Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161840 | XP_013451031.2 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161840 | sp|Q54KZ8|EIF3M_DICDI | 34.957 | 349 | 215 | 7 | 56 | 398 | 50 | 392 | 1.44e-69 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161840 | A0A396HEF3 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001780 | Msa1161840 | 0.803152 | 3.995760e-49 | -8.615850e-47 |
| Msa0283520 | Msa1161840 | 0.806509 | 7.947951e-50 | -8.615850e-47 |
| Msa0332000 | Msa1161840 | 0.807226 | 5.607018e-50 | -8.615850e-47 |
| Msa1108160 | Msa1161840 | 0.811945 | 5.430879e-51 | -8.615850e-47 |
| Msa1161840 | Msa1203710 | 0.801418 | 9.088066e-49 | -8.615850e-47 |
| Msa1161840 | Msa1372760 | 0.801440 | 8.996716e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161840 | MtrunA17_Chr6g0454811 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 827 |
| Msa1161840 | MtrunA17_Chr7g0257481 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 822 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1161840 | AT5G15610.2 | 68.039 | 413 | 129 | 1 | 1 | 410 | 1 | 413 | 0.0 | 594 |
| Msa1161840 | AT5G15610.1 | 63.575 | 442 | 129 | 2 | 1 | 410 | 1 | 442 | 0.0 | 578 |
| Msa1161840 | AT3G02200.2 | 65.228 | 417 | 138 | 1 | 1 | 410 | 1 | 417 | 0.0 | 576 |
| Msa1161840 | AT3G02200.1 | 66.391 | 363 | 122 | 0 | 1 | 363 | 1 | 363 | 0.0 | 511 |
Find 95 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTTATGAACTTATT+AGG | 0.125836 | 7_4:-52141918 | Msa1161840:CDS |
| GTGTAGGAATTTCTTCTTAT+TGG | 0.204693 | 7_4:+52140673 | None:intergenic |
| TTCTTGAAAGAGTGGAAAAT+TGG | 0.210478 | 7_4:-52143686 | Msa1161840:CDS |
| CTGATATAATAGAGCATATT+TGG | 0.216286 | 7_4:+52142196 | None:intergenic |
| TTCTCAAAAGTTTCTGAAAA+AGG | 0.225836 | 7_4:-52144410 | Msa1161840:intron |
| TAATAAGTTCATAAGGAATT+TGG | 0.226927 | 7_4:+52141920 | None:intergenic |
| ATTGATTCTCAAACTGTAAC+TGG | 0.252285 | 7_4:+52145093 | None:intergenic |
| CTACATGAAGGCATTGAATT+TGG | 0.253476 | 7_4:-52143765 | Msa1161840:CDS |
| GATCAATCTGTATAATCTTT+TGG | 0.265502 | 7_4:-52143813 | Msa1161840:CDS |
| CATGTTGTAGTGTGATTTAC+TGG | 0.274248 | 7_4:-52142252 | Msa1161840:intron |
| CTAATTGTATTACTAACTTT+AGG | 0.295249 | 7_4:-52140820 | Msa1161840:three_prime_UTR |
| AATTCCTTATGAACTTATTA+GGG | 0.303697 | 7_4:-52141917 | Msa1161840:CDS |
| CAAGGCGCCTGATGTATTTC+AGG | 0.314874 | 7_4:-52143284 | Msa1161840:intron |
| TCCACCTTATTGAATGACTA+TGG | 0.328479 | 7_4:-52142113 | Msa1161840:intron |
| CAAGGACAACTTGATTCATT+TGG | 0.340745 | 7_4:+52141740 | None:intergenic |
| CCCATCTTCTGATACTTTGT+TGG | 0.341074 | 7_4:+52141017 | None:intergenic |
| ACAATCTCCATGACTTCATC+TGG | 0.341158 | 7_4:+52143991 | None:intergenic |
| AGAAACAGCTCTCTCTGTTC+TGG | 0.342008 | 7_4:+52143659 | None:intergenic |
| CATGCCTGCTGTTGGGCAAC+TGG | 0.343731 | 7_4:-52142228 | Msa1161840:CDS |
| CTACCAAACCTTGGGCTGCC+TGG | 0.362059 | 7_4:+52140992 | None:intergenic |
| TTTACCATAGTCATTCAATA+AGG | 0.369504 | 7_4:+52142109 | None:intergenic |
| TGAATCAAGTTGTCCTTGTT+AGG | 0.370330 | 7_4:-52141735 | Msa1161840:intron |
| TGTGCAGTCATCACACTAAT+CGG | 0.372600 | 7_4:-52141573 | Msa1161840:intron |
| ATGATGATGAAGTTGAACTA+TGG | 0.393896 | 7_4:-52141807 | Msa1161840:CDS |
| GCATTGAATTTGGCTGTTGA+TGG | 0.394749 | 7_4:-52143755 | Msa1161840:CDS |
| ACTTATTAGGGACACACTTC+AGG | 0.395673 | 7_4:-52141905 | Msa1161840:intron |
| TAGACATAAAACTGGCAGTA+TGG | 0.404837 | 7_4:+52143785 | None:intergenic |
| TACTGGACATGCCTGCTGTT+GGG | 0.410514 | 7_4:-52142235 | Msa1161840:CDS |
| TGATACTTTGTTGGCCTGAA+TGG | 0.415532 | 7_4:+52141026 | None:intergenic |
| TCAAGTTAGCAGACTTTGCT+TGG | 0.422910 | 7_4:-52144507 | Msa1161840:CDS |
| AAATGTGATCAGTACCATTC+AGG | 0.428425 | 7_4:-52141040 | Msa1161840:CDS |
| AGGCAAGCTCGGAGGCGAAC+CGG | 0.429688 | 7_4:+52144970 | None:intergenic |
| GAGCTTGCCTGGGCTGATGC+TGG | 0.434353 | 7_4:-52144957 | Msa1161840:CDS |
| CCTTCATGTAGACATAAAAC+TGG | 0.439865 | 7_4:+52143777 | None:intergenic |
| GGCTGAAGAATTCATTGCTA+TGG | 0.447568 | 7_4:-52144483 | Msa1161840:CDS |
| ACACCGCTCTTTCCGTCGTC+CGG | 0.452655 | 7_4:-52144989 | Msa1161840:CDS |
| GATCTCAGCTCTGATGGATC+TGG | 0.452853 | 7_4:-52141943 | Msa1161840:CDS |
