AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001780 MtrunA17_Chr8g0391771 98.342 603 10 0 1 603 1 603 0.0 1196
Msa0001780 MtrunA17_Chr1g0161371 83.085 603 97 2 1 603 1 598 0.0 964
Msa0001780 MtrunA17_Chr8g0344311 83.115 610 93 5 1 606 1 604 0.0 946
Msa0001780 MtrunA17_Chr4g0076251 49.540 543 233 12 56 573 25 551 6.76e-147 438
Msa0001780 MtrunA17_Chr2g0290411 47.993 548 253 9 57 587 13 545 9.14e-145 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001780 AT1G24764.1 75.041 617 133 7 1 597 1 616 0.0 889
Msa0001780 AT1G68060.1 75.980 612 125 10 1 597 1 605 0.0 887
Msa0001780 AT1G24764.3 75.041 617 133 7 1 597 60 675 0.0 886
Msa0001780 AT1G14840.1 74.579 594 128 10 20 603 11 591 0.0 837
Msa0001780 AT2G01750.2 75.648 579 129 6 30 604 47 617 0.0 821
Msa0001780 AT2G01750.1 75.606 578 129 6 30 603 47 616 0.0 819
Msa0001780 AT1G14840.2 72.222 594 127 11 20 603 11 576 0.0 795
Msa0001780 AT1G24764.2 79.310 464 92 3 137 597 1 463 0.0 730
Msa0001780 AT4G17220.1 46.692 529 234 7 57 578 6 493 1.50e-134 404

Find 293 sgRNAs with CRISPR-Local

Find 543 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGCACTTGAGTTTATT+TGG 0.093927 1_1:-3490889 None:intergenic
AGAAACATACCTGTTAATTT+TGG 0.140305 1_1:+3492374 Msa0001780:five_prime_UTR
TTATTGGCAGATTATTAATT+TGG 0.169836 1_1:-3490268 None:intergenic
CTATGAGTTGAATTGGTTTA+TGG 0.173314 1_1:+3489985 Msa0001780:five_prime_UTR
TGTTGATCTACAGGAAAATT+TGG 0.180383 1_1:+3492668 Msa0001780:five_prime_UTR
GACGGTTTCCGGATCGTTTA+AGG 0.181490 1_1:+3493351 Msa0001780:CDS
CAGGAAAATTTGGCTAAAAT+TGG 0.183857 1_1:+3492678 Msa0001780:five_prime_UTR
TGAAGAAAACTTGGTTATTT+TGG 0.192587 1_1:-3488105 None:intergenic
TTACAGTGATAATGTGTATT+TGG 0.203910 1_1:-3491226 None:intergenic
CCGGTGCCGTTGACGGTTTC+CGG 0.215030 1_1:+3493340 Msa0001780:CDS
CAAGTTGTACTTATCATTTC+CGG 0.223925 1_1:+3490661 Msa0001780:five_prime_UTR
TTTCATTTGATTAGTGTTAA+AGG 0.224255 1_1:+3492736 Msa0001780:five_prime_UTR
ATGTGTAGTTGTTTATAAAT+TGG 0.226138 1_1:-3490123 None:intergenic
GTGCTAAAAGGTTGACAAAA+TGG 0.237724 1_1:+3492501 Msa0001780:five_prime_UTR
ACTGACAATATTAATATAAA+TGG 0.238855 1_1:-3488907 None:intergenic
CCAGGAGGAAAACAAAATTT+TGG 0.247069 1_1:+3495003 Msa0001780:intron
CTTTCTCTGTCACACAGTTT+TGG 0.249206 1_1:+3492966 Msa0001780:five_prime_UTR
TCCGGTGGGTTATTACTTGC+TGG 0.251981 1_1:-3492643 None:intergenic
AGGAGTAAAATTCTTCTAAA+TGG 0.256803 1_1:+3495969 Msa0001780:CDS
AAGGTAATGATGTCAAAATT+TGG 0.259046 1_1:+3489893 Msa0001780:five_prime_UTR
TTGTTTGTTAAGAGGGTTAT+AGG 0.263318 1_1:+3490531 Msa0001780:five_prime_UTR
TGTTTCATACTACTAGTTAA+TGG 0.264351 1_1:-3493153 None:intergenic
TGTGTAGTTGTTTATAAATT+GGG 0.266052 1_1:-3490122 None:intergenic
ACAAAGAGGAAAACAATAAT+TGG 0.267719 1_1:+3496039 Msa0001780:CDS
CAATAATTGGAAAGGAAGTT+TGG 0.278285 1_1:+3496052 Msa0001780:CDS
CCTCTAGTTCCCTGACAGTT+TGG 0.279717 1_1:-3495069 None:intergenic
CTCTAGTTCCCTGACAGTTT+GGG 0.283034 1_1:-3495068 None:intergenic
GGTAAACATGTTTGTGATTT+GGG 0.289435 1_1:-3492777 None:intergenic
CATTCCATTCCAAAATTAAC+AGG 0.291010 1_1:-3492383 None:intergenic
GGAGAGGACGCAATTTGATT+TGG 0.292054 1_1:-3487983 None:intergenic
TTCCTGTAGATCAACATTTC+CGG 0.292130 1_1:-3492661 None:intergenic
CTAGAGGAGGCTGTCCTTGC+AGG 0.298621 1_1:+3495085 Msa0001780:CDS
ATCCAAGGGATCGGGCAATT+TGG 0.299457 1_1:-3489257 None:intergenic
TACTCTGTTTGCTGTTACCT+TGG 0.304652 1_1:-3495304 None:intergenic
CTTTGTGTATTCGTAGCATT+TGG 0.305525 1_1:+3493225 Msa0001780:five_prime_UTR
ATTATGAAGATTATATCTTA+TGG 0.312575 1_1:+3491048 Msa0001780:five_prime_UTR
AAGAACCGTATGACTGGTAT+AGG 0.314516 1_1:-3490719 None:intergenic
GCTCAGCAACAGCTTGTTAC+TGG 0.317278 1_1:+3496489 Msa0001780:CDS
AAGCATCATAAACTGGTTAT+TGG 0.318561 1_1:-3490284 None:intergenic
AGGTAATGATGTCAAAATTT+GGG 0.321356 1_1:+3489894 Msa0001780:five_prime_UTR
CAGATGTATAAAACTCAATT+AGG 0.323374 1_1:-3490313 None:intergenic
TGCCTCAACTTCCATAGCTT+TGG 0.325019 1_1:-3496349 None:intergenic
AGCCATTCTAGCTCCTTTAG+AGG 0.326419 1_1:+3494568 Msa0001780:CDS
