Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155380 | XP_024626472.1 | 96.610 | 708 | 15 | 1 | 1 | 708 | 1 | 699 | 0.0 | 1404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155380 | sp|Q93ZQ5|SPXM3_ARATH | 67.409 | 718 | 205 | 6 | 1 | 708 | 1 | 699 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155380 | G7L2J3 | 96.610 | 708 | 15 | 1 | 1 | 708 | 1 | 699 | 0.0 | 1404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027610 | Msa1155380 | 0.839295 | 1.725933e-57 | -8.615850e-47 |
| Msa0075370 | Msa1155380 | 0.831523 | 1.590604e-55 | -8.615850e-47 |
| Msa0123310 | Msa1155380 | 0.827071 | 1.915699e-54 | -8.615850e-47 |
| Msa0167800 | Msa1155380 | 0.813875 | 2.050973e-51 | -8.615850e-47 |
| Msa1066340 | Msa1155380 | 0.952888 | 9.146918e-111 | -8.615850e-47 |
| Msa0290750 | Msa1155380 | 0.876967 | 9.160649e-69 | -8.615850e-47 |
| Msa0328790 | Msa1155380 | 0.861510 | 9.756295e-64 | -8.615850e-47 |
| Msa1115500 | Msa1155380 | 0.972143 | 2.751387e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155380 | MtrunA17_Chr7g0246901 | 96.610 | 708 | 15 | 1 | 1 | 708 | 1 | 699 | 0.0 | 1404 |
| Msa1155380 | MtrunA17_Chr6g0470311 | 67.085 | 717 | 210 | 6 | 1 | 708 | 1 | 700 | 0.0 | 986 |
| Msa1155380 | MtrunA17_Chr1g0202441 | 66.104 | 711 | 218 | 5 | 1 | 708 | 1 | 691 | 0.0 | 958 |
| Msa1155380 | MtrunA17_Chr7g0253691 | 81.395 | 129 | 24 | 0 | 236 | 364 | 2 | 130 | 8.37e-65 | 211 |
| Msa1155380 | MtrunA17_Chr7g0253831 | 49.515 | 103 | 37 | 1 | 206 | 308 | 7 | 94 | 4.63e-22 | 91.7 |
| Msa1155380 | MtrunA17_Chr7g0253821 | 83.333 | 48 | 8 | 0 | 162 | 209 | 42 | 89 | 2.85e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1155380 | AT4G22990.1 | 67.409 | 718 | 205 | 6 | 1 | 708 | 1 | 699 | 0.0 | 979 |
| Msa1155380 | AT4G22990.3 | 67.038 | 719 | 207 | 5 | 1 | 708 | 1 | 700 | 0.0 | 978 |
| Msa1155380 | AT4G22990.2 | 67.038 | 719 | 207 | 5 | 1 | 708 | 1 | 700 | 0.0 | 978 |
| Msa1155380 | AT4G11810.2 | 65.556 | 720 | 216 | 7 | 1 | 708 | 1 | 700 | 0.0 | 958 |
| Msa1155380 | AT4G11810.3 | 65.556 | 720 | 216 | 7 | 1 | 708 | 1 | 700 | 0.0 | 958 |
| Msa1155380 | AT4G11810.1 | 64.560 | 728 | 217 | 7 | 1 | 708 | 1 | 707 | 0.0 | 957 |
| Msa1155380 | AT1G63010.6 | 65.738 | 718 | 217 | 6 | 1 | 708 | 1 | 699 | 0.0 | 957 |
| Msa1155380 | AT1G63010.1 | 65.738 | 718 | 217 | 6 | 1 | 708 | 1 | 699 | 0.0 | 957 |
| Msa1155380 | AT1G63010.3 | 65.738 | 718 | 217 | 6 | 1 | 708 | 1 | 699 | 0.0 | 957 |
| Msa1155380 | AT1G63010.4 | 65.738 | 718 | 217 | 6 | 1 | 708 | 1 | 699 | 0.0 | 957 |
| Msa1155380 | AT1G63010.7 | 65.738 | 718 | 217 | 6 | 1 | 708 | 1 | 699 | 0.0 | 957 |
| Msa1155380 | AT1G63010.2 | 65.922 | 716 | 217 | 7 | 1 | 708 | 1 | 697 | 0.0 | 955 |
| Msa1155380 | AT1G63010.5 | 64.924 | 727 | 217 | 7 | 1 | 708 | 1 | 708 | 0.0 | 949 |
Find 156 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTTCTCTATTAGCTTCT+TGG | 0.157547 | 7_4:+43330499 | None:intergenic |
| ACATATTGAATTACTGAATA+AGG | 0.189998 | 7_4:+43327329 | None:intergenic |
| CTTCCTGTGAATATTGTTAT+TGG | 0.224859 | 7_4:-43327807 | Msa1155380:CDS |
| CAAGGAACCTGGAAATCTTT+TGG | 0.229187 | 7_4:-43328859 | Msa1155380:CDS |
| GATGGTACAATAACAATTTC+AGG | 0.237164 | 7_4:-43326972 | Msa1155380:CDS |
| CTCAGTAGCAGTTCTTCTTA+TGG | 0.255533 | 7_4:-43329522 | Msa1155380:CDS |
| TCAGATATCTTTGAACTATC+TGG | 0.259285 | 7_4:+43330525 | None:intergenic |
| TTCATTGCTGCTAGATAATC+AGG | 0.270662 | 7_4:-43330741 | Msa1155380:intron |
| TAAAATAGTATTCTGTTATA+AGG | 0.270856 | 7_4:+43327883 | None:intergenic |
| AGTACCATTGTTCTTATGAT+TGG | 0.285968 | 7_4:-43329578 | Msa1155380:CDS |
| TGACAGTAATCCTCCGTTAT+AGG | 0.301114 | 7_4:+43327028 | None:intergenic |
| ACCTGTCTTAGCTGAGAATA+AGG | 0.301796 | 7_4:+43330345 | None:intergenic |
| CTGAATAAGGGATTAATATA+TGG | 0.307700 | 7_4:+43327342 | None:intergenic |
| CTGGTTGCTGTAGAAGATTT+TGG | 0.317748 | 7_4:+43330544 | None:intergenic |
| TGCATGGTGGATAATGAAAA+AGG | 0.340557 | 7_4:+43331737 | None:intergenic |
| ACTTTGATAGATTCAAGAAT+TGG | 0.341479 | 7_4:+43329941 | None:intergenic |
| CTCAGCTAAGACAGGTTCTA+AGG | 0.346018 | 7_4:-43330338 | Msa1155380:CDS |
| GTAGTTTCTTTGCAGGGAAT+TGG | 0.347067 | 7_4:-43330180 | Msa1155380:CDS |
| GCCAGCACAATTGAAGTAAC+AGG | 0.355785 | 7_4:+43328111 | None:intergenic |
| CTGAAGGAAATTTGTTGAGT+TGG | 0.356141 | 7_4:+43329901 | None:intergenic |
| AAATTAAACCTTGTAAGAAT+TGG | 0.356563 | 7_4:+43331093 | None:intergenic |
| AAATATATACACTTCTATTC+TGG | 0.359304 | 7_4:+43326672 | None:intergenic |
| TCATGTAGTAGTTTCTTTGC+AGG | 0.359695 | 7_4:-43330187 | Msa1155380:CDS |
| TCAGTAGCAGTTCTTCTTAT+GGG | 0.360267 | 7_4:-43329521 | Msa1155380:CDS |
| TCATAAGCCAAAAGATTTCC+AGG | 0.363934 | 7_4:+43328852 | None:intergenic |
| CATATTGAATTACTGAATAA+GGG | 0.374498 | 7_4:+43327330 | None:intergenic |
| ATACTAATAGAGAGAGTTGT+AGG | 0.381266 | 7_4:+43326863 | None:intergenic |
| CAAAATGAAGAAGCCTTAAC+AGG | 0.381769 | 7_4:+43330469 | None:intergenic |
| GTGCACAATATGGTTGCCTT+TGG | 0.390612 | 7_4:-43330993 | Msa1155380:exon |
| CCCATCCAGGTAGTGTATCT+TGG | 0.393475 | 7_4:+43328931 | None:intergenic |
| GTGGTTGTGCCTTTGTTTCA+AGG | 0.395465 | 7_4:-43328877 | Msa1155380:CDS |
| TTGCATGAAAACAATATAGT+AGG | 0.396122 | 7_4:-43326534 | Msa1155380:three_prime_UTR |
| GAGAGAGTTGTAGGTGCAAC+AGG | 0.397761 | 7_4:+43326872 | None:intergenic |
| CAGGGAATTGGTGCTGTTGT+GGG | 0.399538 | 7_4:-43330168 | Msa1155380:CDS |
| CAAGAAGCTAATAGAGAAGT+TGG | 0.400677 | 7_4:-43330498 | Msa1155380:CDS |
| TTTGTTAGTGCAAGTGCTCT+TGG | 0.409707 | 7_4:-43329023 | Msa1155380:CDS |
| TTGGCTTATGAAGCAGAAAC+AGG | 0.415504 | 7_4:-43328840 | Msa1155380:intron |
