Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160790 | XP_003624952.1 | 98.988 | 593 | 4 | 2 | 1 | 593 | 1 | 591 | 0.0 | 1187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160790 | sp|Q5SMQ9|PIN1A_ORYSJ | 67.700 | 613 | 160 | 9 | 1 | 593 | 1 | 595 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160790 | Q673E5 | 98.988 | 593 | 4 | 2 | 1 | 593 | 1 | 591 | 0.0 | 1187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0143670 | Msa1160790 | 0.803050 | 4.193571e-49 | -8.615850e-47 |
| Msa0176060 | Msa1160790 | 0.807632 | 4.596298e-50 | -8.615850e-47 |
| Msa1033430 | Msa1160790 | 0.826069 | 3.320654e-54 | -8.615850e-47 |
| Msa1073050 | Msa1160790 | 0.837882 | 3.997668e-57 | -8.615850e-47 |
| Msa1160790 | Msa1387500 | 0.813623 | 2.330716e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160790 | MtrunA17_Chr7g0255941 | 98.988 | 593 | 4 | 2 | 1 | 593 | 1 | 591 | 0.0 | 1187 |
| Msa1160790 | MtrunA17_Chr6g0478431 | 66.197 | 639 | 135 | 13 | 1 | 593 | 1 | 604 | 0.0 | 798 |
| Msa1160790 | MtrunA17_Chr4g0044181 | 60.908 | 683 | 153 | 11 | 1 | 593 | 1 | 659 | 0.0 | 757 |
| Msa1160790 | MtrunA17_Chr1g0160461 | 62.461 | 642 | 171 | 16 | 1 | 593 | 1 | 621 | 0.0 | 722 |
| Msa1160790 | MtrunA17_Chr4g0071571 | 61.076 | 632 | 200 | 10 | 1 | 593 | 1 | 625 | 0.0 | 717 |
| Msa1160790 | MtrunA17_Chr8g0393111 | 60.336 | 595 | 126 | 15 | 1 | 563 | 1 | 517 | 0.0 | 640 |
| Msa1160790 | MtrunA17_Chr1g0159341 | 52.246 | 601 | 205 | 16 | 1 | 593 | 1 | 527 | 8.40e-179 | 516 |
| Msa1160790 | MtrunA17_Chr2g0298971 | 37.624 | 606 | 255 | 16 | 1 | 572 | 1 | 517 | 4.33e-121 | 368 |
| Msa1160790 | MtrunA17_Chr4g0071551 | 74.648 | 213 | 53 | 1 | 1 | 212 | 1 | 213 | 1.46e-114 | 340 |
| Msa1160790 | MtrunA17_Chr4g0071561 | 44.324 | 370 | 122 | 8 | 230 | 569 | 1 | 316 | 1.64e-80 | 256 |
| Msa1160790 | MtrunA17_Chr6g0452821 | 55.729 | 192 | 76 | 3 | 405 | 593 | 175 | 360 | 3.78e-61 | 206 |
| Msa1160790 | MtrunA17_Chr6g0452821 | 59.494 | 158 | 63 | 1 | 1 | 157 | 1 | 158 | 6.73e-56 | 192 |
| Msa1160790 | MtrunA17_Chr7g0216571 | 62.658 | 158 | 59 | 0 | 436 | 593 | 210 | 367 | 4.18e-60 | 204 |
| Msa1160790 | MtrunA17_Chr7g0216571 | 57.595 | 158 | 67 | 0 | 1 | 158 | 12 | 169 | 1.24e-55 | 192 |
| Msa1160790 | MtrunA17_Chr7g0249141 | 49.438 | 178 | 85 | 1 | 414 | 591 | 187 | 359 | 2.84e-54 | 188 |
| Msa1160790 | MtrunA17_Chr7g0249141 | 46.193 | 197 | 94 | 2 | 1 | 194 | 1 | 188 | 1.30e-49 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160790 | AT1G73590.1 | 64.496 | 645 | 154 | 12 | 1 | 593 | 1 | 622 | 0.0 | 769 |
| Msa1160790 | AT1G70940.1 | 60.030 | 658 | 180 | 12 | 1 | 593 | 1 | 640 | 0.0 | 716 |
| Msa1160790 | AT2G01420.1 | 60.568 | 634 | 187 | 10 | 1 | 593 | 1 | 612 | 0.0 | 715 |
| Msa1160790 | AT1G23080.1 | 61.778 | 641 | 175 | 13 | 1 | 593 | 1 | 619 | 0.0 | 714 |
| Msa1160790 | AT1G23080.3 | 61.852 | 637 | 177 | 12 | 1 | 593 | 1 | 615 | 0.0 | 714 |
| Msa1160790 | AT1G23080.4 | 61.852 | 637 | 177 | 12 | 1 | 593 | 1 | 615 | 0.0 | 714 |
| Msa1160790 | AT2G01420.2 | 60.312 | 640 | 183 | 12 | 1 | 593 | 1 | 616 | 0.0 | 709 |
| Msa1160790 | AT5G57090.1 | 60.152 | 660 | 183 | 14 | 1 | 593 | 1 | 647 | 0.0 | 703 |
| Msa1160790 | AT1G23080.2 | 57.807 | 538 | 161 | 12 | 1 | 494 | 1 | 516 | 0.0 | 554 |
| Msa1160790 | AT5G57090.2 | 57.424 | 559 | 158 | 14 | 102 | 593 | 2 | 547 | 0.0 | 540 |
| Msa1160790 | AT2G01420.3 | 55.823 | 541 | 168 | 12 | 1 | 494 | 1 | 517 | 0.0 | 540 |
| Msa1160790 | AT1G77110.1 | 48.595 | 605 | 264 | 13 | 1 | 593 | 1 | 570 | 6.26e-179 | 518 |
| Msa1160790 | AT1G77110.2 | 48.027 | 583 | 256 | 13 | 1 | 571 | 1 | 548 | 4.56e-167 | 487 |
| Msa1160790 | AT5G15100.1 | 61.446 | 166 | 60 | 2 | 430 | 593 | 204 | 367 | 5.47e-59 | 201 |
| Msa1160790 | AT5G15100.1 | 51.515 | 165 | 75 | 2 | 1 | 160 | 1 | 165 | 1.10e-46 | 168 |
| Msa1160790 | AT5G16530.2 | 56.051 | 157 | 69 | 0 | 1 | 157 | 1 | 157 | 1.05e-54 | 189 |
| Msa1160790 | AT5G16530.2 | 49.635 | 137 | 69 | 0 | 436 | 572 | 192 | 328 | 1.00e-41 | 154 |
| Msa1160790 | AT5G16530.1 | 56.051 | 157 | 69 | 0 | 1 | 157 | 1 | 157 | 2.84e-54 | 188 |
| Msa1160790 | AT5G16530.1 | 50.980 | 153 | 75 | 0 | 436 | 588 | 192 | 344 | 1.73e-49 | 175 |
Find 156 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCTAACAATGTAGAAATT+TGG | 0.111534 | 7_4:-50882086 | Msa1160790:three_prime_UTR |
| AGAGGTGGTGGTGGTGATTA+TGG | 0.156726 | 7_4:-50883639 | Msa1160790:CDS |
| ATGGGCATTCCTTTGTTAAA+AGG | 0.199123 | 7_4:-50884353 | Msa1160790:CDS |
| ACCTGTGGCTAATAAGAAAA+AGG | 0.200889 | 7_4:-50883760 | Msa1160790:CDS |
| ACAATCTAACTTTGGAAGTT+TGG | 0.214287 | 7_4:-50883871 | Msa1160790:CDS |
| AATACTTACTCCAGCCTTAT+TGG | 0.215712 | 7_4:-50883043 | Msa1160790:CDS |
| CAATGTAGAAATTTGGGATT+TGG | 0.221288 | 7_4:-50882079 | Msa1160790:three_prime_UTR |
| TGATTCTGATGTTCTTTCTT+TGG | 0.227098 | 7_4:-50884168 | Msa1160790:CDS |
| TGTTTAGAATATGAAGAATT+TGG | 0.267914 | 7_4:-50883277 | Msa1160790:intron |
| ATCTAACAATGTAGAAATTT+GGG | 0.268446 | 7_4:-50882085 | Msa1160790:three_prime_UTR |
| AATCAGCTTTGTGCTCCTTT+TGG | 0.278332 | 7_4:+50881862 | None:intergenic |
| TCACCTTGAGATCCAGCTTT+AGG | 0.285606 | 7_4:+50883151 | None:intergenic |