| AATCTTCAAGAGAGAGAAGA+AGG | 0.456598 | 7_4:-52140900 | Msa1161840:three_prime_UTR |
| TGCACGCACAGCTTCCTCCT+TGG | 0.458877 | 7_4:+52143321 | None:intergenic |
| TACCAAACCTTGGGCTGCCT+GGG | 0.459892 | 7_4:+52140993 | None:intergenic |
| TTGGTTGATCTCAGCTCTGA+TGG | 0.460760 | 7_4:-52141949 | Msa1161840:CDS |
| GGAAAGAGCGGTGTCTTCTT+CGG | 0.461492 | 7_4:+52144998 | None:intergenic |
| ATTGTATTACTAACTTTAGG+AGG | 0.466661 | 7_4:-52140817 | Msa1161840:three_prime_UTR |
| TCTTGAAAGAGTGGAAAATT+GGG | 0.466987 | 7_4:-52143685 | Msa1161840:CDS |
| AGCATCAGCCCAGGCAAGCT+CGG | 0.471826 | 7_4:+52144959 | None:intergenic |
| CATTGCTATGGGAAAGTGGT+TGG | 0.477727 | 7_4:-52144471 | Msa1161840:CDS |
| ATTGCAGATAATAGTGAAGA+TGG | 0.482900 | 7_4:+52144035 | None:intergenic |
| GTCCCAGGCAGCCCAAGGTT+TGG | 0.483964 | 7_4:-52140995 | Msa1161840:CDS |
| GTGTCCCTAATAAGTTCATA+AGG | 0.487262 | 7_4:+52141913 | None:intergenic |
| AAGTAGCAAGATGATTGGTT+AGG | 0.488595 | 7_4:+52143377 | None:intergenic |
| GCCAACAAAGTATCAGAAGA+TGG | 0.494239 | 7_4:-52141018 | Msa1161840:CDS |
| GTTCGCCTCCGAGCTTGCCT+GGG | 0.495623 | 7_4:-52144967 | Msa1161840:CDS |
| TTACTGGACATGCCTGCTGT+TGG | 0.496081 | 7_4:-52142236 | Msa1161840:CDS |
| TTCTCCAGTTGCCCAACAGC+AGG | 0.499064 | 7_4:+52142224 | None:intergenic |
| CTCAATGAACTACCAAACCT+TGG | 0.499519 | 7_4:+52140983 | None:intergenic |
| AACCATTTGATTGTGTTCAT+CGG | 0.500954 | 7_4:-52140729 | Msa1161840:three_prime_UTR |
| ATCCGATGAACACAATCAAA+TGG | 0.502345 | 7_4:+52140727 | None:intergenic |
| TACATCTTCAATCGCACCGC+AGG | 0.502707 | 7_4:+52143925 | None:intergenic |
| TTCCTTCAAAACATTAGAGA+TGG | 0.510695 | 7_4:+52143634 | None:intergenic |
| CAAGTATCTGGATTATATCC+AGG | 0.513622 | 7_4:-52140935 | Msa1161840:three_prime_UTR |
| CAACGCATTCTTCATGCACA+AGG | 0.515917 | 7_4:+52141992 | None:intergenic |
| CTCGGGACCAGCATCAGCCC+AGG | 0.516732 | 7_4:+52144950 | None:intergenic |
| AGTAGGAACCACCGTGGTCA+TGG | 0.524671 | 7_4:+52145022 | None:intergenic |
| TCAATGAACTACCAAACCTT+GGG | 0.524966 | 7_4:+52140984 | None:intergenic |
| GAACAAAGCTAGTGACTTGG+AGG | 0.528393 | 7_4:-52141519 | Msa1161840:CDS |
| CAAGTTACCTGAAATACATC+AGG | 0.531980 | 7_4:+52143277 | None:intergenic |
| GTGCAGTCATCACACTAATC+GGG | 0.534056 | 7_4:-52141572 | Msa1161840:intron |
| TTGATAGCTTCTTGAAAGAG+TGG | 0.534509 | 7_4:-52143694 | Msa1161840:CDS |
| AATTCATTGCTATGGGAAAG+TGG | 0.536465 | 7_4:-52144475 | Msa1161840:CDS |
| CAAGGTTTGGTAGTTCATTG+AGG | 0.538396 | 7_4:-52140982 | Msa1161840:exon |
| GCGGTGTCTTCTTCGGAAGT+AGG | 0.538848 | 7_4:+52145005 | None:intergenic |
| ACCATAGTCATTCAATAAGG+TGG | 0.547992 | 7_4:+52142112 | None:intergenic |
| GCTGAAGAATTCATTGCTAT+GGG | 0.548812 | 7_4:-52144482 | Msa1161840:CDS |
| TGAGAATCCAGATGAAGTCA+TGG | 0.556784 | 7_4:-52143998 | Msa1161840:CDS |
| AGTTAGCAGACTTTGCTTGG+AGG | 0.561124 | 7_4:-52144504 | Msa1161840:CDS |
| TTGTATTACTAACTTTAGGA+GGG | 0.562136 | 7_4:-52140816 | Msa1161840:three_prime_UTR |
| AAAGTTAATTGACTGTAAGA+TGG | 0.565834 | 7_4:-52141764 | Msa1161840:CDS |
| AGTATCAGAAGATGGGTCCC+AGG | 0.578337 | 7_4:-52141010 | Msa1161840:CDS |
| TATGGGAAAGTGGTTGGAGC+TGG | 0.579039 | 7_4:-52144465 | Msa1161840:CDS |
| TCAAACTGTAACTGGAACTG+TGG | 0.580903 | 7_4:+52145101 | None:intergenic |
| CCAACAAAGTATCAGAAGAT+GGG | 0.582224 | 7_4:-52141017 | Msa1161840:CDS |
| CTCGGAGGCGAACCGGACGA+CGG | 0.583026 | 7_4:+52144977 | None:intergenic |
| TGATGATGAAGTTGAACTAT+GGG | 0.590069 | 7_4:-52141806 | Msa1161840:CDS |
| CTGGGCTGATGCTGGTCCCG+AGG | 0.590869 | 7_4:-52144949 | Msa1161840:intron |
| TGAGAACAAAGCTAGTGACT+TGG | 0.607952 | 7_4:-52141522 | Msa1161840:CDS |
| CGTGGTCATGGTTGTTTGTG+CGG | 0.614036 | 7_4:+52145034 | None:intergenic |
| GAGATGCAACATACCTAACA+AGG | 0.623749 | 7_4:+52141722 | None:intergenic |
| CGCACAAACAACCATGACCA+CGG | 0.649348 | 7_4:-52145033 | Msa1161840:exon |
| ATCAGCCCAGGCAAGCTCGG+AGG | 0.651917 | 7_4:+52144962 | None:intergenic |
| GAACCGGACGACGGAAAGAG+CGG | 0.669076 | 7_4:+52144986 | None:intergenic |
| TGTGTTCATCGGATTTGCTG+CGG | 0.670168 | 7_4:-52140718 | Msa1161840:three_prime_UTR |
| AACAAAGCTAGTGACTTGGA+GGG | 0.674755 | 7_4:-52141518 | Msa1161840:intron |
| GCAGCCAAATGAAAAGCCTG+CGG | 0.678328 | 7_4:-52143941 | Msa1161840:CDS |
