGA+GGG + tig0001295:4260-4279 Msa1336550:CDS 30.0%
TCACTCAATTTACGGTAATT+AGG - tig0001295:4461-4480 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG + tig0001295:4520-4539 Msa1336550:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG + tig0001295:4521-4540 Msa1336550:CDS 30.0%
!!! TCATATCTTGGGTTTTTTGA+TGG + tig0001295:4532-4551 Msa1336550:CDS 30.0%
!!! CATATCTTGGGTTTTTTGAT+GGG + tig0001295:4533-4552 Msa1336550:CDS 30.0%
ATATAATTTCACGGATCATC+AGG + tig0001295:4601-4620 Msa1336550:CDS 30.0%
CAAGGGTTAAAATACAAGAT+GGG + tig0001295:4624-4643 Msa1336550:CDS 30.0%
AAGGGTTAAAATACAAGATG+GGG + tig0001295:4625-4644 Msa1336550:CDS 30.0%
GAGTTTACATTTACAGATGA+TGG + tig0001295:4710-4729 Msa1336550:CDS 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG + tig0001295:4733-4752 Msa1336550:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG - tig0001295:4816-4835 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG + tig0001295:4815-4834 Msa1336550:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG - tig0001295:4819-4838 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG - tig0001295:4845-4864 None:intergenic 30.0%
AAACAATAGAGACATACAAG+TGG + tig0001295:4915-4934 Msa1336550:CDS 30.0%
AACAATAGAGACATACAAGT+GGG + tig0001295:4916-4935 Msa1336550:CDS 30.0%
! TTTTGGATGTTTGTCATACA+TGG - tig0001295:4963-4982 None:intergenic 30.0%
!! ATTTTGACCTATCAAACAAC+AGG + tig0001295:5191-5210 Msa1336550:CDS 30.0%
TTCTAACACCACACAAAAAA+TGG - tig0001295:5273-5292 None:intergenic 30.0%
AATTATGCAAGAAATCCACA+AGG - tig0001295:5357-5376 None:intergenic 30.0%
!!! TGGAAACATTGTCATTTTCA+AGG + tig0001295:5582-5601 Msa1336550:CDS 30.0%
!! TAAATTTGTTGCGAGTGATA+AGG + tig0001295:6014-6033 Msa1336550:CDS 30.0%
ATCATTCGCAACAAATTTGT+TGG - tig0001295:6040-6059 None:intergenic 30.0%
TGTTCTAATTGTAGAAATCC+TGG + tig0001295:6123-6142 Msa1336550:CDS 30.0%
GTTCTAATTGTAGAAATCCT+GGG + tig0001295:6124-6143 Msa1336550:CDS 30.0%
GATTCATTATCAGACTCAAT+AGG - tig0001295:6222-6241 None:intergenic 30.0%
AACAAATACAAGCACTAGAA+AGG + tig0001295:6506-6525 Msa1336550:CDS 30.0%
ACAAATACAAGCACTAGAAA+GGG + tig0001295:6507-6526 Msa1336550:CDS 30.0%
! ATTTTTCATGTCCAAAGTCA+CGG - tig0001295:6677-6696 None:intergenic 30.0%
TGTACATAGTGATACAGATG+AGG + tig0001295:3851-3870 Msa1336550:CDS 35.0%
! ACACTGATAGTGATACAGAT+GGG + tig0001295:3901-3920 Msa1336550:CDS 35.0%
GTGGAATTTAACCATGGTAA+TGG + tig0001295:4038-4057 Msa1336550:CDS 35.0%
ATGTGAAGCGTGATTCTAAT+GGG + tig0001295:4222-4241 Msa1336550:CDS 35.0%
GCGTCAATTAGTATGCAATA+AGG + tig0001295:4256-4275 Msa1336550:CDS 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG + tig0001295:4272-4291 Msa1336550:CDS 35.0%
ATCAAATGGACAAAACGCAA+AGG - tig0001295:4437-4456 None:intergenic 35.0%
