AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1033430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033430 MtrunA17_Chr7g0255941 99.323 591 4 0 1 591 1 591 0.0 1195
Msa1033430 MtrunA17_Chr6g0478431 66.248 637 136 13 1 591 1 604 0.0 798
Msa1033430 MtrunA17_Chr4g0044181 61.300 677 158 11 1 591 1 659 0.0 755
Msa1033430 MtrunA17_Chr1g0160461 63.396 642 163 16 1 591 1 621 0.0 720
Msa1033430 MtrunA17_Chr4g0071571 61.014 631 200 10 1 591 1 625 0.0 714
Msa1033430 MtrunA17_Chr8g0393111 60.134 597 122 15 1 561 1 517 0.0 639
Msa1033430 MtrunA17_Chr1g0159341 51.419 599 211 15 1 591 1 527 7.42e-179 516
Msa1033430 MtrunA17_Chr2g0298971 37.294 606 255 15 1 570 1 517 3.18e-119 363
Msa1033430 MtrunA17_Chr4g0071551 74.648 213 53 1 1 212 1 213 1.78e-114 340
Msa1033430 MtrunA17_Chr4g0071561 44.444 369 121 8 230 567 1 316 2.71e-80 255
Msa1033430 MtrunA17_Chr6g0452821 55.729 192 76 3 403 591 175 360 3.64e-61 206
Msa1033430 MtrunA17_Chr6g0452821 59.494 158 63 1 1 157 1 158 7.51e-56 192
Msa1033430 MtrunA17_Chr7g0216571 62.658 158 59 0 434 591 210 367 4.14e-60 204
Msa1033430 MtrunA17_Chr7g0216571 57.595 158 67 0 1 158 12 169 1.28e-55 192
Msa1033430 MtrunA17_Chr7g0249141 49.438 178 85 1 412 589 187 359 2.85e-54 188
Msa1033430 MtrunA17_Chr7g0249141 46.193 197 94 2 1 194 1 188 1.22e-49 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1033430 AT1G73590.1 65.070 647 145 14 1 591 1 622 0.0 768
Msa1033430 AT1G23080.1 62.264 636 178 12 1 591 1 619 0.0 714
Msa1033430 AT1G23080.3 62.342 632 180 11 1 591 1 615 0.0 714
Msa1033430 AT1G23080.4 62.342 632 180 11 1 591 1 615 0.0 714
Msa1033430 AT1G70940.1 60.031 653 186 10 1 591 1 640 0.0 713
Msa1033430 AT2G01420.1 60.190 633 189 9 1 591 1 612 0.0 710
Msa1033430 AT2G01420.2 59.876 643 179 12 1 591 1 616 0.0 705
Msa1033430 AT5G57090.1 60.000 660 182 15 1 591 1 647 0.0 696
Msa1033430 AT1G23080.2 58.349 533 164 11 1 492 1 516 0.0 555
Msa1033430 AT2G01420.3 55.331 544 164 12 1 492 1 517 0.0 535
Msa1033430 AT5G57090.2 56.708 559 160 15 102 591 2 547 0.0 532
Msa1033430 AT1G77110.1 48.675 604 263 11 1 591 1 570 3.21e-179 519
Msa1033430 AT1G77110.2 48.110 582 255 11 1 569 1 548 2.42e-167 488
Msa1033430 AT5G15100.1 61.446 166 60 2 428 591 204 367 6.09e-59 201
Msa1033430 AT5G15100.1 51.515 165 75 2 1 160 1 165 1.25e-46 168
Msa1033430 AT5G16530.2 56.051 157 69 0 1 157 1 157 1.26e-54 188
Msa1033430 AT5G16530.2 49.635 137 69 0 434 570 192 328 1.06e-41 154
Msa1033430 AT5G16530.1 56.051 157 69 0 1 157 1 157 2.71e-54 188
Msa1033430 AT5G16530.1 50.980 153 75 0 434 586 192 344 1.49e-49 176

Find 153 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTAACAATGTAGAAATT+TGG 0.111534 7_1:-68487895 Msa1033430:three_prime_UTR
AATACTTATTCCAGCCTTAT+TGG 0.181814 7_1:-68488827 Msa1033430:CDS
ATGGGCATTCCTTTGTTAAA+AGG 0.199123 7_1:-68490131 Msa1033430:CDS
ACAATCTAACTTTGGAAGTT+TGG 0.214287 7_1:-68489649 Msa1033430:CDS
CAATGTAGAAATTTGGGATT+TGG 0.221288 7_1:-68487888 Msa1033430:three_prime_UTR
ACCTGTGGCTAATAAGAAAA+AGG 0.222920 7_1:-68489541 Msa1033430:CDS
TGATTCTGATGTTCTTTCTT+TGG 0.227098 7_1:-68489946 Msa1033430:CDS
TATGGAAATGATCAACTTAA+TGG 0.262381 7_1:-68489405 Msa1033430:CDS
TGTTTAGAATATGAAGAATT+TGG 0.267914 7_1:-68489061 Msa1033430:intron
ATCTAACAATGTAGAAATTT+GGG 0.268446 7_1:-68487894 Msa1033430:three_prime_UTR
TTTAGAGGTGGTGGTGATTA+TGG 0.269987 7_1:-68489423 Msa1033430:CDS
AATCAGCTTTGTGCTCCTTT+TGG 0.278332 7_1:+68487665 None:intergenic
TCACCTTGAGATCCAGCTTT+AGG 0.285606 7_1:+68488935 None:intergenic
ACTTCCTAACACACTTGTTA+TGG 0.291583 7_1:-68490150 Msa1033430:CDS
CTTGGTCTCTGGTCTCATTC+AGG 0.296136 7_1:-68488799 Msa1033430:intron
AAGACTAATTTCAGTGGATT+AGG 0.314876 7_1:-68487964 Msa1033430:three_prime_UTR
TTTATTGCAGGGTTATATTT+GGG 0.320539 7_1:-68488073 Msa1033430:intron
TTGCCTATGGTTCAGTAAAA+TGG 0.320764 7_1:-68490409 Msa1033430:CDS
ATGGCGGTTCGCTTCCTTAC+CGG 0.322606 7_1:-68488450 Msa1033430:CDS
CAATCTAACTTTGGAAGTTT+GGG 0.322747 7_1:-68489648 Msa1033430:CDS
AGTGGTGTTGGTAAAGTTAA+TGG 0.322797 7_1:-68489612 Msa1033430:CDS
TGTGTTTGTAGGGTTGTTCA+TGG 0.325689 7_1:-68488523 Msa1033430:intron
CATGGTGGTGGTGCTGGTGA+TGG 0.331564 7_1:-68489516 Msa1033430:CDS
ATAAGGCTGGAATAAGTATT+AGG 0.334056 7_1:+68488830 None:intergenic
CTTCCTAACACACTTGTTAT+GGG 0.334368 7_1:-68490149 Msa1033430:CDS
AATGTAGAAATTTGGGATTT+GGG 0.339092 7_1:-68487887 Msa1033430:three_prime_UTR
ATTAGGAGGTGAAAGGGTTT+TGG 0.339562 7_1:+68490621 None:intergenic
AAGACCTTCATATGTTTGTT+TGG 0.346836 7_1:-68489488 Msa1033430:CDS
AATGGAGTAGCTCACCAAAA+AGG 0.349382 7_1:-68489387 Msa1033430:intron