| GACCAAGGCATGCAAGGAAA+AGG | 0.420688 | 7_4:+43327838 | None:intergenic |
| GATGAGGAGTGCAGGGAGTA+AGG | 0.421439 | 7_4:+43326917 | None:intergenic |
| AGGTATTATCTGAGGCGCTT+AGG | 0.430940 | 7_4:-43326769 | Msa1155380:three_prime_UTR |
| ACCTGTTACTTCAATTGTGC+TGG | 0.441774 | 7_4:-43328112 | Msa1155380:CDS |
| GCGCGAAGGCTGTCACATAT+TGG | 0.443421 | 7_4:-43330576 | Msa1155380:CDS |
| TGCAAGGAAAAGGGCTACTT+TGG | 0.443620 | 7_4:+43327848 | None:intergenic |
| TGCCTTTGTTTCAAGGAACC+TGG | 0.444768 | 7_4:-43328870 | Msa1155380:CDS |
| CTTTCTCGCGGAACCTATAA+CGG | 0.445110 | 7_4:-43327041 | Msa1155380:CDS |
| TATTCAGTAATTCAATATGT+TGG | 0.448748 | 7_4:-43327326 | Msa1155380:CDS |
| GAGATGCAGATGAGGAGTGC+AGG | 0.454387 | 7_4:+43326909 | None:intergenic |
| CGGATCAATGGCTGTTGCAC+AGG | 0.455638 | 7_4:-43329663 | Msa1155380:CDS |
| CGGTGTCGTCATCGGATCAA+TGG | 0.456071 | 7_4:-43329675 | Msa1155380:CDS |
| GGAGAATATGCTACTTTAAG+TGG | 0.456947 | 7_4:-43326582 | Msa1155380:three_prime_UTR |
| CAACTTATAAATCCTAAAAT+CGG | 0.458381 | 7_4:+43328962 | None:intergenic |
| AAAAGTCTCGGAGTACGTTA+TGG | 0.465295 | 7_4:+43330762 | None:intergenic |
| GCAGGGAATTGGTGCTGTTG+TGG | 0.465528 | 7_4:-43330169 | Msa1155380:CDS |
| GGAGCTGCTGCAAGTGTTTG+CGG | 0.465619 | 7_4:-43329695 | Msa1155380:CDS |
| TCTACTGACATCAGAAATCA+TGG | 0.467974 | 7_4:-43327390 | Msa1155380:CDS |
| CAGCGGACACAAATGTGATA+AGG | 0.469652 | 7_4:+43327297 | None:intergenic |
| AGATGAAGATGGAGAAGAAA+GGG | 0.470073 | 7_4:-43328175 | Msa1155380:CDS |
| GCTCTGCAAGGGCTGTGAAT+AGG | 0.472304 | 7_4:-43329100 | Msa1155380:CDS |
| TTGATTTCAAAGAAGAAAGA+GGG | 0.473394 | 7_4:-43331122 | Msa1155380:five_prime_UTR |
| ACTTTACTTACCCGCAGAAA+AGG | 0.478571 | 7_4:+43329495 | None:intergenic |
| AAGTTGGAAGAGACCTGTTA+AGG | 0.479354 | 7_4:-43330482 | Msa1155380:CDS |
| AAGAAGTTTGATAAGCGGTT+CGG | 0.480933 | 7_4:-43330411 | Msa1155380:CDS |
| AGCACTTGCACTAACAAAAC+CGG | 0.487150 | 7_4:+43329028 | None:intergenic |
| AGCGGACACAAATGTGATAA+GGG | 0.495533 | 7_4:+43327298 | None:intergenic |
| TCCTTATTCTCAGCTAAGAC+AGG | 0.496651 | 7_4:-43330346 | Msa1155380:CDS |
| TCAGAAATCATGGTTTGCAT+TGG | 0.496661 | 7_4:-43327380 | Msa1155380:CDS |
| AAGGAAAAGGGCTACTTTGG+TGG | 0.497205 | 7_4:+43327851 | None:intergenic |
| TTTGATTTCAAAGAAGAAAG+AGG | 0.500277 | 7_4:-43331123 | Msa1155380:five_prime_UTR |
| TACTTACATCATTGTACCTA+CGG | 0.501759 | 7_4:-43329741 | Msa1155380:CDS |
| AGTGTTTGCGGTGTCGTCAT+CGG | 0.505772 | 7_4:-43329683 | Msa1155380:CDS |
| GGATTACTGTCAACGGAAGC+CGG | 0.507383 | 7_4:-43327017 | Msa1155380:CDS |
| CACAGATTCAAGAATGGAAA+GGG | 0.509462 | 7_4:-43330953 | Msa1155380:intron |
| CATGTAGTAGTTTCTTTGCA+GGG | 0.509900 | 7_4:-43330186 | Msa1155380:CDS |
| TGTAACAAACAAGCAATAGC+TGG | 0.510049 | 7_4:+43328987 | None:intergenic |
| GAGAATCACAGATTCAAGAA+TGG | 0.510868 | 7_4:-43330959 | Msa1155380:CDS |
| GCTTCTGAATTCATTAGCAA+TGG | 0.511257 | 7_4:+43328207 | None:intergenic |
| AGCATATTCTCCTCTAGAAT+AGG | 0.513463 | 7_4:+43326593 | None:intergenic |
| GCAAAGGATCAAGATGAAGA+TGG | 0.514251 | 7_4:-43328186 | Msa1155380:CDS |
| CTTCAATTACAACAATATCA+TGG | 0.514621 | 7_4:+43331152 | None:intergenic |
| ACCAAGGCATGCAAGGAAAA+GGG | 0.514624 | 7_4:+43327839 | None:intergenic |
| ACTGTGTACCGTTGAAACTT+CGG | 0.514996 | 7_4:-43329064 | Msa1155380:CDS |
| TACACTACCTGGATGGGTAA+TGG | 0.517086 | 7_4:-43328925 | Msa1155380:CDS |
| GGATACTGCCAATTCTTACA+AGG | 0.517390 | 7_4:-43331101 | Msa1155380:intron |
| GCGTTCCTTACCTTTACTGA+TGG | 0.517674 | 7_4:+43328072 | None:intergenic |
| ACATTTAGAAATGTTTGCTA+AGG | 0.522648 | 7_4:-43326636 | Msa1155380:three_prime_UTR |
| TAGTGCAAGTGCTCTTGGAA+TGG | 0.523117 | 7_4:-43329018 | Msa1155380:CDS |
| TTTGTGGAAATGAATGCTAC+TGG | 0.525823 | 7_4:-43330450 | Msa1155380:CDS |
| CTTCGGATGCAAGCATCGGC+CGG | 0.525877 | 7_4:-43329047 | Msa1155380:CDS |
| TTCTCTCAACTTCTTGCCAA+AGG | 0.526898 | 7_4:+43330977 | None:intergenic |
| TGCTACTGAGTTGAGATCAT+AGG | 0.528021 | 7_4:+43329535 | None:intergenic |
| GCAATAGCCATTACCCATCC+AGG | 0.530335 | 7_4:+43328918 | None:intergenic |
| AAGATGAAGATGGAGAAGAA+AGG | 0.532066 | 7_4:-43328176 | Msa1155380:CDS |
| CAGTAAGACCAAGGCATGCA+AGG | 0.535146 | 7_4:+43327832 | None:intergenic |
| GACAACTACTCACTGAACCT+TGG | 0.538735 | 7_4:-43329716 | Msa1155380:CDS |
| GACACTTCTGTAAATCATGA+AGG | 0.540120 | 7_4:+43330121 | None:intergenic |
| TCAGCAACATCTTTGAAGAA+AGG | 0.540225 | 7_4:-43327776 | Msa1155380:intron |
| CATGGCTTGTTTATCTACTG+TGG | 0.540349 | 7_4:-43328896 | Msa1155380:CDS |
| GAGATATGCAGAACAAATTG+AGG | 0.541726 | 7_4:-43330801 | Msa1155380:CDS |
| GTTGCTTACACCATCAGTAA+AGG | 0.545326 | 7_4:-43328082 | Msa1155380:intron |
| AGATGCAGATGAGGAGTGCA+GGG | 0.546822 | 7_4:+43326910 | None:intergenic |
| GCTTGCATCCGAAGTTTCAA+CGG | 0.548417 | 7_4:+43329056 | None:intergenic |
| ATGGTACAATAACAATTTCA+GGG | 0.549518 | 7_4:-43326971 | Msa1155380:CDS |
| CTTGATGAGCATAAGAAGGT+TGG | 0.549522 | 7_4:+43330073 | None:intergenic |
| TATGCAGAACAAATTGAGGT+TGG | 0.550078 | 7_4:-43330797 | Msa1155380:CDS |
| ACCAAGATACACTACCTGGA+TGG | 0.550656 | 7_4:-43328932 | Msa1155380:CDS |
| GCTAATGAATTCAGAAGCAA+AGG | 0.551653 | 7_4:-43328202 | Msa1155380:CDS |
| TTCCAGGTTCCTTGAAACAA+AGG | 0.553038 | 7_4:+43328868 | None:intergenic |
| CTAACTTGATGAGCATAAGA+AGG | 0.559578 | 7_4:+43330069 | None:intergenic |
| ACACATAAATACTTGAAACT+AGG | 0.560532 | 7_4:+43326490 | None:intergenic |
| CAATGGATGAGATGCAGATG+AGG | 0.561067 | 7_4:+43326901 | None:intergenic |
| AGTGCTCTTGGAATGGCTTG+TGG | 0.563047 | 7_4:-43329011 | Msa1155380:CDS |