| ACTTCCTAACACACTTGTTA+TGG | 0.291583 | 7_4:-50884372 | Msa1160790:CDS |
| AAGACTAATTTCAGTGGATT+AGG | 0.314876 | 7_4:-50882155 | Msa1160790:three_prime_UTR |
| TTTATTGCAGGGTTATATTT+GGG | 0.320539 | 7_4:-50882264 | Msa1160790:intron |
| TTGCCTATGGTTCAGTAAAA+TGG | 0.320764 | 7_4:-50884631 | Msa1160790:CDS |
| CAATCTAACTTTGGAAGTTT+GGG | 0.322747 | 7_4:-50883870 | Msa1160790:CDS |
| ATGGCGGTTCGCTTCCTTAC+CGG | 0.323278 | 7_4:-50882653 | Msa1160790:CDS |
| CATGGTGGTGGTGCTGGTGA+TGG | 0.331564 | 7_4:-50883735 | Msa1160790:CDS |
| CTTCCTAACACACTTGTTAT+GGG | 0.334368 | 7_4:-50884371 | Msa1160790:CDS |
| AATGGAGTAGCTCACCAAAA+AGG | 0.336344 | 7_4:-50883603 | Msa1160790:intron |
| TGTGTTTGTAGGGTTGTTCA+TGG | 0.338528 | 7_4:-50882726 | Msa1160790:intron |
| GAGGTGGTGGTGGTGATTAT+GGG | 0.338979 | 7_4:-50883638 | Msa1160790:CDS |
| AATGTAGAAATTTGGGATTT+GGG | 0.339092 | 7_4:-50882078 | Msa1160790:three_prime_UTR |
| TATGGGAATGATCAGCTTAA+TGG | 0.344641 | 7_4:-50883621 | Msa1160790:CDS |
| AAGATCTTCATATGTTTGTT+TGG | 0.346836 | 7_4:-50883707 | Msa1160790:CDS |
| TACCCTGCTCCTCATAGTGC+TGG | 0.347386 | 7_4:-50883792 | Msa1160790:CDS |
| CTTGGTCTCTAGTCTCATTC+AGG | 0.349978 | 7_4:-50883015 | Msa1160790:intron |
| CATCCTGACATTCTTAGCAC+TGG | 0.357420 | 7_4:-50882396 | Msa1160790:CDS |
| ATAAGGCTGGAGTAAGTATT+AGG | 0.364946 | 7_4:+50883046 | None:intergenic |
| TGATGATTCTGGTACCCTTA+TGG | 0.365955 | 7_4:-50884321 | Msa1160790:CDS |
| GTTAATGGAAATGGTGGAAA+TGG | 0.366985 | 7_4:-50883816 | Msa1160790:CDS |
| ATAATAGAACCAGCAGTATC+AGG | 0.369629 | 7_4:+50884203 | None:intergenic |
| AAGACAGGGATATGGTAAAA+AGG | 0.371696 | 7_4:+50884859 | None:intergenic |
| GGTGTTGGTAGTAAAGTTAA+TGG | 0.374233 | 7_4:-50883831 | Msa1160790:CDS |
| TGGTGTGGAGGAAATTGATT+AGG | 0.390012 | 7_4:-50883072 | Msa1160790:CDS |
| GTATGAATGCATGGTATATA+TGG | 0.390233 | 7_4:+50885004 | None:intergenic |
| GGTCATGATGAGTTTAGCTT+TGG | 0.397565 | 7_4:-50883256 | Msa1160790:CDS |
| AGAAGAAGAAGACAGGGATA+TGG | 0.398477 | 7_4:+50884851 | None:intergenic |
| GAACAACTATTTGAACCATA+AGG | 0.399773 | 7_4:+50884306 | None:intergenic |
| TTGTTCTTCAATGTATCATT+TGG | 0.400322 | 7_4:-50884289 | Msa1160790:CDS |
| CTTCATTTGTTGTAGGACTC+AGG | 0.401999 | 7_4:-50882610 | Msa1160790:CDS |
| CTAGCAGGTGGCATGTTTGT+TGG | 0.412896 | 7_4:+50883121 | None:intergenic |
| TGATGGAAGAAGAAGAAGAC+AGG | 0.413933 | 7_4:+50884844 | None:intergenic |
| ATGTAGTAAACTAATGTGAT+AGG | 0.418990 | 7_4:+50882226 | None:intergenic |
| ATATTATCTGATGCTGGACT+TGG | 0.419461 | 7_4:-50882868 | Msa1160790:CDS |
| TGGATTCCACCTTCAGAAAC+AGG | 0.420011 | 7_4:+50883669 | None:intergenic |
| ACCAAATGAAAAGGAGTGTT+AGG | 0.421071 | 7_4:+50884453 | None:intergenic |
| GATTGTTGGTTGAGATGAAA+TGG | 0.423710 | 7_4:+50884531 | None:intergenic |
| CACAAAAGGGACTATTCCTT+GGG | 0.427167 | 7_4:+50882440 | None:intergenic |
| CCTTTGTTAAAAGGAATGTA+TGG | 0.427200 | 7_4:-50884344 | Msa1160790:CDS |
| ATGCCCATAACAAGTGTGTT+AGG | 0.427285 | 7_4:+50884368 | None:intergenic |
| TGCTATGAACCTGTAGTTCA+TGG | 0.428807 | 7_4:+50884502 | None:intergenic |
| ACACAAAAGGGACTATTCCT+TGG | 0.429505 | 7_4:+50882439 | None:intergenic |
| GTTCATGGTGTAAGGATTGT+TGG | 0.430026 | 7_4:+50884517 | None:intergenic |
| TATTCCTTGGCAAACACAAA+AGG | 0.430791 | 7_4:+50882426 | None:intergenic |
| TTCACACCAGATCAATGTTC+AGG | 0.436198 | 7_4:-50884599 | Msa1160790:CDS |
| TCTGATGTTCTTTCTTTGGA+TGG | 0.440284 | 7_4:-50884164 | Msa1160790:CDS |
| TGAAGAAAAGAGGCAGGCAC+TGG | 0.442949 | 7_4:+50884806 | None:intergenic |
| GGAAATAGAACTGTTGCTAA+TGG | 0.443765 | 7_4:-50883235 | Msa1160790:CDS |
| TTCATTTGTTGTAGGACTCA+GGG | 0.446337 | 7_4:-50882609 | Msa1160790:CDS |
| AAGGGTCATGGTGGTGGTGC+TGG | 0.446753 | 7_4:-50883741 | Msa1160790:CDS |
| GGAATGTATGGTGATGATTC+TGG | 0.447363 | 7_4:-50884332 | Msa1160790:CDS |
| CCAGCCTTATTGGTCTCACT+TGG | 0.454253 | 7_4:-50883033 | Msa1160790:CDS |
| TTAGTCAAATTAGAAGGTCT+TGG | 0.455629 | 7_4:+50884005 | None:intergenic |
| AACTAGACCCTCTTGGTGTA+GGG | 0.459669 | 7_4:+50883949 | None:intergenic |
| ATCCCAGCACTATGAGGAGC+AGG | 0.463362 | 7_4:+50883789 | None:intergenic |
| CCTTACCGGTCCTGCTGTCA+TGG | 0.467833 | 7_4:-50882639 | Msa1160790:CDS |
| ATAGCTAGTTAGGTACTAGA+AGG | 0.469968 | 7_4:-50882034 | Msa1160790:three_prime_UTR |
| AACCCAGTGCTAAGAATGTC+AGG | 0.470683 | 7_4:+50882393 | None:intergenic |
| AGGATGAACATTGTATTCCT+TGG | 0.470964 | 7_4:+50882413 | None:intergenic |
| GAGACCAAGTGAGACCAATA+AGG | 0.472844 | 7_4:+50883029 | None:intergenic |
| TCAGCATTAGTCAAATTAGA+AGG | 0.474445 | 7_4:+50883999 | None:intergenic |
| GGTGGAATCCATGTCTTTAG+AGG | 0.474947 | 7_4:-50883657 | Msa1160790:CDS |
| GGTGGTGGTGCTGGTGATGG+TGG | 0.475013 | 7_4:-50883732 | Msa1160790:CDS |
| ATTGATTTAGCAACAATAGC+AGG | 0.475820 | 7_4:+50882895 | None:intergenic |
| CCAAGCAAAATATGCAAAAG+TGG | 0.478541 | 7_4:+50881961 | None:intergenic |
| GTTGCACATTGCCATTGTAC+AGG | 0.482101 | 7_4:-50882579 | Msa1160790:intron |
| TGTTCATGGCATTGCAGCCA+AGG | 0.483477 | 7_4:-50882712 | Msa1160790:CDS |
| TCCTACAACAAATGAAGAAA+AGG | 0.484743 | 7_4:+50882616 | None:intergenic |