AGGGGTGCTAGGATTCTTAT+TGG 0.354814 7_1:-68490014 Msa1033430:CDS
CATCCTGACATTCTTAGCAC+TGG 0.357420 7_1:-68488205 Msa1033430:CDS
TGATGATTCTGGTACCCTTA+TGG 0.365955 7_1:-68490099 Msa1033430:CDS
GTTAATGGAAATGGTGGAAA+TGG 0.366985 7_1:-68489597 Msa1033430:CDS
ATAATAGAACCAGCAGTATC+AGG 0.369629 7_1:+68489981 None:intergenic
TATTGGTCTCACTTGGTCTC+TGG 0.371342 7_1:-68488810 Msa1033430:CDS
AAGACAGGGATATGGTAAAA+AGG 0.371696 7_1:+68490666 None:intergenic
GTGTCTATATAGGGCCTGTT+TGG 0.386641 7_1:+68490806 None:intergenic
ATTCTATCTGATGCTGGCCT+TGG 0.395173 7_1:-68488656 Msa1033430:CDS
TGGTGTGGAGAAAATTGATT+AGG 0.395528 7_1:-68488856 Msa1033430:CDS
GGTCATGATGAGTTTAGCTT+TGG 0.397565 7_1:-68489040 Msa1033430:CDS
GAACAACTATTTGAACCATA+AGG 0.399773 7_1:+68490084 None:intergenic
TTGTTCTTCAATGTATCATT+TGG 0.400322 7_1:-68490067 Msa1033430:CDS
GATGGAAGAAGACAGGGATA+TGG 0.400541 7_1:+68490658 None:intergenic
CTTCATTTGTTGTAGGACTC+AGG 0.401999 7_1:-68488407 Msa1033430:CDS
CCTTACCGGCCCTGCTGTCA+TGG 0.408993 7_1:-68488436 Msa1033430:CDS
CCAGCCTTATTGGTCTCACT+TGG 0.410761 7_1:-68488817 Msa1033430:CDS
CTAGCAGGTGGCATGTTTGT+TGG 0.412896 7_1:+68488905 None:intergenic
ATGTAATAAACTAATGTGAT+AGG 0.418990 7_1:+68488035 None:intergenic
AGAGGCATTAGGAGGTGAAA+GGG 0.419993 7_1:+68490615 None:intergenic
TGGATTCCACCTTCAGAAAC+AGG 0.420011 7_1:+68489450 None:intergenic
ACCAAATGAAAAGGAGTGTT+AGG 0.421071 7_1:+68490231 None:intergenic
GATTGTTGGTTGAGATGAAA+TGG 0.423710 7_1:+68490309 None:intergenic
CACAAAAGGGACTATTCCTT+GGG 0.427167 7_1:+68488249 None:intergenic
CCTTTGTTAAAAGGAATGTA+TGG 0.427200 7_1:-68490122 Msa1033430:CDS
ATGCCCATAACAAGTGTGTT+AGG 0.427285 7_1:+68490146 None:intergenic
TACCCTGCTCCTCATAGTGC+AGG 0.428172 7_1:-68489573 Msa1033430:CDS
TGCTATGAACCTGTAGTTCA+TGG 0.428807 7_1:+68490280 None:intergenic
ACACAAAAGGGACTATTCCT+TGG 0.429505 7_1:+68488248 None:intergenic
GTTCATGGTGTAAGGATTGT+TGG 0.430026 7_1:+68490295 None:intergenic
TATTCCTTGGCAAACACAAA+AGG 0.430791 7_1:+68488235 None:intergenic
TTCACACCAGATCAATGTTC+AGG 0.436198 7_1:-68490377 Msa1033430:CDS
TCTGATGTTCTTTCTTTGGA+TGG 0.440284 7_1:-68489942 Msa1033430:CDS
GGAAATAGAACTGTTGCTAA+TGG 0.443765 7_1:-68489019 Msa1033430:CDS
TTCATTTGTTGTAGGACTCA+GGG 0.446337 7_1:-68488406 Msa1033430:CDS
AAGGGCCATGGTGGTGGTGC+TGG 0.446753 7_1:-68489522 Msa1033430:CDS
GGAATGTATGGTGATGATTC+TGG 0.447363 7_1:-68490110 Msa1033430:CDS
CCATGACAGCAGGGCCGGTA+AGG 0.448405 7_1:+68488436 None:intergenic
TTAGAAAATCAACTAGTTCA+AGG 0.451046 7_1:-68489860 Msa1033430:CDS
ATCCCTGCACTATGAGGAGC+AGG 0.452213 7_1:+68489570 None:intergenic
TTAGTCAAATTAGAAGGTCT+TGG 0.455629 7_1:+68489783 None:intergenic
AACTAGACCCTCTTGGTGTA+GGG 0.459669 7_1:+68489727 None:intergenic
GGGGTGTGTTGAAGGTTAAG+GGG 0.467461 7_1:+68490533 None:intergenic
ATAGCTAGTTAGGTACTAGA+AGG 0.469968 7_1:-68487843 Msa1033430:three_prime_UTR
AACCCAGTGCTAAGAATGTC+AGG 0.470683 7_1:+68488202 None:intergenic
AGGATGAACATTGTATTCCT+TGG 0.470964 7_1:+68488222 None:intergenic
GAGACCAAGTGAGACCAATA+AGG 0.471591 7_1:+68488813 None:intergenic
TCAGCATTAGTCAAATTAGA+AGG 0.474445 7_1:+68489777 None:intergenic
AAGAGGCATTAGGAGGTGAA+AGG 0.474814 7_1:+68490614 None:intergenic
GGTGGAATCCATGTCTTTAG+AGG 0.474947 7_1:-68489438 Msa1033430:CDS
GGTGGTGGTGCTGGTGATGG+TGG 0.475013 7_1:-68489513 Msa1033430:CDS
CCAAGCAAAATATGCAAAAG+TGG 0.478541 7_1:+68487767 None:intergenic
GTTGCACATTGCCATTGTAC+AGG 0.482101 7_1:-68488376 Msa1033430:intron
TGTTCATGGCATTGCAGCCA+AGG 0.483477 7_1:-68488509 Msa1033430:CDS
TCTCAGAAGCCAAACCAAAC+AGG 0.484310 7_1:-68490820 None:intergenic
AACCTGTAGTTCATGGTGTA+AGG 0.485438 7_1:+68490287 None:intergenic
AGTTGAGCTTGAACCAAGCT+TGG 0.485871 7_1:+68488970 None:intergenic
ATAGACTTGGCAACAATAGC+AGG 0.487288 7_1:+68488683 None:intergenic
AACTCCAAACAAACATATGA+AGG 0.487742 7_1:+68489484 None:intergenic
AAACTAGACCCTCTTGGTGT+AGG 0.488328 7_1:+68489726 None:intergenic
GTTGGTAAAGTTAATGGAAA+TGG 0.489863 7_1:-68489606 Msa1033430:CDS
AGTCCTAGACAATCTAACTT+TGG 0.491310 7_1:-68489657 Msa1033430:CDS
GGGTGTGTTGAAGGTTAAGG+GGG 0.492098 7_1:+68490534 None:intergenic
TGTTTGAATATAGGGGTGCT+AGG 0.492266 7_1:-68490025 Msa1033430:CDS
GGAATGGCTATGTTTAGCCT+TGG 0.492947 7_1:-68488635 Msa1033430:intron
TTTGACGAGGAAAGTGGTGT+TGG 0.498912 7_1:-68489624 Msa1033430:CDS
AACAACTATTTGAACCATAA+GGG 0.503075 7_1:+68490085 None:intergenic
AGTGCTTCACCTGTTTCTGA+AGG 0.503339 7_1:-68489459 Msa1033430:CDS
CTTCAAACTGAAGCTGAAGT+TGG 0.503605 7_1:-68489909 Msa1033430:CDS
ATCCTGACATTCTTAGCACT+GGG 0.504317 7_1:-68488204 Msa1033430:intron