TACGGTAATTAGGCATCAAA+TGG - tig0001295:4451-4470 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG + tig0001295:4482-4501 Msa1336550:CDS 35.0%
!!! GGTTTTTTGATGGGTCAAAA+GGG + tig0001295:4542-4561 Msa1336550:CDS 35.0%
AGGACTTGGGTTTATCAAAA+AGG + tig0001295:4574-4593 Msa1336550:CDS 35.0%
GCAAGGGTTAAAATACAAGA+TGG + tig0001295:4623-4642 Msa1336550:CDS 35.0%
! TTTGAGTTACTTCCAAGGTA+AGG + tig0001295:4661-4680 Msa1336550:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG + tig0001295:4732-4751 Msa1336550:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG - tig0001295:4739-4758 None:intergenic 35.0%
! AGGTTTGACTATGAGTGTTT+TGG + tig0001295:4770-4789 Msa1336550:CDS 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG + tig0001295:4839-4858 Msa1336550:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG + tig0001295:4854-4873 Msa1336550:CDS 35.0%
!! CAAAAATGGTTGTTTCTCCA+TGG - tig0001295:4874-4893 None:intergenic 35.0%
GTATGACAAACATCCAAAAG+CGG + tig0001295:4964-4983 Msa1336550:CDS 35.0%
GAGTTGTGTTTCCAAATACA+AGG + tig0001295:5026-5045 Msa1336550:CDS 35.0%
!!! TCAAACTTTTCAGGTGTACA+AGG - tig0001295:5145-5164 None:intergenic 35.0%
! CACTCAGATTCAAACTTTTC+AGG - tig0001295:5154-5173 None:intergenic 35.0%
CTGAAAAGTTTGAATCTGAG+TGG + tig0001295:5152-5171 Msa1336550:CDS 35.0%
! TTTATCGGTTGAAGAGAATG+TGG + tig0001295:5227-5246 Msa1336550:CDS 35.0%
! TTATCGGTTGAAGAGAATGT+GGG + tig0001295:5228-5247 Msa1336550:CDS 35.0%
GAAGCTTCAAAGATATTCAC+CGG + tig0001295:5481-5500 Msa1336550:CDS 35.0%
ATTTAGTCTGCAACTTGTCA+AGG - tig0001295:5648-5667 None:intergenic 35.0%
CTTCATGGCACAAATAATGT+GGG - tig0001295:5716-5735 None:intergenic 35.0%
ACTTCATGGCACAAATAATG+TGG - tig0001295:5717-5736 None:intergenic 35.0%
ATCCATGTTGTCATACTTCA+TGG - tig0001295:5731-5750 None:intergenic 35.0%
! AAAGTCTGATTTGCAAGAGA+TGG + tig0001295:5761-5780 Msa1336550:CDS 35.0%
! TAAGAGCGCAAGTGATTATA+AGG + tig0001295:5909-5928 Msa1336550:CDS 35.0%
!! ATTATAAGGAGGCTCTAGAA+GGG + tig0001295:5923-5942 Msa1336550:CDS 35.0%
TAAGATAAATAGCCGTCATG+AGG + tig0001295:5963-5982 Msa1336550:CDS 35.0%
AAGATAAATAGCCGTCATGA+GGG + tig0001295:5964-5983 Msa1336550:CDS 35.0%
ATCACTCGCAACAAATTTAC+TGG - tig0001295:6013-6032 None:intergenic 35.0%
!!! TGTTGACTTTTTACTCCTAC+GGG - tig0001295:6088-6107 None:intergenic 35.0%
!!! GTGTTGACTTTTTACTCCTA+CGG - tig0001295:6089-6108 None:intergenic 35.0%
TTAGAACAACATCTTGTCCT+TGG - tig0001295:6111-6130 None:intergenic 35.0%
TATCATTACTCATAGACAGC+TGG - tig0001295:6350-6369 None:intergenic 35.0%
!! TGCTGAAAATTGTGTTGCTT+TGG + tig0001295:6597-6616 Msa1336550:intron 35.0%
! TTTTTCATGTCCAAAGTCAC+GGG - tig0001295:6676-6695 None:intergenic 35.0%
ACATAGTGATACAGATGAGG+TGG + tig0001295:3854-3873 Msa1336550:CDS 40.0%
