Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159600 | XP_003625128.1 | 95.564 | 541 | 22 | 1 | 1 | 539 | 1 | 541 | 0.0 | 1072 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159600 | sp|Q9SS43|MUC21_ARATH | 55.912 | 499 | 175 | 10 | 35 | 527 | 34 | 493 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159600 | G7KTG8 | 95.564 | 541 | 22 | 1 | 1 | 539 | 1 | 541 | 0.0 | 1072 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0697570 | Msa1159600 | 0.800488 | 1.407681e-48 | -8.615850e-47 |
| Msa0799620 | Msa1159600 | 0.821553 | 3.797120e-53 | -8.615850e-47 |
| Msa1034390 | Msa1159600 | 0.912740 | 1.377262e-83 | -8.615850e-47 |
| Msa1074140 | Msa1159600 | 0.915426 | 5.973589e-85 | -8.615850e-47 |
| Msa1114620 | Msa1159600 | 0.938054 | 1.265838e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159600 | MtrunA17_Chr7g0257291 | 95.564 | 541 | 22 | 1 | 1 | 539 | 1 | 541 | 0.0 | 1072 |
| Msa1159600 | MtrunA17_Chr5g0418341 | 35.601 | 441 | 226 | 7 | 97 | 531 | 17 | 405 | 2.90e-84 | 267 |
| Msa1159600 | MtrunA17_Chr8g0392591 | 35.225 | 423 | 222 | 8 | 106 | 524 | 148 | 522 | 9.34e-82 | 264 |
| Msa1159600 | MtrunA17_Chr5g0418331 | 36.702 | 376 | 198 | 8 | 161 | 531 | 30 | 370 | 6.19e-75 | 242 |
| Msa1159600 | MtrunA17_Chr5g0398231 | 30.214 | 374 | 167 | 9 | 109 | 477 | 33 | 317 | 1.81e-50 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1159600 | AT2G41640.1 | 57.895 | 532 | 177 | 6 | 1 | 529 | 1 | 488 | 0.0 | 624 |
| Msa1159600 | AT2G41640.2 | 58.462 | 520 | 169 | 6 | 1 | 517 | 1 | 476 | 0.0 | 613 |
| Msa1159600 | AT2G41640.3 | 64.120 | 432 | 114 | 3 | 99 | 529 | 4 | 395 | 0.0 | 584 |
| Msa1159600 | AT3G57380.1 | 56.330 | 545 | 179 | 10 | 6 | 538 | 3 | 500 | 0.0 | 581 |
| Msa1159600 | AT3G10320.1 | 55.912 | 499 | 175 | 10 | 35 | 527 | 34 | 493 | 0.0 | 546 |
| Msa1159600 | AT3G57380.2 | 61.021 | 431 | 122 | 6 | 115 | 538 | 1 | 392 | 0.0 | 528 |
| Msa1159600 | AT3G57380.3 | 61.021 | 431 | 122 | 6 | 115 | 538 | 1 | 392 | 0.0 | 528 |
| Msa1159600 | AT2G03370.2 | 35.730 | 445 | 221 | 8 | 97 | 533 | 66 | 453 | 4.53e-92 | 289 |
| Msa1159600 | AT2G03370.1 | 35.730 | 445 | 221 | 8 | 97 | 533 | 64 | 451 | 4.71e-92 | 289 |
| Msa1159600 | AT2G03360.1 | 35.586 | 444 | 225 | 8 | 97 | 533 | 61 | 450 | 1.90e-88 | 280 |
| Msa1159600 | AT2G03360.2 | 35.586 | 444 | 225 | 8 | 97 | 533 | 65 | 454 | 1.97e-88 | 280 |
| Msa1159600 | AT3G18180.1 | 31.163 | 430 | 231 | 9 | 101 | 524 | 93 | 463 | 3.60e-67 | 225 |
| Msa1159600 | AT3G18170.1 | 31.529 | 425 | 230 | 7 | 109 | 524 | 10 | 382 | 2.15e-64 | 215 |
| Msa1159600 | AT3G18170.2 | 31.529 | 425 | 230 | 7 | 109 | 524 | 161 | 533 | 4.27e-63 | 216 |
Find 94 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCTTGTTAATGCTTTC+AGG | 0.044050 | 7_4:+49244844 | None:intergenic |
| TAAGGTCTAATTTAACATTT+TGG | 0.163748 | 7_4:+49244788 | None:intergenic |
| CTAGAGACAATAACCAATTT+TGG | 0.203861 | 7_4:+49245225 | None:intergenic |
| ACTTGAATGAACACAGATTT+AGG | 0.221082 | 7_4:+49245015 | None:intergenic |
| TTGTTCCTCTTGGTACTAAT+TGG | 0.239064 | 7_4:-49244993 | Msa1159600:CDS |
| TGCACGAACGAAACCAAAAT+TGG | 0.247732 | 7_4:-49245238 | Msa1159600:CDS |
| TGTTGATTTCAGAAACCTTT+TGG | 0.250209 | 7_4:-49245397 | Msa1159600:CDS |
| GCTTATTCGCCTCGGATAAA+AGG | 0.255535 | 7_4:-49245369 | Msa1159600:CDS |
| TGAGAATTTGCTAGTGAAAA+TGG | 0.272170 | 7_4:-49245178 | Msa1159600:CDS |
| CTTATGAGTACACAGTTCTT+AGG | 0.273170 | 7_4:-49244738 | Msa1159600:CDS |
| GTCTCCCACTTTCTAGTATA+GGG | 0.278642 | 7_4:+49245813 | None:intergenic |
| GTGAAGGGTTTGTGAGGTTT+TGG | 0.285617 | 7_4:+49247038 | None:intergenic |
| AAGAGAAAAGACAATAGTTT+TGG | 0.286461 | 7_4:+49246890 | None:intergenic |
| GTGAAAATGGCAGAGGAAAT+TGG | 0.288444 | 7_4:-49245165 | Msa1159600:CDS |
| AAACCCTTCACCTTCCAAAA+TGG | 0.293776 | 7_4:-49247026 | Msa1159600:exon |
| CTTTCAGGGTCTCTCAAAAT+AGG | 0.299027 | 7_4:+49244859 | None:intergenic |
| GAATGGTGGATCACGAAATA+TGG | 0.319520 | 7_4:-49245567 | Msa1159600:CDS |
| ATGTTAAATTAGACCTTAGA+AGG | 0.322345 | 7_4:-49244783 | Msa1159600:CDS |
| TTCAAACCAAGCTTCCTTGC+AGG | 0.322763 | 7_4:+49244946 | None:intergenic |
| TTGAGACCAACAATGGCTTC+AGG | 0.331391 | 7_4:+49245474 | None:intergenic |
| AATTAGACCTTAGAAGGTTC+AGG | 0.335913 | 7_4:-49244777 | Msa1159600:CDS |
| CTTTCTTGTTAATGCTTTCA+GGG | 0.346346 | 7_4:+49244845 | None:intergenic |
| TGTTCCTCTTGGTACTAATT+GGG | 0.362453 | 7_4:-49244992 | Msa1159600:CDS |
| TTCATTCAAGTTGTTCCTCT+TGG | 0.365056 | 7_4:-49245003 | Msa1159600:CDS |
| TGTTTCCCTGAAGCCATTGT+TGG | 0.377591 | 7_4:-49245480 | Msa1159600:CDS |
| TTCACAGTGGTTGGTGTTGA+AGG | 0.385507 | 7_4:+49244704 | None:intergenic |
| TTATCTTCGCTAAAATTAAT+CGG | 0.394156 | 7_4:+49245513 | None:intergenic |
| GCGAATAAGCTTTGTCCAAA+AGG | 0.394660 | 7_4:+49245382 | None:intergenic |
| TGTCTCCCACTTTCTAGTAT+AGG | 0.400966 | 7_4:+49245812 | None:intergenic |
| ACGGTGGTGATGAACCATTT+TGG | 0.409686 | 7_4:+49247012 | None:intergenic |