CACCGTTGCTTCTTTCGCGA+TGG 0.505940 7_1:-68488469 Msa1033430:CDS
GAACAGTTTCCTGATACTGC+TGG 0.507669 7_1:-68489990 Msa1033430:CDS
ATCTGATGCTGGCCTTGGAA+TGG 0.509478 7_1:-68488651 Msa1033430:CDS
GAAGCTGAAGTTGGTGAAGA+TGG 0.512229 7_1:-68489900 Msa1033430:CDS
TTGTTCTTGACCAAATGAAA+AGG 0.512300 7_1:+68490222 None:intergenic
ATCCTTACACCATGAACTAC+AGG 0.514520 7_1:-68490289 Msa1033430:CDS
TTTCCACAAGCAATAATCCT+TGG 0.514930 7_1:+68488492 None:intergenic
ATTCCTTGGCAAACACAAAA+GGG 0.516904 7_1:+68488236 None:intergenic
CTTCCAAAGTTAGATTGTCT+AGG 0.518838 7_1:+68489654 None:intergenic
ACTGAGCTTCATCCTAAAGC+TGG 0.521688 7_1:-68488947 Msa1033430:CDS
ATCCATGTCTTTAGAGGTGG+TGG 0.525159 7_1:-68489432 Msa1033430:CDS
GCTTCACCTGTTTCTGAAGG+TGG 0.525317 7_1:-68489456 Msa1033430:CDS
GTAGCAATGATCCTTGCCTA+TGG 0.532720 7_1:-68490422 Msa1033430:CDS
CATCCTAAAGCTGGATCTCA+AGG 0.533916 7_1:-68488938 Msa1033430:CDS
AGTCTTGTCATAACACTAGC+AGG 0.534534 7_1:+68488890 None:intergenic
ATAGCAATTCTATCTGATGC+TGG 0.537081 7_1:-68488662 Msa1033430:CDS
CAGCCAAGGATTATTGCTTG+TGG 0.537610 7_1:-68488495 Msa1033430:CDS
TTCTAGGCTGCTCTTCCCCA+AGG 0.538712 7_1:-68488265 Msa1033430:intron
TTTATGCCTGAACATTGATC+TGG 0.540677 7_1:+68490371 None:intergenic
ACTTCAGCTTCAGTTTGAAG+TGG 0.543240 7_1:+68489912 None:intergenic
CACCACCACCTCTAAAGACA+TGG 0.544001 7_1:+68489430 None:intergenic
AAAAGCCATGACAGCAGGGC+CGG 0.548021 7_1:+68488431 None:intergenic
CCAAGTGAGACCAATAAGGC+TGG 0.548167 7_1:+68488817 None:intergenic
GCTCAAGAGGGTCATTAGAA+TGG 0.548285 7_1:-68490199 Msa1033430:CDS
TGATTAAAACTAGACCCTCT+TGG 0.555019 7_1:+68489720 None:intergenic
AGGTCTCATGGTGTTAACTC+AGG 0.561967 7_1:-68489819 Msa1033430:CDS
GAACCAAGCTTGGATAGCAC+TGG 0.569514 7_1:+68488980 None:intergenic
ATTGGTTATAACCTGTACAA+TGG 0.572648 7_1:+68488365 None:intergenic
TGGTCAAGAACAAGCTCAAG+AGG 0.574049 7_1:-68490212 Msa1033430:CDS
GTACTACTGCAGTGAGGACA+TGG 0.576345 7_1:+68490453 None:intergenic
GGACCAGTGCTATCCAAGCT+TGG 0.577529 7_1:-68488983 Msa1033430:CDS
CGTTGCTTCTTTCGCGATGG+CGG 0.581055 7_1:-68488466 Msa1033430:CDS
GGTAAAGTTAATGGAAATGG+TGG 0.582094 7_1:-68489603 Msa1033430:CDS
ACCCTGCTCCTCATAGTGCA+GGG 0.588265 7_1:-68489572 Msa1033430:CDS
GGGGTGTGTTTAGGAAGTGA+GGG 0.591124 7_1:+68490553 None:intergenic
TCATTTGTTGTAGGACTCAG+GGG 0.591968 7_1:-68488405 Msa1033430:CDS
GGCTAAACATAGCCATTCCA+AGG 0.592408 7_1:+68488639 None:intergenic
CCTATGGTTCAGTAAAATGG+TGG 0.592418 7_1:-68490406 Msa1033430:CDS
AGAATGAAGACTAATTTCAG+TGG 0.594886 7_1:-68487970 Msa1033430:three_prime_UTR
CGCCATCGCGAAAGAAGCAA+CGG 0.606578 7_1:+68488467 None:intergenic
AGATAGAATTGCTATAGACT+TGG 0.609236 7_1:+68488670 None:intergenic
AGGATCATTGCTACATAGAG+TGG 0.621554 7_1:+68490431 None:intergenic
GCTAATGGTGTGGACAAAGA+AGG 0.627258 7_1:-68489004 Msa1033430:CDS
TAGAACTGTTGCTAATGGTG+TGG 0.630238 7_1:-68489014 Msa1033430:CDS
TCTAGAAACCCTACACCAAG+AGG 0.643094 7_1:-68489735 Msa1033430:CDS
CATCACCAGCACCACCACCA+TGG 0.643711 7_1:+68489517 None:intergenic
GGAATCCATGTCTTTAGAGG+TGG 0.645171 7_1:-68489435 Msa1033430:CDS
ATGAAATGGAATGAGAGTAG+TGG 0.649871 7_1:+68490323 None:intergenic
GGTCAAGAACAAGCTCAAGA+GGG 0.670875 7_1:-68490211 Msa1033430:CDS
CTAGAAACCCTACACCAAGA+GGG 0.673115 7_1:-68489734 Msa1033430:CDS
TCCCTGCACTATGAGGAGCA+GGG 0.723942 7_1:+68489571 None:intergenic
ACAAAAGGGACTATTCCTTG+GGG 0.727306 7_1:+68488250 None:intergenic
CTTGTCATAACACTAGCAGG+TGG 0.727524 7_1:+68488893 None:intergenic
AGAGTGGTACTACTGCAGTG+AGG 0.777701 7_1:+68490447 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAATAAAATATACCA+AGG + chr7_1:68489841-68489860 None:intergenic 10.0%
!!! TATTTTGTTTTAAATTTTCT+AGG - chr7_1:68490768-68490787 Msa1033430:five_prime_UTR 10.0%
!!! TTAATGTTTTTGGATTTTTT+TGG - chr7_1:68489134-68489153 Msa1033430:intron 15.0%
!!! TTTTACTCATGTTTTTTAAT+TGG - chr7_1:68489340-68489359 Msa1033430:intron 15.0%
!!! ATATTTTTTCCTTTTTTTGT+TGG - chr7_1:68489370-68489389 Msa1033430:intron 15.0%
!!! TTTTTAACATTAATGAATCT+AGG + chr7_1:68490334-68490353 None:intergenic 15.0%
!! AGATTCATTAATGTTAAAAA+AGG - chr7_1:68490334-68490353 Msa1033430:CDS 15.0%
!!! ATTTATTCTATTTTATTGCA+GGG - chr7_1:68490372-68490391 Msa1033430:CDS 15.0%
!!! ATTAGTTTATTACATTTTGT+TGG - chr7_1:68490429-68490448 Msa1033430:CDS 15.0%
!!! TTAGTTTATTACATTTTGTT+GGG - chr7_1:68490430-68490449 Msa1033430:CDS 15.0%
!!! TGTTGTTTTTGTTTGAATAT+AGG - chr7_1:68488422-68488441 Msa1033430:CDS 20.0%
!!! GTTGTTTTTGTTTGAATATA+GGG - chr7_1:68488423-68488442 Msa1033430:CDS 20.0%
!!! TTGTTTTTGTTTGAATATAG+GGG - chr7_1:68488424-68488443 Msa1033430:CDS 20.0%