| AACCTGTAGTTCATGGTGTA+AGG | 0.485438 | 7_4:+50884509 | None:intergenic |
| AGTTGAGCTTGAACCAAGCT+TGG | 0.485871 | 7_4:+50883186 | None:intergenic |
| GCAGGCACTGGGAGGTGAAA+GGG | 0.488163 | 7_4:+50884818 | None:intergenic |
| AAACTAGACCCTCTTGGTGT+AGG | 0.488328 | 7_4:+50883948 | None:intergenic |
| ATCCATGTCTTTAGAGGTGG+TGG | 0.489971 | 7_4:-50883651 | Msa1160790:CDS |
| AGTCCTAGACAATCTAACTT+TGG | 0.491310 | 7_4:-50883879 | Msa1160790:CDS |
| TGTTTGAATATAGGGGTGCT+AGG | 0.492266 | 7_4:-50884247 | Msa1160790:CDS |
| GGTAGTAAAGTTAATGGAAA+TGG | 0.493514 | 7_4:-50883825 | Msa1160790:CDS |
| AACAACTATTTGAACCATAA+GGG | 0.503075 | 7_4:+50884307 | None:intergenic |
| AGTGCTTCACCTGTTTCTGA+AGG | 0.503339 | 7_4:-50883678 | Msa1160790:CDS |
| CTTCAAACTGAAGCTGAAGT+TGG | 0.503605 | 7_4:-50884131 | Msa1160790:CDS |
| ACCCTGCTCCTCATAGTGCT+GGG | 0.503744 | 7_4:-50883791 | Msa1160790:CDS |
| ATCCTGACATTCTTAGCACT+GGG | 0.504317 | 7_4:-50882395 | Msa1160790:intron |
| ATTGCAATATTATCTGATGC+TGG | 0.506794 | 7_4:-50882874 | Msa1160790:CDS |
| GAACAGTTTCCTGATACTGC+TGG | 0.507669 | 7_4:-50884212 | Msa1160790:CDS |
| TTGTTCTTGACCAAATGAAA+AGG | 0.512300 | 7_4:+50884444 | None:intergenic |
| TTCTATGAAGTGAAGAAAAG+AGG | 0.513775 | 7_4:+50884796 | None:intergenic |
| ATCCTTACACCATGAACTAC+AGG | 0.514520 | 7_4:-50884511 | Msa1160790:CDS |
| TTTCCACAAGCAATAATCCT+TGG | 0.514930 | 7_4:+50882695 | None:intergenic |
| GAAGAAAAGGCCATGACAGC+AGG | 0.516677 | 7_4:+50882629 | None:intergenic |
| ATTCCTTGGCAAACACAAAA+GGG | 0.516904 | 7_4:+50882427 | None:intergenic |
| CTTCCAAAGTTAGATTGTCT+AGG | 0.518838 | 7_4:+50883876 | None:intergenic |
| CACCGTGGCTTCTTTCGCGA+TGG | 0.519566 | 7_4:-50882672 | Msa1160790:CDS |
| AGTAAAGTTAATGGAAATGG+TGG | 0.521354 | 7_4:-50883822 | Msa1160790:CDS |
| ACTGAGCTTCATCCTAAAGC+TGG | 0.521688 | 7_4:-50883163 | Msa1160790:CDS |
| GCTTCACCTGTTTCTGAAGG+TGG | 0.525317 | 7_4:-50883675 | Msa1160790:CDS |
| GGAATGGCTATGTTTAGCCT+TGG | 0.526270 | 7_4:-50882847 | Msa1160790:intron |
| AGCCTTGTCATAACACTAGC+AGG | 0.530702 | 7_4:+50883106 | None:intergenic |
| GTAGCAATGATCCTTGCCTA+TGG | 0.532720 | 7_4:-50884644 | Msa1160790:CDS |
| CATCCTAAAGCTGGATCTCA+AGG | 0.533916 | 7_4:-50883154 | Msa1160790:CDS |
| TTTGACGAGGAAAGTGGTGT+TGG | 0.534158 | 7_4:-50883846 | Msa1160790:CDS |
| CAGCCAAGGATTATTGCTTG+TGG | 0.537610 | 7_4:-50882698 | Msa1160790:CDS |
| GGCAGGCACTGGGAGGTGAA+AGG | 0.538051 | 7_4:+50884817 | None:intergenic |
| TTCTAGGCTGCTCTTCCCCA+AGG | 0.538712 | 7_4:-50882456 | Msa1160790:intron |
| TTTATGCCTGAACATTGATC+TGG | 0.540677 | 7_4:+50884593 | None:intergenic |
| CCATGACAGCAGGACCGGTA+AGG | 0.542644 | 7_4:+50882639 | None:intergenic |
| ACTTCAGCTTCAGTTTGAAG+TGG | 0.543240 | 7_4:+50884134 | None:intergenic |
| AGGGGTGCTAGGATTCTCAT+TGG | 0.546871 | 7_4:-50884236 | Msa1160790:CDS |
| CCAAGTGAGACCAATAAGGC+TGG | 0.548167 | 7_4:+50883033 | None:intergenic |
| GCTCAAGAGGGTCATTAGAA+TGG | 0.548285 | 7_4:-50884421 | Msa1160790:CDS |
| AAAGGCCATGACAGCAGGAC+CGG | 0.549483 | 7_4:+50882634 | None:intergenic |
| AGGTCTCATGGTGTTAACTC+TGG | 0.551683 | 7_4:-50884041 | Msa1160790:CDS |
| GAAGCTGAAGTTGGTGAAGA+TGG | 0.554767 | 7_4:-50884122 | Msa1160790:CDS |
| TGATTAAAACTAGACCCTCT+TGG | 0.555019 | 7_4:+50883942 | None:intergenic |
| CACCACCACCTCTAAAGACA+TGG | 0.558187 | 7_4:+50883649 | None:intergenic |
| GAAGAAAAGAGGCAGGCACT+GGG | 0.565033 | 7_4:+50884807 | None:intergenic |
| ATGAAGTGAAGAAAAGAGGC+AGG | 0.568440 | 7_4:+50884800 | None:intergenic |
| GAACCAAGCTTGGATAGCAC+TGG | 0.569514 | 7_4:+50883196 | None:intergenic |
| CGTGGCTTCTTTCGCGATGG+CGG | 0.570214 | 7_4:-50882669 | Msa1160790:CDS |
| ATTGGTTATAACCTGTACAA+TGG | 0.572648 | 7_4:+50882568 | None:intergenic |
| TGGTCAAGAACAAGCTCAAG+AGG | 0.574049 | 7_4:-50884434 | Msa1160790:CDS |
| GTACTACTGCAGTGAGGACA+TGG | 0.576345 | 7_4:+50884675 | None:intergenic |
| ATCTGATGCTGGACTTGGAA+TGG | 0.576488 | 7_4:-50882863 | Msa1160790:CDS |
| GGACCAGTGCTATCCAAGCT+TGG | 0.577529 | 7_4:-50883199 | Msa1160790:CDS |
| GATGGAAGAAGAAGAAGACA+GGG | 0.582554 | 7_4:+50884845 | None:intergenic |
| TCATTTGTTGTAGGACTCAG+GGG | 0.591968 | 7_4:-50882608 | Msa1160790:CDS |
| CCTATGGTTCAGTAAAATGG+TGG | 0.592418 | 7_4:-50884628 | Msa1160790:CDS |
| AGAATGAAGACTAATTTCAG+TGG | 0.594886 | 7_4:-50882161 | Msa1160790:three_prime_UTR |
| CGCCATCGCGAAAGAAGCCA+CGG | 0.602557 | 7_4:+50882670 | None:intergenic |
| CATGTCTTTAGAGGTGGTGG+TGG | 0.617538 | 7_4:-50883648 | Msa1160790:CDS |
| AGGATCATTGCTACATAGAG+TGG | 0.621554 | 7_4:+50884653 | None:intergenic |
| GCTAATGGTGTGGACAAAGA+AGG | 0.627258 | 7_4:-50883220 | Msa1160790:CDS |
| TAGAACTGTTGCTAATGGTG+TGG | 0.630238 | 7_4:-50883230 | Msa1160790:CDS |
| TGAATGCATGGTATATATGG+TGG | 0.632021 | 7_4:+50885007 | None:intergenic |
| CACCTGCTAGTGTTATGACA+AGG | 0.635227 | 7_4:-50883108 | Msa1160790:CDS |
| TCTAGAAACCCTACACCAAG+AGG | 0.643094 | 7_4:-50883957 | Msa1160790:CDS |
| GGAATCCATGTCTTTAGAGG+TGG | 0.645171 | 7_4:-50883654 | Msa1160790:CDS |
| ATGAAATGGAATGAGAGTAG+TGG | 0.649871 | 7_4:+50884545 | None:intergenic |
| TCCCAGCACTATGAGGAGCA+GGG | 0.661777 | 7_4:+50883790 | None:intergenic |