| TGAGAGGTCTTAGATAAGAT+CGG | 0.563658 | 7_4:+43329606 | None:intergenic |
| CTAGCAGCAATGAAAAGTCT+CGG | 0.565599 | 7_4:+43330750 | None:intergenic |
| TCTCGCGGAACCTATAACGG+AGG | 0.565749 | 7_4:-43327038 | Msa1155380:CDS |
| AATTACTCGAGCTAGAGTTC+CGG | 0.567207 | 7_4:+43326998 | None:intergenic |
| TATTATCTGAGGCGCTTAGG+TGG | 0.567585 | 7_4:-43326766 | Msa1155380:three_prime_UTR |
| CCAAGATACACTACCTGGAT+GGG | 0.571620 | 7_4:-43328931 | Msa1155380:CDS |
| GATGGGTAATGGCTATTGCA+TGG | 0.572522 | 7_4:-43328914 | Msa1155380:CDS |
| CTTCCAATAACAATATTCAC+AGG | 0.575190 | 7_4:+43327804 | None:intergenic |
| CTTTATGCTCAAATATGCAA+TGG | 0.575582 | 7_4:-43327928 | Msa1155380:CDS |
| CTTCTGTTTATTTCAGTGCG+TGG | 0.576078 | 7_4:-43329634 | Msa1155380:CDS |
| TCACAGATTCAAGAATGGAA+AGG | 0.577473 | 7_4:-43330954 | Msa1155380:CDS |
| CTTAGGTGGATTGATGAGAG+TGG | 0.583038 | 7_4:-43326752 | Msa1155380:three_prime_UTR |
| GGTGCAACAGGTAGCAACAA+TGG | 0.583906 | 7_4:+43326884 | None:intergenic |
| ATTTCAGGCTAGGCTCTGCA+AGG | 0.585279 | 7_4:-43329112 | Msa1155380:intron |
| TTCATATTACTTGAGAATCG+AGG | 0.587788 | 7_4:+43326708 | None:intergenic |
| CATGATTTACAGAAGTGTCA+AGG | 0.589551 | 7_4:-43330117 | Msa1155380:CDS |
| GGTTAAATGGTAAATTTGCA+TGG | 0.593042 | 7_4:+43331721 | None:intergenic |
| ATGAACCAAGATACACTACC+TGG | 0.593355 | 7_4:-43328936 | Msa1155380:CDS |
| AAACAATATAGTAGGCGTCA+TGG | 0.594407 | 7_4:-43326526 | Msa1155380:three_prime_UTR |
| CTAGCTCGAGTAATTGCAGA+TGG | 0.594460 | 7_4:-43326990 | Msa1155380:CDS |
| TCTTGAAGAAGTTTGATAAG+CGG | 0.595970 | 7_4:-43330416 | Msa1155380:CDS |
| TGGAAACATCATGTATGCCT+TGG | 0.597913 | 7_4:-43329558 | Msa1155380:CDS |
| GAAACTTCGGATGCAAGCAT+CGG | 0.606407 | 7_4:-43329051 | Msa1155380:CDS |
| AACAAGGTGTACTTGCGCGA+AGG | 0.619879 | 7_4:-43330590 | Msa1155380:CDS |
| AAACACTTGCAGCAGCTCCA+AGG | 0.625197 | 7_4:+43329699 | None:intergenic |
| GTTTCCAATCATAAGAACAA+TGG | 0.634429 | 7_4:+43329574 | None:intergenic |
| TTAGGTGGATTGATGAGAGT+GGG | 0.634451 | 7_4:-43326751 | Msa1155380:three_prime_UTR |
| GTGTCCGCTGAAGTTCTCGA+AGG | 0.637073 | 7_4:-43327284 | Msa1155380:intron |
| TAACGGAGGATTACTGTCAA+CGG | 0.640339 | 7_4:-43327024 | Msa1155380:CDS |
| TTTCAGGCTAGGCTCTGCAA+GGG | 0.642868 | 7_4:-43329111 | Msa1155380:intron |
| CAATAACAATATTCACAGGA+AGG | 0.645070 | 7_4:+43327808 | None:intergenic |
| CAAACTTCAAGTCCTCCTCA+CGG | 0.648906 | 7_4:-43326799 | Msa1155380:three_prime_UTR |
| GCGTGTCTTGACATAATAGT+CGG | 0.650195 | 7_4:+43330377 | None:intergenic |
| ATTACCTTCGAGAACTTCAG+CGG | 0.653119 | 7_4:+43327280 | None:intergenic |
| TTATAAACTCGACAACAACA+TGG | 0.655497 | 7_4:+43331664 | None:intergenic |
| TACTTGAGAATCGAGGCTCA+CGG | 0.656775 | 7_4:+43326715 | None:intergenic |
| TAAATGGTAAATTTGCATGG+TGG | 0.661807 | 7_4:+43331724 | None:intergenic |
| AGTGAGTAGTTGTCAGCCGT+AGG | 0.666095 | 7_4:+43329725 | None:intergenic |
| ACAATGGTACTGAATATGAG+AGG | 0.672091 | 7_4:+43329590 | None:intergenic |
| TGAGTTGAGATCATAGGCCA+AGG | 0.675432 | 7_4:+43329541 | None:intergenic |
| GAACATCAATTTGTGCACAA+AGG | 0.675575 | 7_4:-43331606 | Msa1155380:intron |
| TTATTTCTACTTGAACAACA+AGG | 0.683628 | 7_4:-43330606 | Msa1155380:CDS |
| ATGTCATCAAGGCTTTCTCG+CGG | 0.694258 | 7_4:-43327053 | Msa1155380:CDS |
| CAGGAAGGACAGTAAGACCA+AGG | 0.701524 | 7_4:+43327823 | None:intergenic |
| AAGACAGGTTCTAAGGCACG+TGG | 0.729090 | 7_4:-43330331 | Msa1155380:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAATTAATTTAAATTTT+TGG | + | chr7_4:43330471-43330490 | None:intergenic | 0.0% |
| !! | TATTTATTACAATAATTCTA+GGG | + | chr7_4:43330958-43330977 | None:intergenic | 10.0% |
| !! | TTATTTATTACAATAATTCT+AGG | + | chr7_4:43330959-43330978 | None:intergenic | 10.0% |
| !! | TACTAATGTTACAAAATATA+AGG | - | chr7_4:43327931-43327950 | Msa1155380:CDS | 15.0% |
| !! | AAATGAATCAATAATATTTC+AGG | - | chr7_4:43329071-43329090 | Msa1155380:CDS | 15.0% |
| !!! | TCTTAATAATCGATTTAATT+TGG | - | chr7_4:43329517-43329536 | Msa1155380:CDS | 15.0% |
| !!! | TTCAATATTTCTAAATGATT+AGG | - | chr7_4:43329928-43329947 | Msa1155380:CDS | 15.0% |
| !! | TAAAATAGTATTCTGTTATA+AGG | + | chr7_4:43330318-43330337 | None:intergenic | 15.0% |
| !!! | TAACAGAATACTATTTTATT+TGG | - | chr7_4:43330320-43330339 | Msa1155380:intron | 15.0% |
| !! | ACATATTGTTGAATAAAATA+TGG | + | chr7_4:43330541-43330560 | None:intergenic | 15.0% |
| !!! | GTAGTAATTTTAAAATCTTA+AGG | - | chr7_4:43330559-43330578 | Msa1155380:CDS | 15.0% |
| !! | TGTAATAAATAAAACATGAA+TGG | - | chr7_4:43330967-43330986 | Msa1155380:CDS | 15.0% |
| !! | TTTAAAGATAGACAAAAATT+AGG | + | chr7_4:43331044-43331063 | None:intergenic | 15.0% |
| !! | TTTCATAAAAAGTGGTTAAA+TGG | + | chr7_4:43326493-43326512 | None:intergenic | 20.0% |
| !! | TCAAAAAGTTTCATAAAAAG+TGG | + | chr7_4:43326501-43326520 | None:intergenic | 20.0% |
| !!! | AAAATCAGCATTTTCTATTT+TGG | - | chr7_4:43326720-43326739 | Msa1155380:three_prime_UTR | 20.0% |
| !!! | CATGTTATTTTTGTCATTTA+TGG | - | chr7_4:43326787-43326806 | Msa1155380:three_prime_UTR | 20.0% |
| !! | AAATTAAACCTTGTAAGAAT+TGG | + | chr7_4:43327108-43327127 | None:intergenic | 20.0% |
| !! | TAGCTTGAAAATATTGTTTA+AGG | - | chr7_4:43327165-43327184 | Msa1155380:intron | 20.0% |
| !!! | AGAAATGTTTTGTTTAATTC+AGG | - | chr7_4:43327312-43327331 | Msa1155380:CDS | 20.0% |
| !! | ATATACAAAGATCACATAAA+AGG | + | chr7_4:43327977-43327996 | None:intergenic | 20.0% |
| !!! | ACACTTTTTTGTTTTTTGTA+AGG | - | chr7_4:43328727-43328746 | Msa1155380:intron | 20.0% |
| !!! | CACTTTTTTGTTTTTTGTAA+GGG | - | chr7_4:43328728-43328747 | Msa1155380:intron | 20.0% |