!!! TCATACTGATTTTTATTCTA+TGG - chr7_1:68488756-68488775 Msa1033430:intron 20.0%
!!! TTTTATTCTATGGTGAATAA+TGG - chr7_1:68488766-68488785 Msa1033430:intron 20.0%
!!! TGTTTAGAATATGAAGAATT+TGG - chr7_1:68489395-68489414 Msa1033430:CDS 20.0%
!! AATGTTATAAACATAACCAT+AGG + chr7_1:68489898-68489917 None:intergenic 20.0%
!! TGAAAAAAATAGTAAACTTC+TGG + chr7_1:68490125-68490144 None:intergenic 20.0%
!! ACATACATTCAATAAATCAA+TGG + chr7_1:68490158-68490177 None:intergenic 20.0%
!!! TTTAAAGTAGTAATCAATAG+AGG + chr7_1:68490292-68490311 None:intergenic 20.0%
!!! GATTTATTCTATTTTATTGC+AGG - chr7_1:68490371-68490390 Msa1033430:CDS 20.0%
!! ATGTAATAAACTAATGTGAT+AGG + chr7_1:68490424-68490443 None:intergenic 20.0%
!! TATCTAACAATGTAGAAATT+TGG - chr7_1:68490561-68490580 Msa1033430:five_prime_UTR 20.0%
!! ATCTAACAATGTAGAAATTT+GGG - chr7_1:68490562-68490581 Msa1033430:five_prime_UTR 20.0%
!! TGGATTATTAATGAAAAAAG+AGG - chr7_1:68490709-68490728 Msa1033430:five_prime_UTR 20.0%
!!! TTCTTTTAGGTGTCTATATA+GGG + chr7_1:68487662-68487681 None:intergenic 25.0%
!!! TTTCTTTTAGGTGTCTATAT+AGG + chr7_1:68487663-68487682 None:intergenic 25.0%
!! TTTACAGCATCTTTTCTTTT+AGG + chr7_1:68487675-68487694 None:intergenic 25.0%
!!! TTCTTGAAGTTTTGAGTTAT+GGG + chr7_1:68487947-68487966 None:intergenic 25.0%
!!! TTTCTTGAAGTTTTGAGTTA+TGG + chr7_1:68487948-68487967 None:intergenic 25.0%
!!! AAAGCACTTATCATTTTGTT+TGG + chr7_1:68487974-68487993 None:intergenic 25.0%
! AACAACTATTTGAACCATAA+GGG + chr7_1:68488374-68488393 None:intergenic 25.0%
! TTGTTCTTCAATGTATCATT+TGG - chr7_1:68488389-68488408 Msa1033430:CDS 25.0%
! TTAGAAAATCAACTAGTTCA+AGG - chr7_1:68488596-68488615 Msa1033430:intron 25.0%
! TATGGAAATGATCAACTTAA+TGG - chr7_1:68489051-68489070 Msa1033430:CDS 25.0%
!! GTCAAAAAACAAAACCTTTT+TGG + chr7_1:68489086-68489105 None:intergenic 25.0%
! ACATTAACCAAAAGTCAAAA+GGG + chr7_1:68489121-68489140 None:intergenic 25.0%
! AACATTAACCAAAAGTCAAA+AGG + chr7_1:68489122-68489141 None:intergenic 25.0%
!!! TGACTTTTGGTTAATGTTTT+TGG - chr7_1:68489124-68489143 Msa1033430:intron 25.0%
!!! GTTTTTGGATTTTTTTGGTT+TGG - chr7_1:68489139-68489158 Msa1033430:intron 25.0%
! GAGACAAAAAATAACTCATT+AGG + chr7_1:68489207-68489226 None:intergenic 25.0%
! AAACAACCAAATACTACTAA+TGG + chr7_1:68489300-68489319 None:intergenic 25.0%
! CTAAACAAACCAACAAAAAA+AGG + chr7_1:68489382-68489401 None:intergenic 25.0%
!!! AATCTTTCATATTGTTTTGC+AGG - chr7_1:68489735-68489754 Msa1033430:CDS 25.0%
! CATCAAAATCAATAAGCTTA+TGG + chr7_1:68489872-68489891 None:intergenic 25.0%
!!! ATTGATTTTGATGTTTCCTA+TGG - chr7_1:68489879-68489898 Msa1033430:CDS 25.0%
!!! AAACTTCTGGTTTTGTTTAT+TGG + chr7_1:68490112-68490131 None:intergenic 25.0%
!! TTTTATTGCAGGGTTATATT+TGG - chr7_1:68490382-68490401 Msa1033430:CDS 25.0%
! TTTATTGCAGGGTTATATTT+GGG - chr7_1:68490383-68490402 Msa1033430:CDS 25.0%
!!! TACTCCATTTAGTGTTTTTT+TGG - chr7_1:68490533-68490552 Msa1033430:five_prime_UTR 25.0%
!!! ACTCCATTTAGTGTTTTTTT+GGG - chr7_1:68490534-68490553 Msa1033430:five_prime_UTR 25.0%
!! AATGTAGAAATTTGGGATTT+GGG - chr7_1:68490569-68490588 Msa1033430:five_prime_UTR 25.0%
! AAGGAGAAAAAAAAAGAAGT+TGG - chr7_1:68490632-68490651 Msa1033430:five_prime_UTR 25.0%
!! TTTAAATTTTCTAGGCCAAA+AGG - chr7_1:68490776-68490795 Msa1033430:five_prime_UTR 25.0%
! AGAAAGCATGAAAAAAGAAG+AGG - chr7_1:68487719-68487738 Msa1033430:three_prime_UTR 30.0%
!!! TCTTGAAGTTTTGAGTTATG+GGG + chr7_1:68487946-68487965 None:intergenic 30.0%
TTGTTCTTGACCAAATGAAA+AGG + chr7_1:68488237-68488256 None:intergenic 30.0%
! CCATACATTCCTTTTAACAA+AGG + chr7_1:68488337-68488356 None:intergenic 30.0%
CCTTTGTTAAAAGGAATGTA+TGG - chr7_1:68488334-68488353 Msa1033430:intron 30.0%
GAACAACTATTTGAACCATA+AGG + chr7_1:68488375-68488394 None:intergenic 30.0%
TGATTCTGATGTTCTTTCTT+TGG - chr7_1:68488510-68488529 Msa1033430:CDS 30.0%
!!! ATTTTTTCTAGAAGGTCTCA+TGG - chr7_1:68488625-68488644 Msa1033430:intron 30.0%
TTAGTCAAATTAGAAGGTCT+TGG + chr7_1:68488676-68488695 None:intergenic 30.0%
TCAGCATTAGTCAAATTAGA+AGG + chr7_1:68488682-68488701 None:intergenic 30.0%
! ACAATCTAACTTTGGAAGTT+TGG - chr7_1:68488807-68488826 Msa1033430:CDS 30.0%
! CAATCTAACTTTGGAAGTTT+GGG - chr7_1:68488808-68488827 Msa1033430:CDS 30.0%
! GTTGGTAAAGTTAATGGAAA+TGG - chr7_1:68488850-68488869 Msa1033430:CDS 30.0%
AAGACCTTCATATGTTTGTT+TGG - chr7_1:68488968-68488987 Msa1033430:CDS 30.0%
AACTCCAAACAAACATATGA+AGG + chr7_1:68488975-68488994 None:intergenic 30.0%
CATTAACCAAAAGTCAAAAG+GGG + chr7_1:68489120-68489139 None:intergenic 30.0%