| GGTCAAGAACAAGCTCAAGA+GGG | 0.670875 | 7_4:-50884433 | Msa1160790:CDS |
| CTAGAAACCCTACACCAAGA+GGG | 0.673115 | 7_4:-50883956 | Msa1160790:CDS |
| GAAAAGAGGCAGGCACTGGG+AGG | 0.681889 | 7_4:+50884810 | None:intergenic |
| CTTGTCATAACACTAGCAGG+TGG | 0.717713 | 7_4:+50883109 | None:intergenic |
| TATTGCTTGTGGAAACACCG+TGG | 0.721408 | 7_4:-50882687 | Msa1160790:CDS |
| ACAAAAGGGACTATTCCTTG+GGG | 0.727306 | 7_4:+50882441 | None:intergenic |
| AGAGTGGTACTACTGCAGTG+AGG | 0.777701 | 7_4:+50884669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGTTTTAAATTTTCT+AGG | - | chr7_4:50884968-50884987 | Msa1160790:five_prime_UTR | 10.0% |
| !!! | ATATTTTTTCCTTTATTTGT+TGG | - | chr7_4:50883551-50883570 | Msa1160790:intron | 15.0% |
| !! | AATGGATAAAATAAAAGAAA+TGG | + | chr7_4:50884346-50884365 | None:intergenic | 15.0% |
| !!! | TTTTTAACATTAATGAATCT+AGG | + | chr7_4:50884540-50884559 | None:intergenic | 15.0% |
| !! | AGATTCATTAATGTTAAAAA+AGG | - | chr7_4:50884540-50884559 | Msa1160790:CDS | 15.0% |
| !!! | ATTTATTCTATTTTATTGCA+GGG | - | chr7_4:50884578-50884597 | Msa1160790:CDS | 15.0% |
| !!! | TTTGCAGTATCTTTTTTTTT+AGG | + | chr7_4:50881874-50881893 | None:intergenic | 20.0% |
| !! | CAATAAAAAAATAGAAAGCA+TGG | - | chr7_4:50881906-50881925 | Msa1160790:three_prime_UTR | 20.0% |
| !!! | TTTTTGAAGTTTTGAGTTAT+GGG | + | chr7_4:50882125-50882144 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAGTTTTGAGTTA+TGG | + | chr7_4:50882126-50882145 | None:intergenic | 20.0% |
| !!! | TGTTGTTTTTGTTTGAATAT+AGG | - | chr7_4:50882597-50882616 | Msa1160790:CDS | 20.0% |
| !!! | GTTGTTTTTGTTTGAATATA+GGG | - | chr7_4:50882598-50882617 | Msa1160790:CDS | 20.0% |
| !!! | TTGTTTTTGTTTGAATATAG+GGG | - | chr7_4:50882599-50882618 | Msa1160790:CDS | 20.0% |
| !!! | TCATACTGATTTTTATTCTA+TGG | - | chr7_4:50882931-50882950 | Msa1160790:intron | 20.0% |
| !!! | TTTTATTCTATGGTGAATAA+TGG | - | chr7_4:50882941-50882960 | Msa1160790:intron | 20.0% |
| !!! | TAATGTTTTTGGATTTTTAG+TGG | - | chr7_4:50883315-50883334 | Msa1160790:intron | 20.0% |
| !! | GAGACAAAAAATAACTTATT+AGG | + | chr7_4:50883390-50883409 | None:intergenic | 20.0% |
| !!! | TTTTACTCGTGTTTTTTAAT+TGG | - | chr7_4:50883521-50883540 | Msa1160790:intron | 20.0% |
| !!! | TGTTTAGAATATGAAGAATT+TGG | - | chr7_4:50883576-50883595 | Msa1160790:intron | 20.0% |
| !!! | TTTTTTTTGCTTCAATAGTT+TGG | - | chr7_4:50883888-50883907 | Msa1160790:CDS | 20.0% |
| !! | GATTTCAATAAAATATACCA+AGG | + | chr7_4:50884026-50884045 | None:intergenic | 20.0% |
| !!! | ATATCATTGTTATGATTTTG+TGG | - | chr7_4:50884096-50884115 | Msa1160790:CDS | 20.0% |
| !!! | AAACTTCTTGTTTTGTTTAT+TGG | + | chr7_4:50884306-50884325 | None:intergenic | 20.0% |
| !! | ACATACATTCAATAAATCAA+TGG | + | chr7_4:50884364-50884383 | None:intergenic | 20.0% |
| !!! | TTTAAAGTAGTAATCAATAG+AGG | + | chr7_4:50884498-50884517 | None:intergenic | 20.0% |
| !!! | GATTTATTCTATTTTATTGC+AGG | - | chr7_4:50884577-50884596 | Msa1160790:CDS | 20.0% |
| !!! | ATTAGTTTACTACATTTTGT+TGG | - | chr7_4:50884635-50884654 | Msa1160790:CDS | 20.0% |
| !!! | TTAGTTTACTACATTTTGTT+GGG | - | chr7_4:50884636-50884655 | Msa1160790:CDS | 20.0% |
| !! | TATCTAACAATGTAGAAATT+TGG | - | chr7_4:50884767-50884786 | Msa1160790:five_prime_UTR | 20.0% |
| !! | ATCTAACAATGTAGAAATTT+GGG | - | chr7_4:50884768-50884787 | Msa1160790:five_prime_UTR | 20.0% |
| !!! | TTTTTTTAGGTATGAATGCA+TGG | + | chr7_4:50881861-50881880 | None:intergenic | 25.0% |
| !!! | TTTTGAAGTTTTGAGTTATG+GGG | + | chr7_4:50882124-50882143 | None:intergenic | 25.0% |
| !!! | AAAGCACTTATCATTTTGTT+TGG | + | chr7_4:50882149-50882168 | None:intergenic | 25.0% |
| ! | AACAACTATTTGAACCATAA+GGG | + | chr7_4:50882549-50882568 | None:intergenic | 25.0% |
| ! | TTGTTCTTCAATGTATCATT+TGG | - | chr7_4:50882564-50882583 | Msa1160790:intron | 25.0% |
| ! | AAGATCTTCATATGTTTGTT+TGG | - | chr7_4:50883146-50883165 | Msa1160790:CDS | 25.0% |
| !! | GTCAAAAAACAAAACCTTTT+TGG | + | chr7_4:50883267-50883286 | None:intergenic | 25.0% |
| ! | AACATTAACCAAAAGTCAAA+GGG | + | chr7_4:50883302-50883321 | None:intergenic | 25.0% |
| ! | AAACATTAACCAAAAGTCAA+AGG | + | chr7_4:50883303-50883322 | None:intergenic | 25.0% |
| !!! | TGACTTTTGGTTAATGTTTT+TGG | - | chr7_4:50883304-50883323 | Msa1160790:intron | 25.0% |
| !!! | TTTTTGGATTTTTAGTGGTT+TGG | - | chr7_4:50883320-50883339 | Msa1160790:intron | 25.0% |
| !! | TGTCTCTACTATTAGTATTT+TGG | - | chr7_4:50883404-50883423 | Msa1160790:intron | 25.0% |
| ! | CTAAACAAACCAACAAATAA+AGG | + | chr7_4:50883563-50883582 | None:intergenic | 25.0% |
| !!! | AATATTTCCTATTGTTTTGC+AGG | - | chr7_4:50883920-50883939 | Msa1160790:CDS | 25.0% |
| ! | CAATAAGCTTATGGTTAAAT+TGG | + | chr7_4:50884048-50884067 | None:intergenic | 25.0% |
| ! | CATCAAAATCAATAAGCTTA+TGG | + | chr7_4:50884057-50884076 | None:intergenic | 25.0% |
| !!! | ATTGATTTTGATGTTTCCTA+TGG | - | chr7_4:50884064-50884083 | Msa1160790:CDS | 25.0% |
| ! | ATGATATAACCATAAACCAT+AGG | + | chr7_4:50884083-50884102 | None:intergenic | 25.0% |
| !! | TTTTATTGCAGGGTTATATT+TGG | - | chr7_4:50884588-50884607 | Msa1160790:CDS | 25.0% |