| !!! | ATCATGTCATGAAAATTTTA+TGG | + | chr7_4:43328795-43328814 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTCTTATCTTATT+AGG | - | chr7_4:43328821-43328840 | Msa1155380:intron | 20.0% |
| !! | TCTAAACAAAATTTCTGTTA+AGG | + | chr7_4:43328945-43328964 | None:intergenic | 20.0% |
| !! | CAACTTATAAATCCTAAAAT+CGG | + | chr7_4:43329239-43329258 | None:intergenic | 20.0% |
| !! | CATATAACAAAATGAATACA+TGG | + | chr7_4:43329399-43329418 | None:intergenic | 20.0% |
| !!! | TTTGTTATATGATGTCATTT+TGG | - | chr7_4:43329408-43329427 | Msa1155380:intron | 20.0% |
| !!! | TAATCGATTTAATTTGGTTT+TGG | - | chr7_4:43329523-43329542 | Msa1155380:CDS | 20.0% |
| !!! | AATTCATTTGCTTTTTTTGA+AGG | - | chr7_4:43329559-43329578 | Msa1155380:CDS | 20.0% |
| !! | CATATTGTTCATATTGAAAA+AGG | + | chr7_4:43330160-43330179 | None:intergenic | 20.0% |
| !!! | TAACGATGAATGTTTTTATT+AGG | - | chr7_4:43330231-43330250 | Msa1155380:intron | 20.0% |
| !! | AGGAATTGCTTTAATTATAT+TGG | - | chr7_4:43330579-43330598 | Msa1155380:CDS | 20.0% |
| !! | AGTTTATGCACAAATTAAAA+TGG | - | chr7_4:43330746-43330765 | Msa1155380:CDS | 20.0% |
| !! | CATATTGAATTACTGAATAA+GGG | + | chr7_4:43330871-43330890 | None:intergenic | 20.0% |
| !! | ACATATTGAATTACTGAATA+AGG | + | chr7_4:43330872-43330891 | None:intergenic | 20.0% |
| !! | TATTCAGTAATTCAATATGT+TGG | - | chr7_4:43330872-43330891 | Msa1155380:intron | 20.0% |
| !!! | AAAATTAGGTATTGTTCTAT+CGG | + | chr7_4:43331030-43331049 | None:intergenic | 20.0% |
| !!! | TCAAGTAATATGAAACTTTT+TGG | - | chr7_4:43331499-43331518 | Msa1155380:intron | 20.0% |
| !! | AAATATATACACTTCTATTC+TGG | + | chr7_4:43331529-43331548 | None:intergenic | 20.0% |
| ! | CAGTTAGAAAGTTCAAATAT+TGG | + | chr7_4:43326623-43326642 | None:intergenic | 25.0% |
| ! | ATAATTGAGCTACACTAATT+TGG | - | chr7_4:43327007-43327026 | Msa1155380:CDS | 25.0% |
| ! | CTTCAATTACAACAATATCA+TGG | + | chr7_4:43327049-43327068 | None:intergenic | 25.0% |
| !! | TTTGATTTCAAAGAAGAAAG+AGG | - | chr7_4:43327075-43327094 | Msa1155380:CDS | 25.0% |
| ! | TTGATTTCAAAGAAGAAAGA+GGG | - | chr7_4:43327076-43327095 | Msa1155380:CDS | 25.0% |
| ! | AAACAAAACATTTCTGACTT+TGG | + | chr7_4:43327307-43327326 | None:intergenic | 25.0% |
| !!! | TTATTTCTACTTGAACAACA+AGG | - | chr7_4:43327592-43327611 | Msa1155380:intron | 25.0% |
| ! | ACTTTGATAGATTCAAGAAT+TGG | + | chr7_4:43328260-43328279 | None:intergenic | 25.0% |
| !! | AACAAATTTCCTTCAGTTTT+TGG | - | chr7_4:43328304-43328323 | Msa1155380:intron | 25.0% |
| !! | ACAAATTTCCTTCAGTTTTT+GGG | - | chr7_4:43328305-43328324 | Msa1155380:intron | 25.0% |
| ! | TTCAGATTCTGGTATATTAT+AGG | - | chr7_4:43328857-43328876 | Msa1155380:CDS | 25.0% |
| ! | AATCAATAATATTTCAGGCT+AGG | - | chr7_4:43329076-43329095 | Msa1155380:CDS | 25.0% |
| !!! | TTATATGATGTCATTTTGGT+GGG | - | chr7_4:43329412-43329431 | Msa1155380:intron | 25.0% |
| ! | GCTTATTTAAGCTTATTGAA+TGG | + | chr7_4:43329748-43329767 | None:intergenic | 25.0% |
| ! | TTAAATAAGCAAATCCAATC+AGG | - | chr7_4:43329758-43329777 | Msa1155380:CDS | 25.0% |
| ! | TATATAACAGGTTAACTTCA+TGG | - | chr7_4:43329785-43329804 | Msa1155380:CDS | 25.0% |
| ! | TCAATACTAAAACTTTGATC+TGG | + | chr7_4:43329841-43329860 | None:intergenic | 25.0% |
| !!! | GTTTTAGTATTGAAAGAAAG+TGG | - | chr7_4:43329848-43329867 | Msa1155380:CDS | 25.0% |
| ! | TGAATCTAAGAGATAAACTA+TGG | + | chr7_4:43329892-43329911 | None:intergenic | 25.0% |
| ! | CATATTGAAAAAGGTTCATA+AGG | + | chr7_4:43330151-43330170 | None:intergenic | 25.0% |
| ! | TTTCATCTTCAAAAATCTCA+AGG | - | chr7_4:43330685-43330704 | Msa1155380:intron | 25.0% |
| ! | CTGAATAAGGGATTAATATA+TGG | + | chr7_4:43330859-43330878 | None:intergenic | 25.0% |
| ! | ATAAAACATGAATGGATAGA+AGG | - | chr7_4:43330975-43330994 | Msa1155380:CDS | 25.0% |
| !!! | TCATTTTTGATAGAAGTGAA+AGG | + | chr7_4:43331126-43331145 | None:intergenic | 25.0% |
| ! | TATCAAAAATGATGTCATCA+AGG | - | chr7_4:43331134-43331153 | Msa1155380:five_prime_UTR | 25.0% |
| ! | ATGGTACAATAACAATTTCA+GGG | - | chr7_4:43331227-43331246 | Msa1155380:intron | 25.0% |
| !! | ACATTTAGAAATGTTTGCTA+AGG | - | chr7_4:43331562-43331581 | Msa1155380:intron | 25.0% |
| !! | TTTCTTTTTACCTATTCTAG+AGG | - | chr7_4:43331595-43331614 | Msa1155380:intron | 25.0% |
| ! | TTGCATGAAAACAATATAGT+AGG | - | chr7_4:43331664-43331683 | Msa1155380:five_prime_UTR | 25.0% |
| ! | ACACATAAATACTTGAAACT+AGG | + | chr7_4:43331711-43331730 | None:intergenic | 25.0% |
| ! | TTTCTTGCTTAGAAAAAAAG+AGG | - | chr7_4:43331756-43331775 | Msa1155380:five_prime_UTR | 25.0% |
| ! | TTCTTGCTTAGAAAAAAAGA+GGG | - | chr7_4:43331757-43331776 | Msa1155380:five_prime_UTR | 25.0% |
| TAAATGGTAAATTTGCATGG+TGG | + | chr7_4:43326477-43326496 | None:intergenic | 30.0% | |
| GGTTAAATGGTAAATTTGCA+TGG | + | chr7_4:43326480-43326499 | None:intergenic | 30.0% | |
| TTATAAACTCGACAACAACA+TGG | + | chr7_4:43326537-43326556 | None:intergenic | 30.0% | |
| AAGCATATTCTTCATTTGTG+CGG | - | chr7_4:43326746-43326765 | Msa1155380:three_prime_UTR | 30.0% | |
| ATAGTGAATCTTAGTGATCA+TGG | - | chr7_4:43326836-43326855 | Msa1155380:three_prime_UTR | 30.0% | |
| TAGTGAATCTTAGTGATCAT+GGG | - | chr7_4:43326837-43326856 | Msa1155380:three_prime_UTR | 30.0% | |
| !!! | TGTTTTTTCAGTGCACAATA+TGG | - | chr7_4:43327195-43327214 | Msa1155380:intron | 30.0% |
| TCAGATATCTTTGAACTATC+TGG | + | chr7_4:43327676-43327695 | None:intergenic | 30.0% | |
| TCTTGAAGAAGTTTGATAAG+CGG | - | chr7_4:43327782-43327801 | Msa1155380:CDS | 30.0% | |
| CATTAAGCATGATATAGTCA+GGG | + | chr7_4:43327905-43327924 | None:intergenic | 30.0% | |
| ACATTAAGCATGATATAGTC+AGG | + | chr7_4:43327906-43327925 | None:intergenic | 30.0% | |
