AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283520 MtrunA17_Chr2g0298701 93.166 717 32 3 1 710 1 707 0.0 1300
Msa0283520 MtrunA17_Chr1g0207661 47.210 233 115 3 139 371 245 469 4.26e-58 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283520 AT4G29940.1 58.118 425 158 5 136 546 97 515 1.19e-155 471
Msa0283520 AT4G29940.2 58.118 425 158 5 136 546 97 515 1.33e-155 469
Msa0283520 AT3G19510.1 47.177 248 121 3 123 369 158 396 5.17e-61 218
Msa0283520 AT3G19510.2 47.177 248 121 3 123 369 158 396 5.17e-61 218

Find 144 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGCATCACAATCTTTA+AGG 0.134962 2_3:+20767073 None:intergenic
CCCAAGTGTGGAGGTATTTC+TGG 0.146341 2_3:+20762129 None:intergenic
AGGGCGTCCTTCACGGATTT+TGG 0.158407 2_3:+20762799 None:intergenic
GATGGATAGGAAATTGAAAT+TGG 0.159981 2_3:+20767002 None:intergenic
AAGAACAATGATAGAATAAA+AGG 0.187496 2_3:-20763037 Msa0283520:CDS
TCCAGCATGTGGTCTTTAAA+TGG 0.227946 2_3:-20763807 Msa0283520:CDS
ATCCTTGGTTGGCACCTTAT+TGG 0.235926 2_3:+20765558 None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG 0.247836 2_3:+20764550 None:intergenic
CCTCCACACTTGGGAGAAAA+TGG 0.255233 2_3:-20762120 Msa0283520:CDS
CTATCATTGTTCTTATTATT+CGG 0.255964 2_3:+20763046 None:intergenic
CTGAAATTGAAGAGAAAATA+TGG 0.293844 2_3:+20766864 None:intergenic
AACCTGCCAAGTACTGTCTA+AGG 0.296673 2_3:+20764462 None:intergenic
TCAGTCTGTCTTTCTTCCTT+TGG 0.302813 2_3:+20765644 None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG 0.343007 2_3:+20763888 None:intergenic
AGATATTCCTTGTTCTTCTC+TGG 0.348606 2_3:+20765326 None:intergenic
TGACTGTAAGATAGAAATAT+TGG 0.355208 2_3:-20764518 Msa0283520:CDS
GGATTATAGTCATCGTCTTC+AGG 0.355847 2_3:+20763909 None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG 0.358216 2_3:+20762792 None:intergenic
AGCTACTGATTCTTCCAATA+AGG 0.369588 2_3:-20765572 Msa0283520:CDS
AGAATAAAAGGGAATTCTTC+AGG 0.374854 2_3:-20763025 Msa0283520:CDS
CAGAGTATAATATCATTATC+TGG 0.390452 2_3:+20764740 None:intergenic
CTTTAAGGTTCTTGTTGTGT+TGG 0.395929 2_3:+20767088 None:intergenic
GAAGATGAAGATTGGGGTCC+TGG 0.398942 2_3:-20763145 Msa0283520:CDS
AGATTGAAGCAAAGATTAAC+TGG 0.399258 2_3:-20761239 Msa0283520:CDS
GGACGCCCTTTCGAAAGAAA+TGG 0.401279 2_3:-20762785 Msa0283520:CDS
ATGGATAGGAAATTGAAATT+GGG 0.404420 2_3:+20767003 None:intergenic
TATCCATCATTCAATCGAAA+AGG 0.404944 2_3:-20766987 Msa0283520:five_prime_UTR
AAGAAGTGTGAAAATGTTAC+TGG 0.405838 2_3:-20762198 Msa0283520:CDS
ATGTTCCTATAGCTGAGTTA+AGG 0.407231 2_3:-20761157 Msa0283520:CDS
AAACTTCTCTTAATCATGAT+AGG 0.417638 2_3:-20765459 Msa0283520:CDS
AGTTCAGTTGGTAGTATTGA+AGG 0.418881 2_3:-20764938 Msa0283520:CDS
CACATAGATTCTGATGAATC+CGG 0.421682 2_3:-20763732 Msa0283520:CDS
CCGTGATGCCATTCACCAAC+TGG 0.421979 2_3:-20764969 Msa0283520:CDS
GAGATGTCTTGATCCTCCTT+TGG 0.422829 2_3:-20764687 Msa0283520:CDS
AGATTCCCAATGTTGATACT+AGG 0.428050 2_3:+20767030 None:intergenic
AGTGAGTGAAGATGAAGATT+GGG 0.435286 2_3:-20763152 Msa0283520:CDS
CCCCTTAGACAGTACTTGGC+AGG 0.439188 2_3:-20764464 Msa0283520:intron
ATAGGAACATACATAATAGA+TGG 0.443496 2_3:+20761170 None:intergenic
GGAGTTCAAAATTGCAGATC+GGG 0.444432 2_3:-20761218 Msa0283520:CDS
CGATAATGCAGGTTAACAAA+TGG 0.446754 2_3:-20762584 Msa0283520:intron
ACATGTTCCTTTGTGTTACT+CGG 0.451425 2_3:+20765715 None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG 0.455270 2_3:-20761156 Msa0283520:CDS
TAATGAAACTATTGCAAGAA+AGG 0.457497 2_3:-20761352 Msa0283520:CDS
AGACTCCGAGGCAGCAGAGT+TGG 0.457827 2_3:-20761300 Msa0283520:CDS
AAGTGAGTGAAGATGAAGAT+TGG 0.458660 2_3:-20763153 Msa0283520:CDS
AGGCAACAAACGCGCATCTT+GGG 0.460252 2_3:-20764495 Msa0283520:CDS
GAGGCAACAAACGCGCATCT+TGG 0.466032 2_3:-20764496 Msa0283520:CDS
AAATTCCAACTCTGCTGCCT+CGG 0.470562 2_3:+20761295 None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG 0.473153 2_3:-20764950 Msa0283520:CDS
ATTTCCCCTTAGACAGTACT+TGG 0.477866 2_3:-20764468 Msa0283520:CDS
AAAGTCTACATAAAACTGAT+AGG 0.478611 2_3:-20765507 Msa0283520:CDS
GGTAATAATACATTAATGTA+TGG 0.479759 2_3:-20761071 Msa0283520:three_prime_UTR
TTCCTCCTGAAGACCAAGGC+TGG 0.484945 2_3:-20764555 Msa0283520:CDS
CAAGTCCCATTTCTTTCGAA+AGG 0.486339 2_3:+20762779 None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG 0.488966 2_3:-20761150 Msa0283520:CDS
GAAAATTTATAACTTCAAAC+CGG 0.490601 2_3:+20761016 None:intergenic
AGAACAATGATAGAATAAAA+GGG 0.492512 2_3:-20763036 Msa0283520:CDS
GACGCCCTTTCGAAAGAAAT+GGG 0.493793 2_3:-20762784 Msa0283520:CDS
AGTAATGCAGCATCGCCGTC+AGG 0.494282 2_3:+20763963 None:intergenic
ACCAGAAATACCTCCACACT+TGG 0.495132 2_3:-20762130 Msa0283520:CDS
AAGTCCCATTTCTTTCGAAA+GGG 0.495232 2_3:+20762780 None:intergenic
CTTCTGTGTTGATGCCACCA+TGG 0.498525 2_3:+20763868 None:intergenic
TACTAAATCAAGAAGAAGAA+TGG 0.501022 2_3:-20763944 Msa0283520:CDS