! GACACTGATAGTGATACAGA+TGG + tig0001295:3900-3919 Msa1336550:CDS 40.0%
! CACTGATAGTGATACAGATG+GGG + tig0001295:3902-3921 Msa1336550:CDS 40.0%
AACAACGATGTTCGTACTGA+TGG + tig0001295:4002-4021 Msa1336550:CDS 40.0%
CATTGCAAACACCATTACCA+TGG - tig0001295:4052-4071 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG + tig0001295:4056-4075 Msa1336550:CDS 40.0%
ATGGTGTTTGCAATGAGCAA+GGG + tig0001295:4057-4076 Msa1336550:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG + tig0001295:4074-4093 Msa1336550:CDS 40.0%
GGATATGGAATTCAACACAG+AGG + tig0001295:4136-4155 Msa1336550:CDS 40.0%
GATGTGAAGCGTGATTCTAA+TGG + tig0001295:4221-4240 Msa1336550:CDS 40.0%
TTCGAATGGTTAGCGTAGAT+CGG - tig0001295:4319-4338 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG - tig0001295:4333-4352 None:intergenic 40.0%
ACGACTTTGTTCGTACGATT+TGG + tig0001295:4369-4388 Msa1336550:CDS 40.0%
!!! GGGTTTTTTGATGGGTCAAA+AGG + tig0001295:4541-4560 Msa1336550:CDS 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG + tig0001295:4545-4564 Msa1336550:CDS 40.0%
TGATAAACCCAAGTCCTTCA+TGG - tig0001295:4571-4590 None:intergenic 40.0%
! GCTACTTTGAGTTACTTCCA+AGG + tig0001295:4656-4675 Msa1336550:CDS 40.0%
TATCAGTATCAGCCTTACCT+TGG - tig0001295:4676-4695 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG + tig0001295:4750-4769 Msa1336550:CDS 40.0%
!! AAATGGTTGTTTCTCCATGG+TGG - tig0001295:4871-4890 None:intergenic 40.0%
CAAAAGCGGTGATTACTGAT+GGG + tig0001295:4978-4997 Msa1336550:CDS 40.0%
AAAAGCGGTGATTACTGATG+GGG + tig0001295:4979-4998 Msa1336550:CDS 40.0%
AGTTTGAATCTGAGTGGAAG+AGG + tig0001295:5158-5177 Msa1336550:CDS 40.0%
GTTTGAATCTGAGTGGAAGA+GGG + tig0001295:5159-5178 Msa1336550:CDS 40.0%
TTGACCTATCAAACAACAGG+TGG + tig0001295:5194-5213 Msa1336550:CDS 40.0%
TGACCTATCAAACAACAGGT+GGG + tig0001295:5195-5214 Msa1336550:CDS 40.0%
! TTACCCACCTGTTGTTTGAT+AGG - tig0001295:5201-5220 None:intergenic 40.0%
!!! ATGCGAGACCATTTTTTGTG+TGG + tig0001295:5262-5281 Msa1336550:CDS 40.0%
AGAACGACATCAATCTGTGA+AGG + tig0001295:5289-5308 Msa1336550:CDS 40.0%
AGATGTCAAAAAGGCGATAG+AGG + tig0001295:5516-5535 Msa1336550:CDS 40.0%
CATTGAACGAGATGAAGATG+AGG + tig0001295:5558-5577 Msa1336550:CDS 40.0%
GCACAAATAATGTGGGAACA+TGG - tig0001295:5709-5728 None:intergenic 40.0%
TGCCATGAAGTATGACAACA+TGG + tig0001295:5726-5745 Msa1336550:CDS 40.0%
CTCTTGCAAATCAGACTTTC+AGG - tig0001295:5760-5779 None:intergenic 40.0%
TTCATCATTACCTTCTTGGG+AGG - tig0001295:5824-5843 None:intergenic 40.0%
AAAATGACCATGTTTCGTCG+AGG + tig0001295:5844-5863 Msa1336550:CDS 40.0%
AAATGACCATGTTTCGTCGA+GGG + tig0001295:5845-5864 Msa1336550:CDS 40.0%
ACATAGACTATTGAACGCAG+CGG - tig0001295:5878-5897 None:intergenic 40.0%