| ! | TGAGTAAACCAAAAGTACAA+TGG | + | chr7_4:43328169-43328188 | None:intergenic | 30.0% |
| TTACTCATACGCAAAATCTA+AGG | - | chr7_4:43328182-43328201 | Msa1155380:CDS | 30.0% | |
| ! | TATTCTTCCAACTTTTGATG+AGG | - | chr7_4:43328205-43328224 | Msa1155380:CDS | 30.0% |
| ! | TCAACAATGTTTTCTTCAGA+TGG | + | chr7_4:43328374-43328393 | None:intergenic | 30.0% |
| TACTTACATCATTGTACCTA+CGG | - | chr7_4:43328457-43328476 | Msa1155380:intron | 30.0% | |
| AGTACCATTGTTCTTATGAT+TGG | - | chr7_4:43328620-43328639 | Msa1155380:intron | 30.0% | |
| GTTTCCAATCATAAGAACAA+TGG | + | chr7_4:43328627-43328646 | None:intergenic | 30.0% | |
| ! | GACTTCAAGTTAGCAAAAAT+TGG | + | chr7_4:43329040-43329059 | None:intergenic | 30.0% |
| !!! | GTTATATGATGTCATTTTGG+TGG | - | chr7_4:43329411-43329430 | Msa1155380:intron | 30.0% |
| GCCAAACATTTATACTAGTT+CGG | - | chr7_4:43329607-43329626 | Msa1155380:CDS | 30.0% | |
| ACCGAACTAGTATAAATGTT+TGG | + | chr7_4:43329611-43329630 | None:intergenic | 30.0% | |
| ACATTTATACTAGTTCGGTT+TGG | - | chr7_4:43329612-43329631 | Msa1155380:CDS | 30.0% | |
| CATTTATACTAGTTCGGTTT+GGG | - | chr7_4:43329613-43329632 | Msa1155380:CDS | 30.0% | |
| CAAACAGACTTCTTCAAAAA+AGG | + | chr7_4:43329674-43329693 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGAAGAAGTCTGTT+TGG | - | chr7_4:43329672-43329691 | Msa1155380:CDS | 30.0% |
| CTGTTATATATACACCTGAT+TGG | + | chr7_4:43329775-43329794 | None:intergenic | 30.0% | |
| CAATCAGGTGTATATATAAC+AGG | - | chr7_4:43329773-43329792 | Msa1155380:CDS | 30.0% | |
| CTTTATGCTCAAATATGCAA+TGG | - | chr7_4:43330270-43330289 | Msa1155380:intron | 30.0% | |
| CAATAACAATATTCACAGGA+AGG | + | chr7_4:43330393-43330412 | None:intergenic | 30.0% | |
| CTTCCTGTGAATATTGTTAT+TGG | - | chr7_4:43330391-43330410 | Msa1155380:CDS | 30.0% | |
| CTTCCAATAACAATATTCAC+AGG | + | chr7_4:43330397-43330416 | None:intergenic | 30.0% | |
| TGTGATGTTAGAAACTAAGT+TGG | + | chr7_4:43330606-43330625 | None:intergenic | 30.0% | |
| AAAATGGAGTTTGTACTTGA+TGG | - | chr7_4:43330762-43330781 | Msa1155380:CDS | 30.0% | |
| GATGGTACAATAACAATTTC+AGG | - | chr7_4:43331226-43331245 | Msa1155380:intron | 30.0% | |
| ATACTAATAGAGAGAGTTGT+AGG | + | chr7_4:43331338-43331357 | None:intergenic | 30.0% | |
| ! | ACAGCGTCTTATGATTTTTA+TGG | + | chr7_4:43331378-43331397 | None:intergenic | 30.0% |
| !!! | GATTTTTGAGGTATTATCTG+AGG | - | chr7_4:43331421-43331440 | Msa1155380:intron | 30.0% |
| TTCATATTACTTGAGAATCG+AGG | + | chr7_4:43331493-43331512 | None:intergenic | 30.0% | |
| !! | AAATGTTTGCTAAGGTTTTG+TGG | - | chr7_4:43331570-43331589 | Msa1155380:intron | 30.0% |
| !! | TGCATGGTGGATAATGAAAA+AGG | + | chr7_4:43326464-43326483 | None:intergenic | 35.0% |
| GAACATCAATTTGTGCACAA+AGG | - | chr7_4:43326592-43326611 | Msa1155380:three_prime_UTR | 35.0% | |
| GAGAATCACAGATTCAAGAA+TGG | - | chr7_4:43327239-43327258 | Msa1155380:intron | 35.0% | |
| TCACAGATTCAAGAATGGAA+AGG | - | chr7_4:43327244-43327263 | Msa1155380:intron | 35.0% | |
| CACAGATTCAAGAATGGAAA+GGG | - | chr7_4:43327245-43327264 | Msa1155380:intron | 35.0% | |
| GAGATATGCAGAACAAATTG+AGG | - | chr7_4:43327397-43327416 | Msa1155380:CDS | 35.0% | |
| TATGCAGAACAAATTGAGGT+TGG | - | chr7_4:43327401-43327420 | Msa1155380:intron | 35.0% | |
| TTCATTGCTGCTAGATAATC+AGG | - | chr7_4:43327457-43327476 | Msa1155380:intron | 35.0% | |
| AATACCCTTACCGAAATGTT+TGG | - | chr7_4:43327482-43327501 | Msa1155380:intron | 35.0% | |
| CAATCCAAACATTTCGGTAA+GGG | + | chr7_4:43327489-43327508 | None:intergenic | 35.0% | |
| TCAATCCAAACATTTCGGTA+AGG | + | chr7_4:43327490-43327509 | None:intergenic | 35.0% | |
| TACCGAAATGTTTGGATTGA+CGG | - | chr7_4:43327490-43327509 | Msa1155380:intron | 35.0% | |
| TACCGTCAATCCAAACATTT+CGG | + | chr7_4:43327495-43327514 | None:intergenic | 35.0% | |
| ! | CAACTTCTCTATTAGCTTCT+TGG | + | chr7_4:43327702-43327721 | None:intergenic | 35.0% |
| CAAGAAGCTAATAGAGAAGT+TGG | - | chr7_4:43327700-43327719 | Msa1155380:intron | 35.0% | |
| CAAAATGAAGAAGCCTTAAC+AGG | + | chr7_4:43327732-43327751 | None:intergenic | 35.0% | |
| ! | GTTAAGGCTTCTTCATTTTG+TGG | - | chr7_4:43327732-43327751 | Msa1155380:intron | 35.0% |
| TTTGTGGAAATGAATGCTAC+TGG | - | chr7_4:43327748-43327767 | Msa1155380:intron | 35.0% | |
| AAGAAGTTTGATAAGCGGTT+CGG | - | chr7_4:43327787-43327806 | Msa1155380:CDS | 35.0% | |
| TCATGTAGTAGTTTCTTTGC+AGG | - | chr7_4:43328011-43328030 | Msa1155380:intron | 35.0% | |
| CATGTAGTAGTTTCTTTGCA+GGG | - | chr7_4:43328012-43328031 | Msa1155380:intron | 35.0% | |
| GACACTTCTGTAAATCATGA+AGG | + | chr7_4:43328080-43328099 | None:intergenic | 35.0% | |
| !! | CATGATTTACAGAAGTGTCA+AGG | - | chr7_4:43328081-43328100 | Msa1155380:intron | 35.0% |
| CTAACTTGATGAGCATAAGA+AGG | + | chr7_4:43328132-43328151 | None:intergenic | 35.0% | |
| ! | CTCTTGATCCATTGTACTTT+TGG | - | chr7_4:43328158-43328177 | Msa1155380:CDS | 35.0% |
| AGGATATCCTCATCAAAAGT+TGG | + | chr7_4:43328215-43328234 | None:intergenic | 35.0% | |
| CCTTCAAGAAAAAAGACAGA+AGG | + | chr7_4:43328235-43328254 | None:intergenic | 35.0% | |
| !!! | CCTTCTGTCTTTTTTCTTGA+AGG | - | chr7_4:43328232-43328251 | Msa1155380:CDS | 35.0% |
| !! | CTGAAGGAAATTTGTTGAGT+TGG | + | chr7_4:43328300-43328319 | None:intergenic | 35.0% |
| ! | ATGTTTTCTTCAGATGGAGA+TGG | + | chr7_4:43328368-43328387 | None:intergenic | 35.0% |
| !! | CATGTCACTTCTTTTGAACT+TGG | - | chr7_4:43328409-43328428 | Msa1155380:intron | 35.0% |
| ! | GGCAAGCACATTTTTGTATA+TGG | - | chr7_4:43328430-43328449 | Msa1155380:intron | 35.0% |