TTGTCTCTACTATTAGTACT+TGG - chr7_1:68489220-68489239 Msa1033430:intron 30.0%
ATCCATCCATTAGTAGTATT+TGG - chr7_1:68489291-68489310 Msa1033430:intron 30.0%
AACCAAATACTACTAATGGA+TGG + chr7_1:68489296-68489315 None:intergenic 30.0%
!!! GACAAGACTCATTTTGATTA+TGG - chr7_1:68489580-68489599 Msa1033430:CDS 30.0%
ATAAGGCTGGAATAAGTATT+AGG + chr7_1:68489629-68489648 None:intergenic 30.0%
! AATACTTATTCCAGCCTTAT+TGG - chr7_1:68489629-68489648 Msa1033430:CDS 30.0%
AGATAGAATTGCTATAGACT+TGG + chr7_1:68489789-68489808 None:intergenic 30.0%
!! TTGTTTTGTTGTGTGTTTGT+AGG - chr7_1:68489922-68489941 Msa1033430:CDS 30.0%
!! TGTTTTGTTGTGTGTTTGTA+GGG - chr7_1:68489923-68489942 Msa1033430:CDS 30.0%
!!! GCTTTTTCTTCATTTGTTGT+AGG - chr7_1:68490042-68490061 Msa1033430:CDS 30.0%
ATTGGTTATAACCTGTACAA+TGG + chr7_1:68490094-68490113 None:intergenic 30.0%
! TGTGTGTTTTGTGTATTTCT+AGG - chr7_1:68490175-68490194 Msa1033430:CDS 30.0%
AGAATGAAGACTAATTTCAG+TGG - chr7_1:68490486-68490505 Msa1033430:exon 30.0%
! AAGACTAATTTCAGTGGATT+AGG - chr7_1:68490492-68490511 Msa1033430:exon 30.0%
TAGCCCAAAAAAACACTAAA+TGG + chr7_1:68490540-68490559 None:intergenic 30.0%
! CAATGTAGAAATTTGGGATT+TGG - chr7_1:68490568-68490587 Msa1033430:five_prime_UTR 30.0%
! TTGGGAAGACATGTAATTTT+AGG - chr7_1:68490587-68490606 Msa1033430:intron 30.0%
! TGGGAAGACATGTAATTTTA+GGG - chr7_1:68490588-68490607 Msa1033430:intron 30.0%
ATGAAAAAAGAGGAAAGTGA+AGG - chr7_1:68490719-68490738 Msa1033430:five_prime_UTR 30.0%
AAGACAGGGATATGGTAAAA+AGG + chr7_1:68487793-68487812 None:intergenic 35.0%
!! GATTTTGATGGAAGAAGACA+GGG + chr7_1:68487807-68487826 None:intergenic 35.0%
!!! TTGGTTTTGTGGGATTTTGA+TGG + chr7_1:68487819-68487838 None:intergenic 35.0%
!!! TGAAAGGGTTTTGGTTTTGT+GGG + chr7_1:68487829-68487848 None:intergenic 35.0%
! TTCTATGAGTTGAAGAGAAG+AGG + chr7_1:68487862-68487881 None:intergenic 35.0%
!!! CTTGAAGTTTTGAGTTATGG+GGG + chr7_1:68487945-68487964 None:intergenic 35.0%
! ATTTTACTGAACCATAGGCA+AGG + chr7_1:68488048-68488067 None:intergenic 35.0%
TTGCCTATGGTTCAGTAAAA+TGG - chr7_1:68488047-68488066 Msa1033430:CDS 35.0%
TTTATGCCTGAACATTGATC+TGG + chr7_1:68488088-68488107 None:intergenic 35.0%
!! CTGCAAAAAGTGCTACAAAA+CGG + chr7_1:68488111-68488130 None:intergenic 35.0%
ATGAAATGGAATGAGAGTAG+TGG + chr7_1:68488136-68488155 None:intergenic 35.0%
! GATTGTTGGTTGAGATGAAA+TGG + chr7_1:68488150-68488169 None:intergenic 35.0%
! TCCTAACACTCCTTTTCATT+TGG - chr7_1:68488224-68488243 Msa1033430:CDS 35.0%
!! ACCAAATGAAAAGGAGTGTT+AGG + chr7_1:68488228-68488247 None:intergenic 35.0%
! ACTTCCTAACACACTTGTTA+TGG - chr7_1:68488306-68488325 Msa1033430:intron 35.0%
!! CTTCCTAACACACTTGTTAT+GGG - chr7_1:68488307-68488326 Msa1033430:intron 35.0%
ATGGGCATTCCTTTGTTAAA+AGG - chr7_1:68488325-68488344 Msa1033430:intron 35.0%
ATAATAGAACCAGCAGTATC+AGG + chr7_1:68488478-68488497 None:intergenic 35.0%
TCTGATGTTCTTTCTTTGGA+TGG - chr7_1:68488514-68488533 Msa1033430:CDS 35.0%
!!! GGAGTGAGATTTTTTCTAGA+AGG - chr7_1:68488617-68488636 Msa1033430:intron 35.0%
TGATTAAAACTAGACCCTCT+TGG + chr7_1:68488739-68488758 None:intergenic 35.0%
AGTCCTAGACAATCTAACTT+TGG - chr7_1:68488799-68488818 Msa1033430:intron 35.0%
CTTCCAAAGTTAGATTGTCT+AGG + chr7_1:68488805-68488824 None:intergenic 35.0%
!! AGTGGTGTTGGTAAAGTTAA+TGG - chr7_1:68488844-68488863 Msa1033430:CDS 35.0%
GGTAAAGTTAATGGAAATGG+TGG - chr7_1:68488853-68488872 Msa1033430:CDS 35.0%
! GTTAATGGAAATGGTGGAAA+TGG - chr7_1:68488859-68488878 Msa1033430:CDS 35.0%
ACCTGTGGCTAATAAGAAAA+AGG - chr7_1:68488915-68488934 Msa1033430:CDS 35.0%
CCTGTGGCTAATAAGAAAAA+GGG - chr7_1:68488916-68488935 Msa1033430:CDS 35.0%
! ACTTGGTAGTTGAATTAGCA+TGG - chr7_1:68489237-68489256 Msa1033430:intron 35.0%
TTGAATTAGCATGGCTTAAG+TGG - chr7_1:68489246-68489265 Msa1033430:intron 35.0%
TGAATTAGCATGGCTTAAGT+GGG - chr7_1:68489247-68489266 Msa1033430:intron 35.0%
GGAAATAGAACTGTTGCTAA+TGG - chr7_1:68489437-68489456 Msa1033430:CDS 35.0%
!!! GACTCATTTTGATTATGGTG+TGG - chr7_1:68489585-68489604 Msa1033430:CDS 35.0%
TGGTGTGGAGAAAATTGATT+AGG - chr7_1:68489600-68489619 Msa1033430:CDS 35.0%
!! CTTTCATATTGTTTTGCAGG+TGG - chr7_1:68489738-68489757 Msa1033430:CDS 35.0%
ATAGCAATTCTATCTGATGC+TGG - chr7_1:68489794-68489813 Msa1033430:CDS 35.0%
TTTCCACAAGCAATAATCCT+TGG + chr7_1:68489967-68489986 None:intergenic 35.0%
!! TTCATTTGTTGTAGGACTCA+GGG - chr7_1:68490050-68490069 Msa1033430:CDS 35.0%
ATTCCTTGGCAAACACAAAA+GGG + chr7_1:68490223-68490242 None:intergenic 35.0%
TATTCCTTGGCAAACACAAA+AGG + chr7_1:68490224-68490243 None:intergenic 35.0%