| ACAAACAACCATGACCACGG+TGG | 0.776258 | 7_4:-52145030 | Msa1161840:exon |
| TTCGGAAGTAGGAACCACCG+TGG | 0.796354 | 7_4:+52145016 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTATTCGTAAATT+CGG | - | chr7_4:52144150-52144169 | Msa1161840:intron | 10.0% |
| !!! | TTTATTTTTGTTCTATTTAT+AGG | - | chr7_4:52144718-52144737 | Msa1161840:intron | 10.0% |
| !!! | TTATTTTTGTTCTATTTATA+GGG | - | chr7_4:52144719-52144738 | Msa1161840:intron | 10.0% |
| !! | TGAATTTATTAGTATTATCT+TGG | - | chr7_4:52141242-52141261 | Msa1161840:intron | 15.0% |
| !! | ATTATTTCATCAAAACATTT+AGG | + | chr7_4:52143769-52143788 | None:intergenic | 15.0% |
| !! | AAACATCAAATTTATAATTC+CGG | + | chr7_4:52144323-52144342 | None:intergenic | 15.0% |
| !! | GAATATATATTCAATTTACA+GGG | + | chr7_4:52144448-52144467 | None:intergenic | 15.0% |
| !! | TGAATATATATTCAATTTAC+AGG | + | chr7_4:52144449-52144468 | None:intergenic | 15.0% |
| !! | TGTAAATTGAATATATATTC+AGG | - | chr7_4:52144448-52144467 | Msa1161840:CDS | 15.0% |
| !! | TAAAAATTGTGTTTGTGATA+TGG | - | chr7_4:52141012-52141031 | Msa1161840:CDS | 20.0% |
| !!! | TATTATGAGTGATGAATTTT+TGG | - | chr7_4:52141679-52141698 | Msa1161840:intron | 20.0% |
| !!! | ATTATGAGTGATGAATTTTT+GGG | - | chr7_4:52141680-52141699 | Msa1161840:intron | 20.0% |
| !! | TATTCTAAATTAACTGTACA+AGG | + | chr7_4:52142210-52142229 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTTTACTTCTCTT+TGG | - | chr7_4:52142229-52142248 | Msa1161840:CDS | 20.0% |
| !! | AATAACTATGATTGAATGTA+GGG | + | chr7_4:52142586-52142605 | None:intergenic | 20.0% |
| !! | TAATAACTATGATTGAATGT+AGG | + | chr7_4:52142587-52142606 | None:intergenic | 20.0% |
| !! | AAACATAATATCTTCTCAAA+AGG | - | chr7_4:52142619-52142638 | Msa1161840:intron | 20.0% |
| !! | CAGCAAAAAAATCATAAAAA+TGG | + | chr7_4:52142786-52142805 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTGTGTGTTTTTT+TGG | - | chr7_4:52142865-52142884 | Msa1161840:intron | 20.0% |
| !!! | TTGATGAAATAATGTTGTTT+AGG | - | chr7_4:52143776-52143795 | Msa1161840:CDS | 20.0% |
| !! | TAATAAGTTCATAAGGAATT+TGG | + | chr7_4:52143874-52143893 | None:intergenic | 20.0% |
| !! | AAATTCCTTATGAACTTATT+AGG | - | chr7_4:52143873-52143892 | Msa1161840:intron | 20.0% |
| !! | AATTCCTTATGAACTTATTA+GGG | - | chr7_4:52143874-52143893 | Msa1161840:intron | 20.0% |
| !! | TAATTTAACTGTTATACATG+TGG | + | chr7_4:52144410-52144429 | None:intergenic | 20.0% |
| !!! | ATTTTTCACAACATTATTAG+AGG | - | chr7_4:52144587-52144606 | Msa1161840:intron | 20.0% |
| !! | CTAATTGTATTACTAACTTT+AGG | - | chr7_4:52144971-52144990 | Msa1161840:CDS | 20.0% |
| !! | TTCCAATCAAAAATTCAAAA+TGG | + | chr7_4:52145005-52145024 | None:intergenic | 20.0% |
| !!! | CTTCGAGTATATTTTTATAA+TGG | - | chr7_4:52145029-52145048 | Msa1161840:exon | 20.0% |
| ! | GTGTTGTATAAAAGTGAAAT+TGG | - | chr7_4:52140934-52140953 | Msa1161840:three_prime_UTR | 25.0% |
| !!! | TAGTATTATCTTGGTTTGTT+AGG | - | chr7_4:52141251-52141270 | Msa1161840:intron | 25.0% |
| !! | TTCTCAAAAGTTTCTGAAAA+AGG | - | chr7_4:52141381-52141400 | Msa1161840:intron | 25.0% |
| ! | CAGAACTGGATAATAAATTA+TGG | + | chr7_4:52141495-52141514 | None:intergenic | 25.0% |
| ! | TATCTGTGAAACATCAAATT+GGG | + | chr7_4:52141645-52141664 | None:intergenic | 25.0% |
| ! | TTATCTGTGAAACATCAAAT+TGG | + | chr7_4:52141646-52141665 | None:intergenic | 25.0% |
| ! | ATGTAATATTACATCCTACT+TGG | - | chr7_4:52141884-52141903 | Msa1161840:intron | 25.0% |
| ! | TCAAAATTTCAAAACCAAGT+AGG | + | chr7_4:52141901-52141920 | None:intergenic | 25.0% |
| ! | AATAAAATAAGTAGTCACAG+TGG | + | chr7_4:52141933-52141952 | None:intergenic | 25.0% |
| !! | GATCAATCTGTATAATCTTT+TGG | - | chr7_4:52141978-52141997 | Msa1161840:CDS | 25.0% |
| !! | CTATCAATCTTTTTGAATGA+AGG | + | chr7_4:52142084-52142103 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAGGAAAACAAA+AGG | - | chr7_4:52142166-52142185 | Msa1161840:CDS | 25.0% |
| ! | ATAACTATGATTGAATGTAG+GGG | + | chr7_4:52142585-52142604 | None:intergenic | 25.0% |
| !!! | TAGAATTTTTGTTTGCCTTT+TGG | - | chr7_4:52142681-52142700 | Msa1161840:intron | 25.0% |
| !!! | AGTGTCTATTTTTCTCTTAT+AGG | - | chr7_4:52142721-52142740 | Msa1161840:intron | 25.0% |
| !! | AACTTGTGTTTTATATACTC+TGG | - | chr7_4:52142755-52142774 | Msa1161840:intron | 25.0% |