| ACCTTAGAAGGTTCAGGAAA+AGG | 0.416677 | 7_4:-49244771 | Msa1159600:CDS |
| ACCACTTCTATCACAACATA+TGG | 0.435687 | 7_4:+49246004 | None:intergenic |
| AGCCGTGGATTCCGCATTGA+TGG | 0.443208 | 7_4:-49245436 | Msa1159600:CDS |
| ATATGCTCTTCAGTTTCTAC+TGG | 0.444078 | 7_4:-49246616 | Msa1159600:intron |
| TGGGCTGCAGATACTTATTA+CGG | 0.445783 | 7_4:-49244973 | Msa1159600:CDS |
| ATTGAATCTCATTTCAAAGA+AGG | 0.447770 | 7_4:-49245766 | Msa1159600:CDS |
| GACGTTATGATTGGTGTTCA+TGG | 0.453758 | 7_4:-49245069 | Msa1159600:CDS |
| TGAGACCAACAATGGCTTCA+GGG | 0.454768 | 7_4:+49245475 | None:intergenic |
| GCCACAACAATAACGTTTCA+AGG | 0.455624 | 7_4:-49245899 | Msa1159600:CDS |
| GAGGTTTCTGATTCCGATGA+TGG | 0.458312 | 7_4:+49245279 | None:intergenic |
| TCTTCATCTTTGATATACTC+TGG | 0.459293 | 7_4:+49246968 | None:intergenic |
| TTCACAACATTTCAACAAGA+AGG | 0.461145 | 7_4:-49245616 | Msa1159600:CDS |
| GGCGAACCTGCAAGGAAGCT+TGG | 0.468064 | 7_4:-49244952 | Msa1159600:CDS |
| TTCTCGAATGGAGGCTACAC+TGG | 0.476480 | 7_4:-49245687 | Msa1159600:CDS |
| TCATATAAAGAGCTTTCCTT+AGG | 0.480215 | 7_4:+49244901 | None:intergenic |
| AATGAGATTCAATTCATCAA+TGG | 0.480428 | 7_4:+49245776 | None:intergenic |
| CATGTATATCAACACCATCT+TGG | 0.485415 | 7_4:+49246644 | None:intergenic |
| AAGCTTGGTTTGAAATACAT+TGG | 0.491787 | 7_4:-49244937 | Msa1159600:CDS |
| AATGAAAGCGACGTTATGAT+TGG | 0.497226 | 7_4:-49245078 | Msa1159600:CDS |
| CCTGAAAGCATTAACAAGAA+AGG | 0.500548 | 7_4:-49244844 | Msa1159600:CDS |
| TCCTTGAAACGTTATTGTTG+TGG | 0.502883 | 7_4:+49245898 | None:intergenic |
| AACATAGCAACAAGAGAGAA+AGG | 0.504395 | 7_4:+49246859 | None:intergenic |
| CTGAAAGCATTAACAAGAAA+GGG | 0.509340 | 7_4:-49244843 | Msa1159600:CDS |
| AATTTCTTGCACTCCTTGTG+AGG | 0.519149 | 7_4:+49245260 | None:intergenic |
| TGGCTATGAAATTCATCCTA+AGG | 0.521370 | 7_4:-49244917 | Msa1159600:CDS |
| AGGACTATTGAAGCTAGAAA+AGG | 0.521445 | 7_4:-49245879 | Msa1159600:CDS |
| TTGGTTATTGTCTCTAGAAG+TGG | 0.526248 | 7_4:-49245219 | Msa1159600:CDS |
| TAAAGCCCTATACTAGAAAG+TGG | 0.527288 | 7_4:-49245818 | Msa1159600:CDS |
| TAGAAAAGGTGAAGATGAAG+AGG | 0.534977 | 7_4:-49245865 | Msa1159600:CDS |
| AGACGAGGAAAGAGAAGCAC+AGG | 0.538907 | 7_4:-49245337 | Msa1159600:CDS |
| TATATCAACACCATCTTGGT+TGG | 0.540099 | 7_4:+49246648 | None:intergenic |
| GTTGTAGAGGAAGATTGAAG+AGG | 0.546253 | 7_4:+49245929 | None:intergenic |
| TTCCATCAATGCGGAATCCA+CGG | 0.553948 | 7_4:+49245434 | None:intergenic |
| GAAATTCAGATAGATGAGAA+AGG | 0.555067 | 7_4:+49245538 | None:intergenic |
| AATGTCTTTATCTCCATCAT+CGG | 0.555784 | 7_4:-49245292 | Msa1159600:CDS |
| TGGACAAAGCTTATTCGCCT+CGG | 0.561151 | 7_4:-49245377 | Msa1159600:CDS |
| ACATCACAACCTTGAACACT+AGG | 0.565753 | 7_4:+49245735 | None:intergenic |
| TGATACTTGAATATCATGAA+TGG | 0.565861 | 7_4:-49245584 | Msa1159600:CDS |
| TGGAAGGTGAAGGGTTTGTG+AGG | 0.572042 | 7_4:+49247032 | None:intergenic |
| TTTGCTAGTGAAAATGGCAG+AGG | 0.583094 | 7_4:-49245172 | Msa1159600:CDS |
| AATTCATGATGAACTAGCCG+TGG | 0.588732 | 7_4:-49245451 | Msa1159600:CDS |
| AACAAGAGAGAAAGGTGATG+AGG | 0.590096 | 7_4:+49246867 | None:intergenic |
| ATGGGAAAATTCACAGTGGT+TGG | 0.595256 | 7_4:+49244695 | None:intergenic |
| AAAGCATTAACAAGAAAGGG+TGG | 0.599234 | 7_4:-49244840 | Msa1159600:CDS |
| CTTATTACGGCGAACCTGCA+AGG | 0.602890 | 7_4:-49244960 | Msa1159600:CDS |
| AAGCATTAACAAGAAAGGGT+GGG | 0.613905 | 7_4:-49244839 | Msa1159600:CDS |
| GTGGATTCCGCATTGATGGA+AGG | 0.622255 | 7_4:-49245432 | Msa1159600:CDS |
| AAAGTGGGAGACAAGTGTCA+TGG | 0.623072 | 7_4:-49245802 | Msa1159600:CDS |
| GAAAATGATGCCAACCAAGA+TGG | 0.628586 | 7_4:-49246658 | Msa1159600:CDS |
| TACTTGAATATCATGAATGG+TGG | 0.629903 | 7_4:-49245581 | Msa1159600:CDS |
| TGTGGCTTATTGAGTTGTAG+AGG | 0.630051 | 7_4:+49245916 | None:intergenic |
| AAAGCCCTATACTAGAAAGT+GGG | 0.635292 | 7_4:-49245817 | Msa1159600:CDS |
| TTCTAAGTTGATGGTAACGG+TGG | 0.640364 | 7_4:+49246996 | None:intergenic |
| TCTGATATCTGTGTGATGAA+AGG | 0.641175 | 7_4:-49245975 | Msa1159600:CDS |
| TCTTCGCTAAAATTAATCGG+TGG | 0.642329 | 7_4:+49245516 | None:intergenic |
| ACCATATGTTGTGATAGAAG+TGG | 0.645949 | 7_4:-49246005 | Msa1159600:CDS |
| TGTTGTGAAGTGATGTACAA+AGG | 0.651312 | 7_4:+49245630 | None:intergenic |
| TTTGTTACCTTCCATCAATG+CGG | 0.673569 | 7_4:+49245425 | None:intergenic |
| GTGTATCACGAATTCAACGA+TGG | 0.678441 | 7_4:-49245660 | Msa1159600:CDS |
| AAAAGGACTAATTCAAGACG+AGG | 0.679852 | 7_4:-49245352 | Msa1159600:CDS |
| GCAGCCCAATTAGTACCAAG+AGG | 0.687233 | 7_4:+49244988 | None:intergenic |
| TCATCACACAGATATCAGAA+CGG | 0.725384 | 7_4:+49245979 | None:intergenic |
| TCGGAATCAGAAACCTCACA+AGG | 0.728070 | 7_4:-49245273 | Msa1159600:CDS |
| TGGAATGGGAAAATTCACAG+TGG | 0.794884 | 7_4:+49244691 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAGATAAAGAAAAAGA+TGG | + | chr7_4:49244964-49244983 | None:intergenic | 15.0% |
| !!! | ATTCATTATAATGATTTTCA+AGG | - | chr7_4:49245441-49245460 | Msa1159600:CDS | 15.0% |