GTACAATGAAATGAAGCAAC+CGG 0.503191 2_3:-20761035 Msa0283520:three_prime_UTR
CTCCAGCGTAAGCATCGATA+AGG 0.509397 2_3:+20765278 None:intergenic
TTATTTGAAGAATCCTTGGT+TGG 0.511651 2_3:+20765547 None:intergenic
ATCCATCATTCAATCGAAAA+GGG 0.514565 2_3:-20766986 Msa0283520:five_prime_UTR
ACGACCACATGCTATTTCCC+CGG 0.515781 2_3:+20763713 None:intergenic
ATCGATGCTTACGCTGGAGA+AGG 0.517287 2_3:-20765274 Msa0283520:CDS
GTCACAGTCGAGAGAAGATT+AGG 0.517689 2_3:-20765048 Msa0283520:intron
TTCTACATCACAACATGTGC+AGG 0.518102 2_3:-20762274 Msa0283520:CDS
CATGGCACTTAAAATGAGAA+AGG 0.518506 2_3:-20762544 Msa0283520:intron
TCCATTTAAAGACCACATGC+TGG 0.518896 2_3:+20763806 None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG 0.519329 2_3:+20764961 None:intergenic
GGTCGTTAGAATAATATTCA+AGG 0.522036 2_3:+20763754 None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG 0.525646 2_3:-20765038 Msa0283520:CDS
ACGTAAATAGATTAATATGC+GGG 0.526006 2_3:-20765773 Msa0283520:exon
AAGGAGGATCAAGACATCTC+TGG 0.528780 2_3:+20764690 None:intergenic
ACATAGATTCTGATGAATCC+GGG 0.537290 2_3:-20763731 Msa0283520:CDS
ACATACCTAGTATCAACATT+GGG 0.539661 2_3:-20767035 Msa0283520:five_prime_UTR
AAAGGAACATGTCAAGTTGA+AGG 0.541741 2_3:-20765704 Msa0283520:CDS
GGTTCTGTCATTGCTACAGA+TGG 0.542741 2_3:-20764917 Msa0283520:CDS
ACCTGCCAAGTACTGTCTAA+GGG 0.543897 2_3:+20764463 None:intergenic
AACCTTATCGATGCTTACGC+TGG 0.549016 2_3:-20765280 Msa0283520:CDS
CACATACCTAGTATCAACAT+TGG 0.553170 2_3:-20767036 Msa0283520:five_prime_UTR
AATACTTGCAAAACCAGCCT+TGG 0.554312 2_3:+20764542 None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG 0.555448 2_3:-20765270 Msa0283520:CDS
TATTCCTTGTTCTTCTCTGG+AGG 0.556906 2_3:+20765329 None:intergenic
TGGAGTTCAAAATTGCAGAT+CGG 0.560560 2_3:-20761219 Msa0283520:CDS
GAATGTTCTATGTTAGATGA+AGG 0.561374 2_3:-20763783 Msa0283520:CDS
GAGAAGAGAAAAGGAGTCTG+AGG 0.568921 2_3:-20763113 Msa0283520:CDS
TCTTCACTCACTTGTTCACA+AGG 0.570005 2_3:+20763163 None:intergenic
GAAAATTATGATTCATGTGG+TGG 0.575125 2_3:-20760953 Msa0283520:three_prime_UTR
AACATCATCACTGACCTCCA+TGG 0.580335 2_3:+20761379 None:intergenic
TGACTATAATCCAGAGAGGA+AGG 0.581091 2_3:-20763898 Msa0283520:CDS
GGGAAATAGCATGTGGTCGT+AGG 0.581992 2_3:-20763710 Msa0283520:CDS
AGGAAAGGTGAGATAGATGT+TGG 0.583618 2_3:-20765439 Msa0283520:CDS
ACAACATGTGCAGGAAGAAG+AGG 0.585587 2_3:-20762265 Msa0283520:CDS
AATGGGACTTGATGCTGCAA+AGG 0.589378 2_3:-20762767 Msa0283520:intron
AATGATATTATACTCTGTGA+TGG 0.590683 2_3:-20764734 Msa0283520:CDS
GATAGATGTTGGTGATCAAG+AGG 0.591239 2_3:-20765428 Msa0283520:CDS
TTTGTTTAGCTTCAAGAAGG+AGG 0.591319 2_3:-20762336 Msa0283520:intron
CAAGTAGCACAAAACACCAA+AGG 0.591492 2_3:-20765660 Msa0283520:CDS
TCTCTTAATCATGATAGGAA+AGG 0.591668 2_3:-20765454 Msa0283520:CDS
CAAGTAGTTCTTCCAGCATG+TGG 0.596343 2_3:-20763818 Msa0283520:CDS
TTCCAATAAGGTGCCAACCA+AGG 0.598203 2_3:-20765560 Msa0283520:CDS
CTGTAAGATAGAAATATTGG+AGG 0.603472 2_3:-20764515 Msa0283520:CDS
CCAGTTGGTGAATGGCATCA+CGG 0.605629 2_3:+20764969 None:intergenic
AAATCAAAATCTCATAAACT+CGG 0.606698 2_3:-20765622 Msa0283520:CDS
TACGCTGGAGAAGGTTGGAA+AGG 0.611602 2_3:-20765265 Msa0283520:CDS
CATGGTGGCATCAACACAGA+AGG 0.612139 2_3:-20763867 Msa0283520:CDS
GAAGAAGCTGCTATTCCTGA+CGG 0.614571 2_3:-20763978 Msa0283520:CDS
TATCACTTCTAAGAACTCAA+AGG 0.617285 2_3:-20762298 Msa0283520:CDS
CGGAGGTTGCACAAATGTGT+CGG 0.617900 2_3:-20765602 Msa0283520:CDS
CTGAACTAAGAGAATCCAGT+TGG 0.618760 2_3:+20764954 None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG 0.618854 2_3:+20764674 None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG 0.619248 2_3:+20764671 None:intergenic
CGGATTCATCAGAATCTATG+TGG 0.622262 2_3:+20763733 None:intergenic
AGGAATTCAACAAAGATACA+AGG 0.629477 2_3:-20765487 Msa0283520:CDS
CCTGCCAAGTACTGTCTAAG+GGG 0.632462 2_3:+20764464 None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG 0.637015 2_3:-20763885 Msa0283520:CDS
ACTGAGAAGTTAAATAACCA+AGG 0.637280 2_3:-20765748 Msa0283520:CDS
CTTGGGAGAAAATGGCAACA+AGG 0.637413 2_3:-20762112 Msa0283520:intron
TCATGTGAAAACCTAAAACA+AGG 0.637563 2_3:+20762992 None:intergenic
TCGTCTTCAGGATCATCTGA+CGG 0.640667 2_3:+20763921 None:intergenic
TACGTAAATAGATTAATATG+CGG 0.644745 2_3:-20765774 Msa0283520:exon
CCAGAAATACCTCCACACTT+GGG 0.646657 2_3:-20762129 Msa0283520:CDS
GAGAAGGTTGGAAAGGTCAG+AGG 0.649501 2_3:-20765258 Msa0283520:intron
AGGAAGGAAGAAAGCCATGG+TGG 0.650653 2_3:-20763882 Msa0283520:CDS
GTGAGTGAAGATGAAGATTG+GGG 0.652036 2_3:-20763151 Msa0283520:CDS
AACCAGCCTTGGTCTTCAGG+AGG 0.652976 2_3:+20764553 None:intergenic
CATAGATTCTGATGAATCCG+GGG 0.669012 2_3:-20763730 Msa0283520:CDS
TACAAAACCGAGTAACACAA+AGG 0.669844 2_3:-20765722 Msa0283520:CDS
GCTTCCTCCAAAATCCGTGA+AGG 0.670380 2_3:-20762806 Msa0283520:CDS
GCAGTTCCTCCTGAAGACCA+AGG 0.671156 2_3:-20764559 Msa0283520:intron