GGACCGTCTTACGAAATCTA+AGG 0.330608 1_1:+3494766 Msa0001780:CDS
TGCTCTCTATTTCAAGAGCT+TGG 0.331164 1_1:-3490999 None:intergenic
GGATAAGATCCCACAAAATC+TGG 0.334701 1_1:+3492523 Msa0001780:five_prime_UTR
CGCAAACTAGATTTAGTTCA+AGG 0.334874 1_1:+3497057 Msa0001780:CDS
GATTAGTGTTAAAGGGTAGT+AGG 0.339953 1_1:+3492744 Msa0001780:five_prime_UTR
CATGAACTTGCTTCATGGTT+CGG 0.340177 1_1:+3493438 Msa0001780:CDS
AGACATACCAGAACAAACTA+TGG 0.344102 1_1:-3489084 None:intergenic
ATATCCAAACCCAACTCTAA+TGG 0.348727 1_1:+3495828 Msa0001780:CDS
TGTTGCTGAGCACTGTTCAT+AGG 0.349019 1_1:-3496477 None:intergenic
TGGTAAACATGTTTGTGATT+TGG 0.353110 1_1:-3492778 None:intergenic
GAGAGGACGCAATTTGATTT+GGG 0.356078 1_1:-3487982 None:intergenic
GCCTTCCCGACGACAATCCC+TGG 0.358957 1_1:+3495791 Msa0001780:CDS
GAACATCATCCTTTCAAATA+AGG 0.359369 1_1:+3495865 Msa0001780:CDS
TCTATGTCTATGAGTTGAAT+TGG 0.362541 1_1:+3489978 Msa0001780:five_prime_UTR
ATCATCCACCATGGAGGCCT+TGG 0.362971 1_1:-3494834 None:intergenic
GATATAGAGGATAATGTTCC+AGG 0.366472 1_1:+3496104 Msa0001780:CDS
GCATTCGATGAGACCTAGTT+TGG 0.367879 1_1:+3493402 Msa0001780:CDS
TTCCTGTTGTCATGCTTGCT+TGG 0.368042 1_1:+3491115 Msa0001780:five_prime_UTR
TCTACTAATGGCAAGTCATT+TGG 0.371972 1_1:-3496083 None:intergenic
TGAAGAGCGACGATTCTTGC+AGG 0.372497 1_1:+3495392 Msa0001780:CDS
CGAGTAGAGTATTGTGAAAC+TGG 0.373033 1_1:+3488936 Msa0001780:five_prime_UTR
TTCATTTGATTAGTGTTAAA+GGG 0.378723 1_1:+3492737 Msa0001780:five_prime_UTR
TCGTCTGAGTGGTTTCGTTT+TGG 0.381626 1_1:+3493252 Msa0001780:five_prime_UTR
GGGAGAGATGCAGCAACTTC+GGG 0.383230 1_1:+3495531 Msa0001780:intron
TCTCCTTTCGTGCTTCTGTT+TGG 0.386506 1_1:-3488155 None:intergenic
GGCCATCTCGGCGGTTGTGG+TGG 0.390680 1_1:-3488074 None:intergenic
CCGGTGGGTTATTACTTGCT+GGG 0.391671 1_1:-3492642 None:intergenic
AATATGTTCCAAGTTTCAAA+TGG 0.392501 1_1:+3497109 Msa0001780:CDS
TGAAGCTGAAAGGACTGTTC+AGG 0.393847 1_1:+3494802 Msa0001780:CDS
CCACGGTATCTCAAAGTGTT+TGG 0.393995 1_1:-3491144 None:intergenic
AAACCCATTAGAGTTGGGTT+TGG 0.396024 1_1:-3495832 None:intergenic
GAGTTCATGAACTTGCTTCA+TGG 0.400786 1_1:+3493433 Msa0001780:CDS
GAAGAATTGTCGAAGGTAGA+TGG 0.401031 1_1:+3494297 Msa0001780:CDS
ATTGCACAAATATTAACCTT+GGG 0.402297 1_1:-3490035 None:intergenic
GTCAAAATTTGGGTTGCTAC+TGG 0.404026 1_1:+3489904 Msa0001780:five_prime_UTR
GGTTCACCCATAGTTTGTTC+TGG 0.406738 1_1:+3489077 Msa0001780:five_prime_UTR
GCTCTCTATTTCAAGAGCTT+GGG 0.407206 1_1:-3490998 None:intergenic
AAACTTGGAACATATTCAAC+AGG 0.414806 1_1:-3497102 None:intergenic
ATTAGTGTTAAAGGGTAGTA+GGG 0.415429 1_1:+3492745 Msa0001780:five_prime_UTR
TTATCCTCTATATCTACTAA+TGG 0.416061 1_1:-3496095 None:intergenic
TGGTTCGGATCCAGTGAAAC+TGG 0.417554 1_1:+3493453 Msa0001780:CDS
TATCCAAACCCAACTCTAAT+GGG 0.418318 1_1:+3495829 Msa0001780:CDS
TGTTCAGGTTGCCTTGGCCA+AGG 0.418461 1_1:+3494817 Msa0001780:CDS
CGACTTGAGAATGATGTTAG+AGG 0.418672 1_1:+3493484 Msa0001780:CDS
AACCAAATTGCCCGATCCCT+TGG 0.420954 1_1:+3489255 Msa0001780:five_prime_UTR
CTTTAGTTCTTTCAGAAGAC+TGG 0.425602 1_1:-3496016 None:intergenic
AAAAGCTCACCCAAACTGTC+AGG 0.427752 1_1:+3495059 Msa0001780:CDS
CCTTTCAACAAGCTTTGAAA+AGG 0.429422 1_1:-3489767 None:intergenic
TCAAGATGATAACAGAGCTT+TGG 0.430655 1_1:+3494745 Msa0001780:CDS
ACAGGCCATCTCGGCGGTTG+TGG 0.435391 1_1:-3488077 None:intergenic
GTCAGAAACCCATTAGAGTT+GGG 0.435909 1_1:-3495837 None:intergenic
GGTGACGCCGGTGCCGTTGA+CGG 0.437292 1_1:+3493333 Msa0001780:CDS
CATACAAAAGAAAGGTTTGA+AGG 0.439621 1_1:+3492326 Msa0001780:five_prime_UTR
TAGAACACCCATTTGAAACT+TGG 0.440115 1_1:-3497117 None:intergenic
TGCCTTGGCCAAGGCCTCCA+TGG 0.440738 1_1:+3494826 Msa0001780:CDS
TGAGTTTGTGTATGAATGAA+TGG 0.447298 1_1:-3493009 None:intergenic
CTTCACATTGCTGAAACGCT+TGG 0.448038 1_1:-3496451 None:intergenic
GAGCTACAAGCATCATAAAC+TGG 0.449759 1_1:-3490291 None:intergenic
TGCTAAAAGGTTGACAAAAT+GGG 0.450538 1_1:+3492502 Msa0001780:five_prime_UTR
CTTCTGTTTGGATAGAAAGA+TGG 0.458886 1_1:-3488143 None:intergenic
TGTGATGTTTGTTTGTTAAG+AGG 0.459692 1_1:+3490523 Msa0001780:five_prime_UTR