| TGAGAGGTCTTAGATAAGAT+CGG | + | chr7_4:43328595-43328614 | None:intergenic | 35.0% | |
| ! | ACAATGGTACTGAATATGAG+AGG | + | chr7_4:43328611-43328630 | None:intergenic | 35.0% |
| TCAGTAGCAGTTCTTCTTAT+GGG | - | chr7_4:43328677-43328696 | Msa1155380:intron | 35.0% | |
| AGCATAGTTACTTCAGATTC+TGG | - | chr7_4:43328846-43328865 | Msa1155380:CDS | 35.0% | |
| TGTAACAAACAAGCAATAGC+TGG | + | chr7_4:43329214-43329233 | None:intergenic | 35.0% | |
| !! | GTTTGTTACAGACCGATTTT+AGG | - | chr7_4:43329224-43329243 | Msa1155380:intron | 35.0% |
| TCATAAGCCAAAAGATTTCC+AGG | + | chr7_4:43329349-43329368 | None:intergenic | 35.0% | |
| GGAAAAACGTTGAACTATGA+TGG | + | chr7_4:43329460-43329479 | None:intergenic | 35.0% | |
| ! | TCATAGTTCAACGTTTTTCC+AGG | - | chr7_4:43329460-43329479 | Msa1155380:intron | 35.0% |
| !!! | GCTTTTTTTGAAGGTAGTTC+TGG | - | chr7_4:43329568-43329587 | Msa1155380:CDS | 35.0% |
| AACTGAAACTGAACTGTTAG+TGG | + | chr7_4:43329644-43329663 | None:intergenic | 35.0% | |
| CTAACAGTTCAGTTTCAGTT+CGG | - | chr7_4:43329644-43329663 | Msa1155380:CDS | 35.0% | |
| AATTAGGACTGTTCATGGTT+CGG | + | chr7_4:43329712-43329731 | None:intergenic | 35.0% | |
| CTTGTAATTAGGACTGTTCA+TGG | + | chr7_4:43329717-43329736 | None:intergenic | 35.0% | |
| TGGCATACACACTTGTAATT+AGG | + | chr7_4:43329728-43329747 | None:intergenic | 35.0% | |
| ! | AAACTTTGATCTGGCTTCAT+AGG | + | chr7_4:43329832-43329851 | None:intergenic | 35.0% |
| TAAACTATGGAGCATAGGAT+GGG | + | chr7_4:43329879-43329898 | None:intergenic | 35.0% | |
| ATAAACTATGGAGCATAGGA+TGG | + | chr7_4:43329880-43329899 | None:intergenic | 35.0% | |
| AGAGATAAACTATGGAGCAT+AGG | + | chr7_4:43329884-43329903 | None:intergenic | 35.0% | |
| GCTTCTGAATTCATTAGCAA+TGG | + | chr7_4:43329994-43330013 | None:intergenic | 35.0% | |
| GCTAATGAATTCAGAAGCAA+AGG | - | chr7_4:43329996-43330015 | Msa1155380:intron | 35.0% | |
| AAGATGAAGATGGAGAAGAA+AGG | - | chr7_4:43330022-43330041 | Msa1155380:intron | 35.0% | |
| AGATGAAGATGGAGAAGAAA+GGG | - | chr7_4:43330023-43330042 | Msa1155380:intron | 35.0% | |
| TTACACCATCAGTAAAGGTA+AGG | - | chr7_4:43330121-43330140 | Msa1155380:CDS | 35.0% | |
| TTGGCTAAGATAACACTTGA+AGG | + | chr7_4:43330452-43330471 | None:intergenic | 35.0% | |
| CATCACAAAAAATCTACCTC+TGG | - | chr7_4:43330619-43330638 | Msa1155380:CDS | 35.0% | |
| TCTACTGACATCAGAAATCA+TGG | - | chr7_4:43330808-43330827 | Msa1155380:CDS | 35.0% | |
| ! | TCAGAAATCATGGTTTGCAT+TGG | - | chr7_4:43330818-43330837 | Msa1155380:CDS | 35.0% |
| !! | TGTTTTTGCTTGATCAATCC+AGG | - | chr7_4:43331094-43331113 | Msa1155380:intron | 35.0% |
| TAATACCTCAAAAATCCGTG+AGG | + | chr7_4:43331417-43331436 | None:intergenic | 35.0% | |
| !! | AGCATATTCTCCTCTAGAAT+AGG | + | chr7_4:43331608-43331627 | None:intergenic | 35.0% |
| !! | GGAGAATATGCTACTTTAAG+TGG | - | chr7_4:43331616-43331635 | Msa1155380:five_prime_UTR | 35.0% |
| AAACAATATAGTAGGCGTCA+TGG | - | chr7_4:43331672-43331691 | Msa1155380:five_prime_UTR | 35.0% | |
| TGAATCTTAGTGATCATGGG+AGG | - | chr7_4:43326840-43326859 | Msa1155380:three_prime_UTR | 40.0% | |
| GGATACTGCCAATTCTTACA+AGG | - | chr7_4:43327097-43327116 | Msa1155380:intron | 40.0% | |
| TTCTCTCAACTTCTTGCCAA+AGG | + | chr7_4:43327224-43327243 | None:intergenic | 40.0% | |
| AAAAGTCTCGGAGTACGTTA+TGG | + | chr7_4:43327439-43327458 | None:intergenic | 40.0% | |
| CTAGCAGCAATGAAAAGTCT+CGG | + | chr7_4:43327451-43327470 | None:intergenic | 40.0% | |
| ! | CTGGTTGCTGTAGAAGATTT+TGG | + | chr7_4:43327657-43327676 | None:intergenic | 40.0% |
| AAGTTGGAAGAGACCTGTTA+AGG | - | chr7_4:43327716-43327735 | Msa1155380:intron | 40.0% | |
| GCGTGTCTTGACATAATAGT+CGG | + | chr7_4:43327824-43327843 | None:intergenic | 40.0% | |
| TCCTTATTCTCAGCTAAGAC+AGG | - | chr7_4:43327852-43327871 | Msa1155380:CDS | 40.0% | |
| ACCTGTCTTAGCTGAGAATA+AGG | + | chr7_4:43327856-43327875 | None:intergenic | 40.0% | |
| GTAGTTTCTTTGCAGGGAAT+TGG | - | chr7_4:43328018-43328037 | Msa1155380:intron | 40.0% | |
| CTTGATGAGCATAAGAAGGT+TGG | + | chr7_4:43328128-43328147 | None:intergenic | 40.0% | |
| ! | CGCTTTTATCATGCAACAAG+AGG | - | chr7_4:43328334-43328353 | Msa1155380:intron | 40.0% |
| CTTCTGTTTATTTCAGTGCG+TGG | - | chr7_4:43328564-43328583 | Msa1155380:intron | 40.0% | |
| TGGAAACATCATGTATGCCT+TGG | - | chr7_4:43328640-43328659 | Msa1155380:intron | 40.0% | |
| ! | TGCTACTGAGTTGAGATCAT+AGG | + | chr7_4:43328666-43328685 | None:intergenic | 40.0% |
| CTCAGTAGCAGTTCTTCTTA+TGG | - | chr7_4:43328676-43328695 | Msa1155380:intron | 40.0% | |
| ACTTTACTTACCCGCAGAAA+AGG | + | chr7_4:43328706-43328725 | None:intergenic | 40.0% | |
| GTATACTCGAATCTTCTGCA+GGG | + | chr7_4:43328901-43328920 | None:intergenic | 40.0% | |
| AGTATACTCGAATCTTCTGC+AGG | + | chr7_4:43328902-43328921 | None:intergenic | 40.0% | |
| TATACTGTGCCGTCAATCTT+TGG | - | chr7_4:43329003-43329022 | Msa1155380:CDS | 40.0% | |
| ATACTGTGCCGTCAATCTTT+GGG | - | chr7_4:43329004-43329023 | Msa1155380:CDS | 40.0% | |
| ATTCCCTTCCCAAAGATTGA+CGG | + | chr7_4:43329015-43329034 | None:intergenic | 40.0% | |
| ACTGTGTACCGTTGAAACTT+CGG | - | chr7_4:43329134-43329153 | Msa1155380:intron | 40.0% | |
| AGCACTTGCACTAACAAAAC+CGG | + | chr7_4:43329173-43329192 | None:intergenic | 40.0% | |
| TTTGTTAGTGCAAGTGCTCT+TGG | - | chr7_4:43329175-43329194 | Msa1155380:intron | 40.0% | |
| ATGAACCAAGATACACTACC+TGG | - | chr7_4:43329262-43329281 | Msa1155380:intron | 40.0% | |
| !! | CATGGCTTGTTTATCTACTG+TGG | - | chr7_4:43329302-43329321 | Msa1155380:intron | 40.0% |
| TTCCAGGTTCCTTGAAACAA+AGG | + | chr7_4:43329333-43329352 | None:intergenic | 40.0% | |