TCACTCACTTGTTCACAAGG+TGG 0.675741 2_3:+20763166 None:intergenic
TGCATTTGAAGGAGACTCCG+AGG 0.681549 2_3:-20761312 Msa0283520:CDS
TCAAAATCTCATAAACTCGG+AGG 0.684427 2_3:-20765619 Msa0283520:CDS
ATGGAAAATTATGATTCATG+TGG 0.684751 2_3:-20760956 Msa0283520:three_prime_UTR
TTATCTTCAGGATTCCATGG+AGG 0.700522 2_3:-20761393 Msa0283520:intron
GAATCCGGGGAAATAGCATG+TGG 0.711313 2_3:-20763717 Msa0283520:CDS
AATTCAACAAAGATACAAGG+AGG 0.723347 2_3:-20765484 Msa0283520:CDS
ACGATGACTATAATCCAGAG+AGG 0.733914 2_3:-20763902 Msa0283520:CDS
TACGCCTCCAGAGAAGAACA+AGG 0.736747 2_3:-20765333 Msa0283520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGATTTAAAACAAA+AGG + chr2_3:20761372-20761391 None:intergenic 10.0%
!! TTTGTAAAAAAAAATTTACA+CGG - chr2_3:20763822-20763841 Msa0283520:CDS 10.0%
!!! GAAAAAACATTTATTATTTT+TGG + chr2_3:20764080-20764099 None:intergenic 10.0%
!! ATAAATGATCATATAAATAA+AGG - chr2_3:20764564-20764583 Msa0283520:intron 10.0%
!!! TCTTTGTATGATTTTATATA+TGG - chr2_3:20761923-20761942 Msa0283520:intron 15.0%
!! CTGTATATAATCATTAAAAA+TGG - chr2_3:20762086-20762105 Msa0283520:intron 15.0%
!!! TATCTTATTATTTTCTAACA+TGG - chr2_3:20762142-20762161 Msa0283520:CDS 15.0%
!! GTTAGATCATTAAAAATATT+AGG + chr2_3:20763933-20763952 None:intergenic 15.0%
!!! TTTTATAATTTATCTTGAAG+AGG - chr2_3:20764739-20764758 Msa0283520:CDS 15.0%
!!! TTTAAATATTTGTTTTCAGT+TGG + chr2_3:20765205-20765224 None:intergenic 15.0%
!! CACTAATAAAAGAAAAAAAA+AGG + chr2_3:20765613-20765632 None:intergenic 15.0%
!! AATTAAACAATTCTTACAAA+AGG + chr2_3:20765637-20765656 None:intergenic 15.0%
!!! TAGTTTTAAATCCTATAATA+AGG - chr2_3:20765673-20765692 Msa0283520:CDS 15.0%
!!! TTAATAAATTGTTTTGTTCT+TGG - chr2_3:20765715-20765734 Msa0283520:CDS 15.0%
!!! CTTTTTTTTTTACATTTAAC+AGG + chr2_3:20766479-20766498 None:intergenic 15.0%
!! ACTAAATAAAAAACAGTTAT+TGG + chr2_3:20766578-20766597 None:intergenic 15.0%
!! TACGTAAATAGATTAATATG+CGG - chr2_3:20762330-20762349 Msa0283520:CDS 20.0%
!! AAATCAAAATCTCATAAACT+CGG - chr2_3:20762482-20762501 Msa0283520:intron 20.0%
!! TAATAACTAACAATTCAAGA+AGG + chr2_3:20762970-20762989 None:intergenic 20.0%
!!! GTTTTTTCTGTCAAAAATTA+AGG - chr2_3:20764092-20764111 Msa0283520:intron 20.0%
!! AAAAATTAAGGATGTATTCA+AGG - chr2_3:20764104-20764123 Msa0283520:intron 20.0%
!!! ATAAAGGTACTATTTAAAAC+AGG - chr2_3:20764580-20764599 Msa0283520:intron 20.0%
!!! TTTGTTTTATCTGTTGTTAT+AGG + chr2_3:20764665-20764684 None:intergenic 20.0%
!!! TTATGAAAATAAGTTGAAAC+CGG - chr2_3:20764762-20764781 Msa0283520:CDS 20.0%
!! CTATCATTGTTCTTATTATT+CGG + chr2_3:20765061-20765080 None:intergenic 20.0%
!! AAGAACAATGATAGAATAAA+AGG - chr2_3:20765067-20765086 Msa0283520:intron 20.0%
!! AGAACAATGATAGAATAAAA+GGG - chr2_3:20765068-20765087 Msa0283520:intron 20.0%
!! GGTAATAATACATTAATGTA+TGG - chr2_3:20767033-20767052 Msa0283520:five_prime_UTR 20.0%
!! GAAAATTTATAACTTCAAAC+CGG + chr2_3:20767091-20767110 None:intergenic 20.0%
!!! CATATTTTCATTTTGTTCTA+TGG - chr2_3:20767129-20767148 Msa0283520:five_prime_UTR 20.0%
! ATGGATAGGAAATTGAAATT+GGG + chr2_3:20761104-20761123 None:intergenic 25.0%
! CTGAAATTGAAGAGAAAATA+TGG + chr2_3:20761243-20761262 None:intergenic 25.0%
!! CATATTTTCTCTTCAATTTC+AGG - chr2_3:20761241-20761260 Msa0283520:CDS 25.0%
!!! TTGTTTTGGATTTTTACTTG+TGG - chr2_3:20761305-20761324 Msa0283520:CDS 25.0%
!!! TGTTTTGGATTTTTACTTGT+GGG - chr2_3:20761306-20761325 Msa0283520:CDS 25.0%
! ATAAAACGAAAACGAATGAA+TGG + chr2_3:20762005-20762024 None:intergenic 25.0%
!! ATAAGTAGTTCTTTGACTTA+TGG + chr2_3:20762170-20762189 None:intergenic 25.0%
! TTACTATTATGACTGTATCA+GGG - chr2_3:20762303-20762322 Msa0283520:CDS 25.0%
! ACGTAAATAGATTAATATGC+GGG - chr2_3:20762331-20762350 Msa0283520:intron 25.0%
!!! TCTTTTATTTGAAGAATCCT+TGG + chr2_3:20762564-20762583 None:intergenic 25.0%
! AAAGTCTACATAAAACTGAT+AGG - chr2_3:20762597-20762616 Msa0283520:intron 25.0%
! AAACTTCTCTTAATCATGAT+AGG - chr2_3:20762645-20762664 Msa0283520:intron 25.0%
!! ATCTCATTCTATGGATTAAA+AGG + chr2_3:20762939-20762958 None:intergenic 25.0%
! AAAAATGTTTCAACACAATG+AGG + chr2_3:20763287-20763306 None:intergenic 25.0%
! CAGAGTATAATATCATTATC+TGG + chr2_3:20763367-20763386 None:intergenic 25.0%
! AATGATATTATACTCTGTGA+TGG - chr2_3:20763370-20763389 Msa0283520:intron 25.0%
! TGACTGTAAGATAGAAATAT+TGG - chr2_3:20763586-20763605 Msa0283520:intron 25.0%
! CTTAAAAGTCATGCAAATAA+TGG + chr2_3:20763745-20763764 None:intergenic 25.0%
!!! ATTTGCATGACTTTTAAGTT+AGG - chr2_3:20763747-20763766 Msa0283520:CDS 25.0%
! ATCAGTTAATCATAAACTGT+TGG + chr2_3:20763802-20763821 None:intergenic 25.0%
! GAAGTAAAAATCTGAAGATT+TGG + chr2_3:20763899-20763918 None:intergenic 25.0%
!! AGATTTTTACTTCCTTCTAT+TGG - chr2_3:20763906-20763925 Msa0283520:CDS 25.0%
! AAAATATTAGGACCAATAGA+AGG + chr2_3:20763921-20763940 None:intergenic 25.0%