TGATAATGAGTTTGATAACA+TGG 0.461490 1_1:-3492912 None:intergenic
GTGATGTTTGTTTGTTAAGA+GGG 0.462488 1_1:+3490524 Msa0001780:five_prime_UTR
AGGGAGAGATGCAGCAACTT+CGG 0.463109 1_1:+3495530 Msa0001780:intron
CGATTAAGCTCCAGTTTCAC+TGG 0.465244 1_1:-3493463 None:intergenic
TTTCCCTTCCTTAAACGATC+CGG 0.468302 1_1:-3493359 None:intergenic
TAAGAACAAAATAGGATAGC+AGG 0.468651 1_1:-3490809 None:intergenic
GGAGCTAGAATGGCTTCTAT+AGG 0.468769 1_1:-3494560 None:intergenic
CTTGCCATTAGTAGATATAG+AGG 0.469171 1_1:+3496091 Msa0001780:CDS
CTTGTAGAGGTGTTATAAGA+AGG 0.469849 1_1:-3492809 None:intergenic
CGTCGGCGTAGGATAGCAAA+TGG 0.469860 1_1:-3492839 None:intergenic
TTGTTGCAGAATGAAAATAT+AGG 0.470080 1_1:-3489013 None:intergenic
TAAATGGAAAAGGACTTTCC+TGG 0.471359 1_1:-3488891 None:intergenic
GAAGCACGAAAGGAGATGAT+TGG 0.472531 1_1:+3488162 Msa0001780:five_prime_UTR
AGAAGCTTTGTCGCAGGCAT+TGG 0.473465 1_1:-3492435 None:intergenic
AGCATTCTTCAAAATTGAGC+TGG 0.473860 1_1:-3495901 None:intergenic
GTTGCTGAGCACTGTTCATA+GGG 0.474288 1_1:-3496476 None:intergenic
AGCCAAGCAAGCATGACAAC+AGG 0.475314 1_1:-3491117 None:intergenic
TATTGCACAAATATTAACCT+TGG 0.475544 1_1:-3490036 None:intergenic
TTAAGAGGGTTATAGGCTAA+AGG 0.476289 1_1:+3490538 Msa0001780:five_prime_UTR
CTGTAGTAGTGGCTAATGAA+TGG 0.479204 1_1:+3495328 Msa0001780:CDS
CACCGGAAATGTTGATCTAC+AGG 0.481841 1_1:+3492659 Msa0001780:five_prime_UTR
GTCGGCGTAGGATAGCAAAT+GGG 0.483006 1_1:-3492838 None:intergenic
AATATTAATATAAATGGAAA+AGG 0.483443 1_1:-3488901 None:intergenic
GTATGATTTGCTGCAGAAAG+AGG 0.486051 1_1:+3496133 Msa0001780:CDS
GTGTAGTTGTTTATAAATTG+GGG 0.488858 1_1:-3490121 None:intergenic
AGGGAAAATGTGTTAGCAAT+GGG 0.489064 1_1:+3495769 Msa0001780:CDS
TGATGGTGGCTCTAGGTCAC+TGG 0.489643 1_1:+3495944 Msa0001780:CDS
CATACGGTTCTTTCTTTGAG+AGG 0.490773 1_1:+3490730 Msa0001780:five_prime_UTR
AGTCAGAAACCCATTAGAGT+TGG 0.493992 1_1:-3495838 None:intergenic
TGCTAGGAAACTTCGTTCAA+AGG 0.494848 1_1:-3488199 None:intergenic
CACCATGGAGGCCTTGGCCA+AGG 0.496680 1_1:-3494828 None:intergenic
GTCCTAGTGTTGAGGAAAGC+TGG 0.499161 1_1:+3496155 Msa0001780:CDS
AAGGACTGTTCAGGTTGCCT+TGG 0.499232 1_1:+3494811 Msa0001780:CDS
AGCCTCTAAAGGAGCTAGAA+TGG 0.499413 1_1:-3494570 None:intergenic
TTATTATTATTAATCAGAAA+AGG 0.501842 1_1:+3489874 Msa0001780:five_prime_UTR
GATGGTGGTGGCGGAAGCTG+TGG 0.502450 1_1:-3488044 None:intergenic
AACTCATCCGCATCCAAACT+AGG 0.505439 1_1:-3493415 None:intergenic
TATATGCTGCAAGTTAAAAG+TGG 0.506924 1_1:-3490626 None:intergenic
AAGTAAGGACACTTTACAGC+TGG 0.507910 1_1:-3492581 None:intergenic
AGAACCGTATGACTGGTATA+GGG 0.508830 1_1:-3490718 None:intergenic
TTCAATGTTGATGTCACTGT+TGG 0.509128 1_1:+3488834 Msa0001780:five_prime_UTR
GGGAGAAACGATGGTGGTGG+CGG 0.511151 1_1:-3488053 None:intergenic
CTCAGCAACAGCTTGTTACT+GGG 0.513643 1_1:+3496490 Msa0001780:CDS
TTGAGGCAAAGAAGATGCGA+AGG 0.515230 1_1:+3496364 Msa0001780:CDS
CAAAGAAAGAACCGTATGAC+TGG 0.517875 1_1:-3490725 None:intergenic
CCGGAAACCGTCAACGGCAC+CGG 0.518335 1_1:-3493340 None:intergenic
GCAGATTGCATACAAAAGAA+AGG 0.518687 1_1:+3492318 Msa0001780:intron
TTCCACCCAGGGATTGTCGT+CGG 0.518701 1_1:-3495797 None:intergenic
GCCATCTCGGCGGTTGTGGT+GGG 0.518789 1_1:-3488073 None:intergenic
CTTAATCTACACAAATCTGC+AGG 0.518893 1_1:+3491084 Msa0001780:five_prime_UTR
AGTAGGATATGCCATTGCAC+TGG 0.519240 1_1:+3489043 Msa0001780:five_prime_UTR
AGGCTGAACTCAAGCTTGCT+CGG 0.519693 1_1:+3494588 Msa0001780:CDS
AGCTTGAGTTCAGCCTCTAA+AGG 0.520147 1_1:-3494581 None:intergenic
GGCATCAGTGAGATCGGCGA+TGG 0.521449 1_1:+3493273 Msa0001780:exon
GATAATGAGTTTGATAACAT+GGG 0.522679 1_1:-3492911 None:intergenic
TCCACCCAGGGATTGTCGTC+GGG 0.522810 1_1:-3495796 None:intergenic
ATATGTTCCAAGTTTCAAAT+GGG 0.526203 1_1:+3497110 Msa0001780:CDS
ATCTTCGCATTTGTCATCGT+CGG 0.527007 1_1:-3490062 None:intergenic
GACTGGTTAAACGACGAACT+TGG 0.527055 1_1:-3495999 None:intergenic
ACATGTTTGTGATTTGGGAG+AGG 0.527943 1_1:-3492772 None:intergenic
TATTAATCGCGGCACTTCAG+AGG 0.534381 1_1:+3495749 Msa0001780:CDS
GGAAAGTGGTTTACTTTGTG+AGG 0.535523 1_1:+3492544 Msa0001780:five_prime_UTR
GCATAGACTGAAGGTGGCAG+AGG 0.535525 1_1:+3495033 Msa0001780:CDS
GGATACATTGACCAAAGCTA+TGG 0.536322 1_1:+3496338 Msa0001780:CDS
AAGGGTCCATGCTGCTCAGA+AGG 0.536406 1_1:+3494523 Msa0001780:CDS
GAAACGAGCCCGGAGTTGCT+AGG 0.537481 1_1:-3488215 None:intergenic
CCCAGGGATTGTCGTCGGGA+AGG 0.537826 1_1:-3495792 None:intergenic
CGAAGTTTCCTAGCAACTCC+GGG 0.538653 1_1:+3488207 Msa0001780:five_prime_UTR
GCGAAGGGAGGTAGCTGTCA+TGG 0.538751 1_1:+3496380 Msa0001780:CDS
TTTGAGATACCGTGGGATGA+AGG 0.539630 1_1:+3491152 Msa0001780:five_prime_UTR
CTTATAACACCTCTACAAGA+AGG 0.540610 1_1:+3492813 Msa0001780:five_prime_UTR
CACAGAGGACCTTATTTGAA+AGG 0.541508 1_1:-3495874 None:intergenic
GAAACAGATTGAGATTTGCC+AGG 0.542161 1_1:+3494883 Msa0001780:CDS
CAGCTGAAGCTACTCTTCGA+AGG 0.542966 1_1:+3494504 Msa0001780:CDS
ATCCCACAAAATCTGGAAAG+TGG 0.543414 1_1:+3492530 Msa0001780:five_prime_UTR
TCCCACCACAACCGCCGAGA+TGG 0.543502 1_1:+3488072 Msa0001780:five_prime_UTR
GAAAGGTTTGAAGGGAGGAA+AGG 0.545087 1_1:+3492335 Msa0001780:five_prime_UTR
CTACGCCGACGAACATTGCA+TGG 0.545731 1_1:+3492851 Msa0001780:five_prime_UTR
CTGTAGATCAACATTTCCGG+TGG 0.546457 1_1:-3492658 None:intergenic
CGGTTCCATTCCCACGTCAC+CGG 0.547668 1_1:-3493305 None:intergenic
TTGCAGCAGCACCGCCTGCA+AGG 0.549043 1_1:-3495099 None:intergenic
CATGCAATGTTCGTCGGCGT+AGG 0.550422 1_1:-3492850 None:intergenic
ATTAATCGCGGCACTTCAGA+GGG 0.552798 1_1:+3495750 Msa0001780:CDS
TGAAAGAACTAAAGACAAAG+AGG 0.552858 1_1:+3496025 Msa0001780:CDS
CTTCCTTAGATTTCGTAAGA+CGG 0.553947 1_1:-3494769 None:intergenic
GAGGGAAAATGTGTTAGCAA+TGG 0.554350 1_1:+3495768 Msa0001780:CDS
TTGGCTGAAACAGGCCATCT+CGG 0.554647 1_1:-3488086 None:intergenic
GGTGGGAGAAACGATGGTGG+TGG 0.555538 1_1:-3488056 None:intergenic
CACAACTTAGATCATGTCTC+CGG 0.556797 1_1:-3490680 None:intergenic
CAGCACTTCTTGAAGCTGAA+AGG 0.556835 1_1:+3494792 Msa0001780:CDS
AGGTGTTATAAGAAGGTACT+TGG 0.557323 1_1:-3492802 None:intergenic
AGCAAATCATACAAAACTCC+TGG 0.558030 1_1:-3496122 None:intergenic
CCTTCCCGACGACAATCCCT+GGG 0.558801 1_1:+3495792 Msa0001780:CDS
GTTATAAGAAGGTACTTGGC+TGG 0.559633 1_1:-3492798 None:intergenic
TTGAGGTGATGAAGAAAACT+TGG 0.560501 1_1:-3488114 None:intergenic
TCGGGAGTTGGCTCGTGCCA+AGG 0.564508 1_1:+3495287 Msa0001780:CDS
GTAGGATATGCCATTGCACT+GGG 0.566151 1_1:+3489044 Msa0001780:five_prime_UTR
CATTTGGATGTTCGTCTGAG+TGG 0.567631 1_1:+3493241 Msa0001780:five_prime_UTR
TATGCTATCTGTTCCACCCA+GGG 0.568259 1_1:-3495808 None:intergenic
AGATAAAGACGATGCCATTG+AGG 0.568782 1_1:+3496202 Msa0001780:CDS
TTTCCGGATCGTTTAAGGAA+GGG 0.568827 1_1:+3493356 Msa0001780:CDS
AAACAGAGTAGCTGTAGTAG+TGG 0.569015 1_1:+3495317 Msa0001780:CDS
GGAACCGACGGTGGTGACGC+CGG 0.569709 1_1:+3493321 Msa0001780:CDS
AGAGATTGTTGAAACGAGCC+CGG 0.570025 1_1:-3488225 None:intergenic
ACGAAGTTTCCTAGCAACTC+CGG 0.570411 1_1:+3488206 Msa0001780:five_prime_UTR
ATAGAAGAAGAATATACTCT+AGG 0.570708 1_1:-3489845 None:intergenic
GAGGAAAACAATAATTGGAA+AGG 0.570719 1_1:+3496044 Msa0001780:CDS
TGGTTAAACGACGAACTTGG+TGG 0.570824 1_1:-3495996 None:intergenic
GAGTGATTATGATTAAAGAA+AGG 0.572435 1_1:-3493056 None:intergenic
GTTTCCGGATCGTTTAAGGA+AGG 0.572546 1_1:+3493355 Msa0001780:CDS
TTGAAAGGAAAATCATTGTG+AGG 0.572732 1_1:+3489782 Msa0001780:five_prime_UTR
GGAGGTAGCTGTCATGGAGA+AGG 0.573439 1_1:+3496386 Msa0001780:CDS
CAATGCCTTCGTAGTCATGT+AGG 0.577152 1_1:-3489930 None:intergenic
GACCAAAGCTATGGAAGTTG+AGG 0.577831 1_1:+3496347 Msa0001780:CDS
GGAGGTGGCTGCAATGCGCG+TGG 0.579154 1_1:+3496407 Msa0001780:CDS
TATCCAAACAGAAGCACGAA+AGG 0.580390 1_1:+3488152 Msa0001780:five_prime_UTR
AACGATCCGGAAACCGTCAA+CGG 0.580826 1_1:-3493346 None:intergenic
ATACAAAAGAAAGGTTTGAA+GGG 0.581074 1_1:+3492327 Msa0001780:five_prime_UTR
GATGAGACCTAGTTTGGATG+CGG 0.582124 1_1:+3493408 Msa0001780:CDS
AGCTGTGGGAAGAGAAGCTA+CGG 0.582533 1_1:-3488029 None:intergenic
AAGTTAAAAGTGGAAATGAC+AGG 0.583421 1_1:-3490616 None:intergenic
AACTGTCAGGGAACTAGAGG+AGG 0.584056 1_1:+3495072 Msa0001780:CDS
TCTGCAACAAAGAAATCAGT+AGG 0.584574 1_1:+3489026 Msa0001780:five_prime_UTR
AGCTGTCATGGAGAAGGAGG+TGG 0.586105 1_1:+3496392 Msa0001780:CDS
GCTAGAATGGCTTCTATAGG+AGG 0.588125 1_1:-3494557 None:intergenic
GAGGAGGCTGTCCTTGCAGG+CGG 0.590371 1_1:+3495088 Msa0001780:CDS
CGGTGGGTTATTACTTGCTG+GGG 0.591104 1_1:-3492641 None:intergenic
TGCACAAATATTAACCTTGG+GGG 0.591706 1_1:-3490033 None:intergenic
AAATAATAATAATAAATACA+AGG 0.592774 1_1:-3490921 None:intergenic
CGTCATCCTTCTGAGCAGCA+TGG 0.593027 1_1:-3494529 None:intergenic
ATTCTTCAAAATTGAGCTGG+AGG 0.593608 1_1:-3495898 None:intergenic
AAATGGGGCCCTTCTTGTAG+AGG 0.593712 1_1:-3492822 None:intergenic
CCAAACACTTTGAGATACCG+TGG 0.594417 1_1:+3491144 Msa0001780:five_prime_UTR
GGTAGCTGTCATGGAGAAGG+AGG 0.598076 1_1:+3496389 Msa0001780:CDS
TGATGAAAAGAAAGCATCGA+TGG 0.599203 1_1:+3494469 Msa0001780:CDS
AATACTAGAAGCTTTGTCGC+AGG 0.599299 1_1:-3492441 None:intergenic
ATAATGAGTTTGATAACATG+GGG 0.599910 1_1:-3492910 None:intergenic
ATTGCACTGGGACTGCTACA+CGG 0.601558 1_1:+3489056 Msa0001780:five_prime_UTR
AGGACGCAATTTGATTTGGG+AGG 0.601735 1_1:-3487979 None:intergenic
GCCCAGAAAATCTAATGTGA+CGG 0.601913 1_1:+3489230 Msa0001780:intron
TACTCCCTATACCAGTCATA+CGG 0.604212 1_1:+3490714 Msa0001780:five_prime_UTR
GACATACCAGAACAAACTAT+GGG 0.605969 1_1:-3489083 None:intergenic
TTATAACACCTCTACAAGAA+GGG 0.607311 1_1:+3492814 Msa0001780:five_prime_UTR
AGCTGAAGCTACTCTTCGAA+GGG 0.608327 1_1:+3494505 Msa0001780:CDS
GGACAGAATGCATAGACTGA+AGG 0.608459 1_1:+3495024 Msa0001780:CDS
CCCAGCAAGTAATAACCCAC+CGG 0.610384 1_1:+3492642 Msa0001780:five_prime_UTR
CAGAATGCATAGACTGAAGG+TGG 0.610746 1_1:+3495027 Msa0001780:CDS
TTGACAGCTCCTTCATCCCA+CGG 0.610966 1_1:-3491161 None:intergenic
GCACTCCATGCAATGTTCGT+CGG 0.610987 1_1:-3492856 None:intergenic
GTGTAGCAGTCCCAGTGCAA+TGG 0.611380 1_1:-3489054 None:intergenic
ACTCAAGCTTGCTCGGCAAG+AGG 0.612136 1_1:+3494595 Msa0001780:CDS
TAGGTTACTCTTTCAGCACA+TGG 0.613475 1_1:-3488994 None:intergenic
GGTTGTGGTGGGAGAAACGA+TGG 0.615830 1_1:-3488062 None:intergenic
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 1_1:+3494829 Msa0001780:CDS
TTGCACAAATATTAACCTTG+GGG 0.619105 1_1:-3490034 None:intergenic
GGCACCGGCGTCACCACCGT+CGG 0.624819 1_1:-3493325 None:intergenic
GTGGCTCTAGGTCACTGGAA+AGG 0.628966 1_1:+3495949 Msa0001780:CDS
CAAAAGAAAGGTTTGAAGGG+AGG 0.629450 1_1:+3492330 Msa0001780:five_prime_UTR
CCAAACTGTCAGGGAACTAG+AGG 0.629519 1_1:+3495069 Msa0001780:CDS
GACCAGCTTTCCTCAACACT+AGG 0.630129 1_1:-3496157 None:intergenic
AGATTATATCAAGAGCGCGA+TGG 0.633109 1_1:+3490081 Msa0001780:five_prime_UTR
TGAAAGGAAAATCATTGTGA+GGG 0.637647 1_1:+3489783 Msa0001780:five_prime_UTR
GCTTACTGAAGAATTGTCGA+AGG 0.641029 1_1:+3494290 Msa0001780:intron
ATATGCTATCTGTTCCACCC+AGG 0.641087 1_1:-3495809 None:intergenic
CAAACACTTTGAGATACCGT+GGG 0.641234 1_1:+3491145 Msa0001780:five_prime_UTR
AAAGCTCACCCAAACTGTCA+GGG 0.642656 1_1:+3495060 Msa0001780:CDS
AGAAAGAGGTCCTAGTGTTG+AGG 0.642915 1_1:+3496147 Msa0001780:CDS
TCGGCGTAGGATAGCAAATG+GGG 0.649349 1_1:-3492837 None:intergenic
TGTGGTGGGAGAAACGATGG+TGG 0.650257 1_1:-3488059 None:intergenic
GGCAAAGAAGATGCGAAGGG+AGG 0.650499 1_1:+3496368 Msa0001780:CDS
TGAGGCAAAGAAGATGCGAA+GGG 0.652267 1_1:+3496365 Msa0001780:CDS
ATGGTGGTGGCGGAAGCTGT+GGG 0.653166 1_1:-3488043 None:intergenic
AGCTGTCAAAGTGTCTGATG+AGG 0.656742 1_1:+3491175 Msa0001780:five_prime_UTR
AAGTGATGCCTGTAAAACAA+TGG 0.658150 1_1:+3495367 Msa0001780:CDS
TGACGTGGGAATGGAACCGA+CGG 0.658829 1_1:+3493309 Msa0001780:CDS
TGTAGATCAACATTTCCGGT+GGG 0.659075 1_1:-3492657 None:intergenic
TTAGTGTTAAAGGGTAGTAG+GGG 0.659177 1_1:+3492746 Msa0001780:five_prime_UTR
TAGAAAGATGGATCATGTTG+AGG 0.661494 1_1:-3488131 None:intergenic
GCTGAAACAGGCCATCTCGG+CGG 0.682767 1_1:-3488083 None:intergenic
AATTGAGCTGGAGGACACAG+AGG 0.682767 1_1:-3495889 None:intergenic
ATTCTAATACTTGATAGACC+AGG 0.683923 1_1:+3488873 Msa0001780:five_prime_UTR
TTGGTGTTTCAGCTGCATTG+TGG 0.685944 1_1:-3492416 None:intergenic
TGCACATGCAGAATATAGTG+AGG 0.686348 1_1:-3490572 None:intergenic