AGGATGAACATTGTATTCCT+TGG + chr7_1:68490237-68490256 None:intergenic 35.0%
CATTAATGAATCTAGGTGCT+AGG + chr7_1:68490327-68490346 None:intergenic 35.0%
!!! TTTTAGGGCAATAGCTAGTT+AGG - chr7_1:68490603-68490622 Msa1033430:intron 35.0%
ATAGCTAGTTAGGTACTAGA+AGG - chr7_1:68490613-68490632 Msa1033430:intron 35.0%
GTGGAGTTCACAGTAAAAAA+AGG + chr7_1:68490673-68490692 None:intergenic 35.0%
CCAAGCAAAATATGCAAAAG+TGG + chr7_1:68490692-68490711 None:intergenic 35.0%
!! CCACTTTTGCATATTTTGCT+TGG - chr7_1:68490689-68490708 Msa1033430:five_prime_UTR 35.0%
AGGGATATGGTAAAAAGGTG+AGG + chr7_1:68487788-68487807 None:intergenic 40.0%
!! GGATTTTGATGGAAGAAGAC+AGG + chr7_1:68487808-68487827 None:intergenic 40.0%
!!! GTGAAAGGGTTTTGGTTTTG+TGG + chr7_1:68487830-68487849 None:intergenic 40.0%
! ATTAGGAGGTGAAAGGGTTT+TGG + chr7_1:68487838-68487857 None:intergenic 40.0%
!! AGTTGAAGAGAAGAGGCATT+AGG + chr7_1:68487855-68487874 None:intergenic 40.0%
GAAGTGAGGGAAAAAGAGAA+AGG + chr7_1:68487893-68487912 None:intergenic 40.0%
AGGATCATTGCTACATAGAG+TGG + chr7_1:68488028-68488047 None:intergenic 40.0%
! CCACCATTTTACTGAACCAT+AGG + chr7_1:68488053-68488072 None:intergenic 40.0%
CCTATGGTTCAGTAAAATGG+TGG - chr7_1:68488050-68488069 Msa1033430:CDS 40.0%
TTCACACCAGATCAATGTTC+AGG - chr7_1:68488079-68488098 Msa1033430:intron 40.0%
GTTCATGGTGTAAGGATTGT+TGG + chr7_1:68488164-68488183 None:intergenic 40.0%
ATCCTTACACCATGAACTAC+AGG - chr7_1:68488167-68488186 Msa1033430:intron 40.0%
AACCTGTAGTTCATGGTGTA+AGG + chr7_1:68488172-68488191 None:intergenic 40.0%
TGCTATGAACCTGTAGTTCA+TGG + chr7_1:68488179-68488198 None:intergenic 40.0%
ATGCCCATAACAAGTGTGTT+AGG + chr7_1:68488313-68488332 None:intergenic 40.0%
! GGAATGTATGGTGATGATTC+TGG - chr7_1:68488346-68488365 Msa1033430:intron 40.0%
TGATGATTCTGGTACCCTTA+TGG - chr7_1:68488357-68488376 Msa1033430:intron 40.0%
!! TGTTTGAATATAGGGGTGCT+AGG - chr7_1:68488431-68488450 Msa1033430:CDS 40.0%
ACTTCAGCTTCAGTTTGAAG+TGG + chr7_1:68488547-68488566 None:intergenic 40.0%
CTTCAAACTGAAGCTGAAGT+TGG - chr7_1:68488547-68488566 Msa1033430:intron 40.0%
GAAAAAATCCCTGCACTATG+AGG + chr7_1:68488895-68488914 None:intergenic 40.0%
! CCCTTTTTCTTATTAGCCAC+AGG + chr7_1:68488919-68488938 None:intergenic 40.0%
GCTAATAAGAAAAAGGGCCA+TGG - chr7_1:68488922-68488941 Msa1033430:CDS 40.0%
AATAAGAAAAAGGGCCATGG+TGG - chr7_1:68488925-68488944 Msa1033430:CDS 40.0%
! TTTAGAGGTGGTGGTGATTA+TGG - chr7_1:68489033-68489052 Msa1033430:CDS 40.0%
AATGGAGTAGCTCACCAAAA+AGG - chr7_1:68489069-68489088 Msa1033430:intron 40.0%
!!! GATTTGCCCCTTTTGACTTT+TGG - chr7_1:68489111-68489130 Msa1033430:intron 40.0%
GAATTAGCATGGCTTAAGTG+GGG - chr7_1:68489248-68489267 Msa1033430:intron 40.0%
! GGTCATGATGAGTTTAGCTT+TGG - chr7_1:68489416-68489435 Msa1033430:CDS 40.0%
TAGAACTGTTGCTAATGGTG+TGG - chr7_1:68489442-68489461 Msa1033430:CDS 40.0%
! AGTCTTGTCATAACACTAGC+AGG + chr7_1:68489569-68489588 None:intergenic 40.0%
ATAGACTTGGCAACAATAGC+AGG + chr7_1:68489776-68489795 None:intergenic 40.0%
TGTGTTTGTAGGGTTGTTCA+TGG - chr7_1:68489933-68489952 Msa1033430:CDS 40.0%
AAGAAAAAGCCATGACAGCA+GGG + chr7_1:68490032-68490051 None:intergenic 40.0%
!! CTTCATTTGTTGTAGGACTC+AGG - chr7_1:68490049-68490068 Msa1033430:CDS 40.0%
!! TCATTTGTTGTAGGACTCAG+GGG - chr7_1:68490051-68490070 Msa1033430:CDS 40.0%
ACAAAAGGGACTATTCCTTG+GGG + chr7_1:68490209-68490228 None:intergenic 40.0%
CACAAAAGGGACTATTCCTT+GGG + chr7_1:68490210-68490229 None:intergenic 40.0%
ACACAAAAGGGACTATTCCT+TGG + chr7_1:68490211-68490230 None:intergenic 40.0%
ATCCTGACATTCTTAGCACT+GGG - chr7_1:68490252-68490271 Msa1033430:CDS 40.0%
!! AATCAGCTTTGTGCTCCTTT+TGG + chr7_1:68490794-68490813 None:intergenic 40.0%
GTGTCTATATAGGGCCTGTT+TGG + chr7_1:68487653-68487672 None:intergenic 45.0%
GATGGAAGAAGACAGGGATA+TGG + chr7_1:68487801-68487820 None:intergenic 45.0%
!! AGAGGCATTAGGAGGTGAAA+GGG + chr7_1:68487844-68487863 None:intergenic 45.0%
!! AAGAGGCATTAGGAGGTGAA+AGG + chr7_1:68487845-68487864 None:intergenic 45.0%
!! TGAAGAGAAGAGGCATTAGG+AGG + chr7_1:68487852-68487871 None:intergenic 45.0%
! AAGGTTAAGGGGGTGTGTTT+AGG + chr7_1:68487915-68487934 None:intergenic 45.0%
GTAGCAATGATCCTTGCCTA+TGG - chr7_1:68488034-68488053 Msa1033430:CDS 45.0%
TGGTCAAGAACAAGCTCAAG+AGG - chr7_1:68488244-68488263 Msa1033430:CDS 45.0%
GGTCAAGAACAAGCTCAAGA+GGG - chr7_1:68488245-68488264 Msa1033430:CDS 45.0%
GCTCAAGAGGGTCATTAGAA+TGG - chr7_1:68488257-68488276 Msa1033430:CDS 45.0%
!! AGGGGTGCTAGGATTCTTAT+TGG - chr7_1:68488442-68488461 Msa1033430:CDS 45.0%
GAACAGTTTCCTGATACTGC+TGG - chr7_1:68488466-68488485 Msa1033430:CDS 45.0%