! GAAGTGAAAATCAAAATACT+TGG + chr2_3:20764046-20764065 None:intergenic 25.0%
!!! ATTATTTTTGGACCAATAGA+AGG + chr2_3:20764068-20764087 None:intergenic 25.0%
! TACTAAATCAAGAAGAAGAA+TGG - chr2_3:20764160-20764179 Msa0283520:intron 25.0%
! TCAAATAAGTTAATCCAAAC+CGG - chr2_3:20764861-20764880 Msa0283520:intron 25.0%
!!! ATTTAAGTTCCTATCTTTTC+AGG - chr2_3:20764895-20764914 Msa0283520:intron 25.0%
! TTATCGAACATGTTAATAAC+AGG + chr2_3:20765506-20765525 None:intergenic 25.0%
!! ACAGTAATTTTTGCAATCTT+CGG + chr2_3:20765873-20765892 None:intergenic 25.0%
!! CATTTCAATGTTTTATCTTC+AGG - chr2_3:20766699-20766718 Msa0283520:intron 25.0%
! TAATGAAACTATTGCAAGAA+AGG - chr2_3:20766752-20766771 Msa0283520:intron 25.0%
! ATAGGAACATACATAATAGA+TGG + chr2_3:20766937-20766956 None:intergenic 25.0%
! ATGGAAAATTATGATTCATG+TGG - chr2_3:20767148-20767167 Msa0283520:five_prime_UTR 25.0%
ACATACCTAGTATCAACATT+GGG - chr2_3:20761069-20761088 Msa0283520:three_prime_UTR 30.0%
GATGGATAGGAAATTGAAAT+TGG + chr2_3:20761105-20761124 None:intergenic 30.0%
!!! TTTTCGATTGAATGATGGAT+AGG + chr2_3:20761118-20761137 None:intergenic 30.0%
TATCCATCATTCAATCGAAA+AGG - chr2_3:20761117-20761136 Msa0283520:three_prime_UTR 30.0%
ATCCATCATTCAATCGAAAA+GGG - chr2_3:20761118-20761137 Msa0283520:three_prime_UTR 30.0%
!!! TCAGGTTAGTTTTGTTTCAT+TGG - chr2_3:20761259-20761278 Msa0283520:CDS 30.0%
!! GTTTTGGATTTTTACTTGTG+GGG - chr2_3:20761307-20761326 Msa0283520:CDS 30.0%
ATTCATCATTCATGTGCAAA+AGG + chr2_3:20761349-20761368 None:intergenic 30.0%
CAATCAATTCAAGCAAATCA+TGG + chr2_3:20761566-20761585 None:intergenic 30.0%
CTCATATTGTGATGTTTACT+TGG - chr2_3:20761590-20761609 Msa0283520:intron 30.0%
!!! TACTTGGTGATGTTACATTT+TGG - chr2_3:20761606-20761625 Msa0283520:intron 30.0%
! ATTTTACGCAGAATTGAGAA+GGG - chr2_3:20761760-20761779 Msa0283520:intron 30.0%
ACAAAGATGAGAGAGTTAAT+AGG + chr2_3:20761910-20761929 None:intergenic 30.0%
!! AGGACTTGATGATGTAATTT+CGG - chr2_3:20762063-20762082 Msa0283520:intron 30.0%
CTTACTATTATGACTGTATC+AGG - chr2_3:20762302-20762321 Msa0283520:CDS 30.0%
ACTGAGAAGTTAAATAACCA+AGG - chr2_3:20762356-20762375 Msa0283520:intron 30.0%
TTATTTGAAGAATCCTTGGT+TGG + chr2_3:20762560-20762579 None:intergenic 30.0%
AGGAATTCAACAAAGATACA+AGG - chr2_3:20762617-20762636 Msa0283520:intron 30.0%
AATTCAACAAAGATACAAGG+AGG - chr2_3:20762620-20762639 Msa0283520:intron 30.0%
TCTCTTAATCATGATAGGAA+AGG - chr2_3:20762650-20762669 Msa0283520:intron 30.0%
ACATTCAAAAACGTAAGAGA+AGG - chr2_3:20762702-20762721 Msa0283520:intron 30.0%
CTCATAAAAATAGCGATACA+GGG + chr2_3:20763261-20763280 None:intergenic 30.0%
TCTCATAAAAATAGCGATAC+AGG + chr2_3:20763262-20763281 None:intergenic 30.0%
AATTTGCACAGAATATCTAG+AGG + chr2_3:20763324-20763343 None:intergenic 30.0%
GTTCAATCTTTAATGTGACA+CGG - chr2_3:20763484-20763503 Msa0283520:intron 30.0%
CTGTAAGATAGAAATATTGG+AGG - chr2_3:20763589-20763608 Msa0283520:intron 30.0%
TTTGGTTGTGCATGAAAAAA+GGG + chr2_3:20763881-20763900 None:intergenic 30.0%
ATTTGGTTGTGCATGAAAAA+AGG + chr2_3:20763882-20763901 None:intergenic 30.0%
! TGATTTTCACTTCCTTCTAT+TGG - chr2_3:20764053-20764072 Msa0283520:intron 30.0%
GAATGTTCTATGTTAGATGA+AGG - chr2_3:20764321-20764340 Msa0283520:intron 30.0%
GGTCGTTAGAATAATATTCA+AGG + chr2_3:20764353-20764372 None:intergenic 30.0%
TGAAATCTTTAGCAGTCATA+CGG - chr2_3:20764504-20764523 Msa0283520:CDS 30.0%
AAGTACTTGTGATACTGTTT+GGG + chr2_3:20764825-20764844 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG + chr2_3:20764826-20764845 None:intergenic 30.0%
TAGGAACTTAAATGAAACCT+TGG + chr2_3:20764888-20764907 None:intergenic 30.0%
CAAACATTTCCTGAAAAGAT+AGG + chr2_3:20764907-20764926 None:intergenic 30.0%
!! CTATCTTTTCAGGAAATGTT+TGG - chr2_3:20764905-20764924 Msa0283520:CDS 30.0%
!! TTTTCAGGAAATGTTTGGAA+AGG - chr2_3:20764910-20764929 Msa0283520:CDS 30.0%
AGAATAAAAGGGAATTCTTC+AGG - chr2_3:20765079-20765098 Msa0283520:intron 30.0%
!!! GCATAAAAAGACCTTGTTTT+AGG - chr2_3:20765101-20765120 Msa0283520:intron 30.0%
TCATGTGAAAACCTAAAACA+AGG + chr2_3:20765115-20765134 None:intergenic 30.0%
GAGATGGATGCAAATTTATA+GGG + chr2_3:20765416-20765435 None:intergenic 30.0%
!! GAGTTATTTGCATTGCTTTT+TGG - chr2_3:20765440-20765459 Msa0283520:CDS 30.0%
CATGTTAATAACAGGAAGTT+TGG + chr2_3:20765498-20765517 None:intergenic 30.0%
ATTAACATGTTCGATAATGC+AGG - chr2_3:20765509-20765528 Msa0283520:CDS 30.0%
CAATAAACTTTGACACAAGT+GGG - chr2_3:20765744-20765763 Msa0283520:CDS 30.0%
! TATCACTTCTAAGAACTCAA+AGG - chr2_3:20765806-20765825 Msa0283520:intron 30.0%
! CAGTAATTTTTGCAATCTTC+GGG + chr2_3:20765872-20765891 None:intergenic 30.0%
GAAGATTGCAAAAATTACTG+TGG - chr2_3:20765872-20765891 Msa0283520:intron 30.0%
! ACATTTTCACACTTCTTCAA+GGG + chr2_3:20765903-20765922 None:intergenic 30.0%
! AACATTTTCACACTTCTTCA+AGG + chr2_3:20765904-20765923 None:intergenic 30.0%
! AAGAAGTGTGAAAATGTTAC+TGG - chr2_3:20765906-20765925 Msa0283520:intron 30.0%
!! TGTCGGTTTGACAAAAATAA+AGG - chr2_3:20766239-20766258 Msa0283520:intron 30.0%
CCACGAAAACTTAAGTTATT+AGG + chr2_3:20766666-20766685 None:intergenic 30.0%
! CCTAATAACTTAAGTTTTCG+TGG - chr2_3:20766663-20766682 Msa0283520:intron 30.0%
ATTGCAAGAAAGGAAAAAGA+AGG - chr2_3:20766762-20766781 Msa0283520:intron 30.0%
! AAGGTAAGTTTTGCATTTGA+AGG - chr2_3:20766781-20766800 Msa0283520:intron 30.0%
AGATTGAAGCAAAGATTAAC+TGG - chr2_3:20766865-20766884 Msa0283520:five_prime_UTR 30.0%
! TTAAAACATTTTTGCACAGC+AGG - chr2_3:20767011-20767030 Msa0283520:five_prime_UTR 30.0%
! TAAAACATTTTTGCACAGCA+GGG - chr2_3:20767012-20767031 Msa0283520:five_prime_UTR 30.0%
GAAAATTATGATTCATGTGG+TGG - chr2_3:20767151-20767170 Msa0283520:five_prime_UTR 30.0%
!! CTTTAAGGTTCTTGTTGTGT+TGG + chr2_3:20761019-20761038 None:intergenic 35.0%
! TCGAAGCATCACAATCTTTA+AGG + chr2_3:20761034-20761053 None:intergenic 35.0%
CACATACCTAGTATCAACAT+TGG - chr2_3:20761068-20761087 Msa0283520:three_prime_UTR 35.0%
AGATTCCCAATGTTGATACT+AGG + chr2_3:20761077-20761096 None:intergenic 35.0%
! AACCCTTTTCGATTGAATGA+TGG + chr2_3:20761123-20761142 None:intergenic 35.0%
!! TCATTGGTGTTAAGTTCATG+TGG - chr2_3:20761275-20761294 Msa0283520:CDS 35.0%
!! CATTGGTGTTAAGTTCATGT+GGG - chr2_3:20761276-20761295 Msa0283520:CDS 35.0%
! GATTTTACGCAGAATTGAGA+AGG - chr2_3:20761759-20761778 Msa0283520:intron 35.0%
! TCATGCAATTTTGCCATTGT+TGG - chr2_3:20761969-20761988 Msa0283520:intron 35.0%
TGGAAAATGCTATCCAACAA+TGG + chr2_3:20761985-20762004 None:intergenic 35.0%
AAGAACAGACTTAGACTTAC+AGG - chr2_3:20762043-20762062 Msa0283520:intron 35.0%
TACAATATGTGTTTCTCCGT+TGG - chr2_3:20762257-20762276 Msa0283520:CDS 35.0%
GTCAAGATGAATTCTTCCAA+CGG + chr2_3:20762276-20762295 None:intergenic 35.0%
TACAAAACCGAGTAACACAA+AGG - chr2_3:20762382-20762401 Msa0283520:intron 35.0%
! ACATGTTCCTTTGTGTTACT+CGG + chr2_3:20762392-20762411 None:intergenic 35.0%
!! AAAGGAACATGTCAAGTTGA+AGG - chr2_3:20762400-20762419 Msa0283520:intron 35.0%
!!! TGTGCTACTTGTTTTGAACT+GGG + chr2_3:20762435-20762454 None:intergenic 35.0%
!!! TTGTGCTACTTGTTTTGAAC+TGG + chr2_3:20762436-20762455 None:intergenic 35.0%
TCAAAATCTCATAAACTCGG+AGG - chr2_3:20762485-20762504 Msa0283520:intron 35.0%
!! AGCTACTGATTCTTCCAATA+AGG - chr2_3:20762532-20762551 Msa0283520:intron 35.0%
AGATATTCCTTGTTCTTCTC+TGG + chr2_3:20762781-20762800 None:intergenic 35.0%
!! AGTTCAGTTGGTAGTATTGA+AGG - chr2_3:20763166-20763185 Msa0283520:CDS 35.0%
CACATAGATTCTGATGAATC+CGG - chr2_3:20764372-20764391 Msa0283520:intron 35.0%
ACATAGATTCTGATGAATCC+GGG - chr2_3:20764373-20764392 Msa0283520:intron 35.0%
TAAGTGCCTATTAGCATAAG+CGG - chr2_3:20764608-20764627 Msa0283520:intron 35.0%
TGATAACCGCTTATGCTAAT+AGG + chr2_3:20764617-20764636 None:intergenic 35.0%
! AATAAGTTGAAACCGGCTTA+TGG - chr2_3:20764769-20764788 Msa0283520:CDS 35.0%
! ATAAGTTGAAACCGGCTTAT+GGG - chr2_3:20764770-20764789 Msa0283520:CDS 35.0%
ACTTAAATGAAACCTTGGTC+CGG + chr2_3:20764883-20764902 None:intergenic 35.0%
AAGTGAGTGAAGATGAAGAT+TGG - chr2_3:20764951-20764970 Msa0283520:CDS 35.0%
AGTGAGTGAAGATGAAGATT+GGG - chr2_3:20764952-20764971 Msa0283520:CDS 35.0%
AAAAAGACGGAGAAGAGAAA+AGG - chr2_3:20764982-20765001 Msa0283520:CDS 35.0%
! TTTTCAGTTGGAACTTTGAG+AGG + chr2_3:20765193-20765212 None:intergenic 35.0%
GCTTCTGGCAAATTTCATAA+TGG + chr2_3:20765253-20765272 None:intergenic 35.0%
AAGTCCCATTTCTTTCGAAA+GGG + chr2_3:20765327-20765346 None:intergenic 35.0%
GGAGATGGATGCAAATTTAT+AGG + chr2_3:20765417-20765436 None:intergenic 35.0%
AAGCAATGCAAATAACTCTG+CGG + chr2_3:20765438-20765457 None:intergenic 35.0%
CGATAATGCAGGTTAACAAA+TGG - chr2_3:20765520-20765539 Msa0283520:CDS 35.0%
GTTCAAAAATGCACGTTACA+TGG - chr2_3:20765542-20765561 Msa0283520:CDS 35.0%
CATGGCACTTAAAATGAGAA+AGG - chr2_3:20765560-20765579 Msa0283520:CDS 35.0%
! ATGATCAGACGCCTTATTAT+AGG + chr2_3:20765687-20765706 None:intergenic 35.0%
GCAATAAACTTTGACACAAG+TGG - chr2_3:20765743-20765762 Msa0283520:CDS 35.0%
!!! GGTTTTGTTTAGCTTCAAGA+AGG - chr2_3:20765765-20765784 Msa0283520:exon 35.0%
! TTTGTTTAGCTTCAAGAAGG+AGG - chr2_3:20765768-20765787 Msa0283520:exon 35.0%
AATGCACGGAATATGACATT+TGG + chr2_3:20766033-20766052 None:intergenic 35.0%
TTCTCAAGCACAAAAATGCA+CGG + chr2_3:20766047-20766066 None:intergenic 35.0%
! GTTCATGCAGTTGATATTTG+AGG - chr2_3:20766093-20766112 Msa0283520:intron 35.0%
! AATTTTACGATACCAGTCCA+TGG + chr2_3:20766166-20766185 None:intergenic 35.0%
GACTGGTATCGTAAAATTGT+TGG - chr2_3:20766168-20766187 Msa0283520:intron 35.0%
AGATGTAACATGATCTGTGT+CGG - chr2_3:20766222-20766241 Msa0283520:intron 35.0%
GACTAGATCATTGTCAAGTT+TGG + chr2_3:20766318-20766337 None:intergenic 35.0%
GACTGTAACTTCTACTTTCA+AGG - chr2_3:20766364-20766383 Msa0283520:intron 35.0%
! GTTTTATCTTCAGGATTCCA+TGG - chr2_3:20766708-20766727 Msa0283520:intron 35.0%
TGGAGTTCAAAATTGCAGAT+CGG - chr2_3:20766885-20766904 Msa0283520:five_prime_UTR 35.0%
ATGTTCCTATAGCTGAGTTA+AGG - chr2_3:20766947-20766966 Msa0283520:five_prime_UTR 35.0%
TGTTCCTATAGCTGAGTTAA+GGG - chr2_3:20766948-20766967 Msa0283520:five_prime_UTR 35.0%
! TTTTCCCTTAACTCAGCTAT+AGG + chr2_3:20766955-20766974 None:intergenic 35.0%
TATAGCTGAGTTAAGGGAAA+AGG - chr2_3:20766954-20766973 Msa0283520:five_prime_UTR 35.0%
GTACAATGAAATGAAGCAAC+CGG - chr2_3:20767069-20767088 Msa0283520:five_prime_UTR 35.0%
!!! CATGTGGGTTTGTCTTGTTT+TGG - chr2_3:20761291-20761310 Msa0283520:CDS 40.0%
TGTGGGGCTTAATAAAGTCA+AGG - chr2_3:20761323-20761342 Msa0283520:CDS 40.0%
AATCTCGATTGTAACCACCT+TGG + chr2_3:20761743-20761762 None:intergenic 40.0%
!! TACTCGGTTTTGTAGATCCT+TGG + chr2_3:20762376-20762395 None:intergenic 40.0%
!!! TGCTACTTGTTTTGAACTGG+GGG + chr2_3:20762433-20762452 None:intergenic 40.0%
!!! GTGCTACTTGTTTTGAACTG+GGG + chr2_3:20762434-20762453 None:intergenic 40.0%
CAAGTAGCACAAAACACCAA+AGG - chr2_3:20762444-20762463 Msa0283520:intron 40.0%
TCAGTCTGTCTTTCTTCCTT+TGG + chr2_3:20762463-20762482 None:intergenic 40.0%
AGGAAAGGTGAGATAGATGT+TGG - chr2_3:20762665-20762684 Msa0283520:intron 40.0%
!! GATAGATGTTGGTGATCAAG+AGG - chr2_3:20762676-20762695 Msa0283520:intron 40.0%
TATTCCTTGTTCTTCTCTGG+AGG + chr2_3:20762778-20762797 None:intergenic 40.0%
GAAATGCGCATCTCATTCTA+TGG + chr2_3:20762948-20762967 None:intergenic 40.0%
AGAGAAGATTAGGCCAGAAA+AGG - chr2_3:20763066-20763085 Msa0283520:CDS 40.0%
!! AAGAGAATCCAGTTGGTGAA+TGG + chr2_3:20763146-20763165 None:intergenic 40.0%
CTGAACTAAGAGAATCCAGT+TGG + chr2_3:20763153-20763172 None:intergenic 40.0%
CTGGATTCTCTTAGTTCAGT+TGG - chr2_3:20763154-20763173 Msa0283520:CDS 40.0%
GCACAGAATATCTAGAGGAT+GGG + chr2_3:20763319-20763338 None:intergenic 40.0%
TGCACAGAATATCTAGAGGA+TGG + chr2_3:20763320-20763339 None:intergenic 40.0%
AATACTTGCAAAACCAGCCT+TGG + chr2_3:20763565-20763584 None:intergenic 40.0%
ATTTCCCCTTAGACAGTACT+TGG - chr2_3:20763636-20763655 Msa0283520:intron 40.0%
GATATACACTGACAGTGTAG+AGG + chr2_3:20763984-20764003 None:intergenic 40.0%
CTTGGTTGTGTAAGAGACAA+GGG + chr2_3:20764028-20764047 None:intergenic 40.0%
ACTTGGTTGTGTAAGAGACA+AGG + chr2_3:20764029-20764048 None:intergenic 40.0%
GGATTATAGTCATCGTCTTC+AGG + chr2_3:20764198-20764217 None:intergenic 40.0%
ACGATGACTATAATCCAGAG+AGG - chr2_3:20764202-20764221 Msa0283520:intron 40.0%
TGACTATAATCCAGAGAGGA+AGG - chr2_3:20764206-20764225 Msa0283520:intron 40.0%
TCCAGCATGTGGTCTTTAAA+TGG - chr2_3:20764297-20764316 Msa0283520:intron 40.0%
TCCATTTAAAGACCACATGC+TGG + chr2_3:20764301-20764320 None:intergenic 40.0%
CGGATTCATCAGAATCTATG+TGG + chr2_3:20764374-20764393 None:intergenic 40.0%
CATAGATTCTGATGAATCCG+GGG - chr2_3:20764374-20764393 Msa0283520:intron 40.0%
TTATGACATGTCCCATAAGC+CGG + chr2_3:20764784-20764803 None:intergenic 40.0%
GTGAGTGAAGATGAAGATTG+GGG - chr2_3:20764953-20764972 Msa0283520:CDS 40.0%
! GTTTTCACATGATGCAGTTG+AGG - chr2_3:20765123-20765142 Msa0283520:intron 40.0%
GCTCATTCTCTGCAAAAACT+TGG + chr2_3:20765280-20765299 None:intergenic 40.0%
CAAGTCCCATTTCTTTCGAA+AGG + chr2_3:20765328-20765347 None:intergenic 40.0%
! AAATCTGACTCGAGACTCTA+AGG + chr2_3:20765368-20765387 None:intergenic 40.0%
TTCTACATCACAACATGTGC+AGG - chr2_3:20765830-20765849 Msa0283520:intron 40.0%
!!! TCTGGTCGCTTTTTCTTCAA+AGG + chr2_3:20765960-20765979 None:intergenic 40.0%
! CATGCAGTTGATATTTGAGG+TGG - chr2_3:20766096-20766115 Msa0283520:intron 40.0%
ATGGTAAACCACCTATCAAG+GGG + chr2_3:20766147-20766166 None:intergenic 40.0%
CATGGTAAACCACCTATCAA+GGG + chr2_3:20766148-20766167 None:intergenic 40.0%
TCTCAGACGTTACAGCAAAA+AGG - chr2_3:20766342-20766361 Msa0283520:intron 40.0%
AACAATTTAGTCCACCTCTC+AGG + chr2_3:20766453-20766472 None:intergenic 40.0%
CCGAAAGGCTAAACTATTAG+GGG + chr2_3:20766513-20766532 None:intergenic 40.0%
! CCCCTAATAGTTTAGCCTTT+CGG - chr2_3:20766510-20766529 Msa0283520:intron 40.0%
CCCGAAAGGCTAAACTATTA+GGG + chr2_3:20766514-20766533 None:intergenic 40.0%
! CCCTAATAGTTTAGCCTTTC+GGG - chr2_3:20766511-20766530 Msa0283520:intron 40.0%
TCCCGAAAGGCTAAACTATT+AGG + chr2_3:20766515-20766534 None:intergenic 40.0%
TTATCTTCAGGATTCCATGG+AGG - chr2_3:20766711-20766730 Msa0283520:intron 40.0%
GGAGTTCAAAATTGCAGATC+GGG - chr2_3:20766886-20766905 Msa0283520:five_prime_UTR 40.0%
!!! GCTACTTGTTTTGAACTGGG+GGG + chr2_3:20762432-20762451 None:intergenic 45.0%
! TTCCAATAAGGTGCCAACCA+AGG - chr2_3:20762544-20762563 Msa0283520:intron 45.0%
ATCCTTGGTTGGCACCTTAT+TGG + chr2_3:20762549-20762568 None:intergenic 45.0%
AACCTTATCGATGCTTACGC+TGG - chr2_3:20762824-20762843 Msa0283520:CDS 45.0%
! TTGGAAAGGTCAGAGGTATG+AGG - chr2_3:20762853-20762872 Msa0283520:intron 45.0%
GTCACAGTCGAGAGAAGATT+AGG - chr2_3:20763056-20763075 Msa0283520:CDS 45.0%
GGTTCTGTCATTGCTACAGA+TGG - chr2_3:20763187-20763206 Msa0283520:CDS 45.0%
AAGGAGGATCAAGACATCTC+TGG + chr2_3:20763417-20763436 None:intergenic 45.0%
GAGATGTCTTGATCCTCCTT+TGG - chr2_3:20763417-20763436 Msa0283520:intron 45.0%
TCACTGTCTTCAGTCTCCAA+AGG + chr2_3:20763436-20763455 None:intergenic 45.0%
! ACCTGCCAAGTACTGTCTAA+GGG + chr2_3:20763644-20763663 None:intergenic 45.0%
! AACCTGCCAAGTACTGTCTA+AGG + chr2_3:20763645-20763664 None:intergenic 45.0%
GAAGAAGCTGCTATTCCTGA+CGG - chr2_3:20764126-20764145 Msa0283520:intron 45.0%
TCGTCTTCAGGATCATCTGA+CGG + chr2_3:20764186-20764205 None:intergenic 45.0%
CAAGTAGTTCTTCCAGCATG+TGG - chr2_3:20764286-20764305 Msa0283520:intron 45.0%
AGTTAATCCAAACCGGACCA+AGG - chr2_3:20764868-20764887 Msa0283520:intron 45.0%
AATGAAACCTTGGTCCGGTT+TGG + chr2_3:20764878-20764897 None:intergenic 45.0%
ATTGGGGTCCTGGAAAAAGA+CGG - chr2_3:20764969-20764988 Msa0283520:CDS 45.0%
! TCTCTTCTCCGTCTTTTTCC+AGG + chr2_3:20764980-20764999 None:intergenic 45.0%
GAGAAGAGAAAAGGAGTCTG+AGG - chr2_3:20764991-20765010 Msa0283520:CDS 45.0%
CAAAAACTTGGCGAAGCTTC+TGG + chr2_3:20765268-20765287 None:intergenic 45.0%
GACGCCCTTTCGAAAGAAAT+GGG - chr2_3:20765320-20765339 Msa0283520:CDS 45.0%
AATGGGACTTGATGCTGCAA+AGG - chr2_3:20765337-20765356 Msa0283520:CDS 45.0%
TGCAAATAACTCTGCGGAGA+TGG + chr2_3:20765432-20765451 None:intergenic 45.0%
ACAACATGTGCAGGAAGAAG+AGG - chr2_3:20765839-20765858 Msa0283520:intron 45.0%
ACCAGAAATACCTCCACACT+TGG - chr2_3:20765974-20765993 Msa0283520:intron 45.0%
CCAGAAATACCTCCACACTT+GGG - chr2_3:20765975-20765994 Msa0283520:intron 45.0%
!!! TTGCCATTTTCTCCCAAGTG+TGG + chr2_3:20765990-20766009 None:intergenic 45.0%
CTTGGGAGAAAATGGCAACA+AGG - chr2_3:20765992-20766011 Msa0283520:intron 45.0%
TGGTAAACCACCTATCAAGG+GGG + chr2_3:20766146-20766165 None:intergenic 45.0%
CCATGGTAAACCACCTATCA+AGG + chr2_3:20766149-20766168 None:intergenic 45.0%
CCTTGATAGGTGGTTTACCA+TGG - chr2_3:20766146-20766165 Msa0283520:intron 45.0%
ATAGGTGGTTTACCATGGAC+TGG - chr2_3:20766151-20766170 Msa0283520:intron 45.0%
TCTCAGCAGTGAAGAAAACG+AGG + chr2_3:20766205-20766224 None:intergenic 45.0%
ATGTCACGAATCATCCCGAA+AGG + chr2_3:20766528-20766547 None:intergenic 45.0%
TTTCGGGATGATTCGTGACA+TGG - chr2_3:20766527-20766546 Msa0283520:intron 45.0%
AACATCATCACTGACCTCCA+TGG + chr2_3:20766728-20766747 None:intergenic 45.0%
AAATTCCAACTCTGCTGCCT+CGG + chr2_3:20766812-20766831 None:intergenic 45.0%
CACGTGACTCAGAACACGTA+CGG + chr2_3:20761508-20761527 None:intergenic 50.0%
CGGAGGTTGCACAAATGTGT+CGG - chr2_3:20762502-20762521 Msa0283520:intron 50.0%
TACGCCTCCAGAGAAGAACA+AGG - chr2_3:20762771-20762790 Msa0283520:CDS 50.0%
!! CTCCAGCGTAAGCATCGATA+AGG + chr2_3:20762829-20762848 None:intergenic 50.0%
ATCGATGCTTACGCTGGAGA+AGG - chr2_3:20762830-20762849 Msa0283520:CDS 50.0%
ATGCTTACGCTGGAGAAGGT+TGG - chr2_3:20762834-20762853 Msa0283520:CDS 50.0%
TACGCTGGAGAAGGTTGGAA+AGG - chr2_3:20762839-20762858 Msa0283520:intron 50.0%
GAGAAGGTTGGAAAGGTCAG+AGG - chr2_3:20762846-20762865 Msa0283520:intron 50.0%
!! CCAGTTGGTGAATGGCATCA+CGG + chr2_3:20763138-20763157 None:intergenic 50.0%
CTGTCTTCAGTCTCCAAAGG+AGG + chr2_3:20763433-20763452 None:intergenic 50.0%
! CAAAACCAGCCTTGGTCTTC+AGG + chr2_3:20763557-20763576 None:intergenic 50.0%
AGGCAACAAACGCGCATCTT+GGG - chr2_3:20763609-20763628 Msa0283520:intron 50.0%
! CCTGCCAAGTACTGTCTAAG+GGG + chr2_3:20763643-20763662 None:intergenic 50.0%
TGGCTTTCTTCCTTCCTCTC+TGG + chr2_3:20764219-20764238 None:intergenic 50.0%
GAGAGGAAGGAAGAAAGCCA+TGG - chr2_3:20764219-20764238 Msa0283520:intron 50.0%
AGGAAGGAAGAAAGCCATGG+TGG - chr2_3:20764222-20764241 Msa0283520:intron 50.0%
! CTTCTGTGTTGATGCCACCA+TGG + chr2_3:20764239-20764258 None:intergenic 50.0%
CATGGTGGCATCAACACAGA+AGG - chr2_3:20764237-20764256 Msa0283520:intron 50.0%
GAATCCGGGGAAATAGCATG+TGG - chr2_3:20764387-20764406 Msa0283520:intron 50.0%
!! ACGACCACATGCTATTTCCC+CGG + chr2_3:20764394-20764413 None:intergenic 50.0%
GGGAAATAGCATGTGGTCGT+AGG - chr2_3:20764394-20764413 Msa0283520:intron 50.0%
GAAGATGAAGATTGGGGTCC+TGG - chr2_3:20764959-20764978 Msa0283520:CDS 50.0%
GCTTCCTCCAAAATCCGTGA+AGG - chr2_3:20765298-20765317 Msa0283520:CDS 50.0%
!! TTTCGAAAGGGCGTCCTTCA+CGG + chr2_3:20765315-20765334 None:intergenic 50.0%
GGACGCCCTTTCGAAAGAAA+TGG - chr2_3:20765319-20765338 Msa0283520:CDS 50.0%
!! CCCAAGTGTGGAGGTATTTC+TGG + chr2_3:20765978-20765997 None:intergenic 50.0%
! CCATTTTCTCCCAAGTGTGG+AGG + chr2_3:20765987-20766006 None:intergenic 50.0%
CCTCCACACTTGGGAGAAAA+TGG - chr2_3:20765984-20766003 Msa0283520:intron 50.0%
AGAAGATCTACCGTGGAGTG+TGG - chr2_3:20766119-20766138 Msa0283520:intron 50.0%
CTCTCAGGCAAGTTCTACAG+TGG + chr2_3:20766438-20766457 None:intergenic 50.0%