| ! | TTTATTGCAGGGTTATATTT+GGG | - | chr7_4:50884589-50884608 | Msa1160790:CDS | 25.0% |
| ! | ATGTAGTAAACTAATGTGAT+AGG | + | chr7_4:50884630-50884649 | None:intergenic | 25.0% |
| !!! | TACTCCATTTAGTGTTTTTT+TGG | - | chr7_4:50884739-50884758 | Msa1160790:five_prime_UTR | 25.0% |
| !!! | ACTCCATTTAGTGTTTTTTT+GGG | - | chr7_4:50884740-50884759 | Msa1160790:five_prime_UTR | 25.0% |
| !! | AATGTAGAAATTTGGGATTT+GGG | - | chr7_4:50884775-50884794 | Msa1160790:five_prime_UTR | 25.0% |
| ! | TAGAAGGAGAAAAAAAAAGT+TGG | - | chr7_4:50884835-50884854 | Msa1160790:five_prime_UTR | 25.0% |
| ! | GCTTGGATTAATGAAAAAAA+AGG | - | chr7_4:50884909-50884928 | Msa1160790:five_prime_UTR | 25.0% |
| ! | ATGAAAAAAAAGGAAAGTGA+AGG | - | chr7_4:50884919-50884938 | Msa1160790:five_prime_UTR | 25.0% |
| !! | TTTAAATTTTCTAGGCCAAA+AGG | - | chr7_4:50884976-50884995 | Msa1160790:five_prime_UTR | 25.0% |
| GTATGAATGCATGGTATATA+TGG | + | chr7_4:50881852-50881871 | None:intergenic | 30.0% | |
| TTCTATGAAGTGAAGAAAAG+AGG | + | chr7_4:50882060-50882079 | None:intergenic | 30.0% | |
| !!! | TTTGAAGTTTTGAGTTATGG+GGG | + | chr7_4:50882123-50882142 | None:intergenic | 30.0% |
| TTGTTCTTGACCAAATGAAA+AGG | + | chr7_4:50882412-50882431 | None:intergenic | 30.0% | |
| ! | CCATACATTCCTTTTAACAA+AGG | + | chr7_4:50882512-50882531 | None:intergenic | 30.0% |
| CCTTTGTTAAAAGGAATGTA+TGG | - | chr7_4:50882509-50882528 | Msa1160790:intron | 30.0% | |
| GAACAACTATTTGAACCATA+AGG | + | chr7_4:50882550-50882569 | None:intergenic | 30.0% | |
| TGATTCTGATGTTCTTTCTT+TGG | - | chr7_4:50882685-50882704 | Msa1160790:CDS | 30.0% | |
| !!! | GAAGTGAGATTTTTTCTAGA+AGG | - | chr7_4:50882792-50882811 | Msa1160790:intron | 30.0% |
| !!! | ATTTTTTCTAGAAGGTCTCA+TGG | - | chr7_4:50882800-50882819 | Msa1160790:intron | 30.0% |
| TTAGTCAAATTAGAAGGTCT+TGG | + | chr7_4:50882851-50882870 | None:intergenic | 30.0% | |
| TCAGCATTAGTCAAATTAGA+AGG | + | chr7_4:50882857-50882876 | None:intergenic | 30.0% | |
| ! | ACAATCTAACTTTGGAAGTT+TGG | - | chr7_4:50882982-50883001 | Msa1160790:intron | 30.0% |
| ! | CAATCTAACTTTGGAAGTTT+GGG | - | chr7_4:50882983-50883002 | Msa1160790:intron | 30.0% |
| GGTAGTAAAGTTAATGGAAA+TGG | - | chr7_4:50883028-50883047 | Msa1160790:CDS | 30.0% | |
| AGTAAAGTTAATGGAAATGG+TGG | - | chr7_4:50883031-50883050 | Msa1160790:CDS | 30.0% | |
| ACATTAACCAAAAGTCAAAG+GGG | + | chr7_4:50883301-50883320 | None:intergenic | 30.0% | |
| !! | TTTTGGTAGTTGAATTAGCA+TGG | - | chr7_4:50883421-50883440 | Msa1160790:intron | 30.0% |
| TGTATCCATCCATTAGTATT+TGG | - | chr7_4:50883472-50883491 | Msa1160790:intron | 30.0% | |
| AACAACCAAATACTAATGGA+TGG | + | chr7_4:50883480-50883499 | None:intergenic | 30.0% | |
| CAGAAACAACCAAATACTAA+TGG | + | chr7_4:50883484-50883503 | None:intergenic | 30.0% | |
| ! | ATTGATTTAGCAACAATAGC+AGG | + | chr7_4:50883961-50883980 | None:intergenic | 30.0% |
| ATTGCAATATTATCTGATGC+TGG | - | chr7_4:50883979-50883998 | Msa1160790:CDS | 30.0% | |
| TTGATGTTTCCTATGGTTTA+TGG | - | chr7_4:50884071-50884090 | Msa1160790:CDS | 30.0% | |
| TCCTACAACAAATGAAGAAA+AGG | + | chr7_4:50884240-50884259 | None:intergenic | 30.0% | |
| ATTGGTTATAACCTGTACAA+TGG | + | chr7_4:50884288-50884307 | None:intergenic | 30.0% | |
| ! | TGTGTGTTTTGTGTATTTCT+AGG | - | chr7_4:50884381-50884400 | Msa1160790:CDS | 30.0% |
| AGAATGAAGACTAATTTCAG+TGG | - | chr7_4:50884692-50884711 | Msa1160790:CDS | 30.0% | |
| ! | AAGACTAATTTCAGTGGATT+AGG | - | chr7_4:50884698-50884717 | Msa1160790:CDS | 30.0% |
| TAGCCCAAAAAAACACTAAA+TGG | + | chr7_4:50884746-50884765 | None:intergenic | 30.0% | |
| ! | CAATGTAGAAATTTGGGATT+TGG | - | chr7_4:50884774-50884793 | Msa1160790:five_prime_UTR | 30.0% |
| ! | TTGGGAAGACATGTAATTTT+AGG | - | chr7_4:50884793-50884812 | Msa1160790:five_prime_UTR | 30.0% |
| ! | TGGGAAGACATGTAATTTTA+GGG | - | chr7_4:50884794-50884813 | Msa1160790:five_prime_UTR | 30.0% |
| TGAATGCATGGTATATATGG+TGG | + | chr7_4:50881849-50881868 | None:intergenic | 35.0% | |
| AAGCATGGAAAAAGAAGAAG+AGG | - | chr7_4:50881921-50881940 | Msa1160790:three_prime_UTR | 35.0% | |
| AAGACAGGGATATGGTAAAA+AGG | + | chr7_4:50881997-50882016 | None:intergenic | 35.0% | |
| GAAGTGAGGGAAAAAAAGAA+AGG | + | chr7_4:50882091-50882110 | None:intergenic | 35.0% | |
| ! | ATTTTACTGAACCATAGGCA+AGG | + | chr7_4:50882223-50882242 | None:intergenic | 35.0% |
| TTGCCTATGGTTCAGTAAAA+TGG | - | chr7_4:50882222-50882241 | Msa1160790:CDS | 35.0% | |
| TTTATGCCTGAACATTGATC+TGG | + | chr7_4:50882263-50882282 | None:intergenic | 35.0% | |
| !! | CTGCAAAAAGTGCTACAAAA+CGG | + | chr7_4:50882286-50882305 | None:intergenic | 35.0% |
| ATGAAATGGAATGAGAGTAG+TGG | + | chr7_4:50882311-50882330 | None:intergenic | 35.0% | |
| ! | GATTGTTGGTTGAGATGAAA+TGG | + | chr7_4:50882325-50882344 | None:intergenic | 35.0% |
| ! | TCCTAACACTCCTTTTCATT+TGG | - | chr7_4:50882399-50882418 | Msa1160790:CDS | 35.0% |
| !! | ACCAAATGAAAAGGAGTGTT+AGG | + | chr7_4:50882403-50882422 | None:intergenic | 35.0% |
| ! | ACTTCCTAACACACTTGTTA+TGG | - | chr7_4:50882481-50882500 | Msa1160790:intron | 35.0% |
| !! | CTTCCTAACACACTTGTTAT+GGG | - | chr7_4:50882482-50882501 | Msa1160790:intron | 35.0% |