!! GAAGCTGAAGTTGGTGAAGA+TGG - chr7_1:68488556-68488575 Msa1033430:intron 45.0%
! AGGTCTCATGGTGTTAACTC+AGG - chr7_1:68488637-68488656 Msa1033430:CDS 45.0%
TCTAGAAACCCTACACCAAG+AGG - chr7_1:68488721-68488740 Msa1033430:intron 45.0%
CTAGAAACCCTACACCAAGA+GGG - chr7_1:68488722-68488741 Msa1033430:intron 45.0%
! AACTAGACCCTCTTGGTGTA+GGG + chr7_1:68488732-68488751 None:intergenic 45.0%
! AAACTAGACCCTCTTGGTGT+AGG + chr7_1:68488733-68488752 None:intergenic 45.0%
!! TGGAAGTTTGGGTTTTGACG+AGG - chr7_1:68488819-68488838 Msa1033430:CDS 45.0%
!! TTGGGTTTTGACGAGGAAAG+TGG - chr7_1:68488826-68488845 Msa1033430:CDS 45.0%
TTTGACGAGGAAAGTGGTGT+TGG - chr7_1:68488832-68488851 Msa1033430:CDS 45.0%
!!! TGCAGGGATTTTTTCACCTG+TGG - chr7_1:68488900-68488919 Msa1033430:CDS 45.0%
!! AGTGCTTCACCTGTTTCTGA+AGG - chr7_1:68488997-68489016 Msa1033430:CDS 45.0%
TGGATTCCACCTTCAGAAAC+AGG + chr7_1:68489009-68489028 None:intergenic 45.0%
GGTGGAATCCATGTCTTTAG+AGG - chr7_1:68489018-68489037 Msa1033430:CDS 45.0%
! GGAATCCATGTCTTTAGAGG+TGG - chr7_1:68489021-68489040 Msa1033430:CDS 45.0%
! ATCCATGTCTTTAGAGGTGG+TGG - chr7_1:68489024-68489043 Msa1033430:CDS 45.0%
GCTAATGGTGTGGACAAAGA+AGG - chr7_1:68489452-68489471 Msa1033430:CDS 45.0%
AGTTGAGCTTGAACCAAGCT+TGG + chr7_1:68489489-68489508 None:intergenic 45.0%
ACTGAGCTTCATCCTAAAGC+TGG - chr7_1:68489509-68489528 Msa1033430:CDS 45.0%
CATCCTAAAGCTGGATCTCA+AGG - chr7_1:68489518-68489537 Msa1033430:CDS 45.0%
TCACCTTGAGATCCAGCTTT+AGG + chr7_1:68489524-68489543 None:intergenic 45.0%
CTTGTCATAACACTAGCAGG+TGG + chr7_1:68489566-68489585 None:intergenic 45.0%
GAGACCAAGTGAGACCAATA+AGG + chr7_1:68489646-68489665 None:intergenic 45.0%
! TATTGGTCTCACTTGGTCTC+TGG - chr7_1:68489646-68489665 Msa1033430:CDS 45.0%
! ATTCTATCTGATGCTGGCCT+TGG - chr7_1:68489800-68489819 Msa1033430:CDS 45.0%
GGCTAAACATAGCCATTCCA+AGG + chr7_1:68489820-68489839 None:intergenic 45.0%
GGAATGGCTATGTTTAGCCT+TGG - chr7_1:68489821-68489840 Msa1033430:CDS 45.0%
CAGCCAAGGATTATTGCTTG+TGG - chr7_1:68489961-68489980 Msa1033430:CDS 45.0%
GAAGAAAAAGCCATGACAGC+AGG + chr7_1:68490033-68490052 None:intergenic 45.0%
GTTGCACATTGCCATTGTAC+AGG - chr7_1:68490080-68490099 Msa1033430:CDS 45.0%
! AGTCCCTTTTGTGTTTGCCA+AGG - chr7_1:68490217-68490236 Msa1033430:CDS 45.0%
CATCCTGACATTCTTAGCAC+TGG - chr7_1:68490251-68490270 Msa1033430:CDS 45.0%
AACCCAGTGCTAAGAATGTC+AGG + chr7_1:68490257-68490276 None:intergenic 45.0%
GGGGTGTGTTTAGGAAGTGA+GGG + chr7_1:68487906-68487925 None:intergenic 50.0%
GGGTGTGTTGAAGGTTAAGG+GGG + chr7_1:68487925-68487944 None:intergenic 50.0%
GGGGTGTGTTGAAGGTTAAG+GGG + chr7_1:68487926-68487945 None:intergenic 50.0%
! GGGGGTGTGTTGAAGGTTAA+GGG + chr7_1:68487927-68487946 None:intergenic 50.0%
! TGGGGGTGTGTTGAAGGTTA+AGG + chr7_1:68487928-68487947 None:intergenic 50.0%
! GAGTTATGGGGGTGTGTTGA+AGG + chr7_1:68487934-68487953 None:intergenic 50.0%
GTACTACTGCAGTGAGGACA+TGG + chr7_1:68488006-68488025 None:intergenic 50.0%
AGAGTGGTACTACTGCAGTG+AGG + chr7_1:68488012-68488031 None:intergenic 50.0%
AAGAAAAAGGGCCATGGTGG+TGG - chr7_1:68488928-68488947 Msa1033430:CDS 50.0%
!! GCTTCACCTGTTTCTGAAGG+TGG - chr7_1:68489000-68489019 Msa1033430:CDS 50.0%
! CACCACCACCTCTAAAGACA+TGG + chr7_1:68489029-68489048 None:intergenic 50.0%
GAACCAAGCTTGGATAGCAC+TGG + chr7_1:68489479-68489498 None:intergenic 50.0%
CTAGCAGGTGGCATGTTTGT+TGG + chr7_1:68489554-68489573 None:intergenic 50.0%
CCAAGTGAGACCAATAAGGC+TGG + chr7_1:68489642-68489661 None:intergenic 50.0%
!! CCAGCCTTATTGGTCTCACT+TGG - chr7_1:68489639-68489658 Msa1033430:CDS 50.0%
CTTGGTCTCTGGTCTCATTC+AGG - chr7_1:68489657-68489676 Msa1033430:CDS 50.0%
!! ATCTGATGCTGGCCTTGGAA+TGG - chr7_1:68489805-68489824 Msa1033430:CDS 50.0%
TGTTCATGGCATTGCAGCCA+AGG - chr7_1:68489947-68489966 Msa1033430:CDS 50.0%
! GGGGGTGTGTTTAGGAAGTG+AGG + chr7_1:68487907-68487926 None:intergenic 55.0%
TACCCTGCTCCTCATAGTGC+AGG - chr7_1:68488883-68488902 Msa1033430:CDS 55.0%
ACCCTGCTCCTCATAGTGCA+GGG - chr7_1:68488884-68488903 Msa1033430:CDS 55.0%
TCCCTGCACTATGAGGAGCA+GGG + chr7_1:68488888-68488907 None:intergenic 55.0%
ATCCCTGCACTATGAGGAGC+AGG + chr7_1:68488889-68488908 None:intergenic 55.0%
GGACCAGTGCTATCCAAGCT+TGG - chr7_1:68489473-68489492 Msa1033430:CDS 55.0%
CACCGTTGCTTCTTTCGCGA+TGG - chr7_1:68489987-68490006 Msa1033430:CDS 55.0%
CGCCATCGCGAAAGAAGCAA+CGG + chr7_1:68489992-68490011 None:intergenic 55.0%
CGTTGCTTCTTTCGCGATGG+CGG - chr7_1:68489990-68490009 Msa1033430:CDS 55.0%
ATGGCGGTTCGCTTCCTTAC+CGG - chr7_1:68490006-68490025 Msa1033430:CDS 55.0%