!! GATTATAAGGAGGCTCTAGA+AGG + tig0001295:5922-5941 Msa1336550:CDS 40.0%
AAATGGACATGACGAGGATA+AGG + tig0001295:5987-6006 Msa1336550:CDS 40.0%
GGAGTAAAAAGTCAACACCA+AGG + tig0001295:6091-6110 Msa1336550:CDS 40.0%
CACTGGTATTACACGTAAGA+GGG + tig0001295:6428-6447 Msa1336550:CDS 40.0%
TATGGTTCCAACTTGCACAA+TGG - tig0001295:6719-6738 None:intergenic 40.0%
! TGATAGTGATACAGATGGGG+TGG + tig0001295:3905-3924 Msa1336550:CDS 45.0%
GACGGTGTGGAATTTAACCA+TGG + tig0001295:4032-4051 Msa1336550:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG - tig0001295:4199-4218 None:intergenic 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG + tig0001295:4196-4215 Msa1336550:CDS 45.0%
GCTAGTTCATGGTTGTGAGA+GGG - tig0001295:4413-4432 None:intergenic 45.0%
AGCTAGTTCATGGTTGTGAG+AGG - tig0001295:4414-4433 None:intergenic 45.0%
AACGCAAAGGAGCTAGTTCA+TGG - tig0001295:4424-4443 None:intergenic 45.0%
ATTTCACGGATCATCAGGCA+AGG + tig0001295:4606-4625 Msa1336550:CDS 45.0%
TTTCACGGATCATCAGGCAA+GGG + tig0001295:4607-4626 Msa1336550:CDS 45.0%
! CCATCAGTAATCACCGCTTT+TGG - tig0001295:4980-4999 None:intergenic 45.0%
CCAAAAGCGGTGATTACTGA+TGG + tig0001295:4977-4996 Msa1336550:CDS 45.0%
CAAAGGCGATGCCTTGTATT+TGG - tig0001295:5040-5059 None:intergenic 45.0%
AGCATTTCGATGCAAATGCC+AGG - tig0001295:5065-5084 None:intergenic 45.0%
!!! CCACAAGGCTGTTTTTGTGT+CGG - tig0001295:5342-5361 None:intergenic 45.0%
GTCAATGCAGTTGTCAGCAT+AGG - tig0001295:5448-5467 None:intergenic 45.0%
GAACGAGATGAAGATGAGGA+TGG + tig0001295:5562-5581 Msa1336550:CDS 45.0%
AATGACCATGTTTCGTCGAG+GGG + tig0001295:5846-5865 Msa1336550:CDS 45.0%
GAGCGCAAGTGATTATAAGG+AGG + tig0001295:5912-5931 Msa1336550:CDS 45.0%
AATAGCCGTCATGAGGGAAA+TGG + tig0001295:5970-5989 Msa1336550:CDS 45.0%
CATGTCCATTTCCCTCATGA+CGG - tig0001295:5978-5997 None:intergenic 45.0%
TGTTGCGAATGATCCACTGA+TGG + tig0001295:6047-6066 Msa1336550:CDS 45.0%
CCTTTGACATTCACCATCAG+TGG - tig0001295:6063-6082 None:intergenic 45.0%
! CCACTGATGGTGAATGTCAA+AGG + tig0001295:6060-6079 Msa1336550:CDS 45.0%
GAAATCCTGGGCACACAATA+CGG + tig0001295:6136-6155 Msa1336550:CDS 45.0%
!! TGTCCAGAACTTGCTGGAAT+TGG + tig0001295:6162-6181 Msa1336550:CDS 45.0%
ACACCAATTCCAGCAAGTTC+TGG - tig0001295:6168-6187 None:intergenic 45.0%
GTGTCGTGTCTGAAGATCAA+GGG + tig0001295:6184-6203 Msa1336550:CDS 45.0%
TGTCGTGTCTGAAGATCAAG+GGG + tig0001295:6185-6204 Msa1336550:CDS 45.0%
CATTTGACACTGCTACAGAG+TGG - tig0001295:6386-6405 None:intergenic 45.0%
CACTCTGTAGCAGTGTCAAA+TGG + tig0001295:6384-6403 Msa1336550:CDS 45.0%
TCTGTAGCAGTGTCAAATGG+TGG + tig0001295:6387-6406 Msa1336550:CDS 45.0%
! CGAGATGTTGAGAAAAGCAC+TGG + tig0001295:6411-6430 Msa1336550:CDS 45.0%
! GCACTGGTATTACACGTAAG+AGG + tig0001295:6427-6446 Msa1336550:CDS 45.0%