| ATGGGCATTCCTTTGTTAAA+AGG | - | chr7_4:50882500-50882519 | Msa1160790:intron | 35.0% | |
| ATAATAGAACCAGCAGTATC+AGG | + | chr7_4:50882653-50882672 | None:intergenic | 35.0% | |
| TCTGATGTTCTTTCTTTGGA+TGG | - | chr7_4:50882689-50882708 | Msa1160790:CDS | 35.0% | |
| TGATTAAAACTAGACCCTCT+TGG | + | chr7_4:50882914-50882933 | None:intergenic | 35.0% | |
| AGTCCTAGACAATCTAACTT+TGG | - | chr7_4:50882974-50882993 | Msa1160790:intron | 35.0% | |
| CTTCCAAAGTTAGATTGTCT+AGG | + | chr7_4:50882980-50882999 | None:intergenic | 35.0% | |
| !! | GGTGTTGGTAGTAAAGTTAA+TGG | - | chr7_4:50883022-50883041 | Msa1160790:CDS | 35.0% |
| ! | GTTAATGGAAATGGTGGAAA+TGG | - | chr7_4:50883037-50883056 | Msa1160790:CDS | 35.0% |
| ACCTGTGGCTAATAAGAAAA+AGG | - | chr7_4:50883093-50883112 | Msa1160790:CDS | 35.0% | |
| CCTGTGGCTAATAAGAAAAA+GGG | - | chr7_4:50883094-50883113 | Msa1160790:CDS | 35.0% | |
| GCTAATAAGAAAAAGGGTCA+TGG | - | chr7_4:50883100-50883119 | Msa1160790:CDS | 35.0% | |
| AATAAGAAAAAGGGTCATGG+TGG | - | chr7_4:50883103-50883122 | Msa1160790:CDS | 35.0% | |
| TATGGGAATGATCAGCTTAA+TGG | - | chr7_4:50883232-50883251 | Msa1160790:CDS | 35.0% | |
| !!! | TTGGATTTTTAGTGGTTTGG+TGG | - | chr7_4:50883323-50883342 | Msa1160790:intron | 35.0% |
| TTGAATTAGCATGGCTTAAG+TGG | - | chr7_4:50883430-50883449 | Msa1160790:intron | 35.0% | |
| TGAATTAGCATGGCTTAAGT+GGG | - | chr7_4:50883431-50883450 | Msa1160790:intron | 35.0% | |
| GGAAATAGAACTGTTGCTAA+TGG | - | chr7_4:50883618-50883637 | Msa1160790:CDS | 35.0% | |
| !!! | GACAAGGCTCATTTTGATTA+TGG | - | chr7_4:50883761-50883780 | Msa1160790:CDS | 35.0% |
| !!! | TCATTTTGATTATGGTGTGG+AGG | - | chr7_4:50883769-50883788 | Msa1160790:CDS | 35.0% |
| ATAAGGCTGGAGTAAGTATT+AGG | + | chr7_4:50883810-50883829 | None:intergenic | 35.0% | |
| ! | AATACTTACTCCAGCCTTAT+TGG | - | chr7_4:50883810-50883829 | Msa1160790:CDS | 35.0% |
| !! | ATTTCCTATTGTTTTGCAGG+TGG | - | chr7_4:50883923-50883942 | Msa1160790:CDS | 35.0% |
| ATATTATCTGATGCTGGACT+TGG | - | chr7_4:50883985-50884004 | Msa1160790:CDS | 35.0% | |
| TTTCCACAAGCAATAATCCT+TGG | + | chr7_4:50884161-50884180 | None:intergenic | 35.0% | |
| !!! | GCCTTTTCTTCATTTGTTGT+AGG | - | chr7_4:50884236-50884255 | Msa1160790:CDS | 35.0% |
| !! | TTCATTTGTTGTAGGACTCA+GGG | - | chr7_4:50884244-50884263 | Msa1160790:CDS | 35.0% |
| ATTCCTTGGCAAACACAAAA+GGG | + | chr7_4:50884429-50884448 | None:intergenic | 35.0% | |
| TATTCCTTGGCAAACACAAA+AGG | + | chr7_4:50884430-50884449 | None:intergenic | 35.0% | |
| AGGATGAACATTGTATTCCT+TGG | + | chr7_4:50884443-50884462 | None:intergenic | 35.0% | |
| CATTAATGAATCTAGGTGCT+AGG | + | chr7_4:50884533-50884552 | None:intergenic | 35.0% | |
| !!! | TTTTAGGGCAATAGCTAGTT+AGG | - | chr7_4:50884809-50884828 | Msa1160790:five_prime_UTR | 35.0% |
| ATAGCTAGTTAGGTACTAGA+AGG | - | chr7_4:50884819-50884838 | Msa1160790:five_prime_UTR | 35.0% | |
| GTGGAGTTCACAGTAAAAAA+AGG | + | chr7_4:50884876-50884895 | None:intergenic | 35.0% | |
| CCAAGCAAAATATGCAAAAG+TGG | + | chr7_4:50884895-50884914 | None:intergenic | 35.0% | |
| !! | CCACTTTTGCATATTTTGCT+TGG | - | chr7_4:50884892-50884911 | Msa1160790:five_prime_UTR | 35.0% |
| AGGGATATGGTAAAAAGGTG+AGG | + | chr7_4:50881992-50882011 | None:intergenic | 40.0% | |
| AGAAGAAGAAGACAGGGATA+TGG | + | chr7_4:50882005-50882024 | None:intergenic | 40.0% | |
| GATGGAAGAAGAAGAAGACA+GGG | + | chr7_4:50882011-50882030 | None:intergenic | 40.0% | |
| TGATGGAAGAAGAAGAAGAC+AGG | + | chr7_4:50882012-50882031 | None:intergenic | 40.0% | |
| ATGAAGTGAAGAAAAGAGGC+AGG | + | chr7_4:50882056-50882075 | None:intergenic | 40.0% | |
| AGGATCATTGCTACATAGAG+TGG | + | chr7_4:50882203-50882222 | None:intergenic | 40.0% | |
| ! | CCACCATTTTACTGAACCAT+AGG | + | chr7_4:50882228-50882247 | None:intergenic | 40.0% |
| CCTATGGTTCAGTAAAATGG+TGG | - | chr7_4:50882225-50882244 | Msa1160790:CDS | 40.0% | |
| TTCACACCAGATCAATGTTC+AGG | - | chr7_4:50882254-50882273 | Msa1160790:CDS | 40.0% | |
| GTTCATGGTGTAAGGATTGT+TGG | + | chr7_4:50882339-50882358 | None:intergenic | 40.0% | |
| ATCCTTACACCATGAACTAC+AGG | - | chr7_4:50882342-50882361 | Msa1160790:intron | 40.0% | |
| AACCTGTAGTTCATGGTGTA+AGG | + | chr7_4:50882347-50882366 | None:intergenic | 40.0% | |
| TGCTATGAACCTGTAGTTCA+TGG | + | chr7_4:50882354-50882373 | None:intergenic | 40.0% | |
| ATGCCCATAACAAGTGTGTT+AGG | + | chr7_4:50882488-50882507 | None:intergenic | 40.0% | |
| ! | GGAATGTATGGTGATGATTC+TGG | - | chr7_4:50882521-50882540 | Msa1160790:intron | 40.0% |
| TGATGATTCTGGTACCCTTA+TGG | - | chr7_4:50882532-50882551 | Msa1160790:intron | 40.0% | |
| !! | TGTTTGAATATAGGGGTGCT+AGG | - | chr7_4:50882606-50882625 | Msa1160790:CDS | 40.0% |
| ACTTCAGCTTCAGTTTGAAG+TGG | + | chr7_4:50882722-50882741 | None:intergenic | 40.0% | |
| CTTCAAACTGAAGCTGAAGT+TGG | - | chr7_4:50882722-50882741 | Msa1160790:intron | 40.0% | |
| GAAAAAATCCCAGCACTATG+AGG | + | chr7_4:50883073-50883092 | None:intergenic | 40.0% | |
| ! | CCCTTTTTCTTATTAGCCAC+AGG | + | chr7_4:50883097-50883116 | None:intergenic | 40.0% |
| AATGGAGTAGCTCACCAAAA+AGG | - | chr7_4:50883250-50883269 | Msa1160790:CDS | 40.0% | |