| ! | CAAGGAACCTGGAAATCTTT+TGG | - | chr7_4:43329339-43329358 | Msa1155380:intron | 40.0% |
| TTGGCTTATGAAGCAGAAAC+AGG | - | chr7_4:43329358-43329377 | Msa1155380:intron | 40.0% | |
| ! | TTTTTCCAGGCAGTTCAGTT+TGG | - | chr7_4:43329473-43329492 | Msa1155380:intron | 40.0% |
| AAAAACCAAACTGAACTGCC+TGG | + | chr7_4:43329481-43329500 | None:intergenic | 40.0% | |
| AAACTATGGAGCATAGGATG+GGG | + | chr7_4:43329878-43329897 | None:intergenic | 40.0% | |
| GCAAAGGATCAAGATGAAGA+TGG | - | chr7_4:43330012-43330031 | Msa1155380:intron | 40.0% | |
| ! | ACCTGTTACTTCAATTGTGC+TGG | - | chr7_4:43330086-43330105 | Msa1155380:CDS | 40.0% |
| GTTGCTTACACCATCAGTAA+AGG | - | chr7_4:43330116-43330135 | Msa1155380:CDS | 40.0% | |
| ! | CACAGTGAATTTAAAGCCAG+AGG | + | chr7_4:43330638-43330657 | None:intergenic | 40.0% |
| ! | AAACTCATGAGCAACTTGCT+AGG | + | chr7_4:43330731-43330750 | None:intergenic | 40.0% |
| ! | TGGAGTTTGTACTTGATGGT+TGG | - | chr7_4:43330766-43330785 | Msa1155380:CDS | 40.0% |
| AGCGGACACAAATGTGATAA+GGG | + | chr7_4:43330903-43330922 | None:intergenic | 40.0% | |
| ATTACCTTCGAGAACTTCAG+CGG | + | chr7_4:43330921-43330940 | None:intergenic | 40.0% | |
| AGAAGTGAAAGGTTAACTCC+TGG | + | chr7_4:43331115-43331134 | None:intergenic | 40.0% | |
| TGACAGTAATCCTCCGTTAT+AGG | + | chr7_4:43331173-43331192 | None:intergenic | 40.0% | |
| TAACGGAGGATTACTGTCAA+CGG | - | chr7_4:43331174-43331193 | Msa1155380:intron | 40.0% | |
| AATTACTCGAGCTAGAGTTC+CGG | + | chr7_4:43331203-43331222 | None:intergenic | 40.0% | |
| !! | TTAGGTGGATTGATGAGAGT+GGG | - | chr7_4:43331447-43331466 | Msa1155380:intron | 40.0% |
| TTAGTGATCATGGGAGGATG+TGG | - | chr7_4:43326846-43326865 | Msa1155380:three_prime_UTR | 45.0% | |
| GTGCACAATATGGTTGCCTT+TGG | - | chr7_4:43327205-43327224 | Msa1155380:intron | 45.0% | |
| CTCAGCTAAGACAGGTTCTA+AGG | - | chr7_4:43327860-43327879 | Msa1155380:CDS | 45.0% | |
| CGTGTCTTCCCAAAAACTGA+AGG | + | chr7_4:43328316-43328335 | None:intergenic | 45.0% | |
| GACAACTACTCACTGAACCT+TGG | - | chr7_4:43328482-43328501 | Msa1155380:intron | 45.0% | |
| ! | TGAGTTGAGATCATAGGCCA+AGG | + | chr7_4:43328660-43328679 | None:intergenic | 45.0% |
| GCTTGCATCCGAAGTTTCAA+CGG | + | chr7_4:43329145-43329164 | None:intergenic | 45.0% | |
| GAAACTTCGGATGCAAGCAT+CGG | - | chr7_4:43329147-43329166 | Msa1155380:intron | 45.0% | |
| TAGTGCAAGTGCTCTTGGAA+TGG | - | chr7_4:43329180-43329199 | Msa1155380:intron | 45.0% | |
| ACCAAGATACACTACCTGGA+TGG | - | chr7_4:43329266-43329285 | Msa1155380:intron | 45.0% | |
| CCAAGATACACTACCTGGAT+GGG | - | chr7_4:43329267-43329286 | Msa1155380:intron | 45.0% | |
| TACACTACCTGGATGGGTAA+TGG | - | chr7_4:43329273-43329292 | Msa1155380:intron | 45.0% | |
| ! | GATGGGTAATGGCTATTGCA+TGG | - | chr7_4:43329284-43329303 | Msa1155380:intron | 45.0% |
| ! | GTGGTTGTGCCTTTGTTTCA+AGG | - | chr7_4:43329321-43329340 | Msa1155380:intron | 45.0% |
| ! | TGCCTTTGTTTCAAGGAACC+TGG | - | chr7_4:43329328-43329347 | Msa1155380:intron | 45.0% |
| CAGAAACAGGTATGTCAGCA+AGG | - | chr7_4:43329371-43329390 | Msa1155380:intron | 45.0% | |
| !! | GACTGTTCATGGTTCGGTTT+AGG | + | chr7_4:43329706-43329725 | None:intergenic | 45.0% |
| AACTATGGAGCATAGGATGG+GGG | + | chr7_4:43329877-43329896 | None:intergenic | 45.0% | |
| GCCAGCACAATTGAAGTAAC+AGG | + | chr7_4:43330090-43330109 | None:intergenic | 45.0% | |
| GCGTTCCTTACCTTTACTGA+TGG | + | chr7_4:43330129-43330148 | None:intergenic | 45.0% | |
| ! | AAGGAAAAGGGCTACTTTGG+TGG | + | chr7_4:43330350-43330369 | None:intergenic | 45.0% |
| TGCAAGGAAAAGGGCTACTT+TGG | + | chr7_4:43330353-43330372 | None:intergenic | 45.0% | |
| ACCAAGGCATGCAAGGAAAA+GGG | + | chr7_4:43330362-43330381 | None:intergenic | 45.0% | |
| CAGCGGACACAAATGTGATA+AGG | + | chr7_4:43330904-43330923 | None:intergenic | 45.0% | |
| ATGTCATCAAGGCTTTCTCG+CGG | - | chr7_4:43331145-43331164 | Msa1155380:five_prime_UTR | 45.0% | |
| CTTTCTCGCGGAACCTATAA+CGG | - | chr7_4:43331157-43331176 | Msa1155380:five_prime_UTR | 45.0% | |
| CTAGCTCGAGTAATTGCAGA+TGG | - | chr7_4:43331208-43331227 | Msa1155380:intron | 45.0% | |
| CAATGGATGAGATGCAGATG+AGG | + | chr7_4:43331300-43331319 | None:intergenic | 45.0% | |
| CAAACTTCAAGTCCTCCTCA+CGG | - | chr7_4:43331399-43331418 | Msa1155380:intron | 45.0% | |
| TACCTCAAAAATCCGTGAGG+AGG | + | chr7_4:43331414-43331433 | None:intergenic | 45.0% | |
| ! | AGGTATTATCTGAGGCGCTT+AGG | - | chr7_4:43331429-43331448 | Msa1155380:intron | 45.0% |
| ! | TATTATCTGAGGCGCTTAGG+TGG | - | chr7_4:43331432-43331451 | Msa1155380:intron | 45.0% |
| !! | CTTAGGTGGATTGATGAGAG+TGG | - | chr7_4:43331446-43331465 | Msa1155380:intron | 45.0% |
| TACTTGAGAATCGAGGCTCA+CGG | + | chr7_4:43331486-43331505 | None:intergenic | 45.0% | |
| AACAAGGTGTACTTGCGCGA+AGG | - | chr7_4:43327608-43327627 | Msa1155380:intron | 50.0% | |
| !! | AAGACAGGTTCTAAGGCACG+TGG | - | chr7_4:43327867-43327886 | Msa1155380:CDS | 50.0% |
| !! | CAGGGAATTGGTGCTGTTGT+GGG | - | chr7_4:43328030-43328049 | Msa1155380:intron | 50.0% |
| AGTGAGTAGTTGTCAGCCGT+AGG | + | chr7_4:43328476-43328495 | None:intergenic | 50.0% | |
| AAACACTTGCAGCAGCTCCA+AGG | + | chr7_4:43328502-43328521 | None:intergenic | 50.0% | |
| !! | AGTGTTTGCGGTGTCGTCAT+CGG | - | chr7_4:43328515-43328534 | Msa1155380:intron | 50.0% |
| ! | CTTATGGGACGCCTTTTCTG+CGG | - | chr7_4:43328692-43328711 | Msa1155380:intron | 50.0% |
| ! | TTATGGGACGCCTTTTCTGC+GGG | - | chr7_4:43328693-43328712 | Msa1155380:intron | 50.0% |
| ! | TGTGCCGTCAATCTTTGGGA+AGG | - | chr7_4:43329008-43329027 | Msa1155380:CDS | 50.0% |
| ! | GTGCCGTCAATCTTTGGGAA+GGG | - | chr7_4:43329009-43329028 | Msa1155380:CDS | 50.0% |