AAAAGCCATGACAGCAGGGC+CGG + chr7_1:68490028-68490047 None:intergenic 55.0%
TTCTAGGCTGCTCTTCCCCA+AGG - chr7_1:68490191-68490210 Msa1033430:CDS 55.0%
CATCACCAGCACCACCACCA+TGG + chr7_1:68488942-68488961 None:intergenic 60.0%
!! CATGGTGGTGGTGCTGGTGA+TGG - chr7_1:68488940-68488959 Msa1033430:CDS 60.0%
!! AAGGGCCATGGTGGTGGTGC+TGG - chr7_1:68488934-68488953 Msa1033430:CDS 65.0%
!! GGTGGTGGTGCTGGTGATGG+TGG - chr7_1:68488943-68488962 Msa1033430:CDS 65.0%
CCATGACAGCAGGGCCGGTA+AGG + chr7_1:68490023-68490042 None:intergenic 65.0%
CCTTACCGGCCCTGCTGTCA+TGG - chr7_1:68490020-68490039 Msa1033430:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 68487649 68490829 68487649 ID=Msa1033430;Name=Msa1033430
chr7_1 mRNA 68487649 68490829 68487649 ID=Msa1033430-mRNA-1;Parent=Msa1033430;Name=Msa1033430-mRNA-1;_AED=0.07;_eAED=0.07;_QI=311|1|1|1|0.83|0.71|7|370|591
chr7_1 exon 68487649 68488085 68487649 ID=Msa1033430-mRNA-1:exon:16030;Parent=Msa1033430-mRNA-1
chr7_1 exon 68488205 68488281 68488205 ID=Msa1033430-mRNA-1:exon:16029;Parent=Msa1033430-mRNA-1
chr7_1 exon 68488377 68488534 68488377 ID=Msa1033430-mRNA-1:exon:16028;Parent=Msa1033430-mRNA-1
chr7_1 exon 68488636 68488721 68488636 ID=Msa1033430-mRNA-1:exon:16027;Parent=Msa1033430-mRNA-1
chr7_1 exon 68488800 68489076 68488800 ID=Msa1033430-mRNA-1:exon:16026;Parent=Msa1033430-mRNA-1
chr7_1 exon 68489388 68490605 68489388 ID=Msa1033430-mRNA-1:exon:16025;Parent=Msa1033430-mRNA-1
chr7_1 exon 68490626 68490829 68490626 ID=Msa1033430-mRNA-1:exon:16024;Parent=Msa1033430-mRNA-1
chr7_1 five_prime_UTR 68490626 68490829 68490626 ID=Msa1033430-mRNA-1:five_prime_utr;Parent=Msa1033430-mRNA-1
chr7_1 five_prime_UTR 68490499 68490605 68490499 ID=Msa1033430-mRNA-1:five_prime_utr;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68489388 68490498 68489388 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68488800 68489076 68488800 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68488636 68488721 68488636 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68488377 68488534 68488377 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68488205 68488281 68488205 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 CDS 68488019 68488085 68488019 ID=Msa1033430-mRNA-1:cds;Parent=Msa1033430-mRNA-1
chr7_1 three_prime_UTR 68487649 68488018 68487649 ID=Msa1033430-mRNA-1:three_prime_utr;Parent=Msa1033430-mRNA-1
Gene Sequence

>Msa1033430

ATGATAAGTGCTTTAGACTTATACCATGTCCTCACTGCAGTAGTACCACTCTATGTAGCAATGATCCTTGCCTATGGTTCAGTAAAATGGTGGAAAATCTTCACACCAGATCAATGTTCAGGCATAAACCGTTTTGTAGCACTTTTTGCAGTTCCACTACTCTCATTCCATTTCATCTCAACCAACAATCCTTACACCATGAACTACAGGTTCATAGCAGCTGATTCACTGCAAAAAACAATCATCCTAACACTCCTTTTCATTTGGTCAAGAACAAGCTCAAGAGGGTCATTAGAATGGTCTATAACACTGTTTTCACTTTCAACACTTCCTAACACACTTGTTATGGGCATTCCTTTGTTAAAAGGAATGTATGGTGATGATTCTGGTACCCTTATGGTTCAAATAGTTGTTCTTCAATGTATCATTTGGTATACATTGATGTTGTTTTTGTTTGAATATAGGGGTGCTAGGATTCTTATTGGTGAACAGTTTCCTGATACTGCTGGTTCTATTATATCATTCAAAGTTGATTCTGATGTTCTTTCTTTGGATGGTAAAGAGCCACTTCAAACTGAAGCTGAAGTTGGTGAAGATGGAAAACTTCATGTCAAAGTTAGAAAATCAACTAGTTCAAGGAGTGAGATTTTTTCTAGAAGGTCTCATGGTGTTAACTCAGGTGTTTCTTTGACACCAAGACCTTCTAATTTGACTAATGCTGAGATTTATTCTCTTCAATCTTCTAGAAACCCTACACCAAGAGGGTCTAGTTTTAATCATACTGATTTTTATTCTATGGTGAATAATGGAAGAAATGTTAGTCCTAGACAATCTAACTTTGGAAGTTTGGGTTTTGACGAGGAAAGTGGTGTTGGTAAAGTTAATGGAAATGGTGGAAATGGCTACCCTGCTCCTCATAGTGCAGGGATTTTTTCACCTGTGGCTAATAAGAAAAAGGGCCATGGTGGTGGTGCTGGTGATGGTGGAAAAGACCTTCATATGTTTGTTTGGAGTTCAAGTGCTTCACCTGTTTCTGAAGGTGGAATCCATGTCTTTAGAGGTGGTGGTGATTATGGAAATGATCAACTTAATGGAGTAGCTCACCAAAAAGAATATGAAGAATTTGGTCATGATGAGTTTAGCTTTGGAAATAGAACTGTTGCTAATGGTGTGGACAAAGAAGGACCAGTGCTATCCAAGCTTGGTTCAAGCTCAACTACTGAGCTTCATCCTAAAGCTGGATCTCAAGGTGAAGCTAAGCCAACAAACATGCCACCTGCTAGTGTTATGACAAGACTCATTTTGATTATGGTGTGGAGAAAATTGATTAGGAATCCTAATACTTATTCCAGCCTTATTGGTCTCACTTGGTCTCTGGTCTCATTCAGGTGGAATGTTGTTATGCCTGCTATTGTTGCCAAGTCTATAGCAATTCTATCTGATGCTGGCCTTGGAATGGCTATGTTTAGCCTTGGGTTGTTCATGGCATTGCAGCCAAGGATTATTGCTTGTGGAAACACCGTTGCTTCTTTCGCGATGGCGGTTCGCTTCCTTACCGGCCCTGCTGTCATGGCTTTTTCTTCATTTGTTGTAGGACTCAGGGGAGTTCTGTTGCACATTGCCATTGTACAGGCTGCTCTTCCCCAAGGAATAGTCCCTTTTGTGTTTGCCAAGGAATACAATGTTCATCCTGACATTCTTAGCACTGGGGTTATATTTGGGATGCTAATTGCTCTTCCTATCACATTAGTTTATTACATTTTGTTGGGACTTTGA

Protein sequence

>Msa1033430

MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIGEQFPDTAGSIISFKVDSDVLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGSLGFDEESGVGKVNGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLNGVAHQKEYEEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL*