AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0332000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332000 MtrunA17_Chr2g0298701 93.166 717 32 3 1 710 1 707 0.0 1300
Msa0332000 MtrunA17_Chr1g0207661 47.210 233 115 3 139 371 245 469 4.26e-58 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0332000 AT4G29940.1 58.118 425 158 5 136 546 97 515 1.19e-155 471
Msa0332000 AT4G29940.2 58.118 425 158 5 136 546 97 515 1.33e-155 469
Msa0332000 AT3G19510.1 47.177 248 121 3 123 369 158 396 5.17e-61 218
Msa0332000 AT3G19510.2 47.177 248 121 3 123 369 158 396 5.17e-61 218

Find 144 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGCATCACAATCTTTA+AGG 0.134962 2_4:+48304993 None:intergenic
CCCAAGTGTGGAGGTATTTC+TGG 0.146341 2_4:+48300050 None:intergenic
AGGGCGTCCTTCACGGATTT+TGG 0.158407 2_4:+48300720 None:intergenic
GATGGATAGGAAATTGAAAT+TGG 0.159981 2_4:+48304922 None:intergenic
AAGAACAATGATAGAATAAA+AGG 0.187496 2_4:-48300958 Msa0332000:CDS
TCCAGCATGTGGTCTTTAAA+TGG 0.227946 2_4:-48301728 Msa0332000:CDS
ATCCTTGGTTGGCACCTTAT+TGG 0.235926 2_4:+48303478 None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG 0.247836 2_4:+48302470 None:intergenic
CCTCCACACTTGGGAGAAAA+TGG 0.255233 2_4:-48300041 Msa0332000:CDS
CTATCATTGTTCTTATTATT+CGG 0.255964 2_4:+48300967 None:intergenic
CTGAAATTGAAGAGAAAATA+TGG 0.293844 2_4:+48304784 None:intergenic
AACCTGCCAAGTACTGTCTA+AGG 0.296673 2_4:+48302382 None:intergenic
TCAGTCTGTCTTTCTTCCTT+TGG 0.302813 2_4:+48303564 None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG 0.343007 2_4:+48301809 None:intergenic
AGATATTCCTTGTTCTTCTC+TGG 0.348606 2_4:+48303246 None:intergenic
TGACTGTAAGATAGAAATAT+TGG 0.355208 2_4:-48302438 Msa0332000:CDS
GGATTATAGTCATCGTCTTC+AGG 0.355847 2_4:+48301830 None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG 0.358216 2_4:+48300713 None:intergenic
AGCTACTGATTCTTCCAATA+AGG 0.369588 2_4:-48303492 Msa0332000:CDS
AGAATAAAAGGGAATTCTTC+AGG 0.374854 2_4:-48300946 Msa0332000:CDS
CAGAGTATAATATCATTATC+TGG 0.390452 2_4:+48302660 None:intergenic
CTTTAAGGTTCTTGTTGTGT+TGG 0.395929 2_4:+48305008 None:intergenic
GAAGATGAAGATTGGGGTCC+TGG 0.398942 2_4:-48301066 Msa0332000:CDS
AGATTGAAGCAAAGATTAAC+TGG 0.399258 2_4:-48299160 Msa0332000:CDS
GGACGCCCTTTCGAAAGAAA+TGG 0.401279 2_4:-48300706 Msa0332000:CDS
ATGGATAGGAAATTGAAATT+GGG 0.404420 2_4:+48304923 None:intergenic
TATCCATCATTCAATCGAAA+AGG 0.404944 2_4:-48304907 Msa0332000:five_prime_UTR
AAGAAGTGTGAAAATGTTAC+TGG 0.405838 2_4:-48300119 Msa0332000:CDS
ATGTTCCTATAGCTGAGTTA+AGG 0.407231 2_4:-48299078 Msa0332000:CDS
AAACTTCTCTTAATCATGAT+AGG 0.417638 2_4:-48303379 Msa0332000:CDS
AGTTCAGTTGGTAGTATTGA+AGG 0.418881 2_4:-48302858 Msa0332000:CDS
CACATAGATTCTGATGAATC+CGG 0.421682 2_4:-48301653 Msa0332000:CDS
CCGTGATGCCATTCACCAAC+TGG 0.421979 2_4:-48302889 Msa0332000:CDS
GAGATGTCTTGATCCTCCTT+TGG 0.422829 2_4:-48302607 Msa0332000:CDS
AGATTCCCAATGTTGATACT+AGG 0.428050 2_4:+48304950 None:intergenic
AGTGAGTGAAGATGAAGATT+GGG 0.435286 2_4:-48301073 Msa0332000:CDS
CCCCTTAGACAGTACTTGGC+AGG 0.439188 2_4:-48302384 Msa0332000:intron
ATAGGAACATACATAATAGA+TGG 0.443496 2_4:+48299091 None:intergenic
GGAGTTCAAAATTGCAGATC+GGG 0.444432 2_4:-48299139 Msa0332000:CDS
CGATAATGCAGGTTAACAAA+TGG 0.446754 2_4:-48300505 Msa0332000:intron
ACATGTTCCTTTGTGTTACT+CGG 0.451425 2_4:+48303635 None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG 0.455270 2_4:-48299077 Msa0332000:CDS
TAATGAAACTATTGCAAGAA+AGG 0.457497 2_4:-48299273 Msa0332000:CDS
AGACTCCGAGGCAGCAGAGT+TGG 0.457827 2_4:-48299221 Msa0332000:CDS
AAGTGAGTGAAGATGAAGAT+TGG 0.458660 2_4:-48301074 Msa0332000:CDS
AGGCAACAAACGCGCATCTT+GGG 0.460252 2_4:-48302415 Msa0332000:CDS
GAGGCAACAAACGCGCATCT+TGG 0.466032 2_4:-48302416 Msa0332000:CDS
AAATTCCAACTCTGCTGCCT+CGG 0.470562 2_4:+48299216 None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG 0.473153 2_4:-48302870 Msa0332000:CDS
ATTTCCCCTTAGACAGTACT+TGG 0.477866 2_4:-48302388 Msa0332000:CDS
AAAGTCTACATAAAACTGAT+AGG 0.478611 2_4:-48303427 Msa0332000:CDS
GGTAATAATACATTAATGTA+TGG 0.479759 2_4:-48298992 Msa0332000:three_prime_UTR
TTCCTCCTGAAGACCAAGGC+TGG 0.484945 2_4:-48302475 Msa0332000:CDS
CAAGTCCCATTTCTTTCGAA+AGG 0.486339 2_4:+48300700 None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG 0.488966 2_4:-48299071 Msa0332000:CDS
GAAAATTTATAACTTCAAAC+CGG 0.490601 2_4:+48298937 None:intergenic
AGAACAATGATAGAATAAAA+GGG 0.492512 2_4:-48300957 Msa0332000:CDS
GACGCCCTTTCGAAAGAAAT+GGG 0.493793 2_4:-48300705 Msa0332000:CDS
AGTAATGCAGCATCGCCGTC+AGG 0.494282 2_4:+48301884 None:intergenic
ACCAGAAATACCTCCACACT+TGG 0.495132 2_4:-48300051 Msa0332000:CDS
AAGTCCCATTTCTTTCGAAA+GGG 0.495232 2_4:+48300701 None:intergenic
CTTCTGTGTTGATGCCACCA+TGG 0.498525 2_4:+48301789 None:intergenic
TACTAAATCAAGAAGAAGAA+TGG 0.501022 2_4:-48301865 Msa0332000:CDS
GTACAATGAAATGAAGCAAC+CGG 0.503191 2_4:-48298956 Msa0332000:three_prime_UTR
CTCCAGCGTAAGCATCGATA+AGG 0.509397 2_4:+48303198 None:intergenic
TTATTTGAAGAATCCTTGGT+TGG 0.511651 2_4:+48303467 None:intergenic
ATCCATCATTCAATCGAAAA+GGG 0.514565 2_4:-48304906 Msa0332000:five_prime_UTR
ACGACCACATGCTATTTCCC+CGG 0.515781 2_4:+48301634 None:intergenic
ATCGATGCTTACGCTGGAGA+AGG 0.517287 2_4:-48303194 Msa0332000:CDS
GTCACAGTCGAGAGAAGATT+AGG 0.517689 2_4:-48302968 Msa0332000:intron
TTCTACATCACAACATGTGC+AGG 0.518102 2_4:-48300195 Msa0332000:CDS
CATGGCACTTAAAATGAGAA+AGG 0.518506 2_4:-48300465 Msa0332000:intron
TCCATTTAAAGACCACATGC+TGG 0.518896 2_4:+48301727 None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG 0.519329 2_4:+48302881 None:intergenic
GGTCGTTAGAATAATATTCA+AGG 0.522036 2_4:+48301675 None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG 0.525646 2_4:-48302958 Msa0332000:CDS
ACGTAAATAGATTAATATGC+GGG 0.526006 2_4:-48303693 Msa0332000:exon
AAGGAGGATCAAGACATCTC+TGG 0.528780 2_4:+48302610 None:intergenic
ACATAGATTCTGATGAATCC+GGG 0.537290 2_4:-48301652 Msa0332000:CDS
ACATACCTAGTATCAACATT+GGG 0.539661 2_4:-48304955 Msa0332000:five_prime_UTR
AAAGGAACATGTCAAGTTGA+AGG 0.541741 2_4:-48303624 Msa0332000:CDS
GGTTCTGTCATTGCTACAGA+TGG 0.542741 2_4:-48302837 Msa0332000:CDS
ACCTGCCAAGTACTGTCTAA+GGG 0.543897 2_4:+48302383 None:intergenic
AACCTTATCGATGCTTACGC+TGG 0.549016 2_4:-48303200 Msa0332000:CDS
CACATACCTAGTATCAACAT+TGG 0.553170 2_4:-48304956 Msa0332000:five_prime_UTR
AATACTTGCAAAACCAGCCT+TGG 0.554312 2_4:+48302462 None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG 0.555448 2_4:-48303190 Msa0332000:CDS
TATTCCTTGTTCTTCTCTGG+AGG 0.556906 2_4:+48303249 None:intergenic
TGGAGTTCAAAATTGCAGAT+CGG 0.560560 2_4:-48299140 Msa0332000:CDS
GAATGTTCTATGTTAGATGA+AGG 0.561374 2_4:-48301704 Msa0332000:CDS
GAGAAGAGAAAAGGAGTCTG+AGG 0.568921 2_4:-48301034 Msa0332000:CDS
TCTTCACTCACTTGTTCACA+AGG 0.570005 2_4:+48301084 None:intergenic
GAAAATTATGATTCATGTGG+TGG 0.575125 2_4:-48298874 Msa0332000:three_prime_UTR
AACATCATCACTGACCTCCA+TGG 0.580335 2_4:+48299300 None:intergenic
TGACTATAATCCAGAGAGGA+AGG 0.581091 2_4:-48301819 Msa0332000:CDS
GGGAAATAGCATGTGGTCGT+AGG 0.581992 2_4:-48301631 Msa0332000:CDS
AGGAAAGGTGAGATAGATGT+TGG 0.583618 2_4:-48303359 Msa0332000:CDS
ACAACATGTGCAGGAAGAAG+AGG 0.585587 2_4:-48300186 Msa0332000:CDS
AATGGGACTTGATGCTGCAA+AGG 0.589378 2_4:-48300688 Msa0332000:intron
AATGATATTATACTCTGTGA+TGG 0.590683 2_4:-48302654 Msa0332000:CDS
GATAGATGTTGGTGATCAAG+AGG 0.591239 2_4:-48303348 Msa0332000:CDS
TTTGTTTAGCTTCAAGAAGG+AGG 0.591319 2_4:-48300257 Msa0332000:intron
CAAGTAGCACAAAACACCAA+AGG 0.591492 2_4:-48303580 Msa0332000:CDS
TCTCTTAATCATGATAGGAA+AGG 0.591668 2_4:-48303374 Msa0332000:CDS
CAAGTAGTTCTTCCAGCATG+TGG 0.596343 2_4:-48301739 Msa0332000:CDS
TTCCAATAAGGTGCCAACCA+AGG 0.598203 2_4:-48303480 Msa0332000:CDS
CTGTAAGATAGAAATATTGG+AGG 0.603472 2_4:-48302435 Msa0332000:CDS
CCAGTTGGTGAATGGCATCA+CGG 0.605629 2_4:+48302889 None:intergenic
AAATCAAAATCTCATAAACT+CGG 0.606698 2_4:-48303542 Msa0332000:CDS
TACGCTGGAGAAGGTTGGAA+AGG 0.611602 2_4:-48303185 Msa0332000:CDS
CATGGTGGCATCAACACAGA+AGG 0.612139 2_4:-48301788 Msa0332000:CDS
GAAGAAGCTGCTATTCCTGA+CGG 0.614571 2_4:-48301899 Msa0332000:CDS
TATCACTTCTAAGAACTCAA+AGG 0.617285 2_4:-48300219 Msa0332000:CDS
CGGAGGTTGCACAAATGTGT+CGG 0.617900 2_4:-48303522 Msa0332000:CDS
CTGAACTAAGAGAATCCAGT+TGG 0.618760 2_4:+48302874 None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG 0.618854 2_4:+48302594 None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG 0.619248 2_4:+48302591 None:intergenic
CGGATTCATCAGAATCTATG+TGG 0.622262 2_4:+48301654 None:intergenic
AGGAATTCAACAAAGATACA+AGG 0.629477 2_4:-48303407 Msa0332000:CDS
CCTGCCAAGTACTGTCTAAG+GGG 0.632462 2_4:+48302384 None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG 0.637015 2_4:-48301806 Msa0332000:CDS
ACTGAGAAGTTAAATAACCA+AGG 0.637280 2_4:-48303668 Msa0332000:CDS
CTTGGGAGAAAATGGCAACA+AGG 0.637413 2_4:-48300033 Msa0332000:intron
TCATGTGAAAACCTAAAACA+AGG 0.637563 2_4:+48300913 None:intergenic
TCGTCTTCAGGATCATCTGA+CGG 0.640667 2_4:+48301842 None:intergenic
TACGTAAATAGATTAATATG+CGG 0.644745 2_4:-48303694 Msa0332000:exon
CCAGAAATACCTCCACACTT+GGG 0.646657 2_4:-48300050 Msa0332000:CDS
GAGAAGGTTGGAAAGGTCAG+AGG 0.649501 2_4:-48303178 Msa0332000:intron
AGGAAGGAAGAAAGCCATGG+TGG 0.650653 2_4:-48301803 Msa0332000:CDS
GTGAGTGAAGATGAAGATTG+GGG 0.652036 2_4:-48301072 Msa0332000:CDS
AACCAGCCTTGGTCTTCAGG+AGG 0.652976 2_4:+48302473 None:intergenic
CATAGATTCTGATGAATCCG+GGG 0.669012 2_4:-48301651 Msa0332000:CDS
TACAAAACCGAGTAACACAA+AGG 0.669844 2_4:-48303642 Msa0332000:CDS
GCTTCCTCCAAAATCCGTGA+AGG 0.670380 2_4:-48300727 Msa0332000:CDS
GCAGTTCCTCCTGAAGACCA+AGG 0.671156 2_4:-48302479 Msa0332000:intron
TCACTCACTTGTTCACAAGG+TGG 0.675741 2_4:+48301087 None:intergenic
TGCATTTGAAGGAGACTCCG+AGG 0.681549 2_4:-48299233 Msa0332000:CDS
TCAAAATCTCATAAACTCGG+AGG 0.684427 2_4:-48303539 Msa0332000:CDS
ATGGAAAATTATGATTCATG+TGG 0.684751 2_4:-48298877 Msa0332000:three_prime_UTR
TTATCTTCAGGATTCCATGG+AGG 0.700522 2_4:-48299314 Msa0332000:intron
GAATCCGGGGAAATAGCATG+TGG 0.711313 2_4:-48301638 Msa0332000:CDS
AATTCAACAAAGATACAAGG+AGG 0.723347 2_4:-48303404 Msa0332000:CDS
ACGATGACTATAATCCAGAG+AGG 0.733914 2_4:-48301823 Msa0332000:CDS
TACGCCTCCAGAGAAGAACA+AGG 0.736747 2_4:-48303253 Msa0332000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGATTTAAAACAAA+AGG + chr2_4:48299293-48299312 None:intergenic 10.0%
!! TTTGTAAAAAAAAATTTACA+CGG - chr2_4:48301742-48301761 Msa0332000:CDS 10.0%
!!! GAAAAAACATTTATTATTTT+TGG + chr2_4:48302000-48302019 None:intergenic 10.0%
!! ATAAATGATCATATAAATAA+AGG - chr2_4:48302484-48302503 Msa0332000:intron 10.0%
!!! TCTTTGTATGATTTTATATA+TGG - chr2_4:48299844-48299863 Msa0332000:intron 15.0%
!! CTGTATATAATCATTAAAAA+TGG - chr2_4:48300007-48300026 Msa0332000:intron 15.0%
!!! TATCTTATTATTTTCTAACA+TGG - chr2_4:48300063-48300082 Msa0332000:CDS 15.0%
!! GTTAGATCATTAAAAATATT+AGG + chr2_4:48301853-48301872 None:intergenic 15.0%
!!! TTTTATAATTTATCTTGAAG+AGG - chr2_4:48302659-48302678 Msa0332000:CDS 15.0%
!!! TTTAAATATTTGTTTTCAGT+TGG + chr2_4:48303125-48303144 None:intergenic 15.0%
!! CACTAATAAAAGAAAAAAAA+AGG + chr2_4:48303533-48303552 None:intergenic 15.0%
!! AATTAAACAATTCTTACAAA+AGG + chr2_4:48303557-48303576 None:intergenic 15.0%
!!! TAGTTTTAAATCCTATAATA+AGG - chr2_4:48303593-48303612 Msa0332000:CDS 15.0%
!!! TTAATAAATTGTTTTGTTCT+TGG - chr2_4:48303635-48303654 Msa0332000:CDS 15.0%
!!! CTTTTTTTTTTACATTTAAC+AGG + chr2_4:48304399-48304418 None:intergenic 15.0%
!! ACTAAATAAAAAACAGTTAT+TGG + chr2_4:48304498-48304517 None:intergenic 15.0%
!! TACGTAAATAGATTAATATG+CGG - chr2_4:48300251-48300270 Msa0332000:CDS 20.0%
!! AAATCAAAATCTCATAAACT+CGG - chr2_4:48300403-48300422 Msa0332000:intron 20.0%
!! TAATAACTAACAATTCAAGA+AGG + chr2_4:48300891-48300910 None:intergenic 20.0%
!!! GTTTTTTCTGTCAAAAATTA+AGG - chr2_4:48302012-48302031 Msa0332000:intron 20.0%
!! AAAAATTAAGGATGTATTCA+AGG - chr2_4:48302024-48302043 Msa0332000:intron 20.0%
!!! ATAAAGGTACTATTTAAAAC+AGG - chr2_4:48302500-48302519 Msa0332000:intron 20.0%
!!! TTTGTTTTATCTGTTGTTAT+AGG + chr2_4:48302585-48302604 None:intergenic 20.0%
!!! TTATGAAAATAAGTTGAAAC+CGG - chr2_4:48302682-48302701 Msa0332000:CDS 20.0%
!! CTATCATTGTTCTTATTATT+CGG + chr2_4:48302981-48303000 None:intergenic 20.0%
!! AAGAACAATGATAGAATAAA+AGG - chr2_4:48302987-48303006 Msa0332000:intron 20.0%
!! AGAACAATGATAGAATAAAA+GGG - chr2_4:48302988-48303007 Msa0332000:intron 20.0%
!! GGTAATAATACATTAATGTA+TGG - chr2_4:48304953-48304972 Msa0332000:five_prime_UTR 20.0%
!! GAAAATTTATAACTTCAAAC+CGG + chr2_4:48305011-48305030 None:intergenic 20.0%
!!! CATATTTTCATTTTGTTCTA+TGG - chr2_4:48305049-48305068 Msa0332000:five_prime_UTR 20.0%
! ATGGATAGGAAATTGAAATT+GGG + chr2_4:48299025-48299044 None:intergenic 25.0%
! CTGAAATTGAAGAGAAAATA+TGG + chr2_4:48299164-48299183 None:intergenic 25.0%
!! CATATTTTCTCTTCAATTTC+AGG - chr2_4:48299162-48299181 Msa0332000:CDS 25.0%
!!! TTGTTTTGGATTTTTACTTG+TGG - chr2_4:48299226-48299245 Msa0332000:CDS 25.0%
!!! TGTTTTGGATTTTTACTTGT+GGG - chr2_4:48299227-48299246 Msa0332000:CDS 25.0%
! ATAAAACGAAAACGAATGAA+TGG + chr2_4:48299926-48299945 None:intergenic 25.0%
!! ATAAGTAGTTCTTTGACTTA+TGG + chr2_4:48300091-48300110 None:intergenic 25.0%
! TTACTATTATGACTGTATCA+GGG - chr2_4:48300224-48300243 Msa0332000:CDS 25.0%
! ACGTAAATAGATTAATATGC+GGG - chr2_4:48300252-48300271 Msa0332000:intron 25.0%
!!! TCTTTTATTTGAAGAATCCT+TGG + chr2_4:48300485-48300504 None:intergenic 25.0%
! AAAGTCTACATAAAACTGAT+AGG - chr2_4:48300518-48300537 Msa0332000:intron 25.0%
! AAACTTCTCTTAATCATGAT+AGG - chr2_4:48300566-48300585 Msa0332000:intron 25.0%
!! ATCTCATTCTATGGATTAAA+AGG + chr2_4:48300860-48300879 None:intergenic 25.0%
! AAAAATGTTTCAACACAATG+AGG + chr2_4:48301208-48301227 None:intergenic 25.0%
! CAGAGTATAATATCATTATC+TGG + chr2_4:48301288-48301307 None:intergenic 25.0%
! AATGATATTATACTCTGTGA+TGG - chr2_4:48301291-48301310 Msa0332000:intron 25.0%
! TGACTGTAAGATAGAAATAT+TGG - chr2_4:48301507-48301526 Msa0332000:intron 25.0%
! CTTAAAAGTCATGCAAATAA+TGG + chr2_4:48301666-48301685 None:intergenic 25.0%
!!! ATTTGCATGACTTTTAAGTT+AGG - chr2_4:48301668-48301687 Msa0332000:CDS 25.0%
! ATCAGTTAATCATAAACTGT+TGG + chr2_4:48301722-48301741 None:intergenic 25.0%
! GAAGTAAAAATCTGAAGATT+TGG + chr2_4:48301819-48301838 None:intergenic 25.0%
!! AGATTTTTACTTCCTTCTAT+TGG - chr2_4:48301826-48301845 Msa0332000:CDS 25.0%
! AAAATATTAGGACCAATAGA+AGG + chr2_4:48301841-48301860 None:intergenic 25.0%
! GAAGTGAAAATCAAAATACT+TGG + chr2_4:48301966-48301985 None:intergenic 25.0%
!!! ATTATTTTTGGACCAATAGA+AGG + chr2_4:48301988-48302007 None:intergenic 25.0%
! TACTAAATCAAGAAGAAGAA+TGG - chr2_4:48302080-48302099 Msa0332000:intron 25.0%
! TCAAATAAGTTAATCCAAAC+CGG - chr2_4:48302781-48302800 Msa0332000:intron 25.0%
!!! ATTTAAGTTCCTATCTTTTC+AGG - chr2_4:48302815-48302834 Msa0332000:intron 25.0%
! TTATCGAACATGTTAATAAC+AGG + chr2_4:48303426-48303445 None:intergenic 25.0%
!! ACAGTAATTTTTGCAATCTT+CGG + chr2_4:48303793-48303812 None:intergenic 25.0%
!! CATTTCAATGTTTTATCTTC+AGG - chr2_4:48304619-48304638 Msa0332000:intron 25.0%
! TAATGAAACTATTGCAAGAA+AGG - chr2_4:48304672-48304691 Msa0332000:intron 25.0%
! ATAGGAACATACATAATAGA+TGG + chr2_4:48304857-48304876 None:intergenic 25.0%
! ATGGAAAATTATGATTCATG+TGG - chr2_4:48305068-48305087 Msa0332000:five_prime_UTR 25.0%
ACATACCTAGTATCAACATT+GGG - chr2_4:48298990-48299009 Msa0332000:three_prime_UTR 30.0%
GATGGATAGGAAATTGAAAT+TGG + chr2_4:48299026-48299045 None:intergenic 30.0%
!!! TTTTCGATTGAATGATGGAT+AGG + chr2_4:48299039-48299058 None:intergenic 30.0%
TATCCATCATTCAATCGAAA+AGG - chr2_4:48299038-48299057 Msa0332000:three_prime_UTR 30.0%
ATCCATCATTCAATCGAAAA+GGG - chr2_4:48299039-48299058 Msa0332000:three_prime_UTR 30.0%
!!! TCAGGTTAGTTTTGTTTCAT+TGG - chr2_4:48299180-48299199 Msa0332000:CDS 30.0%
!! GTTTTGGATTTTTACTTGTG+GGG - chr2_4:48299228-48299247 Msa0332000:CDS 30.0%
ATTCATCATTCATGTGCAAA+AGG + chr2_4:48299270-48299289 None:intergenic 30.0%
CAATCAATTCAAGCAAATCA+TGG + chr2_4:48299487-48299506 None:intergenic 30.0%
CTCATATTGTGATGTTTACT+TGG - chr2_4:48299511-48299530 Msa0332000:intron 30.0%
!!! TACTTGGTGATGTTACATTT+TGG - chr2_4:48299527-48299546 Msa0332000:intron 30.0%
! ATTTTACGCAGAATTGAGAA+GGG - chr2_4:48299681-48299700 Msa0332000:intron 30.0%
ACAAAGATGAGAGAGTTAAT+AGG + chr2_4:48299831-48299850 None:intergenic 30.0%
!! AGGACTTGATGATGTAATTT+CGG - chr2_4:48299984-48300003 Msa0332000:intron 30.0%
CTTACTATTATGACTGTATC+AGG - chr2_4:48300223-48300242 Msa0332000:CDS 30.0%
ACTGAGAAGTTAAATAACCA+AGG - chr2_4:48300277-48300296 Msa0332000:intron 30.0%
TTATTTGAAGAATCCTTGGT+TGG + chr2_4:48300481-48300500 None:intergenic 30.0%
AGGAATTCAACAAAGATACA+AGG - chr2_4:48300538-48300557 Msa0332000:intron 30.0%
AATTCAACAAAGATACAAGG+AGG - chr2_4:48300541-48300560 Msa0332000:intron 30.0%
TCTCTTAATCATGATAGGAA+AGG - chr2_4:48300571-48300590 Msa0332000:intron 30.0%
ACATTCAAAAACGTAAGAGA+AGG - chr2_4:48300623-48300642 Msa0332000:intron 30.0%
CTCATAAAAATAGCGATACA+GGG + chr2_4:48301182-48301201 None:intergenic 30.0%
TCTCATAAAAATAGCGATAC+AGG + chr2_4:48301183-48301202 None:intergenic 30.0%
AATTTGCACAGAATATCTAG+AGG + chr2_4:48301245-48301264 None:intergenic 30.0%
GTTCAATCTTTAATGTGACA+CGG - chr2_4:48301405-48301424 Msa0332000:intron 30.0%
CTGTAAGATAGAAATATTGG+AGG - chr2_4:48301510-48301529 Msa0332000:intron 30.0%
TTTGGTTGTGCATGAAAAAA+GGG + chr2_4:48301801-48301820 None:intergenic 30.0%
ATTTGGTTGTGCATGAAAAA+AGG + chr2_4:48301802-48301821 None:intergenic 30.0%
! TGATTTTCACTTCCTTCTAT+TGG - chr2_4:48301973-48301992 Msa0332000:intron 30.0%
GAATGTTCTATGTTAGATGA+AGG - chr2_4:48302241-48302260 Msa0332000:intron 30.0%
GGTCGTTAGAATAATATTCA+AGG + chr2_4:48302273-48302292 None:intergenic 30.0%
TGAAATCTTTAGCAGTCATA+CGG - chr2_4:48302424-48302443 Msa0332000:CDS 30.0%
AAGTACTTGTGATACTGTTT+GGG + chr2_4:48302745-48302764 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG + chr2_4:48302746-48302765 None:intergenic 30.0%
TAGGAACTTAAATGAAACCT+TGG + chr2_4:48302808-48302827 None:intergenic 30.0%
CAAACATTTCCTGAAAAGAT+AGG + chr2_4:48302827-48302846 None:intergenic 30.0%
!! CTATCTTTTCAGGAAATGTT+TGG - chr2_4:48302825-48302844 Msa0332000:CDS 30.0%
!! TTTTCAGGAAATGTTTGGAA+AGG - chr2_4:48302830-48302849 Msa0332000:CDS 30.0%
AGAATAAAAGGGAATTCTTC+AGG - chr2_4:48302999-48303018 Msa0332000:intron 30.0%
!!! GCATAAAAAGACCTTGTTTT+AGG - chr2_4:48303021-48303040 Msa0332000:intron 30.0%
TCATGTGAAAACCTAAAACA+AGG + chr2_4:48303035-48303054 None:intergenic 30.0%
GAGATGGATGCAAATTTATA+GGG + chr2_4:48303336-48303355 None:intergenic 30.0%
!! GAGTTATTTGCATTGCTTTT+TGG - chr2_4:48303360-48303379 Msa0332000:CDS 30.0%
CATGTTAATAACAGGAAGTT+TGG + chr2_4:48303418-48303437 None:intergenic 30.0%
ATTAACATGTTCGATAATGC+AGG - chr2_4:48303429-48303448 Msa0332000:CDS 30.0%
CAATAAACTTTGACACAAGT+GGG - chr2_4:48303664-48303683 Msa0332000:CDS 30.0%
! TATCACTTCTAAGAACTCAA+AGG - chr2_4:48303726-48303745 Msa0332000:intron 30.0%
! CAGTAATTTTTGCAATCTTC+GGG + chr2_4:48303792-48303811 None:intergenic 30.0%
GAAGATTGCAAAAATTACTG+TGG - chr2_4:48303792-48303811 Msa0332000:intron 30.0%
! ACATTTTCACACTTCTTCAA+GGG + chr2_4:48303823-48303842 None:intergenic 30.0%
! AACATTTTCACACTTCTTCA+AGG + chr2_4:48303824-48303843 None:intergenic 30.0%
! AAGAAGTGTGAAAATGTTAC+TGG - chr2_4:48303826-48303845 Msa0332000:intron 30.0%
!! TGTCGGTTTGACAAAAATAA+AGG - chr2_4:48304159-48304178 Msa0332000:intron 30.0%
CCACGAAAACTTAAGTTATT+AGG + chr2_4:48304586-48304605 None:intergenic 30.0%
! CCTAATAACTTAAGTTTTCG+TGG - chr2_4:48304583-48304602 Msa0332000:intron 30.0%
ATTGCAAGAAAGGAAAAAGA+AGG - chr2_4:48304682-48304701 Msa0332000:intron 30.0%
! AAGGTAAGTTTTGCATTTGA+AGG - chr2_4:48304701-48304720 Msa0332000:intron 30.0%
AGATTGAAGCAAAGATTAAC+TGG - chr2_4:48304785-48304804 Msa0332000:five_prime_UTR 30.0%
! TTAAAACATTTTTGCACAGC+AGG - chr2_4:48304931-48304950 Msa0332000:five_prime_UTR 30.0%
! TAAAACATTTTTGCACAGCA+GGG - chr2_4:48304932-48304951 Msa0332000:five_prime_UTR 30.0%
GAAAATTATGATTCATGTGG+TGG - chr2_4:48305071-48305090 Msa0332000:five_prime_UTR 30.0%
!! CTTTAAGGTTCTTGTTGTGT+TGG + chr2_4:48298940-48298959 None:intergenic 35.0%
! TCGAAGCATCACAATCTTTA+AGG + chr2_4:48298955-48298974 None:intergenic 35.0%
CACATACCTAGTATCAACAT+TGG - chr2_4:48298989-48299008 Msa0332000:three_prime_UTR 35.0%
AGATTCCCAATGTTGATACT+AGG + chr2_4:48298998-48299017 None:intergenic 35.0%
! AACCCTTTTCGATTGAATGA+TGG + chr2_4:48299044-48299063 None:intergenic 35.0%
!! TCATTGGTGTTAAGTTCATG+TGG - chr2_4:48299196-48299215 Msa0332000:CDS 35.0%
!! CATTGGTGTTAAGTTCATGT+GGG - chr2_4:48299197-48299216 Msa0332000:CDS 35.0%
! GATTTTACGCAGAATTGAGA+AGG - chr2_4:48299680-48299699 Msa0332000:intron 35.0%
! TCATGCAATTTTGCCATTGT+TGG - chr2_4:48299890-48299909 Msa0332000:intron 35.0%
TGGAAAATGCTATCCAACAA+TGG + chr2_4:48299906-48299925 None:intergenic 35.0%
AAGAACAGACTTAGACTTAC+AGG - chr2_4:48299964-48299983 Msa0332000:intron 35.0%
TACAATATGTGTTTCTCCGT+TGG - chr2_4:48300178-48300197 Msa0332000:CDS 35.0%
GTCAAGATGAATTCTTCCAA+CGG + chr2_4:48300197-48300216 None:intergenic 35.0%
TACAAAACCGAGTAACACAA+AGG - chr2_4:48300303-48300322 Msa0332000:intron 35.0%
! ACATGTTCCTTTGTGTTACT+CGG + chr2_4:48300313-48300332 None:intergenic 35.0%
!! AAAGGAACATGTCAAGTTGA+AGG - chr2_4:48300321-48300340 Msa0332000:intron 35.0%
!!! TGTGCTACTTGTTTTGAACT+GGG + chr2_4:48300356-48300375 None:intergenic 35.0%
!!! TTGTGCTACTTGTTTTGAAC+TGG + chr2_4:48300357-48300376 None:intergenic 35.0%
TCAAAATCTCATAAACTCGG+AGG - chr2_4:48300406-48300425 Msa0332000:intron 35.0%
!! AGCTACTGATTCTTCCAATA+AGG - chr2_4:48300453-48300472 Msa0332000:intron 35.0%
AGATATTCCTTGTTCTTCTC+TGG + chr2_4:48300702-48300721 None:intergenic 35.0%
!! AGTTCAGTTGGTAGTATTGA+AGG - chr2_4:48301087-48301106 Msa0332000:CDS 35.0%
CACATAGATTCTGATGAATC+CGG - chr2_4:48302292-48302311 Msa0332000:intron 35.0%
ACATAGATTCTGATGAATCC+GGG - chr2_4:48302293-48302312 Msa0332000:intron 35.0%
TAAGTGCCTATTAGCATAAG+CGG - chr2_4:48302528-48302547 Msa0332000:intron 35.0%
TGATAACCGCTTATGCTAAT+AGG + chr2_4:48302537-48302556 None:intergenic 35.0%
! AATAAGTTGAAACCGGCTTA+TGG - chr2_4:48302689-48302708 Msa0332000:CDS 35.0%
! ATAAGTTGAAACCGGCTTAT+GGG - chr2_4:48302690-48302709 Msa0332000:CDS 35.0%
ACTTAAATGAAACCTTGGTC+CGG + chr2_4:48302803-48302822 None:intergenic 35.0%
AAGTGAGTGAAGATGAAGAT+TGG - chr2_4:48302871-48302890 Msa0332000:CDS 35.0%
AGTGAGTGAAGATGAAGATT+GGG - chr2_4:48302872-48302891 Msa0332000:CDS 35.0%
AAAAAGACGGAGAAGAGAAA+AGG - chr2_4:48302902-48302921 Msa0332000:CDS 35.0%
! TTTTCAGTTGGAACTTTGAG+AGG + chr2_4:48303113-48303132 None:intergenic 35.0%
GCTTCTGGCAAATTTCATAA+TGG + chr2_4:48303173-48303192 None:intergenic 35.0%
AAGTCCCATTTCTTTCGAAA+GGG + chr2_4:48303247-48303266 None:intergenic 35.0%
GGAGATGGATGCAAATTTAT+AGG + chr2_4:48303337-48303356 None:intergenic 35.0%
AAGCAATGCAAATAACTCTG+CGG + chr2_4:48303358-48303377 None:intergenic 35.0%
CGATAATGCAGGTTAACAAA+TGG - chr2_4:48303440-48303459 Msa0332000:CDS 35.0%
GTTCAAAAATGCACGTTACA+TGG - chr2_4:48303462-48303481 Msa0332000:CDS 35.0%
CATGGCACTTAAAATGAGAA+AGG - chr2_4:48303480-48303499 Msa0332000:CDS 35.0%
! ATGATCAGACGCCTTATTAT+AGG + chr2_4:48303607-48303626 None:intergenic 35.0%
GCAATAAACTTTGACACAAG+TGG - chr2_4:48303663-48303682 Msa0332000:CDS 35.0%
!!! GGTTTTGTTTAGCTTCAAGA+AGG - chr2_4:48303685-48303704 Msa0332000:exon 35.0%
! TTTGTTTAGCTTCAAGAAGG+AGG - chr2_4:48303688-48303707 Msa0332000:exon 35.0%
AATGCACGGAATATGACATT+TGG + chr2_4:48303953-48303972 None:intergenic 35.0%
TTCTCAAGCACAAAAATGCA+CGG + chr2_4:48303967-48303986 None:intergenic 35.0%
! GTTCATGCAGTTGATATTTG+AGG - chr2_4:48304013-48304032 Msa0332000:intron 35.0%
! AATTTTACGATACCAGTCCA+TGG + chr2_4:48304086-48304105 None:intergenic 35.0%
GACTGGTATCGTAAAATTGT+TGG - chr2_4:48304088-48304107 Msa0332000:intron 35.0%
AGATGTAACATGATCTGTGT+CGG - chr2_4:48304142-48304161 Msa0332000:intron 35.0%
GACTAGATCATTGTCAAGTT+TGG + chr2_4:48304238-48304257 None:intergenic 35.0%
GACTGTAACTTCTACTTTCA+AGG - chr2_4:48304284-48304303 Msa0332000:intron 35.0%
! GTTTTATCTTCAGGATTCCA+TGG - chr2_4:48304628-48304647 Msa0332000:intron 35.0%
TGGAGTTCAAAATTGCAGAT+CGG - chr2_4:48304805-48304824 Msa0332000:five_prime_UTR 35.0%
ATGTTCCTATAGCTGAGTTA+AGG - chr2_4:48304867-48304886 Msa0332000:five_prime_UTR 35.0%
TGTTCCTATAGCTGAGTTAA+GGG - chr2_4:48304868-48304887 Msa0332000:five_prime_UTR 35.0%
! TTTTCCCTTAACTCAGCTAT+AGG + chr2_4:48304875-48304894 None:intergenic 35.0%
TATAGCTGAGTTAAGGGAAA+AGG - chr2_4:48304874-48304893 Msa0332000:five_prime_UTR 35.0%
GTACAATGAAATGAAGCAAC+CGG - chr2_4:48304989-48305008 Msa0332000:five_prime_UTR 35.0%
!!! CATGTGGGTTTGTCTTGTTT+TGG - chr2_4:48299212-48299231 Msa0332000:CDS 40.0%
TGTGGGGCTTAATAAAGTCA+AGG - chr2_4:48299244-48299263 Msa0332000:CDS 40.0%
AATCTCGATTGTAACCACCT+TGG + chr2_4:48299664-48299683 None:intergenic 40.0%
!! TACTCGGTTTTGTAGATCCT+TGG + chr2_4:48300297-48300316 None:intergenic 40.0%
!!! TGCTACTTGTTTTGAACTGG+GGG + chr2_4:48300354-48300373 None:intergenic 40.0%
!!! GTGCTACTTGTTTTGAACTG+GGG + chr2_4:48300355-48300374 None:intergenic 40.0%
CAAGTAGCACAAAACACCAA+AGG - chr2_4:48300365-48300384 Msa0332000:intron 40.0%
TCAGTCTGTCTTTCTTCCTT+TGG + chr2_4:48300384-48300403 None:intergenic 40.0%
AGGAAAGGTGAGATAGATGT+TGG - chr2_4:48300586-48300605 Msa0332000:intron 40.0%
!! GATAGATGTTGGTGATCAAG+AGG - chr2_4:48300597-48300616 Msa0332000:intron 40.0%
TATTCCTTGTTCTTCTCTGG+AGG + chr2_4:48300699-48300718 None:intergenic 40.0%
GAAATGCGCATCTCATTCTA+TGG + chr2_4:48300869-48300888 None:intergenic 40.0%
AGAGAAGATTAGGCCAGAAA+AGG - chr2_4:48300987-48301006 Msa0332000:CDS 40.0%
!! AAGAGAATCCAGTTGGTGAA+TGG + chr2_4:48301067-48301086 None:intergenic 40.0%
CTGAACTAAGAGAATCCAGT+TGG + chr2_4:48301074-48301093 None:intergenic 40.0%
CTGGATTCTCTTAGTTCAGT+TGG - chr2_4:48301075-48301094 Msa0332000:CDS 40.0%
GCACAGAATATCTAGAGGAT+GGG + chr2_4:48301240-48301259 None:intergenic 40.0%
TGCACAGAATATCTAGAGGA+TGG + chr2_4:48301241-48301260 None:intergenic 40.0%
AATACTTGCAAAACCAGCCT+TGG + chr2_4:48301486-48301505 None:intergenic 40.0%
ATTTCCCCTTAGACAGTACT+TGG - chr2_4:48301557-48301576 Msa0332000:intron 40.0%
GATATACACTGACAGTGTAG+AGG + chr2_4:48301904-48301923 None:intergenic 40.0%
CTTGGTTGTGTAAGAGACAA+GGG + chr2_4:48301948-48301967 None:intergenic 40.0%
ACTTGGTTGTGTAAGAGACA+AGG + chr2_4:48301949-48301968 None:intergenic 40.0%
GGATTATAGTCATCGTCTTC+AGG + chr2_4:48302118-48302137 None:intergenic 40.0%
ACGATGACTATAATCCAGAG+AGG - chr2_4:48302122-48302141 Msa0332000:intron 40.0%
TGACTATAATCCAGAGAGGA+AGG - chr2_4:48302126-48302145 Msa0332000:intron 40.0%
TCCAGCATGTGGTCTTTAAA+TGG - chr2_4:48302217-48302236 Msa0332000:intron 40.0%
TCCATTTAAAGACCACATGC+TGG + chr2_4:48302221-48302240 None:intergenic 40.0%
CGGATTCATCAGAATCTATG+TGG + chr2_4:48302294-48302313 None:intergenic 40.0%
CATAGATTCTGATGAATCCG+GGG - chr2_4:48302294-48302313 Msa0332000:intron 40.0%
TTATGACATGTCCCATAAGC+CGG + chr2_4:48302704-48302723 None:intergenic 40.0%
GTGAGTGAAGATGAAGATTG+GGG - chr2_4:48302873-48302892 Msa0332000:CDS 40.0%
! GTTTTCACATGATGCAGTTG+AGG - chr2_4:48303043-48303062 Msa0332000:intron 40.0%
GCTCATTCTCTGCAAAAACT+TGG + chr2_4:48303200-48303219 None:intergenic 40.0%
CAAGTCCCATTTCTTTCGAA+AGG + chr2_4:48303248-48303267 None:intergenic 40.0%
! AAATCTGACTCGAGACTCTA+AGG + chr2_4:48303288-48303307 None:intergenic 40.0%
TTCTACATCACAACATGTGC+AGG - chr2_4:48303750-48303769 Msa0332000:intron 40.0%
!!! TCTGGTCGCTTTTTCTTCAA+AGG + chr2_4:48303880-48303899 None:intergenic 40.0%
! CATGCAGTTGATATTTGAGG+TGG - chr2_4:48304016-48304035 Msa0332000:intron 40.0%
ATGGTAAACCACCTATCAAG+GGG + chr2_4:48304067-48304086 None:intergenic 40.0%
CATGGTAAACCACCTATCAA+GGG + chr2_4:48304068-48304087 None:intergenic 40.0%
TCTCAGACGTTACAGCAAAA+AGG - chr2_4:48304262-48304281 Msa0332000:intron 40.0%
AACAATTTAGTCCACCTCTC+AGG + chr2_4:48304373-48304392 None:intergenic 40.0%
CCGAAAGGCTAAACTATTAG+GGG + chr2_4:48304433-48304452 None:intergenic 40.0%
! CCCCTAATAGTTTAGCCTTT+CGG - chr2_4:48304430-48304449 Msa0332000:intron 40.0%
CCCGAAAGGCTAAACTATTA+GGG + chr2_4:48304434-48304453 None:intergenic 40.0%
! CCCTAATAGTTTAGCCTTTC+GGG - chr2_4:48304431-48304450 Msa0332000:intron 40.0%
TCCCGAAAGGCTAAACTATT+AGG + chr2_4:48304435-48304454 None:intergenic 40.0%
TTATCTTCAGGATTCCATGG+AGG - chr2_4:48304631-48304650 Msa0332000:intron 40.0%
GGAGTTCAAAATTGCAGATC+GGG - chr2_4:48304806-48304825 Msa0332000:five_prime_UTR 40.0%
!!! GCTACTTGTTTTGAACTGGG+GGG + chr2_4:48300353-48300372 None:intergenic 45.0%
! TTCCAATAAGGTGCCAACCA+AGG - chr2_4:48300465-48300484 Msa0332000:intron 45.0%
ATCCTTGGTTGGCACCTTAT+TGG + chr2_4:48300470-48300489 None:intergenic 45.0%
AACCTTATCGATGCTTACGC+TGG - chr2_4:48300745-48300764 Msa0332000:CDS 45.0%
! TTGGAAAGGTCAGAGGTATG+AGG - chr2_4:48300774-48300793 Msa0332000:intron 45.0%
GTCACAGTCGAGAGAAGATT+AGG - chr2_4:48300977-48300996 Msa0332000:CDS 45.0%
GGTTCTGTCATTGCTACAGA+TGG - chr2_4:48301108-48301127 Msa0332000:CDS 45.0%
AAGGAGGATCAAGACATCTC+TGG + chr2_4:48301338-48301357 None:intergenic 45.0%
GAGATGTCTTGATCCTCCTT+TGG - chr2_4:48301338-48301357 Msa0332000:intron 45.0%
TCACTGTCTTCAGTCTCCAA+AGG + chr2_4:48301357-48301376 None:intergenic 45.0%
! ACCTGCCAAGTACTGTCTAA+GGG + chr2_4:48301565-48301584 None:intergenic 45.0%
! AACCTGCCAAGTACTGTCTA+AGG + chr2_4:48301566-48301585 None:intergenic 45.0%
GAAGAAGCTGCTATTCCTGA+CGG - chr2_4:48302046-48302065 Msa0332000:intron 45.0%
TCGTCTTCAGGATCATCTGA+CGG + chr2_4:48302106-48302125 None:intergenic 45.0%
CAAGTAGTTCTTCCAGCATG+TGG - chr2_4:48302206-48302225 Msa0332000:intron 45.0%
AGTTAATCCAAACCGGACCA+AGG - chr2_4:48302788-48302807 Msa0332000:intron 45.0%
AATGAAACCTTGGTCCGGTT+TGG + chr2_4:48302798-48302817 None:intergenic 45.0%
ATTGGGGTCCTGGAAAAAGA+CGG - chr2_4:48302889-48302908 Msa0332000:CDS 45.0%
! TCTCTTCTCCGTCTTTTTCC+AGG + chr2_4:48302900-48302919 None:intergenic 45.0%
GAGAAGAGAAAAGGAGTCTG+AGG - chr2_4:48302911-48302930 Msa0332000:CDS 45.0%
CAAAAACTTGGCGAAGCTTC+TGG + chr2_4:48303188-48303207 None:intergenic 45.0%
GACGCCCTTTCGAAAGAAAT+GGG - chr2_4:48303240-48303259 Msa0332000:CDS 45.0%
AATGGGACTTGATGCTGCAA+AGG - chr2_4:48303257-48303276 Msa0332000:CDS 45.0%
TGCAAATAACTCTGCGGAGA+TGG + chr2_4:48303352-48303371 None:intergenic 45.0%
ACAACATGTGCAGGAAGAAG+AGG - chr2_4:48303759-48303778 Msa0332000:intron 45.0%
ACCAGAAATACCTCCACACT+TGG - chr2_4:48303894-48303913 Msa0332000:intron 45.0%
CCAGAAATACCTCCACACTT+GGG - chr2_4:48303895-48303914 Msa0332000:intron 45.0%
!!! TTGCCATTTTCTCCCAAGTG+TGG + chr2_4:48303910-48303929 None:intergenic 45.0%
CTTGGGAGAAAATGGCAACA+AGG - chr2_4:48303912-48303931 Msa0332000:intron 45.0%
TGGTAAACCACCTATCAAGG+GGG + chr2_4:48304066-48304085 None:intergenic 45.0%
CCATGGTAAACCACCTATCA+AGG + chr2_4:48304069-48304088 None:intergenic 45.0%
CCTTGATAGGTGGTTTACCA+TGG - chr2_4:48304066-48304085 Msa0332000:intron 45.0%
ATAGGTGGTTTACCATGGAC+TGG - chr2_4:48304071-48304090 Msa0332000:intron 45.0%
TCTCAGCAGTGAAGAAAACG+AGG + chr2_4:48304125-48304144 None:intergenic 45.0%
ATGTCACGAATCATCCCGAA+AGG + chr2_4:48304448-48304467 None:intergenic 45.0%
TTTCGGGATGATTCGTGACA+TGG - chr2_4:48304447-48304466 Msa0332000:intron 45.0%
AACATCATCACTGACCTCCA+TGG + chr2_4:48304648-48304667 None:intergenic 45.0%
AAATTCCAACTCTGCTGCCT+CGG + chr2_4:48304732-48304751 None:intergenic 45.0%
CACGTGACTCAGAACACGTA+CGG + chr2_4:48299429-48299448 None:intergenic 50.0%
CGGAGGTTGCACAAATGTGT+CGG - chr2_4:48300423-48300442 Msa0332000:intron 50.0%
TACGCCTCCAGAGAAGAACA+AGG - chr2_4:48300692-48300711 Msa0332000:CDS 50.0%
!! CTCCAGCGTAAGCATCGATA+AGG + chr2_4:48300750-48300769 None:intergenic 50.0%
ATCGATGCTTACGCTGGAGA+AGG - chr2_4:48300751-48300770 Msa0332000:CDS 50.0%
ATGCTTACGCTGGAGAAGGT+TGG - chr2_4:48300755-48300774 Msa0332000:CDS 50.0%
TACGCTGGAGAAGGTTGGAA+AGG - chr2_4:48300760-48300779 Msa0332000:intron 50.0%
GAGAAGGTTGGAAAGGTCAG+AGG - chr2_4:48300767-48300786 Msa0332000:intron 50.0%
!! CCAGTTGGTGAATGGCATCA+CGG + chr2_4:48301059-48301078 None:intergenic 50.0%
CTGTCTTCAGTCTCCAAAGG+AGG + chr2_4:48301354-48301373 None:intergenic 50.0%
! CAAAACCAGCCTTGGTCTTC+AGG + chr2_4:48301478-48301497 None:intergenic 50.0%
AGGCAACAAACGCGCATCTT+GGG - chr2_4:48301530-48301549 Msa0332000:intron 50.0%
! CCTGCCAAGTACTGTCTAAG+GGG + chr2_4:48301564-48301583 None:intergenic 50.0%
TGGCTTTCTTCCTTCCTCTC+TGG + chr2_4:48302139-48302158 None:intergenic 50.0%
GAGAGGAAGGAAGAAAGCCA+TGG - chr2_4:48302139-48302158 Msa0332000:intron 50.0%
AGGAAGGAAGAAAGCCATGG+TGG - chr2_4:48302142-48302161 Msa0332000:intron 50.0%
! CTTCTGTGTTGATGCCACCA+TGG + chr2_4:48302159-48302178 None:intergenic 50.0%
CATGGTGGCATCAACACAGA+AGG - chr2_4:48302157-48302176 Msa0332000:intron 50.0%
GAATCCGGGGAAATAGCATG+TGG - chr2_4:48302307-48302326 Msa0332000:intron 50.0%
!! ACGACCACATGCTATTTCCC+CGG + chr2_4:48302314-48302333 None:intergenic 50.0%
GGGAAATAGCATGTGGTCGT+AGG - chr2_4:48302314-48302333 Msa0332000:intron 50.0%
GAAGATGAAGATTGGGGTCC+TGG - chr2_4:48302879-48302898 Msa0332000:CDS 50.0%
GCTTCCTCCAAAATCCGTGA+AGG - chr2_4:48303218-48303237 Msa0332000:CDS 50.0%
!! TTTCGAAAGGGCGTCCTTCA+CGG + chr2_4:48303235-48303254 None:intergenic 50.0%
GGACGCCCTTTCGAAAGAAA+TGG - chr2_4:48303239-48303258 Msa0332000:CDS 50.0%
!! CCCAAGTGTGGAGGTATTTC+TGG + chr2_4:48303898-48303917 None:intergenic 50.0%
! CCATTTTCTCCCAAGTGTGG+AGG + chr2_4:48303907-48303926 None:intergenic 50.0%
CCTCCACACTTGGGAGAAAA+TGG - chr2_4:48303904-48303923 Msa0332000:intron 50.0%
AGAAGATCTACCGTGGAGTG+TGG - chr2_4:48304039-48304058 Msa0332000:intron 50.0%
CTCTCAGGCAAGTTCTACAG+TGG + chr2_4:48304358-48304377 None:intergenic 50.0%