| !!! | TTCATTATAATGATTTTCAA+GGG | - | chr7_4:49245442-49245461 | Msa1159600:CDS | 15.0% |
| !!! | AATTTAAAGTTGAATTGTTT+GGG | + | chr7_4:49245625-49245644 | None:intergenic | 15.0% |
| !!! | TAATTTAAAGTTGAATTGTT+TGG | + | chr7_4:49245626-49245645 | None:intergenic | 15.0% |
| !! | AATGTTAAACAATTAGAATA+TGG | + | chr7_4:49245674-49245693 | None:intergenic | 15.0% |
| !! | AAAATAGATAAAGAAAAAGA+TGG | + | chr7_4:49244964-49244983 | None:intergenic | 15.0% |
| !!! | ATTCATTATAATGATTTTCA+AGG | - | chr7_4:49245441-49245460 | Msa1159600:CDS | 15.0% |
| !!! | TTCATTATAATGATTTTCAA+GGG | - | chr7_4:49245442-49245461 | Msa1159600:CDS | 15.0% |
| !!! | AATTTAAAGTTGAATTGTTT+GGG | + | chr7_4:49245625-49245644 | None:intergenic | 15.0% |
| !!! | TAATTTAAAGTTGAATTGTT+TGG | + | chr7_4:49245626-49245645 | None:intergenic | 15.0% |
| !! | AATGTTAAACAATTAGAATA+TGG | + | chr7_4:49245674-49245693 | None:intergenic | 15.0% |
| !!! | TCATTATAATGATTTTCAAG+GGG | - | chr7_4:49245443-49245462 | Msa1159600:CDS | 20.0% |
| !! | GAATATGGAAAATAACAATT+TGG | + | chr7_4:49245659-49245678 | None:intergenic | 20.0% |
| !! | AGTAAACAACAATATATAAG+GGG | + | chr7_4:49245701-49245720 | None:intergenic | 20.0% |
| !! | GAGTAAACAACAATATATAA+GGG | + | chr7_4:49245702-49245721 | None:intergenic | 20.0% |
| !! | AGAGTAAACAACAATATATA+AGG | + | chr7_4:49245703-49245722 | None:intergenic | 20.0% |
| !! | TTATCTTCGCTAAAATTAAT+CGG | + | chr7_4:49246266-49246285 | None:intergenic | 20.0% |
| !!! | TTAATTTTAGCGAAGATAAT+CGG | - | chr7_4:49246267-49246286 | Msa1159600:intron | 20.0% |
| !!! | TAAGGTCTAATTTAACATTT+TGG | + | chr7_4:49246991-49247010 | None:intergenic | 20.0% |
| !!! | TCATTATAATGATTTTCAAG+GGG | - | chr7_4:49245443-49245462 | Msa1159600:CDS | 20.0% |
| !! | GAATATGGAAAATAACAATT+TGG | + | chr7_4:49245659-49245678 | None:intergenic | 20.0% |
| !! | AGTAAACAACAATATATAAG+GGG | + | chr7_4:49245701-49245720 | None:intergenic | 20.0% |
| !! | GAGTAAACAACAATATATAA+GGG | + | chr7_4:49245702-49245721 | None:intergenic | 20.0% |
| !! | AGAGTAAACAACAATATATA+AGG | + | chr7_4:49245703-49245722 | None:intergenic | 20.0% |
| !! | TTATCTTCGCTAAAATTAAT+CGG | + | chr7_4:49246266-49246285 | None:intergenic | 20.0% |
| !!! | TTAATTTTAGCGAAGATAAT+CGG | - | chr7_4:49246267-49246286 | Msa1159600:intron | 20.0% |
| !!! | TAAGGTCTAATTTAACATTT+TGG | + | chr7_4:49246991-49247010 | None:intergenic | 20.0% |
| !! | AAGAGAAAAGACAATAGTTT+TGG | + | chr7_4:49244889-49244908 | None:intergenic | 25.0% |
| !!! | TGTTTTTTGTGTTAATCCAA+TGG | + | chr7_4:49245418-49245437 | None:intergenic | 25.0% |
| ! | GTAAACAACAATATATAAGG+GGG | + | chr7_4:49245700-49245719 | None:intergenic | 25.0% |
| !! | TTTTACTTCCTTGATTATAC+AGG | - | chr7_4:49245747-49245766 | Msa1159600:CDS | 25.0% |
| ! | AATGAGATTCAATTCATCAA+TGG | + | chr7_4:49246003-49246022 | None:intergenic | 25.0% |
| ! | ATTGAATCTCATTTCAAAGA+AGG | - | chr7_4:49246010-49246029 | Msa1159600:CDS | 25.0% |
| ! | TGATACTTGAATATCATGAA+TGG | - | chr7_4:49246192-49246211 | Msa1159600:intron | 25.0% |
| ! | ATGTTAAATTAGACCTTAGA+AGG | - | chr7_4:49246993-49247012 | Msa1159600:CDS | 25.0% |
| !! | AAGAGAAAAGACAATAGTTT+TGG | + | chr7_4:49244889-49244908 | None:intergenic | 25.0% |
| !!! | TGTTTTTTGTGTTAATCCAA+TGG | + | chr7_4:49245418-49245437 | None:intergenic | 25.0% |
| ! | GTAAACAACAATATATAAGG+GGG | + | chr7_4:49245700-49245719 | None:intergenic | 25.0% |
| !! | TTTTACTTCCTTGATTATAC+AGG | - | chr7_4:49245747-49245766 | Msa1159600:CDS | 25.0% |
| ! | AATGAGATTCAATTCATCAA+TGG | + | chr7_4:49246003-49246022 | None:intergenic | 25.0% |
| ! | ATTGAATCTCATTTCAAAGA+AGG | - | chr7_4:49246010-49246029 | Msa1159600:CDS | 25.0% |
| ! | TGATACTTGAATATCATGAA+TGG | - | chr7_4:49246192-49246211 | Msa1159600:intron | 25.0% |
| ! | ATGTTAAATTAGACCTTAGA+AGG | - | chr7_4:49246993-49247012 | Msa1159600:CDS | 25.0% |
| !!! | GTTTTCTAAGTTGATGGTAA+CGG | + | chr7_4:49244786-49244805 | None:intergenic | 30.0% |
| TCTTCATCTTTGATATACTC+TGG | + | chr7_4:49244811-49244830 | None:intergenic | 30.0% | |
| ATAAAGAAAAAGATGGTCCA+AGG | + | chr7_4:49244957-49244976 | None:intergenic | 30.0% | |
| AAATAGTAGAAGACAAACAG+AGG | + | chr7_4:49245049-49245068 | None:intergenic | 30.0% | |
| ! | CTTACCTTTTCAGATTCTTA+TGG | - | chr7_4:49245091-49245110 | Msa1159600:CDS | 30.0% |
| ! | TTCTTAGCTCGAACAATTTT+TGG | - | chr7_4:49245326-49245345 | Msa1159600:CDS | 30.0% |
| TAAATCAGACCCTGATAATT+CGG | - | chr7_4:49245534-49245553 | Msa1159600:CDS | 30.0% | |
| ATATGGTTCCTGTATAATCA+AGG | + | chr7_4:49245758-49245777 | None:intergenic | 30.0% | |
| TTCACAACATTTCAACAAGA+AGG | - | chr7_4:49246160-49246179 | Msa1159600:intron | 30.0% | |
| TACTTGAATATCATGAATGG+TGG | - | chr7_4:49246195-49246214 | Msa1159600:intron | 30.0% | |
| GAAATTCAGATAGATGAGAA+AGG | + | chr7_4:49246241-49246260 | None:intergenic | 30.0% | |
| !!! | ATGAATTTTGAGACCAACAA+TGG | + | chr7_4:49246312-49246331 | None:intergenic | 30.0% |