AAGACAGCCATTGTGCAAGT+TGG + tig0001295:6709-6728 Msa1336550:CDS 45.0%
! CGTACTGATGGAGATGCAGA+CGG + tig0001295:4014-4033 Msa1336550:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG + tig0001295:4497-4516 Msa1336550:CDS 50.0%
CCGACACAAAAACAGCCTTG+TGG + tig0001295:5339-5358 Msa1336550:CDS 50.0%
! TGTAGACGCTTTGAACGCAG+AGG + tig0001295:5679-5698 Msa1336550:CDS 50.0%
TCGTCATTTGCCTCCCAAGA+AGG + tig0001295:5811-5830 Msa1336550:CDS 50.0%
TGAGGGAAATGGACATGACG+AGG + tig0001295:5981-6000 Msa1336550:CDS 50.0%
!! TGAATGTCAAAGGTGCCCGT+AGG + tig0001295:6070-6089 Msa1336550:CDS 50.0%
! GGTGTCGTGTCTGAAGATCA+AGG + tig0001295:6183-6202 Msa1336550:CDS 50.0%
GTCTGAAGATCAAGGGGAGA+AGG + tig0001295:6191-6210 Msa1336550:CDS 50.0%
AATGGTGTGACCCGTGACTT+TGG + tig0001295:6663-6682 Msa1336550:CDS 50.0%
TGATGGAGATGCAGACGGTG+TGG + tig0001295:4019-4038 Msa1336550:CDS 55.0%
GGTCAAAAGGGTGGCCATGA+AGG + tig0001295:4554-4573 Msa1336550:CDS 55.0%
AAGGGTGGCCATGAAGGACT+TGG + tig0001295:4560-4579 Msa1336550:CDS 55.0%
AGGGTGGCCATGAAGGACTT+GGG + tig0001295:4561-4580 Msa1336550:CDS 55.0%
GATGCAAATGCCAGGCGCAA+AGG - tig0001295:5057-5076 None:intergenic 55.0%
AAGTGCCCCTCGACGAAACA+TGG - tig0001295:5854-5873 None:intergenic 55.0%
CACGTCCGTATTGTGTGCCC+AGG - tig0001295:6144-6163 None:intergenic 60.0%
CGGACGTGTCCAGAACTTGC+TGG + tig0001295:6156-6175 Msa1336550:CDS 60.0%
!! CAAGGCATCGCCTTTGCGCC+TGG + tig0001295:5044-5063 Msa1336550:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0001295 gene 3816 6743 3816 ID=Msa1336550;Name=Msa1336550
tig0001295 mRNA 3816 6743 3816 ID=Msa1336550-mRNA-1;Parent=Msa1336550;Name=Msa1336550-mRNA-1;_AED=0.23;_eAED=0.26;_QI=0|0|0|0.33|1|1|3|0|914
tig0001295 exon 3816 6254 3816 ID=Msa1336550-mRNA-1:exon:764;Parent=Msa1336550-mRNA-1
tig0001295 exon 6351 6572 6351 ID=Msa1336550-mRNA-1:exon:765;Parent=Msa1336550-mRNA-1
tig0001295 exon 6663 6743 6663 ID=Msa1336550-mRNA-1:exon:766;Parent=Msa1336550-mRNA-1
tig0001295 CDS 3816 6254 3816 ID=Msa1336550-mRNA-1:cds;Parent=Msa1336550-mRNA-1
tig0001295 CDS 6351 6572 6351 ID=Msa1336550-mRNA-1:cds;Parent=Msa1336550-mRNA-1
tig0001295 CDS 6663 6743 6663 ID=Msa1336550-mRNA-1:cds;Parent=Msa1336550-mRNA-1
Gene Sequence

>Msa1336550

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTACATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAACAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATGTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAGCGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTATTTTCAAACCCTCTCACAACCATGAACTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGTAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGTTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATACAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAAGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCATTTTTGCTTGTGCTTTAATTTGTGATGAAACAATAGAGACATACAAGTGGGTTCTAAATTTGTTTTCAAAGGCCATGTATGACAAACATCCAAAAGCGGTGATTACTGATGGGGATAAATCAATGAGAAAAGCTATCAGAGTTGTGTTTCCAAATACAAGGCATCGCCTTTGCGCCTGGCATTTGCATCGAAATGCTGTTCAACATGTGAAGAATTCAAAATTTTTAGAAGAGTTCAAGTCACTGATGTATTCTCCTTGTACACCTGAAAAGTTTGAATCTGAGTGGAAGAGGGTTGTTGAAAATTTTGACCTATCAAACAACAGGTGGGTAAAAAAAATTTATCGGTTGAAGAGAATGTGGGCAAGTGCATACATGCGAGACCATTTTTTGTGTGGTGTTAGAACGACATCAATCTGTGAAGGAGTGAATTCATTTATCAAGAAGTATGTCCGACACAAAAACAGCCTTGTGGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGAATACAGACATAATGAATTATTGTCTGATTTCAAGTCGTTCTATTATCATCCTATGCTGACAACTGCATTGACTACTTTTGAGTCTGAAGCTTCAAAGATATTCACCGGTAAAAAGTTTAAAGATGTCAAAAAGGCGATAGAGGATGTTGTTGCATTATCAGTCATTGAACGAGATGAAGATGAGGATGGAAACATTGTCATTTTCAAGGTTAATGTATTTGGCAAAAAAGATGTAGCTTTTTCGGTATACCTTGACAAGTTGCAGACTAAATTTTTATGTGATTGTAGACGCTTTGAACGCAGAGGACTGCCATGTTCCCACATTATTTGTGCCATGAAGTATGACAACATGGATGTGTTTCCTGAAAGTCTGATTTGCAAGAGATGGACAAAGACTGCAAAGAGTGATCACATCTCGTCATTTGCCTCCCAAGAAGGTAATGATGAAAAAATGACCATGTTTCGTCGAGGGGCACTTGCCGCTGCGTTCAATAGTCTATGTGATGTTTCGTGTAAGAGCGCAAGTGATTATAAGGAGGCTCTAGAAGGGATTTATAGTCTGTGTAATAAGATAAATAGCCGTCATGAGGGAAATGGACATGACGAGGATAAGGCCAGTAAATTTGTTGCGAGTGATAAGGCCAACAAATTTGTTGCGAATGATCCACTGATGGTGAATGTCAAAGGTGCCCGTAGGAGTAAAAAGTCAACACCAAGGACAAGATGTTGTTCTAATTGTAGAAATCCTGGGCACACAATACGGACGTGTCCAGAACTTGCTGGAATTGGTGTCGTGTCTGAAGATCAAGGGGAGAAGGCTTCACCTATTGAGTCTGATAATGAATCAAAAAGTTTAAGTCTGTCTATGAGTAATGATATGAATGATGACATCCACTCTGTAGCAGTGTCAAATGGTGGACGAGATGTTGAGAAAAGCACTGGTATTACACGTAAGAGGGAATGTGACAATGTTGCATTTTCAACACAAGACTCTGTCAACAAAAGAAAAACAAAAACAAATACAAGCACTAGAAAGGGTGATGCTTGTGTGACTCCAAATATCACAATCAACATTGATAATAATGGTGTGACCCGTGACTTTGGACATGAAAAATCTACTCTCAAACAAGACAGCCATTGTGCAAGTTGGAACCATAATGTT
Protein sequence

>Msa1336550

MSTYSEATLPFDVHSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTDSDTEDIKVNSNNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMEFNTEDEAIKFYVLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSIFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIQDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTIFACALICDETIETYKWVLNLFSKAMYDKHPKAVITDGDKSMRKAIRVVFPNTRHRLCAWHLHRNAVQHVKNSKFLEEFKSLMYSPCTPEKFESEWKRVVENFDLSNNRWVKKIYRLKRMWASAYMRDHFLCGVRTTSICEGVNSFIKKYVRHKNSLVDFLHNFERALKEYRHNELLSDFKSFYYHPMLTTALTTFESEASKIFTGKKFKDVKKAIEDVVALSVIERDEDEDGNIVIFKVNVFGKKDVAFSVYLDKLQTKFLCDCRRFERRGLPCSHIICAMKYDNMDVFPESLICKRWTKTAKSDHISSFASQEGNDEKMTMFRRGALAAAFNSLCDVSCKSASDYKEALEGIYSLCNKINSRHEGNGHDEDKASKFVASDKANKFVANDPLMVNVKGARRSKKSTPRTRCCSNCRNPGHTIRTCPELAGIGVVSEDQGEKASPIESDNESKSLSLSMSNDMNDDIHSVAVSNGGRDVEKSTGITRKRECDNVAFSTQDSVNKRKTKTNTSTRKGDACVTPNITINIDNNGVTRDFGHEKSTLKQDSHCASWNHNV