CACTGTAGAACTTGCCTGAG+AGG - chr2_4:48304356-48304375 Msa0332000:intron 50.0%
TGTAGAACTTGCCTGAGAGG+TGG - chr2_4:48304359-48304378 Msa0332000:intron 50.0%
TGCATTTGAAGGAGACTCCG+AGG - chr2_4:48304712-48304731 Msa0332000:intron 50.0%
GTCATCGTCACTCATCGCCA+AGG - chr2_4:48299644-48299663 Msa0332000:intron 55.0%
ATCGTCACTCATCGCCAAGG+TGG - chr2_4:48299647-48299666 Msa0332000:intron 55.0%
! GCTCGTTGCAGCTCCTTTTC+TGG + chr2_4:48301003-48301022 None:intergenic 55.0%
CCGTGATGCCATTCACCAAC+TGG - chr2_4:48301056-48301075 Msa0332000:CDS 55.0%
GCAGTTCCTCCTGAAGACCA+AGG - chr2_4:48301466-48301485 Msa0332000:intron 55.0%
TTCCTCCTGAAGACCAAGGC+TGG - chr2_4:48301470-48301489 Msa0332000:intron 55.0%
! AACCAGCCTTGGTCTTCAGG+AGG + chr2_4:48301475-48301494 None:intergenic 55.0%
GAGGCAACAAACGCGCATCT+TGG - chr2_4:48301529-48301548 Msa0332000:intron 55.0%
CCCCTTAGACAGTACTTGGC+AGG - chr2_4:48301561-48301580 Msa0332000:intron 55.0%
AGTAATGCAGCATCGCCGTC+AGG + chr2_4:48302064-48302083 None:intergenic 55.0%
! GCGTCCTTCACGGATTTTGG+AGG + chr2_4:48303225-48303244 None:intergenic 55.0%
!! AGGGCGTCCTTCACGGATTT+TGG + chr2_4:48303228-48303247 None:intergenic 55.0%
GAGGTGGAGAAGATCTACCG+TGG - chr2_4:48304032-48304051 Msa0332000:intron 55.0%
TCAAGGGGGTCCACACTCCA+CGG + chr2_4:48304052-48304071 None:intergenic 60.0%
GGAGTGTGGACCCCCTTGAT+AGG - chr2_4:48304053-48304072 Msa0332000:intron 60.0%
GTGTGGACCCCCTTGATAGG+TGG - chr2_4:48304056-48304075 Msa0332000:intron 60.0%
AGACTCCGAGGCAGCAGAGT+TGG - chr2_4:48304724-48304743 Msa0332000:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 48298869 48305098 48298869 ID=Msa0332000;Name=Msa0332000
chr2_4 mRNA 48298869 48305098 48298869 ID=Msa0332000-mRNA-1;Parent=Msa0332000;Name=Msa0332000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|0.9|0.81|11|194|710
chr2_4 exon 48298869 48299326 48298869 ID=Msa0332000-mRNA-1:exon:14583;Parent=Msa0332000-mRNA-1
chr2_4 exon 48300034 48300270 48300034 ID=Msa0332000-mRNA-1:exon:14582;Parent=Msa0332000-mRNA-1
chr2_4 exon 48300466 48300516 48300466 ID=Msa0332000-mRNA-1:exon:14581;Parent=Msa0332000-mRNA-1
chr2_4 exon 48300689 48300778 48300689 ID=Msa0332000-mRNA-1:exon:14580;Parent=Msa0332000-mRNA-1
chr2_4 exon 48300903 48301130 48300903 ID=Msa0332000-mRNA-1:exon:14579;Parent=Msa0332000-mRNA-1
chr2_4 exon 48301595 48301933 48301595 ID=Msa0332000-mRNA-1:exon:14578;Parent=Msa0332000-mRNA-1
chr2_4 exon 48302385 48302497 48302385 ID=Msa0332000-mRNA-1:exon:14577;Parent=Msa0332000-mRNA-1
chr2_4 exon 48302595 48302718 48302595 ID=Msa0332000-mRNA-1:exon:14576;Parent=Msa0332000-mRNA-1
chr2_4 exon 48302818 48302983 48302818 ID=Msa0332000-mRNA-1:exon:14575;Parent=Msa0332000-mRNA-1
chr2_4 exon 48303179 48303722 48303179 ID=Msa0332000-mRNA-1:exon:14574;Parent=Msa0332000-mRNA-1
chr2_4 exon 48304784 48305098 48304784 ID=Msa0332000-mRNA-1:exon:14573;Parent=Msa0332000-mRNA-1
chr2_4 five_prime_UTR 48304784 48305098 48304784 ID=Msa0332000-mRNA-1:five_prime_utr;Parent=Msa0332000-mRNA-1
chr2_4 five_prime_UTR 48303700 48303722 48303700 ID=Msa0332000-mRNA-1:five_prime_utr;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48303179 48303699 48303179 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48302818 48302983 48302818 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48302595 48302718 48302595 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48302385 48302497 48302385 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48301595 48301933 48301595 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48300903 48301130 48300903 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48300689 48300778 48300689 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48300466 48300516 48300466 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48300034 48300270 48300034 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 CDS 48299063 48299326 48299063 ID=Msa0332000-mRNA-1:cds;Parent=Msa0332000-mRNA-1
chr2_4 three_prime_UTR 48298869 48299062 48298869 ID=Msa0332000-mRNA-1:three_prime_utr;Parent=Msa0332000-mRNA-1
Gene Sequence

>Msa0332000

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAAGACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGCTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGAACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAAGGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAACATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAAACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATTGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>Msa0332000

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKDRLKSKSHKLGGCTNVSVKTATDSSNKVPTKDSSNKRLIVEQSLHKTDRNSTKIQGGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQKHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSGSDEVHLNEPSIMYVPIAELREKVK*