| !!! | TGTTGATTTCAGAAACCTTT+TGG | - | chr7_4:49246379-49246398 | Msa1159600:intron | 30.0% |
| AATGTCTTTATCTCCATCAT+CGG | - | chr7_4:49246484-49246503 | Msa1159600:intron | 30.0% | |
| ! | CTAGAGACAATAACCAATTT+TGG | + | chr7_4:49246554-49246573 | None:intergenic | 30.0% |
| !! | TGAGAATTTGCTAGTGAAAA+TGG | - | chr7_4:49246598-49246617 | Msa1159600:intron | 30.0% |
| ACCTCAAAAAACAACAGAAT+TGG | - | chr7_4:49246655-49246674 | Msa1159600:CDS | 30.0% | |
| ACTTGAATGAACACAGATTT+AGG | + | chr7_4:49246764-49246783 | None:intergenic | 30.0% | |
| ! | AAGCTTGGTTTGAAATACAT+TGG | - | chr7_4:49246839-49246858 | Msa1159600:CDS | 30.0% |
| TCATATAAAGAGCTTTCCTT+AGG | + | chr7_4:49246878-49246897 | None:intergenic | 30.0% | |
| CTTTCTTGTTAATGCTTTCA+GGG | + | chr7_4:49246934-49246953 | None:intergenic | 30.0% | |
| !! | CTGAAAGCATTAACAAGAAA+GGG | - | chr7_4:49246933-49246952 | Msa1159600:CDS | 30.0% |
| !!! | GTTTTCTAAGTTGATGGTAA+CGG | + | chr7_4:49244786-49244805 | None:intergenic | 30.0% |
| TCTTCATCTTTGATATACTC+TGG | + | chr7_4:49244811-49244830 | None:intergenic | 30.0% | |
| ATAAAGAAAAAGATGGTCCA+AGG | + | chr7_4:49244957-49244976 | None:intergenic | 30.0% | |
| AAATAGTAGAAGACAAACAG+AGG | + | chr7_4:49245049-49245068 | None:intergenic | 30.0% | |
| ! | CTTACCTTTTCAGATTCTTA+TGG | - | chr7_4:49245091-49245110 | Msa1159600:CDS | 30.0% |
| ! | TTCTTAGCTCGAACAATTTT+TGG | - | chr7_4:49245326-49245345 | Msa1159600:CDS | 30.0% |
| TAAATCAGACCCTGATAATT+CGG | - | chr7_4:49245534-49245553 | Msa1159600:CDS | 30.0% | |
| ATATGGTTCCTGTATAATCA+AGG | + | chr7_4:49245758-49245777 | None:intergenic | 30.0% | |
| TTCACAACATTTCAACAAGA+AGG | - | chr7_4:49246160-49246179 | Msa1159600:intron | 30.0% | |
| TACTTGAATATCATGAATGG+TGG | - | chr7_4:49246195-49246214 | Msa1159600:intron | 30.0% | |
| GAAATTCAGATAGATGAGAA+AGG | + | chr7_4:49246241-49246260 | None:intergenic | 30.0% | |
| !!! | ATGAATTTTGAGACCAACAA+TGG | + | chr7_4:49246312-49246331 | None:intergenic | 30.0% |
| !!! | TGTTGATTTCAGAAACCTTT+TGG | - | chr7_4:49246379-49246398 | Msa1159600:intron | 30.0% |
| AATGTCTTTATCTCCATCAT+CGG | - | chr7_4:49246484-49246503 | Msa1159600:intron | 30.0% | |
| ! | CTAGAGACAATAACCAATTT+TGG | + | chr7_4:49246554-49246573 | None:intergenic | 30.0% |
| !! | TGAGAATTTGCTAGTGAAAA+TGG | - | chr7_4:49246598-49246617 | Msa1159600:intron | 30.0% |
| ACCTCAAAAAACAACAGAAT+TGG | - | chr7_4:49246655-49246674 | Msa1159600:CDS | 30.0% | |
| ACTTGAATGAACACAGATTT+AGG | + | chr7_4:49246764-49246783 | None:intergenic | 30.0% | |
| ! | AAGCTTGGTTTGAAATACAT+TGG | - | chr7_4:49246839-49246858 | Msa1159600:CDS | 30.0% |
| TCATATAAAGAGCTTTCCTT+AGG | + | chr7_4:49246878-49246897 | None:intergenic | 30.0% | |
| CTTTCTTGTTAATGCTTTCA+GGG | + | chr7_4:49246934-49246953 | None:intergenic | 30.0% | |
| !! | CTGAAAGCATTAACAAGAAA+GGG | - | chr7_4:49246933-49246952 | Msa1159600:CDS | 30.0% |
| !! | TTTTGGAAGAAAGTGAGGTT+TGG | + | chr7_4:49244724-49244743 | None:intergenic | 35.0% |
| !! | CTGGTTGTTTTCTAAGTTGA+TGG | + | chr7_4:49244792-49244811 | None:intergenic | 35.0% |
| AACATAGCAACAAGAGAGAA+AGG | + | chr7_4:49244920-49244939 | None:intergenic | 35.0% | |
| ! | GTTTTTGCACCTTTTTTCCT+TGG | - | chr7_4:49244937-49244956 | Msa1159600:CDS | 35.0% |
| AAAGATGGTCCAAGGAAAAA+AGG | + | chr7_4:49244949-49244968 | None:intergenic | 35.0% | |
| CAGTAGTAGTTGAAGAAAGA+AGG | + | chr7_4:49245009-49245028 | None:intergenic | 35.0% | |
| AGGTCCATAAGAATCTGAAA+AGG | + | chr7_4:49245098-49245117 | None:intergenic | 35.0% | |
| TATATCAACACCATCTTGGT+TGG | + | chr7_4:49245131-49245150 | None:intergenic | 35.0% | |
| CATGTATATCAACACCATCT+TGG | + | chr7_4:49245135-49245154 | None:intergenic | 35.0% | |
| ATATGCTCTTCAGTTTCTAC+TGG | - | chr7_4:49245160-49245179 | Msa1159600:CDS | 35.0% | |
| TTCTCAGGATTACCTAACTT+CGG | - | chr7_4:49245365-49245384 | Msa1159600:CDS | 35.0% | |
| AAGAAGCAAGGAAATTCCAA+GGG | + | chr7_4:49245474-49245493 | None:intergenic | 35.0% | |
| TAAGAAGCAAGGAAATTCCA+AGG | + | chr7_4:49245475-49245494 | None:intergenic | 35.0% | |
| ACTGATCACAAGAACTTCTA+AGG | + | chr7_4:49245500-49245519 | None:intergenic | 35.0% | |
| !! | CTTGTGATCAGTCTACTTTT+TGG | - | chr7_4:49245508-49245527 | Msa1159600:CDS | 35.0% |
| ATCATGGTTGGAACAATTCT+TGG | + | chr7_4:49245589-49245608 | None:intergenic | 35.0% | |
| TAACGAGTTTGAATCATGGT+TGG | + | chr7_4:49245601-49245620 | None:intergenic | 35.0% | |
| ACCATATGTTGTGATAGAAG+TGG | - | chr7_4:49245771-49245790 | Msa1159600:CDS | 35.0% | |
| ACCACTTCTATCACAACATA+TGG | + | chr7_4:49245775-49245794 | None:intergenic | 35.0% | |
| TCATCACACAGATATCAGAA+CGG | + | chr7_4:49245800-49245819 | None:intergenic | 35.0% | |
| TCTGATATCTGTGTGATGAA+AGG | - | chr7_4:49245801-49245820 | Msa1159600:CDS | 35.0% | |
| TCCTTGAAACGTTATTGTTG+TGG | + | chr7_4:49245881-49245900 | None:intergenic | 35.0% | |
| AGGACTATTGAAGCTAGAAA+AGG | - | chr7_4:49245897-49245916 | Msa1159600:CDS | 35.0% | |
| TAGAAAAGGTGAAGATGAAG+AGG | - | chr7_4:49245911-49245930 | Msa1159600:CDS | 35.0% | |