CACTGTAGAACTTGCCTGAG+AGG - chr2_3:20766436-20766455 Msa0283520:intron 50.0%
TGTAGAACTTGCCTGAGAGG+TGG - chr2_3:20766439-20766458 Msa0283520:intron 50.0%
TGCATTTGAAGGAGACTCCG+AGG - chr2_3:20766792-20766811 Msa0283520:intron 50.0%
GTCATCGTCACTCATCGCCA+AGG - chr2_3:20761723-20761742 Msa0283520:intron 55.0%
ATCGTCACTCATCGCCAAGG+TGG - chr2_3:20761726-20761745 Msa0283520:intron 55.0%
! GCTCGTTGCAGCTCCTTTTC+TGG + chr2_3:20763082-20763101 None:intergenic 55.0%
CCGTGATGCCATTCACCAAC+TGG - chr2_3:20763135-20763154 Msa0283520:CDS 55.0%
GCAGTTCCTCCTGAAGACCA+AGG - chr2_3:20763545-20763564 Msa0283520:intron 55.0%
TTCCTCCTGAAGACCAAGGC+TGG - chr2_3:20763549-20763568 Msa0283520:intron 55.0%
! AACCAGCCTTGGTCTTCAGG+AGG + chr2_3:20763554-20763573 None:intergenic 55.0%
GAGGCAACAAACGCGCATCT+TGG - chr2_3:20763608-20763627 Msa0283520:intron 55.0%
CCCCTTAGACAGTACTTGGC+AGG - chr2_3:20763640-20763659 Msa0283520:intron 55.0%
AGTAATGCAGCATCGCCGTC+AGG + chr2_3:20764144-20764163 None:intergenic 55.0%
! GCGTCCTTCACGGATTTTGG+AGG + chr2_3:20765305-20765324 None:intergenic 55.0%
!! AGGGCGTCCTTCACGGATTT+TGG + chr2_3:20765308-20765327 None:intergenic 55.0%
GAGGTGGAGAAGATCTACCG+TGG - chr2_3:20766112-20766131 Msa0283520:intron 55.0%
TCAAGGGGGTCCACACTCCA+CGG + chr2_3:20766132-20766151 None:intergenic 60.0%
GGAGTGTGGACCCCCTTGAT+AGG - chr2_3:20766133-20766152 Msa0283520:intron 60.0%
GTGTGGACCCCCTTGATAGG+TGG - chr2_3:20766136-20766155 Msa0283520:intron 60.0%
AGACTCCGAGGCAGCAGAGT+TGG - chr2_3:20766804-20766823 Msa0283520:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 20760948 20767178 20760948 ID=Msa0283520;Name=Msa0283520
chr2_3 mRNA 20760948 20767178 20760948 ID=Msa0283520-mRNA-1;Parent=Msa0283520;Name=Msa0283520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|0.9|0.81|11|194|710
chr2_3 exon 20760948 20761405 20760948 ID=Msa0283520-mRNA-1:exon:8217;Parent=Msa0283520-mRNA-1
chr2_3 exon 20762113 20762349 20762113 ID=Msa0283520-mRNA-1:exon:8216;Parent=Msa0283520-mRNA-1
chr2_3 exon 20762545 20762595 20762545 ID=Msa0283520-mRNA-1:exon:8215;Parent=Msa0283520-mRNA-1
chr2_3 exon 20762768 20762857 20762768 ID=Msa0283520-mRNA-1:exon:8214;Parent=Msa0283520-mRNA-1
chr2_3 exon 20762982 20763209 20762982 ID=Msa0283520-mRNA-1:exon:8213;Parent=Msa0283520-mRNA-1
chr2_3 exon 20763674 20764012 20763674 ID=Msa0283520-mRNA-1:exon:8212;Parent=Msa0283520-mRNA-1
chr2_3 exon 20764465 20764577 20764465 ID=Msa0283520-mRNA-1:exon:8211;Parent=Msa0283520-mRNA-1
chr2_3 exon 20764675 20764798 20764675 ID=Msa0283520-mRNA-1:exon:8210;Parent=Msa0283520-mRNA-1
chr2_3 exon 20764898 20765063 20764898 ID=Msa0283520-mRNA-1:exon:8209;Parent=Msa0283520-mRNA-1
chr2_3 exon 20765259 20765802 20765259 ID=Msa0283520-mRNA-1:exon:8208;Parent=Msa0283520-mRNA-1
chr2_3 exon 20766864 20767178 20766864 ID=Msa0283520-mRNA-1:exon:8207;Parent=Msa0283520-mRNA-1
chr2_3 five_prime_UTR 20766864 20767178 20766864 ID=Msa0283520-mRNA-1:five_prime_utr;Parent=Msa0283520-mRNA-1
chr2_3 five_prime_UTR 20765780 20765802 20765780 ID=Msa0283520-mRNA-1:five_prime_utr;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20765259 20765779 20765259 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20764898 20765063 20764898 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20764675 20764798 20764675 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20764465 20764577 20764465 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20763674 20764012 20763674 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20762982 20763209 20762982 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20762768 20762857 20762768 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20762545 20762595 20762545 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20762113 20762349 20762113 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 CDS 20761142 20761405 20761142 ID=Msa0283520-mRNA-1:cds;Parent=Msa0283520-mRNA-1
chr2_3 three_prime_UTR 20760948 20761141 20760948 ID=Msa0283520-mRNA-1:three_prime_utr;Parent=Msa0283520-mRNA-1
Gene Sequence

>Msa0283520

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAAGACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGCTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGAACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAAGGAGGAAAAACTTCTCTTAATCATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGAAAACATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAAACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATTGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>Msa0283520

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKDRLKSKSHKLGGCTNVSVKTATDSSNKVPTKDSSNKRLIVEQSLHKTDRNSTKIQGGKTSLNHDRKGEIDVGDQEENIQKRKRRRKKKRQKHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSGSDEVHLNEPSIMYVPIAELREKVK*