| ! | TTAGTATTATTCAGATTCTG+AGG | - | chr7_4:52143404-52143423 | Msa1161840:CDS | 25.0% |
| ! | CTGATATAATAGAGCATATT+TGG | + | chr7_4:52143598-52143617 | None:intergenic | 25.0% |
| ! | TTTACCATAGTCATTCAATA+AGG | + | chr7_4:52143685-52143704 | None:intergenic | 25.0% |
| ! | AAAGTTAATTGACTGTAAGA+TGG | - | chr7_4:52144027-52144046 | Msa1161840:CDS | 25.0% |
| ! | CATTTCTCATCTATAATTTC+CGG | - | chr7_4:52144301-52144320 | Msa1161840:intron | 25.0% |
| ! | TCGAAAATACCTGTATTATA+GGG | + | chr7_4:52144374-52144393 | None:intergenic | 25.0% |
| ! | TTCGAAAATACCTGTATTAT+AGG | + | chr7_4:52144375-52144394 | None:intergenic | 25.0% |
| !!! | GTATAAAAAGTGTTTACAAC+AGG | + | chr7_4:52144520-52144539 | None:intergenic | 25.0% |
| !! | ATTCGAAGTGTATACATTTT+CGG | - | chr7_4:52144545-52144564 | Msa1161840:intron | 25.0% |
| ! | AAGATTAAAAAAAATCGACC+TGG | + | chr7_4:52144877-52144896 | None:intergenic | 25.0% |
| ! | ATTGTATTACTAACTTTAGG+AGG | - | chr7_4:52144974-52144993 | Msa1161840:CDS | 25.0% |
| !! | TTGTATTACTAACTTTAGGA+GGG | - | chr7_4:52144975-52144994 | Msa1161840:CDS | 25.0% |
| !!! | AGCCATTTTGAATTTTTGAT+TGG | - | chr7_4:52145000-52145019 | Msa1161840:CDS | 25.0% |
| !!! | CGAGTATATTTTTATAATGG+TGG | - | chr7_4:52145032-52145051 | Msa1161840:exon | 25.0% |
| ! | ATTGATTCTCAAACTGTAAC+TGG | + | chr7_4:52140701-52140720 | None:intergenic | 30.0% |
| ! | TAACGTAAGTTTCGTGATTT+TGG | - | chr7_4:52140865-52140884 | Msa1161840:three_prime_UTR | 30.0% |
| ! | AACGTAAGTTTCGTGATTTT+GGG | - | chr7_4:52140866-52140885 | Msa1161840:three_prime_UTR | 30.0% |
| !! | TCAATTTGAGTTGAGTATAC+TGG | - | chr7_4:52140986-52141005 | Msa1161840:CDS | 30.0% |
| AAATGACAGGATTAGAAAGA+TGG | - | chr7_4:52141166-52141185 | Msa1161840:intron | 30.0% | |
| ! | CAAAAGTTTCTGAAAAAGGT+AGG | - | chr7_4:52141385-52141404 | Msa1161840:intron | 30.0% |
| TACTTTACACCAATTCACTA+TGG | + | chr7_4:52141444-52141463 | None:intergenic | 30.0% | |
| ! | ATTATCCAGTTCTGATAGTT+CGG | - | chr7_4:52141501-52141520 | Msa1161840:intron | 30.0% |
| ATTAAGCAGAAAAACAACTG+AGG | + | chr7_4:52141566-52141585 | None:intergenic | 30.0% | |
| ATGTTTCACAGATAAGTGAT+TGG | - | chr7_4:52141651-52141670 | Msa1161840:intron | 30.0% | |
| ATTGCAGATAATAGTGAAGA+TGG | + | chr7_4:52141759-52141778 | None:intergenic | 30.0% | |
| TTCTTGAAAGAGTGGAAAAT+TGG | - | chr7_4:52142105-52142124 | Msa1161840:intron | 30.0% | |
| TCTTGAAAGAGTGGAAAATT+GGG | - | chr7_4:52142106-52142125 | Msa1161840:intron | 30.0% | |
| TTCCTTCAAAACATTAGAGA+TGG | + | chr7_4:52142160-52142179 | None:intergenic | 30.0% | |
| !!! | TTTTTACTTCTCTTTGGAGT+AGG | - | chr7_4:52142235-52142254 | Msa1161840:CDS | 30.0% |
| AGAAAAAGTAGCAAGATGAT+TGG | + | chr7_4:52142422-52142441 | None:intergenic | 30.0% | |
| !!! | AATCATCTTGCTACTTTTTC+TGG | - | chr7_4:52142421-52142440 | Msa1161840:intron | 30.0% |
| !!! | TGCAATTGTTGATTTTGTCA+AGG | - | chr7_4:52142489-52142508 | Msa1161840:intron | 30.0% |
| ! | AGGTAACTTGTGTAATAATG+AGG | - | chr7_4:52142527-52142546 | Msa1161840:intron | 30.0% |
| ATATCTTCTCAAAAGGTGAT+AGG | - | chr7_4:52142626-52142645 | Msa1161840:intron | 30.0% | |
| TATCTTCTCAAAAGGTGATA+GGG | - | chr7_4:52142627-52142646 | Msa1161840:intron | 30.0% | |
| TGCAGATAACAACATAAAAG+TGG | + | chr7_4:52142653-52142672 | None:intergenic | 30.0% | |
| !! | CTATTTTTCTCTTATAGGCA+AGG | - | chr7_4:52142726-52142745 | Msa1161840:intron | 30.0% |
| CACTATTATGATTACTAGCA+AGG | + | chr7_4:52143193-52143212 | None:intergenic | 30.0% | |
| TTTATCCCGAGTCATAAATA+AGG | + | chr7_4:52143238-52143257 | None:intergenic | 30.0% | |
| TAATCTTTACAATCAGCAAG+TGG | - | chr7_4:52143317-52143336 | Msa1161840:CDS | 30.0% | |
| AATCTTTACAATCAGCAAGT+GGG | - | chr7_4:52143318-52143337 | Msa1161840:CDS | 30.0% | |
| ! | TCAAGATTTTTCTTACTCAG+AGG | - | chr7_4:52143622-52143641 | Msa1161840:intron | 30.0% |
| TGGTAAATACTGTTCACAAT+TGG | - | chr7_4:52143698-52143717 | Msa1161840:CDS | 30.0% | |
| AAAAATGCGATTGATGTCAT+TGG | - | chr7_4:52143823-52143842 | Msa1161840:intron | 30.0% | |
| TCATCATCATTGATCTGAAA+GGG | + | chr7_4:52143974-52143993 | None:intergenic | 30.0% | |
| TTCATCATCATTGATCTGAA+AGG | + | chr7_4:52143975-52143994 | None:intergenic | 30.0% | |