| !! | AGGGCTTTATCTTTTCATGT+TGG | + | chr7_4:49245947-49245966 | None:intergenic | 35.0% |
| TAAAGCCCTATACTAGAAAG+TGG | - | chr7_4:49245958-49245977 | Msa1159600:CDS | 35.0% | |
| AAAGCCCTATACTAGAAAGT+GGG | - | chr7_4:49245959-49245978 | Msa1159600:CDS | 35.0% | |
| TGTTGTGAAGTGATGTACAA+AGG | + | chr7_4:49246149-49246168 | None:intergenic | 35.0% | |
| TCTTCGCTAAAATTAATCGG+TGG | + | chr7_4:49246263-49246282 | None:intergenic | 35.0% | |
| TTTGTTACCTTCCATCAATG+CGG | + | chr7_4:49246354-49246373 | None:intergenic | 35.0% | |
| ! | TGAATTAGTCCTTTTATCCG+AGG | + | chr7_4:49246419-49246438 | None:intergenic | 35.0% |
| AAAAGGACTAATTCAAGACG+AGG | - | chr7_4:49246424-49246443 | Msa1159600:intron | 35.0% | |
| ! | TTGGTTATTGTCTCTAGAAG+TGG | - | chr7_4:49246557-49246576 | Msa1159600:intron | 35.0% |
| !!! | GCCAATTCTGTTGTTTTTTG+AGG | + | chr7_4:49246659-49246678 | None:intergenic | 35.0% |
| AATGAAAGCGACGTTATGAT+TGG | - | chr7_4:49246698-49246717 | Msa1159600:intron | 35.0% | |
| !! | TTCATTCAAGTTGTTCCTCT+TGG | - | chr7_4:49246773-49246792 | Msa1159600:intron | 35.0% |
| TTGTTCCTCTTGGTACTAAT+TGG | - | chr7_4:49246783-49246802 | Msa1159600:intron | 35.0% | |
| TGTTCCTCTTGGTACTAATT+GGG | - | chr7_4:49246784-49246803 | Msa1159600:intron | 35.0% | |
| TGGCTATGAAATTCATCCTA+AGG | - | chr7_4:49246859-49246878 | Msa1159600:CDS | 35.0% | |
| CCTTTCTTGTTAATGCTTTC+AGG | + | chr7_4:49246935-49246954 | None:intergenic | 35.0% | |
| !! | CCTGAAAGCATTAACAAGAA+AGG | - | chr7_4:49246932-49246951 | Msa1159600:CDS | 35.0% |
| ! | AAAGCATTAACAAGAAAGGG+TGG | - | chr7_4:49246936-49246955 | Msa1159600:CDS | 35.0% |
| AAGCATTAACAAGAAAGGGT+GGG | - | chr7_4:49246937-49246956 | Msa1159600:CDS | 35.0% | |
| AATTAGACCTTAGAAGGTTC+AGG | - | chr7_4:49246999-49247018 | Msa1159600:CDS | 35.0% | |
| CTTATGAGTACACAGTTCTT+AGG | - | chr7_4:49247038-49247057 | Msa1159600:five_prime_UTR | 35.0% | |
| !! | TTTTGGAAGAAAGTGAGGTT+TGG | + | chr7_4:49244724-49244743 | None:intergenic | 35.0% |
| !! | CTGGTTGTTTTCTAAGTTGA+TGG | + | chr7_4:49244792-49244811 | None:intergenic | 35.0% |
| AACATAGCAACAAGAGAGAA+AGG | + | chr7_4:49244920-49244939 | None:intergenic | 35.0% | |
| ! | GTTTTTGCACCTTTTTTCCT+TGG | - | chr7_4:49244937-49244956 | Msa1159600:CDS | 35.0% |
| AAAGATGGTCCAAGGAAAAA+AGG | + | chr7_4:49244949-49244968 | None:intergenic | 35.0% | |
| CAGTAGTAGTTGAAGAAAGA+AGG | + | chr7_4:49245009-49245028 | None:intergenic | 35.0% | |
| AGGTCCATAAGAATCTGAAA+AGG | + | chr7_4:49245098-49245117 | None:intergenic | 35.0% | |
| TATATCAACACCATCTTGGT+TGG | + | chr7_4:49245131-49245150 | None:intergenic | 35.0% | |
| CATGTATATCAACACCATCT+TGG | + | chr7_4:49245135-49245154 | None:intergenic | 35.0% | |
| ATATGCTCTTCAGTTTCTAC+TGG | - | chr7_4:49245160-49245179 | Msa1159600:CDS | 35.0% | |
| TTCTCAGGATTACCTAACTT+CGG | - | chr7_4:49245365-49245384 | Msa1159600:CDS | 35.0% | |
| AAGAAGCAAGGAAATTCCAA+GGG | + | chr7_4:49245474-49245493 | None:intergenic | 35.0% | |
| TAAGAAGCAAGGAAATTCCA+AGG | + | chr7_4:49245475-49245494 | None:intergenic | 35.0% | |
| ACTGATCACAAGAACTTCTA+AGG | + | chr7_4:49245500-49245519 | None:intergenic | 35.0% | |
| !! | CTTGTGATCAGTCTACTTTT+TGG | - | chr7_4:49245508-49245527 | Msa1159600:CDS | 35.0% |
| ATCATGGTTGGAACAATTCT+TGG | + | chr7_4:49245589-49245608 | None:intergenic | 35.0% | |
| TAACGAGTTTGAATCATGGT+TGG | + | chr7_4:49245601-49245620 | None:intergenic | 35.0% | |
| ACCATATGTTGTGATAGAAG+TGG | - | chr7_4:49245771-49245790 | Msa1159600:CDS | 35.0% | |
| ACCACTTCTATCACAACATA+TGG | + | chr7_4:49245775-49245794 | None:intergenic | 35.0% | |
| TCATCACACAGATATCAGAA+CGG | + | chr7_4:49245800-49245819 | None:intergenic | 35.0% | |
| TCTGATATCTGTGTGATGAA+AGG | - | chr7_4:49245801-49245820 | Msa1159600:CDS | 35.0% | |
| TCCTTGAAACGTTATTGTTG+TGG | + | chr7_4:49245881-49245900 | None:intergenic | 35.0% | |
| AGGACTATTGAAGCTAGAAA+AGG | - | chr7_4:49245897-49245916 | Msa1159600:CDS | 35.0% | |
| TAGAAAAGGTGAAGATGAAG+AGG | - | chr7_4:49245911-49245930 | Msa1159600:CDS | 35.0% | |
| !! | AGGGCTTTATCTTTTCATGT+TGG | + | chr7_4:49245947-49245966 | None:intergenic | 35.0% |
| TAAAGCCCTATACTAGAAAG+TGG | - | chr7_4:49245958-49245977 | Msa1159600:CDS | 35.0% | |
| AAAGCCCTATACTAGAAAGT+GGG | - | chr7_4:49245959-49245978 | Msa1159600:CDS | 35.0% | |
| TGTTGTGAAGTGATGTACAA+AGG | + | chr7_4:49246149-49246168 | None:intergenic | 35.0% | |
| TCTTCGCTAAAATTAATCGG+TGG | + | chr7_4:49246263-49246282 | None:intergenic | 35.0% | |
| TTTGTTACCTTCCATCAATG+CGG | + | chr7_4:49246354-49246373 | None:intergenic | 35.0% | |
| ! | TGAATTAGTCCTTTTATCCG+AGG | + | chr7_4:49246419-49246438 | None:intergenic | 35.0% |
| AAAAGGACTAATTCAAGACG+AGG | - | chr7_4:49246424-49246443 | Msa1159600:intron | 35.0% | |
| ! | TTGGTTATTGTCTCTAGAAG+TGG | - | chr7_4:49246557-49246576 | Msa1159600:intron | 35.0% |
| !!! | GCCAATTCTGTTGTTTTTTG+AGG | + | chr7_4:49246659-49246678 | None:intergenic | 35.0% |
| AATGAAAGCGACGTTATGAT+TGG | - | chr7_4:49246698-49246717 | Msa1159600:intron | 35.0% | |
| !! | TTCATTCAAGTTGTTCCTCT+TGG | - | chr7_4:49246773-49246792 | Msa1159600:intron | 35.0% |
| TTGTTCCTCTTGGTACTAAT+TGG | - | chr7_4:49246783-49246802 | Msa1159600:intron | 35.0% | |
| TGTTCCTCTTGGTACTAATT+GGG | - | chr7_4:49246784-49246803 | Msa1159600:intron | 35.0% | |
| TGGCTATGAAATTCATCCTA+AGG | - | chr7_4:49246859-49246878 | Msa1159600:CDS | 35.0% | |
| CCTTTCTTGTTAATGCTTTC+AGG | + | chr7_4:49246935-49246954 | None:intergenic | 35.0% | |
| !! | CCTGAAAGCATTAACAAGAA+AGG | - | chr7_4:49246932-49246951 | Msa1159600:CDS | 35.0% |
| ! | AAAGCATTAACAAGAAAGGG+TGG | - | chr7_4:49246936-49246955 | Msa1159600:CDS | 35.0% |
| AAGCATTAACAAGAAAGGGT+GGG | - | chr7_4:49246937-49246956 | Msa1159600:CDS | 35.0% | |
| AATTAGACCTTAGAAGGTTC+AGG | - | chr7_4:49246999-49247018 | Msa1159600:CDS | 35.0% | |
| CTTATGAGTACACAGTTCTT+AGG | - | chr7_4:49247038-49247057 | Msa1159600:five_prime_UTR | 35.0% | |
| !!! | TGAGGTTTTGGAAGAAAGTG+AGG | + | chr7_4:49244729-49244748 | None:intergenic | 40.0% |
| AAACCCTTCACCTTCCAAAA+TGG | - | chr7_4:49244750-49244769 | Msa1159600:CDS | 40.0% | |
| !! | GAACCATTTTGGAAGGTGAA+GGG | + | chr7_4:49244756-49244775 | None:intergenic | 40.0% |
| !! | TGAACCATTTTGGAAGGTGA+AGG | + | chr7_4:49244757-49244776 | None:intergenic | 40.0% |
| !! | TGGTGATGAACCATTTTGGA+AGG | + | chr7_4:49244763-49244782 | None:intergenic | 40.0% |
| !! | TTCTAAGTTGATGGTAACGG+TGG | + | chr7_4:49244783-49244802 | None:intergenic | 40.0% |
| AACAAGAGAGAAAGGTGATG+AGG | + | chr7_4:49244912-49244931 | None:intergenic | 40.0% | |
| ! | TCTTGGTTGGCATCATTTTC+AGG | + | chr7_4:49245118-49245137 | None:intergenic | 40.0% |
| GAAAATGATGCCAACCAAGA+TGG | - | chr7_4:49245118-49245137 | Msa1159600:CDS | 40.0% | |
| TAGCAACCACATAAACCAAG+TGG | - | chr7_4:49245275-49245294 | Msa1159600:CDS | 40.0% | |
| AACCACATAAACCAAGTGGT+TGG | - | chr7_4:49245279-49245298 | Msa1159600:CDS | 40.0% | |
| ACCACATAAACCAAGTGGTT+GGG | - | chr7_4:49245280-49245299 | Msa1159600:CDS | 40.0% | |
| CAGATGATACTTACCTTCTC+AGG | - | chr7_4:49245350-49245369 | Msa1159600:CDS | 40.0% | |
| GAAGTTAGGTAATCCTGAGA+AGG | + | chr7_4:49245366-49245385 | None:intergenic | 40.0% | |
| CAATGGTTCTTAAGCCAAAG+AGG | + | chr7_4:49245401-49245420 | None:intergenic | 40.0% | |
| ! | CTCTTTGGCTTAAGAACCAT+TGG | - | chr7_4:49245399-49245418 | Msa1159600:CDS | 40.0% |
| !! | TTTTCAAGGGGTTTATCCCT+TGG | - | chr7_4:49245455-49245474 | Msa1159600:CDS | 40.0% |
| !! | CTTCTAAGGCATAAGAAGCA+AGG | + | chr7_4:49245486-49245505 | None:intergenic | 40.0% |
| AGCCAAACTCCGAATTATCA+GGG | + | chr7_4:49245546-49245565 | None:intergenic | 40.0% | |
| GGGATAACGAGTTTGAATCA+TGG | + | chr7_4:49245605-49245624 | None:intergenic | 40.0% | |
| GTTGTAGAGGAAGATTGAAG+AGG | + | chr7_4:49245850-49245869 | None:intergenic | 40.0% | |
| ! | TGTGGCTTATTGAGTTGTAG+AGG | + | chr7_4:49245863-49245882 | None:intergenic | 40.0% |
| GCCACAACAATAACGTTTCA+AGG | - | chr7_4:49245877-49245896 | Msa1159600:CDS | 40.0% | |
| ! | GTCTCCCACTTTCTAGTATA+GGG | + | chr7_4:49245966-49245985 | None:intergenic | 40.0% |
| ! | TGTCTCCCACTTTCTAGTAT+AGG | + | chr7_4:49245967-49245986 | None:intergenic | 40.0% |
| ACATCACAACCTTGAACACT+AGG | + | chr7_4:49246044-49246063 | None:intergenic | 40.0% | |
| GTGTATCACGAATTCAACGA+TGG | - | chr7_4:49246116-49246135 | Msa1159600:intron | 40.0% | |
| !! | GAATGGTGGATCACGAAATA+TGG | - | chr7_4:49246209-49246228 | Msa1159600:intron | 40.0% |
| AATTCATGATGAACTAGCCG+TGG | - | chr7_4:49246325-49246344 | Msa1159600:intron | 40.0% | |
| ! | GCGAATAAGCTTTGTCCAAA+AGG | + | chr7_4:49246397-49246416 | None:intergenic | 40.0% |
| AATTTCTTGCACTCCTTGTG+AGG | + | chr7_4:49246519-49246538 | None:intergenic | 40.0% | |
| TGCACGAACGAAACCAAAAT+TGG | - | chr7_4:49246538-49246557 | Msa1159600:intron | 40.0% | |
| TTTGCTAGTGAAAATGGCAG+AGG | - | chr7_4:49246604-49246623 | Msa1159600:intron | 40.0% | |
| GTGAAAATGGCAGAGGAAAT+TGG | - | chr7_4:49246611-49246630 | Msa1159600:intron | 40.0% | |
| !!! | GGCAGAGGAAATTGGTTTTA+AGG | - | chr7_4:49246619-49246638 | Msa1159600:CDS | 40.0% |
| ! | GACGTTATGATTGGTGTTCA+TGG | - | chr7_4:49246707-49246726 | Msa1159600:intron | 40.0% |
| TGGGCTGCAGATACTTATTA+CGG | - | chr7_4:49246803-49246822 | Msa1159600:intron | 40.0% | |
| CTTTCAGGGTCTCTCAAAAT+AGG | + | chr7_4:49246920-49246939 | None:intergenic | 40.0% | |
| ACCTTAGAAGGTTCAGGAAA+AGG | - | chr7_4:49247005-49247024 | Msa1159600:CDS | 40.0% | |
| ! | ACCTTTTCCTGAACCTTCTA+AGG | + | chr7_4:49247009-49247028 | None:intergenic | 40.0% |
| !!! | TGAGGTTTTGGAAGAAAGTG+AGG | + | chr7_4:49244729-49244748 | None:intergenic | 40.0% |
| AAACCCTTCACCTTCCAAAA+TGG | - | chr7_4:49244750-49244769 | Msa1159600:CDS | 40.0% | |
| !! | GAACCATTTTGGAAGGTGAA+GGG | + | chr7_4:49244756-49244775 | None:intergenic | 40.0% |
| !! | TGAACCATTTTGGAAGGTGA+AGG | + | chr7_4:49244757-49244776 | None:intergenic | 40.0% |