TTGGAGATCATCCACCATGG+AGG 0.693889 1_1:-3494840 None:intergenic
GGCTTCCTACATGACTACGA+AGG 0.696219 1_1:+3489925 Msa0001780:five_prime_UTR
TCCCGACGACAATCCCTGGG+TGG 0.703158 1_1:+3495795 Msa0001780:CDS
AGCAACAGCTTGTTACTGGG+AGG 0.709426 1_1:+3496493 Msa0001780:CDS
ACTTCTAACAGTATTAATCG+CGG 0.716319 1_1:+3495738 Msa0001780:CDS
CGTGGGAATGGAACCGACGG+TGG 0.718391 1_1:+3493312 Msa0001780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATATAAATGGAAA+AGG - chr1_1:3488904-3488923 None:intergenic 10.0%
!! TTATTATTATTAATCAGAAA+AGG + chr1_1:3489874-3489893 Msa0001780:five_prime_UTR 10.0%
!!! CAAAAAGTATTATTTATAAT+TGG + chr1_1:3490973-3490992 Msa0001780:five_prime_UTR 10.0%
!!! ATTTATAGATTTTTTTTTAG+AGG + chr1_1:3492461-3492480 Msa0001780:five_prime_UTR 10.0%
!!! ATTTTTTTTCTTACTAATTT+TGG + chr1_1:3493762-3493781 Msa0001780:intron 10.0%
!! AATAACTAAAATATGTTCAA+TGG + chr1_1:3488714-3488733 Msa0001780:intron 15.0%
!! AAGAAACTGAAAAAAAAAAA+AGG - chr1_1:3488805-3488824 None:intergenic 15.0%
!! ACTGACAATATTAATATAAA+TGG - chr1_1:3488910-3488929 None:intergenic 15.0%
!!! TTTTGTTTTTGTTTTTGTAA+TGG + chr1_1:3490782-3490801 Msa0001780:five_prime_UTR 15.0%
!! ATTATGAAGATTATATCTTA+TGG + chr1_1:3491048-3491067 Msa0001780:five_prime_UTR 15.0%
!! AAAATGTATAAAACTGAATT+AGG - chr1_1:3491454-3491473 None:intergenic 15.0%
!!! ATATGTTGATTACTTTAAAA+TGG + chr1_1:3491482-3491501 Msa0001780:intron 15.0%
!! ATATCAATCTAATTTCTATA+AGG - chr1_1:3492038-3492057 None:intergenic 15.0%
!! AAATTAGATTGATATAGATT+TGG + chr1_1:3492043-3492062 Msa0001780:intron 15.0%
!! AAAAATCATTACAACAATTA+AGG - chr1_1:3494019-3494038 None:intergenic 15.0%
!! TGATTAATAAATTATGACAA+AGG - chr1_1:3494194-3494213 None:intergenic 15.0%
!! ATTCAAAATAGGAAAAAATA+AGG - chr1_1:3494630-3494649 None:intergenic 15.0%
!!! TTATTTTTTCCTATTTTGAA+TGG + chr1_1:3494629-3494648 Msa0001780:intron 15.0%
!! TAATTACTTGAAATAAACAT+TGG - chr1_1:3496639-3496658 None:intergenic 15.0%
!!! GACTTTCATTTTTATTTTTA+TGG + chr1_1:3496934-3496953 Msa0001780:intron 15.0%
!!! GTTATTTTAAAGAGATCAAT+AGG - chr1_1:3488700-3488719 None:intergenic 20.0%
!! ACGTTATAAATCAAAGTAAA+AGG - chr1_1:3488767-3488786 None:intergenic 20.0%
!!! ATGAGGTTTATTTTATCAAT+AGG + chr1_1:3489334-3489353 Msa0001780:intron 20.0%
!!! TGAGGTTTATTTTATCAATA+GGG + chr1_1:3489335-3489354 Msa0001780:intron 20.0%
!! TGTGTAGTTGTTTATAAATT+GGG - chr1_1:3490125-3490144 None:intergenic 20.0%
!! ATGTGTAGTTGTTTATAAAT+TGG - chr1_1:3490126-3490145 None:intergenic 20.0%
!!! ATACATGAATGTTTCTTTTA+TGG + chr1_1:3490156-3490175 Msa0001780:five_prime_UTR 20.0%
!! TTATTGGCAGATTATTAATT+TGG - chr1_1:3490271-3490290 None:intergenic 20.0%
!!! AATTGAATTTTTTAACAGTG+TGG - chr1_1:3490388-3490407 None:intergenic 20.0%
!! AGCAAAAATAAGAACAAAAT+AGG - chr1_1:3490820-3490839 None:intergenic 20.0%
!!! ATTTTGTTCTTATTTTTGCT+TGG + chr1_1:3490820-3490839 Msa0001780:five_prime_UTR 20.0%
!! AATTTGGAAAAACAATAGAA+TGG - chr1_1:3491388-3491407 None:intergenic 20.0%
!! GGCAGATTATTATATTAATT+TGG - chr1_1:3491404-3491423 None:intergenic 20.0%
!!! TATTTTATTTCATGTGATGT+TGG + chr1_1:3490511-3490530 Msa0001780:five_prime_UTR 20.0%
!!! ATAGATTTGGAATATACAAA+AGG + chr1_1:3492056-3492075 Msa0001780:intron 20.0%
!!! TTTTTTCTTCCTTTTTTTTC+TGG + chr1_1:3492295-3492314 Msa0001780:intron 20.0%
!!! TTTTTCTTCCTTTTTTTTCT+GGG + chr1_1:3492296-3492315 Msa0001780:intron 20.0%
!!! TAAATTTTTGTAGTGCTAAA+AGG + chr1_1:3492489-3492508 Msa0001780:five_prime_UTR 20.0%
!! TTTCATTTGATTAGTGTTAA+AGG + chr1_1:3492736-3492755 Msa0001780:five_prime_UTR 20.0%
!! TTCATTTGATTAGTGTTAAA+GGG + chr1_1:3492737-3492756 Msa0001780:five_prime_UTR 20.0%
!! AAATTAATATCACCAAACAA+TGG - chr1_1:3493874-3493893 None:intergenic 20.0%
!! TACAAAACCAACAAATAAAT+CGG - chr1_1:3493958-3493977 None:intergenic 20.0%
!!! ATTTTTTACCCAGTAATTAT+TGG + chr1_1:3494033-3494052 Msa0001780:intron 20.0%
!!! ATTTTCAAGCTAACAAATTA+AGG - chr1_1:3494241-3494260 None:intergenic 20.0%
!! ACAAAAAAGTTACATCATTA+TGG - chr1_1:3494960-3494979 None:intergenic 20.0%