| !! | TGATTTGCCCCTTTGACTTT+TGG | - | chr7_4:50883291-50883310 | Msa1160790:intron | 40.0% |
| GAATTAGCATGGCTTAAGTG+GGG | - | chr7_4:50883432-50883451 | Msa1160790:intron | 40.0% | |
| ! | GGTCATGATGAGTTTAGCTT+TGG | - | chr7_4:50883597-50883616 | Msa1160790:intron | 40.0% |
| TAGAACTGTTGCTAATGGTG+TGG | - | chr7_4:50883623-50883642 | Msa1160790:CDS | 40.0% | |
| !!! | GGCTCATTTTGATTATGGTG+TGG | - | chr7_4:50883766-50883785 | Msa1160790:CDS | 40.0% |
| TGGTGTGGAGGAAATTGATT+AGG | - | chr7_4:50883781-50883800 | Msa1160790:CDS | 40.0% | |
| CATTCCACCTGCAAAACAAT+AGG | + | chr7_4:50883930-50883949 | None:intergenic | 40.0% | |
| TGGACTACTTGTGTGTTTGT+AGG | - | chr7_4:50884116-50884135 | Msa1160790:CDS | 40.0% | |
| GGACTACTTGTGTGTTTGTA+GGG | - | chr7_4:50884117-50884136 | Msa1160790:CDS | 40.0% | |
| TGTGTTTGTAGGGTTGTTCA+TGG | - | chr7_4:50884127-50884146 | Msa1160790:CDS | 40.0% | |
| !! | CTTCATTTGTTGTAGGACTC+AGG | - | chr7_4:50884243-50884262 | Msa1160790:CDS | 40.0% |
| !! | TCATTTGTTGTAGGACTCAG+GGG | - | chr7_4:50884245-50884264 | Msa1160790:CDS | 40.0% |
| ACAAAAGGGACTATTCCTTG+GGG | + | chr7_4:50884415-50884434 | None:intergenic | 40.0% | |
| CACAAAAGGGACTATTCCTT+GGG | + | chr7_4:50884416-50884435 | None:intergenic | 40.0% | |
| ACACAAAAGGGACTATTCCT+TGG | + | chr7_4:50884417-50884436 | None:intergenic | 40.0% | |
| ATCCTGACATTCTTAGCACT+GGG | - | chr7_4:50884458-50884477 | Msa1160790:CDS | 40.0% | |
| !! | AATCAGCTTTGTGCTCCTTT+TGG | + | chr7_4:50884994-50885013 | None:intergenic | 40.0% |
| !! | TGAGTTATGGGGGTGTGTTT+TGG | + | chr7_4:50882113-50882132 | None:intergenic | 45.0% |
| GTAGCAATGATCCTTGCCTA+TGG | - | chr7_4:50882209-50882228 | Msa1160790:exon | 45.0% | |
| TGGTCAAGAACAAGCTCAAG+AGG | - | chr7_4:50882419-50882438 | Msa1160790:CDS | 45.0% | |
| GGTCAAGAACAAGCTCAAGA+GGG | - | chr7_4:50882420-50882439 | Msa1160790:CDS | 45.0% | |
| GCTCAAGAGGGTCATTAGAA+TGG | - | chr7_4:50882432-50882451 | Msa1160790:CDS | 45.0% | |
| GAACAGTTTCCTGATACTGC+TGG | - | chr7_4:50882641-50882660 | Msa1160790:CDS | 45.0% | |
| !! | GAAGCTGAAGTTGGTGAAGA+TGG | - | chr7_4:50882731-50882750 | Msa1160790:intron | 45.0% |
| ! | AGGTCTCATGGTGTTAACTC+TGG | - | chr7_4:50882812-50882831 | Msa1160790:intron | 45.0% |
| TCTAGAAACCCTACACCAAG+AGG | - | chr7_4:50882896-50882915 | Msa1160790:CDS | 45.0% | |
| CTAGAAACCCTACACCAAGA+GGG | - | chr7_4:50882897-50882916 | Msa1160790:CDS | 45.0% | |
| ! | AACTAGACCCTCTTGGTGTA+GGG | + | chr7_4:50882907-50882926 | None:intergenic | 45.0% |
| ! | AAACTAGACCCTCTTGGTGT+AGG | + | chr7_4:50882908-50882927 | None:intergenic | 45.0% |
| !! | TGGAAGTTTGGGTTTTGACG+AGG | - | chr7_4:50882994-50883013 | Msa1160790:intron | 45.0% |
| !! | TTGGGTTTTGACGAGGAAAG+TGG | - | chr7_4:50883001-50883020 | Msa1160790:intron | 45.0% |
| TTTGACGAGGAAAGTGGTGT+TGG | - | chr7_4:50883007-50883026 | Msa1160790:intron | 45.0% | |
| !!! | TGCTGGGATTTTTTCACCTG+TGG | - | chr7_4:50883078-50883097 | Msa1160790:CDS | 45.0% |
| AAGAAAAAGGGTCATGGTGG+TGG | - | chr7_4:50883106-50883125 | Msa1160790:CDS | 45.0% | |
| !! | AGTGCTTCACCTGTTTCTGA+AGG | - | chr7_4:50883175-50883194 | Msa1160790:CDS | 45.0% |
| TGGATTCCACCTTCAGAAAC+AGG | + | chr7_4:50883187-50883206 | None:intergenic | 45.0% | |
| GGTGGAATCCATGTCTTTAG+AGG | - | chr7_4:50883196-50883215 | Msa1160790:CDS | 45.0% | |
| ! | GGAATCCATGTCTTTAGAGG+TGG | - | chr7_4:50883199-50883218 | Msa1160790:CDS | 45.0% |
| ! | ATCCATGTCTTTAGAGGTGG+TGG | - | chr7_4:50883202-50883221 | Msa1160790:CDS | 45.0% |
| GCTAATGGTGTGGACAAAGA+AGG | - | chr7_4:50883633-50883652 | Msa1160790:CDS | 45.0% | |
| AGTTGAGCTTGAACCAAGCT+TGG | + | chr7_4:50883670-50883689 | None:intergenic | 45.0% | |
| ACTGAGCTTCATCCTAAAGC+TGG | - | chr7_4:50883690-50883709 | Msa1160790:CDS | 45.0% | |
| CATCCTAAAGCTGGATCTCA+AGG | - | chr7_4:50883699-50883718 | Msa1160790:CDS | 45.0% | |
| TCACCTTGAGATCCAGCTTT+AGG | + | chr7_4:50883705-50883724 | None:intergenic | 45.0% | |
| CTTGTCATAACACTAGCAGG+TGG | + | chr7_4:50883747-50883766 | None:intergenic | 45.0% | |
| CACCTGCTAGTGTTATGACA+AGG | - | chr7_4:50883745-50883764 | Msa1160790:CDS | 45.0% | |
| ! | AGCCTTGTCATAACACTAGC+AGG | + | chr7_4:50883750-50883769 | None:intergenic | 45.0% |
| GAGACCAAGTGAGACCAATA+AGG | + | chr7_4:50883827-50883846 | None:intergenic | 45.0% | |
| CTTGGTCTCTAGTCTCATTC+AGG | - | chr7_4:50883838-50883857 | Msa1160790:CDS | 45.0% | |
| ATCTGATGCTGGACTTGGAA+TGG | - | chr7_4:50883990-50884009 | Msa1160790:CDS | 45.0% | |
| GGAATGGCTATGTTTAGCCT+TGG | - | chr7_4:50884006-50884025 | Msa1160790:CDS | 45.0% | |
| CAGCCAAGGATTATTGCTTG+TGG | - | chr7_4:50884155-50884174 | Msa1160790:CDS | 45.0% | |
| TATTGCTTGTGGAAACACCG+TGG | - | chr7_4:50884166-50884185 | Msa1160790:CDS | 45.0% | |
| GTTGCACATTGCCATTGTAC+AGG | - | chr7_4:50884274-50884293 | Msa1160790:CDS | 45.0% | |
| ! | AGTCCCTTTTGTGTTTGCCA+AGG | - | chr7_4:50884423-50884442 | Msa1160790:CDS | 45.0% |
| CATCCTGACATTCTTAGCAC+TGG | - | chr7_4:50884457-50884476 | Msa1160790:CDS | 45.0% | |
| AACCCAGTGCTAAGAATGTC+AGG | + | chr7_4:50884463-50884482 | None:intergenic | 45.0% | |
| !! | GGGAGGTGAAAGGGTTTTGA+TGG | + | chr7_4:50882029-50882048 | None:intergenic | 50.0% |