| !! | TGGTGATGAACCATTTTGGA+AGG | + | chr7_4:49244763-49244782 | None:intergenic | 40.0% |
| !! | TTCTAAGTTGATGGTAACGG+TGG | + | chr7_4:49244783-49244802 | None:intergenic | 40.0% |
| AACAAGAGAGAAAGGTGATG+AGG | + | chr7_4:49244912-49244931 | None:intergenic | 40.0% | |
| ! | TCTTGGTTGGCATCATTTTC+AGG | + | chr7_4:49245118-49245137 | None:intergenic | 40.0% |
| GAAAATGATGCCAACCAAGA+TGG | - | chr7_4:49245118-49245137 | Msa1159600:CDS | 40.0% | |
| TAGCAACCACATAAACCAAG+TGG | - | chr7_4:49245275-49245294 | Msa1159600:CDS | 40.0% | |
| AACCACATAAACCAAGTGGT+TGG | - | chr7_4:49245279-49245298 | Msa1159600:CDS | 40.0% | |
| ACCACATAAACCAAGTGGTT+GGG | - | chr7_4:49245280-49245299 | Msa1159600:CDS | 40.0% | |
| CAGATGATACTTACCTTCTC+AGG | - | chr7_4:49245350-49245369 | Msa1159600:CDS | 40.0% | |
| GAAGTTAGGTAATCCTGAGA+AGG | + | chr7_4:49245366-49245385 | None:intergenic | 40.0% | |
| CAATGGTTCTTAAGCCAAAG+AGG | + | chr7_4:49245401-49245420 | None:intergenic | 40.0% | |
| ! | CTCTTTGGCTTAAGAACCAT+TGG | - | chr7_4:49245399-49245418 | Msa1159600:CDS | 40.0% |
| !! | TTTTCAAGGGGTTTATCCCT+TGG | - | chr7_4:49245455-49245474 | Msa1159600:CDS | 40.0% |
| !! | CTTCTAAGGCATAAGAAGCA+AGG | + | chr7_4:49245486-49245505 | None:intergenic | 40.0% |
| AGCCAAACTCCGAATTATCA+GGG | + | chr7_4:49245546-49245565 | None:intergenic | 40.0% | |
| GGGATAACGAGTTTGAATCA+TGG | + | chr7_4:49245605-49245624 | None:intergenic | 40.0% | |
| GTTGTAGAGGAAGATTGAAG+AGG | + | chr7_4:49245850-49245869 | None:intergenic | 40.0% | |
| ! | TGTGGCTTATTGAGTTGTAG+AGG | + | chr7_4:49245863-49245882 | None:intergenic | 40.0% |
| GCCACAACAATAACGTTTCA+AGG | - | chr7_4:49245877-49245896 | Msa1159600:CDS | 40.0% | |
| ! | GTCTCCCACTTTCTAGTATA+GGG | + | chr7_4:49245966-49245985 | None:intergenic | 40.0% |
| ! | TGTCTCCCACTTTCTAGTAT+AGG | + | chr7_4:49245967-49245986 | None:intergenic | 40.0% |
| ACATCACAACCTTGAACACT+AGG | + | chr7_4:49246044-49246063 | None:intergenic | 40.0% | |
| GTGTATCACGAATTCAACGA+TGG | - | chr7_4:49246116-49246135 | Msa1159600:intron | 40.0% | |
| !! | GAATGGTGGATCACGAAATA+TGG | - | chr7_4:49246209-49246228 | Msa1159600:intron | 40.0% |
| AATTCATGATGAACTAGCCG+TGG | - | chr7_4:49246325-49246344 | Msa1159600:intron | 40.0% | |
| ! | GCGAATAAGCTTTGTCCAAA+AGG | + | chr7_4:49246397-49246416 | None:intergenic | 40.0% |
| AATTTCTTGCACTCCTTGTG+AGG | + | chr7_4:49246519-49246538 | None:intergenic | 40.0% | |
| TGCACGAACGAAACCAAAAT+TGG | - | chr7_4:49246538-49246557 | Msa1159600:intron | 40.0% | |
| TTTGCTAGTGAAAATGGCAG+AGG | - | chr7_4:49246604-49246623 | Msa1159600:intron | 40.0% | |
| GTGAAAATGGCAGAGGAAAT+TGG | - | chr7_4:49246611-49246630 | Msa1159600:intron | 40.0% | |
| !!! | GGCAGAGGAAATTGGTTTTA+AGG | - | chr7_4:49246619-49246638 | Msa1159600:CDS | 40.0% |
| ! | GACGTTATGATTGGTGTTCA+TGG | - | chr7_4:49246707-49246726 | Msa1159600:intron | 40.0% |
| TGGGCTGCAGATACTTATTA+CGG | - | chr7_4:49246803-49246822 | Msa1159600:intron | 40.0% | |
| CTTTCAGGGTCTCTCAAAAT+AGG | + | chr7_4:49246920-49246939 | None:intergenic | 40.0% | |
| ACCTTAGAAGGTTCAGGAAA+AGG | - | chr7_4:49247005-49247024 | Msa1159600:CDS | 40.0% | |
| ! | ACCTTTTCCTGAACCTTCTA+AGG | + | chr7_4:49247009-49247028 | None:intergenic | 40.0% |
| ! | GTGAAGGGTTTGTGAGGTTT+TGG | + | chr7_4:49244741-49244760 | None:intergenic | 45.0% |
| !! | ACGGTGGTGATGAACCATTT+TGG | + | chr7_4:49244767-49244786 | None:intergenic | 45.0% |
| TCCCAACCACTTGGTTTATG+TGG | + | chr7_4:49245284-49245303 | None:intergenic | 45.0% | |
| TGATTGTAGTCCCAACCACT+TGG | + | chr7_4:49245293-49245312 | None:intergenic | 45.0% | |
| GGTTGGGACTACAATCAGTT+AGG | - | chr7_4:49245296-49245315 | Msa1159600:CDS | 45.0% | |
| ! | GGCTCTAGTAATCCGAAGTT+AGG | + | chr7_4:49245380-49245399 | None:intergenic | 45.0% |
| TCGGATTACTAGAGCCTCTT+TGG | - | chr7_4:49245384-49245403 | Msa1159600:CDS | 45.0% | |
| GACCCTGATAATTCGGAGTT+TGG | - | chr7_4:49245541-49245560 | Msa1159600:CDS | 45.0% | |
| CAGCCAAACTCCGAATTATC+AGG | + | chr7_4:49245547-49245566 | None:intergenic | 45.0% | |
| AAAGTGGGAGACAAGTGTCA+TGG | - | chr7_4:49245974-49245993 | Msa1159600:CDS | 45.0% | |
| CCATTCGAGAAAAACACTGC+TGG | + | chr7_4:49246080-49246099 | None:intergenic | 45.0% | |
| ! | CCAGCAGTGTTTTTCTCGAA+TGG | - | chr7_4:49246077-49246096 | Msa1159600:intron | 45.0% |
| ! | GCAGTGTTTTTCTCGAATGG+AGG | - | chr7_4:49246080-49246099 | Msa1159600:intron | 45.0% |
| TGTTTCCCTGAAGCCATTGT+TGG | - | chr7_4:49246296-49246315 | Msa1159600:intron | 45.0% | |
| TGAGACCAACAATGGCTTCA+GGG | + | chr7_4:49246304-49246323 | None:intergenic | 45.0% | |
| TTGAGACCAACAATGGCTTC+AGG | + | chr7_4:49246305-49246324 | None:intergenic | 45.0% | |
| TTCCATCAATGCGGAATCCA+CGG | + | chr7_4:49246345-49246364 | None:intergenic | 45.0% | |
| TGGACAAAGCTTATTCGCCT+CGG | - | chr7_4:49246399-49246418 | Msa1159600:intron | 45.0% | |
| GCTTATTCGCCTCGGATAAA+AGG | - | chr7_4:49246407-49246426 | Msa1159600:intron | 45.0% | |