!! TAAAATATGGAAACTGTTAA+AGG - chr1_1:3495493-3495512 None:intergenic 20.0%
!! GAATATGGTTCAATAAAATA+TGG - chr1_1:3495506-3495525 None:intergenic 20.0%
!!! TTTTTCCTGAAAATTGTAAA+AGG - chr1_1:3495676-3495695 None:intergenic 20.0%
!! TTCAGGAAAAATATCAATTA+CGG + chr1_1:3495685-3495704 Msa0001780:intron 20.0%
!! AAAAATCATACTACATTTGA+AGG - chr1_1:3496984-3497003 None:intergenic 20.0%
!! TGAAGAAAACTTGGTTATTT+TGG - chr1_1:3488108-3488127 None:intergenic 25.0%
!! CTTACGCATATATTTTATAC+AGG - chr1_1:3488257-3488276 None:intergenic 25.0%
! TTCAAAGTGAAAACAGATTA+GGG - chr1_1:3488335-3488354 None:intergenic 25.0%
! TTTCAAAGTGAAAACAGATT+AGG - chr1_1:3488336-3488355 None:intergenic 25.0%
!!! AGTTAGTTTGATTTGATTCT+TGG + chr1_1:3488385-3488404 Msa0001780:intron 25.0%
! AACAACAAAAATGGTATTCT+CGG - chr1_1:3488468-3488487 None:intergenic 25.0%
!!! TACCATTTTTGTTGTTACAT+TGG + chr1_1:3488472-3488491 Msa0001780:intron 25.0%
! ATCCAATGTAACAACAAAAA+TGG - chr1_1:3488477-3488496 None:intergenic 25.0%
! ATAGGATATGCATAAGTTAT+TGG - chr1_1:3488682-3488701 None:intergenic 25.0%
! TTGTTGCAGAATGAAAATAT+AGG - chr1_1:3489016-3489035 None:intergenic 25.0%
! ATTTAATGCCAAAAATCCAA+GGG - chr1_1:3489274-3489293 None:intergenic 25.0%
!! CATTATTTGAGATAACATAG+TGG - chr1_1:3489317-3489336 None:intergenic 25.0%
! CTATGTTATCTCAAATAATG+AGG + chr1_1:3489317-3489336 Msa0001780:intron 25.0%
!!! GAGGTTTATTTTATCAATAG+GGG + chr1_1:3489336-3489355 Msa0001780:intron 25.0%
! TAAAAGCTTACATTACAATG+TGG - chr1_1:3489419-3489438 None:intergenic 25.0%
! TTGCATGAAACAAATACAAA+TGG + chr1_1:3489445-3489464 Msa0001780:intron 25.0%
! ATAGAAGAAGAATATACTCT+AGG - chr1_1:3489848-3489867 None:intergenic 25.0%
! AAGGTAATGATGTCAAAATT+TGG + chr1_1:3489893-3489912 Msa0001780:five_prime_UTR 25.0%
! AGGTAATGATGTCAAAATTT+GGG + chr1_1:3489894-3489913 Msa0001780:five_prime_UTR 25.0%
! ATTGCACAAATATTAACCTT+GGG - chr1_1:3490038-3490057 None:intergenic 25.0%
! TATTGCACAAATATTAACCT+TGG - chr1_1:3490039-3490058 None:intergenic 25.0%
! GTGTAGTTGTTTATAAATTG+GGG - chr1_1:3490124-3490143 None:intergenic 25.0%
! AATTTGGAAAAACAATAGAG+TGG - chr1_1:3490255-3490274 None:intergenic 25.0%
! CAGATGTATAAAACTCAATT+AGG - chr1_1:3490316-3490335 None:intergenic 25.0%
!!! TATTTTTTTCCCTTAAATGC+TGG + chr1_1:3490758-3490777 Msa0001780:five_prime_UTR 25.0%
! AAACAAAAACCAGCATTTAA+GGG - chr1_1:3490770-3490789 None:intergenic 25.0%
! AAAACAAAAACCAGCATTTA+AGG - chr1_1:3490771-3490790 None:intergenic 25.0%
!!! GTTTTGAATGCTAAATTTAG+AGG + chr1_1:3490948-3490967 Msa0001780:five_prime_UTR 25.0%
!! TTACAGTGATAATGTGTATT+TGG - chr1_1:3491229-3491248 None:intergenic 25.0%
! TATGATGAATACATACAGTT+AGG + chr1_1:3491810-3491829 Msa0001780:intron 25.0%
! ATACAAAAGAAAGGTTTGAA+GGG + chr1_1:3492327-3492346 Msa0001780:five_prime_UTR 25.0%
!! AGAAACATACCTGTTAATTT+TGG + chr1_1:3492374-3492393 Msa0001780:five_prime_UTR 25.0%
!!! GAAATTTTTGGAGACATAAA+AGG - chr1_1:3492619-3492638 None:intergenic 25.0%
!! GGGTTTTTATCATTTAAACT+TGG - chr1_1:3492893-3492912 None:intergenic 25.0%
!! ATAATGAGTTTGATAACATG+GGG - chr1_1:3492913-3492932 None:intergenic 25.0%
!! GATAATGAGTTTGATAACAT+GGG - chr1_1:3492914-3492933 None:intergenic 25.0%
!! TGATAATGAGTTTGATAACA+TGG - chr1_1:3492915-3492934 None:intergenic 25.0%
! GAGTGATTATGATTAAAGAA+AGG - chr1_1:3493059-3493078 None:intergenic 25.0%
!!! TTTTCGTTTTCGTTTGTTAA+CGG - chr1_1:3493087-3493106 None:intergenic 25.0%
! TGTTTCATACTACTAGTTAA+TGG - chr1_1:3493156-3493175 None:intergenic 25.0%
! TTTAATATCACATATGTACG+CGG + chr1_1:3493898-3493917 Msa0001780:intron 25.0%
!!! TAACCATCTGATCTTTTTTT+TGG - chr1_1:3494157-3494176 None:intergenic 25.0%
! TGATCTCCAAAATAAAAATC+AGG + chr1_1:3494853-3494872 Msa0001780:CDS 25.0%
!!! TTAGCTCCTGATTTTTATTT+TGG - chr1_1:3494862-3494881 None:intergenic 25.0%
!!! TGATGTAACTTTTTTGTACT+TGG + chr1_1:3494963-3494982 Msa0001780:intron 25.0%
! CAACAAAGGATTAAATACAA+AGG - chr1_1:3495441-3495460 None:intergenic 25.0%
! TTATTGAACCATATTCTTAC+AGG + chr1_1:3495510-3495529 Msa0001780:intron 25.0%