| ! | ATGATGATGAAGTTGAACTA+TGG | - | chr7_4:52143984-52144003 | Msa1161840:CDS | 30.0% |
| ! | TGATGATGAAGTTGAACTAT+GGG | - | chr7_4:52143985-52144004 | Msa1161840:CDS | 30.0% |
| !! | TCAATTTCTAGCCTTTATTC+TGG | - | chr7_4:52144090-52144109 | Msa1161840:intron | 30.0% |
| ! | TAGCCTTTATTCTGGTTATA+GGG | - | chr7_4:52144098-52144117 | Msa1161840:intron | 30.0% |
| AAAAAATAGCTACAGCCATA+AGG | + | chr7_4:52144138-52144157 | None:intergenic | 30.0% | |
| ATAAAAATCGCATTCAGGAA+TGG | + | chr7_4:52144496-52144515 | None:intergenic | 30.0% | |
| CAAACTGTTATTAAGTGCAT+AGG | + | chr7_4:52144636-52144655 | None:intergenic | 30.0% | |
| AAGTAACTCAGTTGAAACAA+TGG | + | chr7_4:52144684-52144703 | None:intergenic | 30.0% | |
| AACCATTTGATTGTGTTCAT+CGG | - | chr7_4:52145062-52145081 | Msa1161840:five_prime_UTR | 30.0% | |
| ! | ACGTAAGTTTCGTGATTTTG+GGG | - | chr7_4:52140867-52140886 | Msa1161840:three_prime_UTR | 35.0% |
| !! | AAATGATGCTGTGTTGTTTG+TGG | - | chr7_4:52141037-52141056 | Msa1161840:CDS | 35.0% |
| GTGTTAAGACTTGAAATGAC+AGG | - | chr7_4:52141153-52141172 | Msa1161840:intron | 35.0% | |
| AGAAAGATGGTATTTGTGAG+CGG | - | chr7_4:52141179-52141198 | Msa1161840:intron | 35.0% | |
| GCTGAAGAATTCATTGCTAT+GGG | - | chr7_4:52141309-52141328 | Msa1161840:intron | 35.0% | |
| AATTCATTGCTATGGGAAAG+TGG | - | chr7_4:52141316-52141335 | Msa1161840:intron | 35.0% | |
| GCTTAATGATGTTGTATCTG+TGG | - | chr7_4:52141579-52141598 | Msa1161840:intron | 35.0% | |
| TAGACATAAAACTGGCAGTA+TGG | + | chr7_4:52142009-52142028 | None:intergenic | 35.0% | |
| CCTTCATGTAGACATAAAAC+TGG | + | chr7_4:52142017-52142036 | None:intergenic | 35.0% | |
| !! | CCAGTTTTATGTCTACATGA+AGG | - | chr7_4:52142014-52142033 | Msa1161840:intron | 35.0% |
| !! | CTACATGAAGGCATTGAATT+TGG | - | chr7_4:52142026-52142045 | Msa1161840:intron | 35.0% |
| ! | TTGATAGCTTCTTGAAAGAG+TGG | - | chr7_4:52142097-52142116 | Msa1161840:intron | 35.0% |
| !! | CACCATCTCTAATGTTTTGA+AGG | - | chr7_4:52142155-52142174 | Msa1161840:CDS | 35.0% |
| TATATGACTACTGACCGAAT+GGG | + | chr7_4:52142302-52142321 | None:intergenic | 35.0% | |
| ATATATGACTACTGACCGAA+TGG | + | chr7_4:52142303-52142322 | None:intergenic | 35.0% | |
| TTACACAAGAACAGAGATTG+AGG | + | chr7_4:52142331-52142350 | None:intergenic | 35.0% | |
| ! | TTTTTATCTCAGCATGTCGA+AGG | - | chr7_4:52142378-52142397 | Msa1161840:intron | 35.0% |
| ! | AAGTAGCAAGATGATTGGTT+AGG | + | chr7_4:52142417-52142436 | None:intergenic | 35.0% |
| CAAGTTACCTGAAATACATC+AGG | + | chr7_4:52142517-52142536 | None:intergenic | 35.0% | |
| AGACACTACAAGATGATAGA+CGG | + | chr7_4:52142708-52142727 | None:intergenic | 35.0% | |
| !! | TTGCAACTGATTTTGCAACT+TGG | + | chr7_4:52142901-52142920 | None:intergenic | 35.0% |
| GTTGAGTCACAAAAAGAAAG+AGG | + | chr7_4:52143063-52143082 | None:intergenic | 35.0% | |
| ! | TGAACCATTAGTCTCTCTTA+TGG | + | chr7_4:52143149-52143168 | None:intergenic | 35.0% |
| !! | TTGCTGCCTTATTTATGACT+CGG | - | chr7_4:52143229-52143248 | Msa1161840:intron | 35.0% |
| CATGTTGTAGTGTGATTTAC+TGG | - | chr7_4:52143539-52143558 | Msa1161840:intron | 35.0% | |
| TCCACCTTATTGAATGACTA+TGG | - | chr7_4:52143678-52143697 | Msa1161840:CDS | 35.0% | |
| ACCATAGTCATTCAATAAGG+TGG | + | chr7_4:52143682-52143701 | None:intergenic | 35.0% | |
| ACATTTAGGTAGAAACACAG+TGG | + | chr7_4:52143755-52143774 | None:intergenic | 35.0% | |
| GTGTCCCTAATAAGTTCATA+AGG | + | chr7_4:52143881-52143900 | None:intergenic | 35.0% | |
| CAAGGACAACTTGATTCATT+TGG | + | chr7_4:52144054-52144073 | None:intergenic | 35.0% | |
| ! | TGAATCAAGTTGTCCTTGTT+AGG | - | chr7_4:52144056-52144075 | Msa1161840:intron | 35.0% |
| ! | CTAGCCTTTATTCTGGTTAT+AGG | - | chr7_4:52144097-52144116 | Msa1161840:intron | 35.0% |
| ATGCCCTATAACCAGAATAA+AGG | + | chr7_4:52144104-52144123 | None:intergenic | 35.0% | |
| AATTTCAATCTGACTGACAC+AGG | + | chr7_4:52144661-52144680 | None:intergenic | 35.0% | |
| AAATGTGATCAGTACCATTC+AGG | - | chr7_4:52144751-52144770 | Msa1161840:intron | 35.0% | |
| ! | CCAACAAAGTATCAGAAGAT+GGG | - | chr7_4:52144774-52144793 | Msa1161840:intron | 35.0% |
| TCAATGAACTACCAAACCTT+GGG | + | chr7_4:52144810-52144829 | None:intergenic | 35.0% | |
| !! | GAAGCATTTTGTCAAGTATC+TGG | - | chr7_4:52144844-52144863 | Msa1161840:intron | 35.0% |