| GAGGTTTCTGATTCCGATGA+TGG | + | chr7_4:49246500-49246519 | None:intergenic | 45.0% | |
| TCGGAATCAGAAACCTCACA+AGG | - | chr7_4:49246503-49246522 | Msa1159600:intron | 45.0% | |
| TTCAAACCAAGCTTCCTTGC+AGG | + | chr7_4:49246833-49246852 | None:intergenic | 45.0% | |
| ! | GTGAAGGGTTTGTGAGGTTT+TGG | + | chr7_4:49244741-49244760 | None:intergenic | 45.0% |
| !! | ACGGTGGTGATGAACCATTT+TGG | + | chr7_4:49244767-49244786 | None:intergenic | 45.0% |
| TCCCAACCACTTGGTTTATG+TGG | + | chr7_4:49245284-49245303 | None:intergenic | 45.0% | |
| TGATTGTAGTCCCAACCACT+TGG | + | chr7_4:49245293-49245312 | None:intergenic | 45.0% | |
| GGTTGGGACTACAATCAGTT+AGG | - | chr7_4:49245296-49245315 | Msa1159600:CDS | 45.0% | |
| ! | GGCTCTAGTAATCCGAAGTT+AGG | + | chr7_4:49245380-49245399 | None:intergenic | 45.0% |
| TCGGATTACTAGAGCCTCTT+TGG | - | chr7_4:49245384-49245403 | Msa1159600:CDS | 45.0% | |
| GACCCTGATAATTCGGAGTT+TGG | - | chr7_4:49245541-49245560 | Msa1159600:CDS | 45.0% | |
| CAGCCAAACTCCGAATTATC+AGG | + | chr7_4:49245547-49245566 | None:intergenic | 45.0% | |
| AAAGTGGGAGACAAGTGTCA+TGG | - | chr7_4:49245974-49245993 | Msa1159600:CDS | 45.0% | |
| CCATTCGAGAAAAACACTGC+TGG | + | chr7_4:49246080-49246099 | None:intergenic | 45.0% | |
| ! | CCAGCAGTGTTTTTCTCGAA+TGG | - | chr7_4:49246077-49246096 | Msa1159600:intron | 45.0% |
| ! | GCAGTGTTTTTCTCGAATGG+AGG | - | chr7_4:49246080-49246099 | Msa1159600:intron | 45.0% |
| TGTTTCCCTGAAGCCATTGT+TGG | - | chr7_4:49246296-49246315 | Msa1159600:intron | 45.0% | |
| TGAGACCAACAATGGCTTCA+GGG | + | chr7_4:49246304-49246323 | None:intergenic | 45.0% | |
| TTGAGACCAACAATGGCTTC+AGG | + | chr7_4:49246305-49246324 | None:intergenic | 45.0% | |
| TTCCATCAATGCGGAATCCA+CGG | + | chr7_4:49246345-49246364 | None:intergenic | 45.0% | |
| TGGACAAAGCTTATTCGCCT+CGG | - | chr7_4:49246399-49246418 | Msa1159600:intron | 45.0% | |
| GCTTATTCGCCTCGGATAAA+AGG | - | chr7_4:49246407-49246426 | Msa1159600:intron | 45.0% | |
| GAGGTTTCTGATTCCGATGA+TGG | + | chr7_4:49246500-49246519 | None:intergenic | 45.0% | |
| TCGGAATCAGAAACCTCACA+AGG | - | chr7_4:49246503-49246522 | Msa1159600:intron | 45.0% | |
| TTCAAACCAAGCTTCCTTGC+AGG | + | chr7_4:49246833-49246852 | None:intergenic | 45.0% | |
| TGGAAGGTGAAGGGTTTGTG+AGG | + | chr7_4:49244747-49244766 | None:intergenic | 50.0% | |
| GCGAATTCGCCTAGTGTTCA+AGG | - | chr7_4:49246032-49246051 | Msa1159600:intron | 50.0% | |
| TTCTCGAATGGAGGCTACAC+TGG | - | chr7_4:49246089-49246108 | Msa1159600:intron | 50.0% | |
| ! | GTGGATTCCGCATTGATGGA+AGG | - | chr7_4:49246344-49246363 | Msa1159600:intron | 50.0% |
| ! | AGACGAGGAAAGAGAAGCAC+AGG | - | chr7_4:49246439-49246458 | Msa1159600:intron | 50.0% |
| GCAGCCCAATTAGTACCAAG+AGG | + | chr7_4:49246791-49246810 | None:intergenic | 50.0% | |
| CTTATTACGGCGAACCTGCA+AGG | - | chr7_4:49246816-49246835 | Msa1159600:CDS | 50.0% | |
| TGGAAGGTGAAGGGTTTGTG+AGG | + | chr7_4:49244747-49244766 | None:intergenic | 50.0% | |
| GCGAATTCGCCTAGTGTTCA+AGG | - | chr7_4:49246032-49246051 | Msa1159600:intron | 50.0% | |
| TTCTCGAATGGAGGCTACAC+TGG | - | chr7_4:49246089-49246108 | Msa1159600:intron | 50.0% | |
| ! | GTGGATTCCGCATTGATGGA+AGG | - | chr7_4:49246344-49246363 | Msa1159600:intron | 50.0% |
| ! | AGACGAGGAAAGAGAAGCAC+AGG | - | chr7_4:49246439-49246458 | Msa1159600:intron | 50.0% |
| GCAGCCCAATTAGTACCAAG+AGG | + | chr7_4:49246791-49246810 | None:intergenic | 50.0% | |
| CTTATTACGGCGAACCTGCA+AGG | - | chr7_4:49246816-49246835 | Msa1159600:CDS | 50.0% | |
| AGCCGTGGATTCCGCATTGA+TGG | - | chr7_4:49246340-49246359 | Msa1159600:intron | 55.0% | |
| AGCCGTGGATTCCGCATTGA+TGG | - | chr7_4:49246340-49246359 | Msa1159600:intron | 55.0% | |
| GGCGAACCTGCAAGGAAGCT+TGG | - | chr7_4:49246824-49246843 | Msa1159600:CDS | 60.0% | |
| GGCGAACCTGCAAGGAAGCT+TGG | - | chr7_4:49246824-49246843 | Msa1159600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49244705 | 49247093 | 49244705 | ID=Msa1159600;Name=Msa1159600 |
| chr7_4 | mRNA | 49244705 | 49247093 | 49244705 | ID=Msa1159600-mRNA-1;Parent=Msa1159600;Name=Msa1159600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=64|1|0.66|1|1|1|3|0|539 |
| chr7_4 | exon | 49244705 | 49246029 | 49244705 | ID=Msa1159600-mRNA-1:exon:13513;Parent=Msa1159600-mRNA-1 |
| chr7_4 | exon | 49246617 | 49246694 | 49246617 | ID=Msa1159600-mRNA-1:exon:13512;Parent=Msa1159600-mRNA-1 |
| chr7_4 | exon | 49246813 | 49247093 | 49246813 | ID=Msa1159600-mRNA-1:exon:13511;Parent=Msa1159600-mRNA-1 |
| chr7_4 | five_prime_UTR | 49247030 | 49247093 | 49247030 | ID=Msa1159600-mRNA-1:five_prime_utr;Parent=Msa1159600-mRNA-1 |
| chr7_4 | CDS | 49246813 | 49247029 | 49246813 | ID=Msa1159600-mRNA-1:cds;Parent=Msa1159600-mRNA-1 |
| chr7_4 | CDS | 49246617 | 49246694 | 49246617 | ID=Msa1159600-mRNA-1:cds;Parent=Msa1159600-mRNA-1 |
| chr7_4 | CDS | 49244705 | 49246029 | 49244705 | ID=Msa1159600-mRNA-1:cds;Parent=Msa1159600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