| ATTTCAGGCTAGGCTCTGCA+AGG | - | chr7_4:43329086-43329105 | Msa1155380:CDS | 50.0% | |
| TTTCAGGCTAGGCTCTGCAA+GGG | - | chr7_4:43329087-43329106 | Msa1155380:CDS | 50.0% | |
| AGTGCTCTTGGAATGGCTTG+TGG | - | chr7_4:43329187-43329206 | Msa1155380:intron | 50.0% | |
| CCCATCCAGGTAGTGTATCT+TGG | + | chr7_4:43329270-43329289 | None:intergenic | 50.0% | |
| GCAATAGCCATTACCCATCC+AGG | + | chr7_4:43329283-43329302 | None:intergenic | 50.0% | |
| ACTATGGAGCATAGGATGGG+GGG | + | chr7_4:43329876-43329895 | None:intergenic | 50.0% | |
| GACCAAGGCATGCAAGGAAA+AGG | + | chr7_4:43330363-43330382 | None:intergenic | 50.0% | |
| CAGTAAGACCAAGGCATGCA+AGG | + | chr7_4:43330369-43330388 | None:intergenic | 50.0% | |
| CAGGAAGGACAGTAAGACCA+AGG | + | chr7_4:43330378-43330397 | None:intergenic | 50.0% | |
| !! | GATGGTTGGCTTGTACTTGC+AGG | - | chr7_4:43330780-43330799 | Msa1155380:CDS | 50.0% |
| GGATTACTGTCAACGGAAGC+CGG | - | chr7_4:43331181-43331200 | Msa1155380:intron | 50.0% | |
| ! | AGATGCAGATGAGGAGTGCA+GGG | + | chr7_4:43331291-43331310 | None:intergenic | 50.0% |
| GGTGCAACAGGTAGCAACAA+TGG | + | chr7_4:43331317-43331336 | None:intergenic | 50.0% | |
| GAGAGAGTTGTAGGTGCAAC+AGG | + | chr7_4:43331329-43331348 | None:intergenic | 50.0% | |
| ! | GTCCTCCTCACGGATTTTTG+AGG | - | chr7_4:43331409-43331428 | Msa1155380:intron | 50.0% |
| GCGCGAAGGCTGTCACATAT+TGG | - | chr7_4:43327622-43327641 | Msa1155380:intron | 55.0% | |
| !! | GCAGGGAATTGGTGCTGTTG+TGG | - | chr7_4:43328029-43328048 | Msa1155380:intron | 55.0% |
| GGAGCTGCTGCAAGTGTTTG+CGG | - | chr7_4:43328503-43328522 | Msa1155380:intron | 55.0% | |
| !! | CGGTGTCGTCATCGGATCAA+TGG | - | chr7_4:43328523-43328542 | Msa1155380:intron | 55.0% |
| CGGATCAATGGCTGTTGCAC+AGG | - | chr7_4:43328535-43328554 | Msa1155380:intron | 55.0% | |
| GCTCTGCAAGGGCTGTGAAT+AGG | - | chr7_4:43329098-43329117 | Msa1155380:CDS | 55.0% | |
| ! | GCCCTTTTCCTTGCATGCCT+TGG | - | chr7_4:43330358-43330377 | Msa1155380:CDS | 55.0% |
| GTGTCCGCTGAAGTTCTCGA+AGG | - | chr7_4:43330914-43330933 | Msa1155380:intron | 55.0% | |
| TCTCGCGGAACCTATAACGG+AGG | - | chr7_4:43331160-43331179 | Msa1155380:five_prime_UTR | 55.0% | |
| ! | GATGAGGAGTGCAGGGAGTA+AGG | + | chr7_4:43331284-43331303 | None:intergenic | 55.0% |
| ! | GAGATGCAGATGAGGAGTGC+AGG | + | chr7_4:43331292-43331311 | None:intergenic | 55.0% |
| !! | CTTCGGATGCAAGCATCGGC+CGG | - | chr7_4:43329151-43329170 | Msa1155380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 43326432 | 43331788 | 43326432 | ID=Msa1155380;Name=Msa1155380 |
| chr7_4 | mRNA | 43326432 | 43331788 | 43326432 | ID=Msa1155380-mRNA-1;Parent=Msa1155380;Name=Msa1155380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=273|0.90|0.91|1|0.72|0.66|12|434|708 |
| chr7_4 | exon | 43326432 | 43327104 | 43326432 | ID=Msa1155380-mRNA-1:exon:10911;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43327285 | 43327418 | 43327285 | ID=Msa1155380-mRNA-1:exon:10910;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43327777 | 43327967 | 43327777 | ID=Msa1155380-mRNA-1:exon:10909;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43328083 | 43328270 | 43328083 | ID=Msa1155380-mRNA-1:exon:10908;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43328841 | 43329127 | 43328841 | ID=Msa1155380-mRNA-1:exon:10907;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43329506 | 43329966 | 43329506 | ID=Msa1155380-mRNA-1:exon:10906;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43330074 | 43330214 | 43330074 | ID=Msa1155380-mRNA-1:exon:10905;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43330332 | 43330643 | 43330332 | ID=Msa1155380-mRNA-1:exon:10904;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43330742 | 43330862 | 43330742 | ID=Msa1155380-mRNA-1:exon:10903;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43330954 | 43331014 | 43330954 | ID=Msa1155380-mRNA-1:exon:10902;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43331102 | 43331184 | 43331102 | ID=Msa1155380-mRNA-1:exon:10901;Parent=Msa1155380-mRNA-1 |
| chr7_4 | exon | 43331607 | 43331788 | 43331607 | ID=Msa1155380-mRNA-1:exon:10900;Parent=Msa1155380-mRNA-1 |
| chr7_4 | five_prime_UTR | 43331607 | 43331788 | 43331607 | ID=Msa1155380-mRNA-1:five_prime_utr;Parent=Msa1155380-mRNA-1 |
| chr7_4 | five_prime_UTR | 43331102 | 43331184 | 43331102 | ID=Msa1155380-mRNA-1:five_prime_utr;Parent=Msa1155380-mRNA-1 |
| chr7_4 | five_prime_UTR | 43331007 | 43331014 | 43331007 | ID=Msa1155380-mRNA-1:five_prime_utr;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43330954 | 43331006 | 43330954 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43330742 | 43330862 | 43330742 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43330332 | 43330643 | 43330332 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43330074 | 43330214 | 43330074 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43329506 | 43329966 | 43329506 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43328841 | 43329127 | 43328841 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43328083 | 43328270 | 43328083 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43327777 | 43327967 | 43327777 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43327285 | 43327418 | 43327285 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | CDS | 43326866 | 43327104 | 43326866 | ID=Msa1155380-mRNA-1:cds;Parent=Msa1155380-mRNA-1 |
| chr7_4 | three_prime_UTR | 43326432 | 43326865 | 43326432 | ID=Msa1155380-mRNA-1:three_prime_utr;Parent=Msa1155380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