| CAAGTATCTGGATTATATCC+AGG | - | chr7_4:52144856-52144875 | Msa1161840:intron | 35.0% | |
| AATCTTCAAGAGAGAGAAGA+AGG | - | chr7_4:52144891-52144910 | Msa1161840:intron | 35.0% | |
| ATCCGATGAACACAATCAAA+TGG | + | chr7_4:52145067-52145086 | None:intergenic | 35.0% | |
| TCAAACTGTAACTGGAACTG+TGG | + | chr7_4:52140693-52140712 | None:intergenic | 40.0% | |
| TCACGAAACTTACGTTACCT+CGG | + | chr7_4:52140862-52140881 | None:intergenic | 40.0% | |
| !! | GTTTCGTGATTTTGGGGATT+TGG | - | chr7_4:52140873-52140892 | Msa1161840:three_prime_UTR | 40.0% |
| !!! | TTTGGGGATTTGGTTGGTTT+TGG | - | chr7_4:52140883-52140902 | Msa1161840:three_prime_UTR | 40.0% |
| !!! | TTGGGGATTTGGTTGGTTTT+GGG | - | chr7_4:52140884-52140903 | Msa1161840:three_prime_UTR | 40.0% |
| CTTAGGGAATGTGAAAGTTG+AGG | - | chr7_4:52141060-52141079 | Msa1161840:intron | 40.0% | |
| TCAAGTTAGCAGACTTTGCT+TGG | - | chr7_4:52141284-52141303 | Msa1161840:intron | 40.0% | |
| GGCTGAAGAATTCATTGCTA+TGG | - | chr7_4:52141308-52141327 | Msa1161840:intron | 40.0% | |
| TTCAACCGAACTATCAGAAC+TGG | + | chr7_4:52141509-52141528 | None:intergenic | 40.0% | |
| ! | GCGTTTTTCACTTTCCAGTT+AGG | - | chr7_4:52141617-52141636 | Msa1161840:intron | 40.0% |
| CATCAAATTGGGTTCCTAAC+TGG | + | chr7_4:52141634-52141653 | None:intergenic | 40.0% | |
| TGAGAATCCAGATGAAGTCA+TGG | - | chr7_4:52141793-52141812 | Msa1161840:CDS | 40.0% | |
| ACAATCTCCATGACTTCATC+TGG | + | chr7_4:52141803-52141822 | None:intergenic | 40.0% | |
| GCATTGAATTTGGCTGTTGA+TGG | - | chr7_4:52142036-52142055 | Msa1161840:intron | 40.0% | |
| !!! | TGCTACTTTTTCTGGAGAAG+AGG | - | chr7_4:52142429-52142448 | Msa1161840:intron | 40.0% |
| CTATGATTGAATGTAGGGGA+CGG | + | chr7_4:52142581-52142600 | None:intergenic | 40.0% | |
| TCATAGTTATTAGTCGCAGC+TGG | - | chr7_4:52142595-52142614 | Msa1161840:intron | 40.0% | |
| AAGATGATAGACGGTCCAAA+AGG | + | chr7_4:52142699-52142718 | None:intergenic | 40.0% | |
| ! | AATTTTCACAGCGATTCCAC+TGG | + | chr7_4:52142821-52142840 | None:intergenic | 40.0% |
| TGAGAAACCAGAAAGAGAAG+AGG | + | chr7_4:52143024-52143043 | None:intergenic | 40.0% | |
| CTCTAGGCATCAAAGAAAAC+TGG | + | chr7_4:52143121-52143140 | None:intergenic | 40.0% | |
| TTTCTTTGATGCCTAGAGTG+AGG | - | chr7_4:52143123-52143142 | Msa1161840:intron | 40.0% | |
| GAGTCATAAATAAGGCAGCA+AGG | + | chr7_4:52143230-52143249 | None:intergenic | 40.0% | |
| !! | TGCTGCCTTATTTATGACTC+GGG | - | chr7_4:52143230-52143249 | Msa1161840:intron | 40.0% |
| GAGTTAGACTCTTGCTTAGA+TGG | - | chr7_4:52143435-52143454 | Msa1161840:intron | 40.0% | |
| ACTTATTAGGGACACACTTC+AGG | - | chr7_4:52143886-52143905 | Msa1161840:intron | 40.0% | |
| GAGATGCAACATACCTAACA+AGG | + | chr7_4:52144072-52144091 | None:intergenic | 40.0% | |
| TGTGCAGTCATCACACTAAT+CGG | - | chr7_4:52144218-52144237 | Msa1161840:intron | 40.0% | |
| ! | CATCACACTAATCGGGTTTT+TGG | - | chr7_4:52144226-52144245 | Msa1161840:intron | 40.0% |
| TGAGAACAAAGCTAGTGACT+TGG | - | chr7_4:52144269-52144288 | Msa1161840:intron | 40.0% | |
| ! | AACAAAGCTAGTGACTTGGA+GGG | - | chr7_4:52144273-52144292 | Msa1161840:intron | 40.0% |
| TGATGCGATCCCTATAATAC+AGG | - | chr7_4:52144362-52144381 | Msa1161840:intron | 40.0% | |
| CAGGCATAAAAATCGCATTC+AGG | + | chr7_4:52144501-52144520 | None:intergenic | 40.0% | |
| ! | TGATACTTTGTTGGCCTGAA+TGG | + | chr7_4:52144768-52144787 | None:intergenic | 40.0% |
| ! | GCCAACAAAGTATCAGAAGA+TGG | - | chr7_4:52144773-52144792 | Msa1161840:intron | 40.0% |
| CCCATCTTCTGATACTTTGT+TGG | + | chr7_4:52144777-52144796 | None:intergenic | 40.0% | |
| CTCAATGAACTACCAAACCT+TGG | + | chr7_4:52144811-52144830 | None:intergenic | 40.0% | |
| ! | CAAGGTTTGGTAGTTCATTG+AGG | - | chr7_4:52144809-52144828 | Msa1161840:intron | 40.0% |
| CACGAAACTTACGTTACCTC+GGG | + | chr7_4:52140861-52140880 | None:intergenic | 45.0% | |
| !! | CGTGATTTTGGGGATTTGGT+TGG | - | chr7_4:52140877-52140896 | Msa1161840:three_prime_UTR | 45.0% |
| !!! | TGGGGATTTGGTTGGTTTTG+GGG | - | chr7_4:52140885-52140904 | Msa1161840:three_prime_UTR | 45.0% |
| !! | TGCTGTGTTGTTTGTGGCTT+AGG | - | chr7_4:52141043-52141062 | Msa1161840:CDS | 45.0% |
| !! | GCTGTGTTGTTTGTGGCTTA+GGG | - | chr7_4:52141044-52141063 | Msa1161840:CDS | 45.0% |