| GAAGAAAAGAGGCAGGCACT+GGG | + | chr7_4:50882049-50882068 | None:intergenic | 50.0% | |
| TGAAGAAAAGAGGCAGGCAC+TGG | + | chr7_4:50882050-50882069 | None:intergenic | 50.0% | |
| !!! | GGGGTGTGTTTTGGAAGTGA+GGG | + | chr7_4:50882104-50882123 | None:intergenic | 50.0% |
| GTACTACTGCAGTGAGGACA+TGG | + | chr7_4:50882181-50882200 | None:intergenic | 50.0% | |
| AGAGTGGTACTACTGCAGTG+AGG | + | chr7_4:50882187-50882206 | None:intergenic | 50.0% | |
| !! | AGGGGTGCTAGGATTCTCAT+TGG | - | chr7_4:50882617-50882636 | Msa1160790:CDS | 50.0% |
| !! | GCTTCACCTGTTTCTGAAGG+TGG | - | chr7_4:50883178-50883197 | Msa1160790:CDS | 50.0% |
| ! | CACCACCACCTCTAAAGACA+TGG | + | chr7_4:50883207-50883226 | None:intergenic | 50.0% |
| ! | CATGTCTTTAGAGGTGGTGG+TGG | - | chr7_4:50883205-50883224 | Msa1160790:CDS | 50.0% |
| !! | AGAGGTGGTGGTGGTGATTA+TGG | - | chr7_4:50883214-50883233 | Msa1160790:CDS | 50.0% |
| !! | GAGGTGGTGGTGGTGATTAT+GGG | - | chr7_4:50883215-50883234 | Msa1160790:CDS | 50.0% |
| GAACCAAGCTTGGATAGCAC+TGG | + | chr7_4:50883660-50883679 | None:intergenic | 50.0% | |
| CTAGCAGGTGGCATGTTTGT+TGG | + | chr7_4:50883735-50883754 | None:intergenic | 50.0% | |
| CCAAGTGAGACCAATAAGGC+TGG | + | chr7_4:50883823-50883842 | None:intergenic | 50.0% | |
| !! | CCAGCCTTATTGGTCTCACT+TGG | - | chr7_4:50883820-50883839 | Msa1160790:CDS | 50.0% |
| TGTTCATGGCATTGCAGCCA+AGG | - | chr7_4:50884141-50884160 | Msa1160790:CDS | 50.0% | |
| GAAGAAAAGGCCATGACAGC+AGG | + | chr7_4:50884227-50884246 | None:intergenic | 50.0% | |
| !!! | GGGGGTGTGTTTTGGAAGTG+AGG | + | chr7_4:50882105-50882124 | None:intergenic | 55.0% |
| TACCCTGCTCCTCATAGTGC+TGG | - | chr7_4:50883061-50883080 | Msa1160790:CDS | 55.0% | |
| ACCCTGCTCCTCATAGTGCT+GGG | - | chr7_4:50883062-50883081 | Msa1160790:CDS | 55.0% | |
| TCCCAGCACTATGAGGAGCA+GGG | + | chr7_4:50883066-50883085 | None:intergenic | 55.0% | |
| ATCCCAGCACTATGAGGAGC+AGG | + | chr7_4:50883067-50883086 | None:intergenic | 55.0% | |
| GGACCAGTGCTATCCAAGCT+TGG | - | chr7_4:50883654-50883673 | Msa1160790:CDS | 55.0% | |
| ATGGCGGTTCGCTTCCTTAC+CGG | - | chr7_4:50884200-50884219 | Msa1160790:CDS | 55.0% | |
| AAAGGCCATGACAGCAGGAC+CGG | + | chr7_4:50884222-50884241 | None:intergenic | 55.0% | |
| TTCTAGGCTGCTCTTCCCCA+AGG | - | chr7_4:50884397-50884416 | Msa1160790:CDS | 55.0% | |
| !! | GCAGGCACTGGGAGGTGAAA+GGG | + | chr7_4:50882038-50882057 | None:intergenic | 60.0% |
| !! | GAAAAGAGGCAGGCACTGGG+AGG | + | chr7_4:50882046-50882065 | None:intergenic | 60.0% |
| !! | AAGGGTCATGGTGGTGGTGC+TGG | - | chr7_4:50883112-50883131 | Msa1160790:CDS | 60.0% |
| !! | CATGGTGGTGGTGCTGGTGA+TGG | - | chr7_4:50883118-50883137 | Msa1160790:CDS | 60.0% |
| CACCGTGGCTTCTTTCGCGA+TGG | - | chr7_4:50884181-50884200 | Msa1160790:CDS | 60.0% | |
| CGCCATCGCGAAAGAAGCCA+CGG | + | chr7_4:50884186-50884205 | None:intergenic | 60.0% | |
| CGTGGCTTCTTTCGCGATGG+CGG | - | chr7_4:50884184-50884203 | Msa1160790:CDS | 60.0% | |
| CCATGACAGCAGGACCGGTA+AGG | + | chr7_4:50884217-50884236 | None:intergenic | 60.0% | |
| CCTTACCGGTCCTGCTGTCA+TGG | - | chr7_4:50884214-50884233 | Msa1160790:CDS | 60.0% | |
| !! | GGCAGGCACTGGGAGGTGAA+AGG | + | chr7_4:50882039-50882058 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGCTGGTGATGG+TGG | - | chr7_4:50883121-50883140 | Msa1160790:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 50881846 | 50885029 | 50881846 | ID=Msa1160790;Name=Msa1160790 |
| chr7_4 | mRNA | 50881846 | 50885029 | 50881846 | ID=Msa1160790-mRNA-1;Parent=Msa1160790;Name=Msa1160790-mRNA-1;_AED=0.07;_eAED=0.07;_QI=309|1|1|1|1|1|6|364|593 |
| chr7_4 | exon | 50881846 | 50882276 | 50881846 | ID=Msa1160790-mRNA-1:exon:14245;Parent=Msa1160790-mRNA-1 |
| chr7_4 | exon | 50882396 | 50882472 | 50882396 | ID=Msa1160790-mRNA-1:exon:14244;Parent=Msa1160790-mRNA-1 |
| chr7_4 | exon | 50882580 | 50882737 | 50882580 | ID=Msa1160790-mRNA-1:exon:14243;Parent=Msa1160790-mRNA-1 |
| chr7_4 | exon | 50882848 | 50882933 | 50882848 | ID=Msa1160790-mRNA-1:exon:14242;Parent=Msa1160790-mRNA-1 |
| chr7_4 | exon | 50883016 | 50883292 | 50883016 | ID=Msa1160790-mRNA-1:exon:14241;Parent=Msa1160790-mRNA-1 |
| chr7_4 | exon | 50883604 | 50885029 | 50883604 | ID=Msa1160790-mRNA-1:exon:14240;Parent=Msa1160790-mRNA-1 |
| chr7_4 | five_prime_UTR | 50884721 | 50885029 | 50884721 | ID=Msa1160790-mRNA-1:five_prime_utr;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50883604 | 50884720 | 50883604 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50883016 | 50883292 | 50883016 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50882848 | 50882933 | 50882848 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50882580 | 50882737 | 50882580 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50882396 | 50882472 | 50882396 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | CDS | 50882210 | 50882276 | 50882210 | ID=Msa1160790-mRNA-1:cds;Parent=Msa1160790-mRNA-1 |
| chr7_4 | three_prime_UTR | 50881846 | 50882209 | 50881846 | ID=Msa1160790-mRNA-1:three_prime_utr;Parent=Msa1160790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