| AGTTAGCAGACTTTGCTTGG+AGG | - | chr7_4:52141287-52141306 | Msa1161840:intron | 45.0% | |
| CATTGCTATGGGAAAGTGGT+TGG | - | chr7_4:52141320-52141339 | Msa1161840:intron | 45.0% | |
| ! | GCTGCTTTGCCATAGTGAAT+TGG | - | chr7_4:52141432-52141451 | Msa1161840:intron | 45.0% |
| ! | GTGAAGATGGACTCTACATC+TGG | + | chr7_4:52141746-52141765 | None:intergenic | 45.0% |
| AGAAACAGCTCTCTCTGTTC+TGG | + | chr7_4:52142135-52142154 | None:intergenic | 45.0% | |
| CATCAGTCTCACTACCCATT+CGG | - | chr7_4:52142285-52142304 | Msa1161840:intron | 45.0% | |
| CAAGAACAGAGATTGAGGTG+TGG | + | chr7_4:52142326-52142345 | None:intergenic | 45.0% | |
| !! | GCATGTTTTGAGTGAAGCCA+AGG | - | chr7_4:52142453-52142472 | Msa1161840:intron | 45.0% |
| !! | TGTTTTGAGTGAAGCCAAGG+AGG | - | chr7_4:52142456-52142475 | Msa1161840:intron | 45.0% |
| AGAAAGAGAAGAGGCTGCAA+CGG | + | chr7_4:52143015-52143034 | None:intergenic | 45.0% | |
| GAGGCCATAAGAGAGACTAA+TGG | - | chr7_4:52143142-52143161 | Msa1161840:intron | 45.0% | |
| CTAGCAAGGTCATAGCTTCA+TGG | + | chr7_4:52143179-52143198 | None:intergenic | 45.0% | |
| CAACGCATTCTTCATGCACA+AGG | + | chr7_4:52143802-52143821 | None:intergenic | 45.0% | |
| ! | TTGGTTGATCTCAGCTCTGA+TGG | - | chr7_4:52143842-52143861 | Msa1161840:intron | 45.0% |
| GCATGTAGACATGCACCTTA+TGG | - | chr7_4:52144120-52144139 | Msa1161840:intron | 45.0% | |
| GTGCAGTCATCACACTAATC+GGG | - | chr7_4:52144219-52144238 | Msa1161840:intron | 45.0% | |
| !!! | GGGTTTTTGGTCAGCATCAA+TGG | - | chr7_4:52144239-52144258 | Msa1161840:intron | 45.0% |
| ! | GAACAAAGCTAGTGACTTGG+AGG | - | chr7_4:52144272-52144291 | Msa1161840:intron | 45.0% |
| !! | TGTGTTCATCGGATTTGCTG+CGG | - | chr7_4:52145073-52145092 | Msa1161840:five_prime_UTR | 45.0% |
| CGTGGTCATGGTTGTTTGTG+CGG | + | chr7_4:52140760-52140779 | None:intergenic | 50.0% | |
| CGCACAAACAACCATGACCA+CGG | - | chr7_4:52140758-52140777 | Msa1161840:three_prime_UTR | 50.0% | |
| ACAAACAACCATGACCACGG+TGG | - | chr7_4:52140761-52140780 | Msa1161840:three_prime_UTR | 50.0% | |
| GGAAAGAGCGGTGTCTTCTT+CGG | + | chr7_4:52140796-52140815 | None:intergenic | 50.0% | |
| TATGGGAAAGTGGTTGGAGC+TGG | - | chr7_4:52141326-52141345 | Msa1161840:intron | 50.0% | |
| GCAGCCAAATGAAAAGCCTG+CGG | - | chr7_4:52141850-52141869 | Msa1161840:intron | 50.0% | |
| TACATCTTCAATCGCACCGC+AGG | + | chr7_4:52141869-52141888 | None:intergenic | 50.0% | |
| ! | CAAGGCGCCTGATGTATTTC+AGG | - | chr7_4:52142507-52142526 | Msa1161840:intron | 50.0% |
| ! | TCACAGCGATTCCACTGGTT+CGG | + | chr7_4:52142816-52142835 | None:intergenic | 50.0% |
| AGATGTGTCGCAACTCGCAA+AGG | + | chr7_4:52142979-52142998 | None:intergenic | 50.0% | |
| GTTGCAGCCTCTTCTCTTTC+TGG | - | chr7_4:52143014-52143033 | Msa1161840:intron | 50.0% | |
| CTCTCTTATGGCCTCACTCT+AGG | + | chr7_4:52143137-52143156 | None:intergenic | 50.0% | |
| TTACTGGACATGCCTGCTGT+TGG | - | chr7_4:52143555-52143574 | Msa1161840:intron | 50.0% | |
| TACTGGACATGCCTGCTGTT+GGG | - | chr7_4:52143556-52143575 | Msa1161840:intron | 50.0% | |
| ! | GATCTCAGCTCTGATGGATC+TGG | - | chr7_4:52143848-52143867 | Msa1161840:intron | 50.0% |
| AGTATCAGAAGATGGGTCCC+AGG | - | chr7_4:52144781-52144800 | Msa1161840:intron | 50.0% | |
| AGTAGGAACCACCGTGGTCA+TGG | + | chr7_4:52140772-52140791 | None:intergenic | 55.0% | |
| TTCGGAAGTAGGAACCACCG+TGG | + | chr7_4:52140778-52140797 | None:intergenic | 55.0% | |
| GCGGTGTCTTCTTCGGAAGT+AGG | + | chr7_4:52140789-52140808 | None:intergenic | 55.0% | |
| ! | CGCACCGCAGGCTTTTCATT+TGG | + | chr7_4:52141857-52141876 | None:intergenic | 55.0% |
| GCTGAGAGATTCCGAACCAG+TGG | - | chr7_4:52142802-52142821 | Msa1161840:intron | 55.0% | |
| GAGGCTGCAACGGAGAGAAT+TGG | + | chr7_4:52143005-52143024 | None:intergenic | 55.0% | |
| TTCTCCAGTTGCCCAACAGC+AGG | + | chr7_4:52143570-52143589 | None:intergenic | 55.0% | |
| TACCAAACCTTGGGCTGCCT+GGG | + | chr7_4:52144801-52144820 | None:intergenic | 55.0% | |
| ACACCGCTCTTTCCGTCGTC+CGG | - | chr7_4:52140802-52140821 | Msa1161840:three_prime_UTR | 60.0% | |
| GAACCGGACGACGGAAAGAG+CGG | + | chr7_4:52140808-52140827 | None:intergenic | 60.0% | |
| AGCATCAGCCCAGGCAAGCT+CGG | + | chr7_4:52140835-52140854 | None:intergenic | 60.0% | |
| TGCACGCACAGCTTCCTCCT+TGG | + | chr7_4:52142473-52142492 | None:intergenic | 60.0% | |
| AGAGACGCGACAGGGAGAAG+GGG | + | chr7_4:52142956-52142975 | None:intergenic | 60.0% | |
| GAGAGACGCGACAGGGAGAA+GGG | + | chr7_4:52142957-52142976 | None:intergenic | 60.0% | |
| CGCAAAGGAGAGACGCGACA+GGG | + | chr7_4:52142964-52142983 | None:intergenic | 60.0% | |
| TCGCAAAGGAGAGACGCGAC+AGG | + | chr7_4:52142965-52142984 | None:intergenic | 60.0% | |
| CATGCCTGCTGTTGGGCAAC+TGG | - | chr7_4:52143563-52143582 | Msa1161840:intron | 60.0% | |
| CTACCAAACCTTGGGCTGCC+TGG | + | chr7_4:52144802-52144821 | None:intergenic | 60.0% | |
| AGGCAAGCTCGGAGGCGAAC+CGG | + | chr7_4:52140824-52140843 | None:intergenic | 65.0% | |
| GTTCGCCTCCGAGCTTGCCT+GGG | - | chr7_4:52140824-52140843 | Msa1161840:three_prime_UTR | 65.0% | |
| ATCAGCCCAGGCAAGCTCGG+AGG | + | chr7_4:52140832-52140851 | None:intergenic | 65.0% | |
| GAGCTTGCCTGGGCTGATGC+TGG | - | chr7_4:52140834-52140853 | Msa1161840:three_prime_UTR | 65.0% | |
| GGAGAGACGCGACAGGGAGA+AGG | + | chr7_4:52142958-52142977 | None:intergenic | 65.0% | |
| GTCCCAGGCAGCCCAAGGTT+TGG | - | chr7_4:52144796-52144815 | Msa1161840:intron | 65.0% | |
| CTCGGAGGCGAACCGGACGA+CGG | + | chr7_4:52140817-52140836 | None:intergenic | 70.0% | |
| GGTTCGCCTCCGAGCTTGCC+TGG | - | chr7_4:52140823-52140842 | Msa1161840:three_prime_UTR | 70.0% | |
| CTCGGGACCAGCATCAGCCC+AGG | + | chr7_4:52140844-52140863 | None:intergenic | 70.0% | |
| CTGGGCTGATGCTGGTCCCG+AGG | - | chr7_4:52140842-52140861 | Msa1161840:three_prime_UTR | 70.0% | |
| GATGGGTCCCAGGCAGCCCA+AGG | - | chr7_4:52144791-52144810 | Msa1161840:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 52140680 | 52145133 | 52140680 | ID=Msa1161840;Name=Msa1161840 |
| chr7_4 | mRNA | 52140680 | 52145133 | 52140680 | ID=Msa1161840-mRNA-1;Parent=Msa1161840;Name=Msa1161840-mRNA-1;_AED=0.12;_eAED=0.12;_QI=91|1|1|1|1|1|10|304|410 |
| chr7_4 | exon | 52140680 | 52141073 | 52140680 | ID=Msa1161840-mRNA-1:exon:14948;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52141519 | 52141588 | 52141519 | ID=Msa1161840-mRNA-1:exon:14947;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52141736 | 52141833 | 52141736 | ID=Msa1161840-mRNA-1:exon:14946;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52141906 | 52142015 | 52141906 | ID=Msa1161840-mRNA-1:exon:14945;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52142114 | 52142264 | 52142114 | ID=Msa1161840-mRNA-1:exon:14944;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52143285 | 52143423 | 52143285 | ID=Msa1161840-mRNA-1:exon:14943;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52143626 | 52143838 | 52143626 | ID=Msa1161840-mRNA-1:exon:14942;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52143928 | 52144066 | 52143928 | ID=Msa1161840-mRNA-1:exon:14941;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52144411 | 52144540 | 52144411 | ID=Msa1161840-mRNA-1:exon:14940;Parent=Msa1161840-mRNA-1 |
| chr7_4 | exon | 52144950 | 52145133 | 52144950 | ID=Msa1161840-mRNA-1:exon:14939;Parent=Msa1161840-mRNA-1 |
| chr7_4 | five_prime_UTR | 52145043 | 52145133 | 52145043 | ID=Msa1161840-mRNA-1:five_prime_utr;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52144950 | 52145042 | 52144950 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52144411 | 52144540 | 52144411 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52143928 | 52144066 | 52143928 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52143626 | 52143838 | 52143626 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52143285 | 52143423 | 52143285 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52142114 | 52142264 | 52142114 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52141906 | 52142015 | 52141906 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52141736 | 52141833 | 52141736 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52141519 | 52141588 | 52141519 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | CDS | 52140984 | 52141073 | 52140984 | ID=Msa1161840-mRNA-1:cds;Parent=Msa1161840-mRNA-1 |
| chr7_4 | three_prime_UTR | 52140680 | 52140983 | 52140680 | ID=Msa1161840-mRNA-1:three_prime_utr;Parent=Msa1161840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