! TATTGAACCATATTCTTACA+GGG + chr1_1:3495511-3495530 Msa0001780:intron 25.0%
! CACAGTTAAAAGTAATAATC+TGG + chr1_1:3495593-3495612 Msa0001780:intron 25.0%
!! GTAAACCTTTTACAATTTTC+AGG + chr1_1:3495668-3495687 Msa0001780:intron 25.0%
!!! TCAATTTTGAAGAATGCTAA+AGG + chr1_1:3495906-3495925 Msa0001780:CDS 25.0%
! AGGAGTAAAATTCTTCTAAA+TGG + chr1_1:3495969-3495988 Msa0001780:CDS 25.0%
! ACAAAGAGGAAAACAATAAT+TGG + chr1_1:3496039-3496058 Msa0001780:CDS 25.0%
! TTATCCTCTATATCTACTAA+TGG - chr1_1:3496098-3496117 None:intergenic 25.0%
! AAAAAGATTACTAACCTCAA+TGG - chr1_1:3496219-3496238 None:intergenic 25.0%
!! GTAATCTTTTTAAACCTGTT+TGG + chr1_1:3496228-3496247 Msa0001780:intron 25.0%
! ACTAAGATTAAAATCCAAAC+AGG - chr1_1:3496245-3496264 None:intergenic 25.0%
! ACAATTAACTAAGATTGCAA+TGG - chr1_1:3496279-3496298 None:intergenic 25.0%
! ATCTTAGTTAATTGTTGCAA+TGG + chr1_1:3496284-3496303 Msa0001780:intron 25.0%
! ATTTGTATGATTATAGACCT+AGG + chr1_1:3496771-3496790 Msa0001780:intron 25.0%
! GAAGAATGAACTAAATATGT+AGG - chr1_1:3497013-3497032 None:intergenic 25.0%
! AATATGTTCCAAGTTTCAAA+TGG + chr1_1:3497109-3497128 Msa0001780:CDS 25.0%
! ATATGTTCCAAGTTTCAAAT+GGG + chr1_1:3497110-3497129 Msa0001780:CDS 25.0%
GTTTCAGAGAATGAAAAATG+AGG - chr1_1:3488010-3488029 None:intergenic 30.0%
AAAGGAGATGATTGGAAAAA+TGG + chr1_1:3488170-3488189 Msa0001780:five_prime_UTR 30.0%
AAGGAGATGATTGGAAAAAT+GGG + chr1_1:3488171-3488190 Msa0001780:five_prime_UTR 30.0%
TAAGTGATTTCAGTGTTCAT+GGG + chr1_1:3488553-3488572 Msa0001780:intron 30.0%
GTAACAGGGAAATAAGTATT+GGG + chr1_1:3488590-3488609 Msa0001780:intron 30.0%
TAGGTGAAAAATTGGCATTT+GGG - chr1_1:3488659-3488678 None:intergenic 30.0%
GTTATTGGTAGGTGAAAAAT+TGG - chr1_1:3488667-3488686 None:intergenic 30.0%
GATATGCATAAGTTATTGGT+AGG - chr1_1:3488678-3488697 None:intergenic 30.0%
ATTCTAATACTTGATAGACC+AGG + chr1_1:3488873-3488892 Msa0001780:five_prime_UTR 30.0%
CATTTAATGCCAAAAATCCA+AGG - chr1_1:3489275-3489294 None:intergenic 30.0%
!!! CTTGGATTTTTGGCATTAAA+TGG + chr1_1:3489273-3489292 Msa0001780:five_prime_UTR 30.0%
! TTGTAATGTAAGCTTTTAGC+AGG + chr1_1:3489421-3489440 Msa0001780:intron 30.0%
TAAGCTTATCAAAGTTCAAG+AGG + chr1_1:3489483-3489502 Msa0001780:intron 30.0%
AAGCTTATCAAAGTTCAAGA+GGG + chr1_1:3489484-3489503 Msa0001780:intron 30.0%
! TTGTTGATAAACTTTCGTTC+AGG + chr1_1:3489737-3489756 Msa0001780:intron 30.0%
TTGAAAGGAAAATCATTGTG+AGG + chr1_1:3489782-3489801 Msa0001780:five_prime_UTR 30.0%
TGAAAGGAAAATCATTGTGA+GGG + chr1_1:3489783-3489802 Msa0001780:five_prime_UTR 30.0%
! TCTATGTCTATGAGTTGAAT+TGG + chr1_1:3489978-3489997 Msa0001780:five_prime_UTR 30.0%
! CTATGAGTTGAATTGGTTTA+TGG + chr1_1:3489985-3490004 Msa0001780:five_prime_UTR 30.0%
TTGCACAAATATTAACCTTG+GGG - chr1_1:3490037-3490056 None:intergenic 30.0%
AAGCATCATAAACTGGTTAT+TGG - chr1_1:3490287-3490306 None:intergenic 30.0%
!! GAGCATCATTTTGTTTGAAT+AGG - chr1_1:3490443-3490462 None:intergenic 30.0%
! TGTGATGTTTGTTTGTTAAG+AGG + chr1_1:3490523-3490542 Msa0001780:five_prime_UTR 30.0%
! GTGATGTTTGTTTGTTAAGA+GGG + chr1_1:3490524-3490543 Msa0001780:five_prime_UTR 30.0%
! TTGTTTGTTAAGAGGGTTAT+AGG + chr1_1:3490531-3490550 Msa0001780:five_prime_UTR 30.0%
AAGTTAAAAGTGGAAATGAC+AGG - chr1_1:3490619-3490638 None:intergenic 30.0%
TATATGCTGCAAGTTAAAAG+TGG - chr1_1:3490629-3490648 None:intergenic 30.0%
CAAGTTGTACTTATCATTTC+CGG + chr1_1:3490661-3490680 Msa0001780:five_prime_UTR 30.0%
TAAGAACAAAATAGGATAGC+AGG - chr1_1:3490812-3490831 None:intergenic 30.0%
CATAAGCACTTGAGTTTATT+TGG - chr1_1:3490892-3490911 None:intergenic 30.0%
GATTGGAATTGAAAGAACTA+AGG - chr1_1:3491295-3491314 None:intergenic 30.0%
TCAATTCCAATCACTTTCAT+TGG + chr1_1:3491303-3491322 Msa0001780:intron 30.0%
ACAAATCCAATGAAAGTGAT+TGG - chr1_1:3491312-3491331 None:intergenic 30.0%
AAGCATCATAAACTGGTTAT+TGG - chr1_1:3490287-3490306 None:intergenic 30.0%
! AAACTTGAGCATCATTTTGT+TGG - chr1_1:3490449-3490468 None:intergenic 30.0%
TTAAGAGGGTTATATGCTAA+AGG + chr1_1:3491679-3491698 Msa0001780:intron 30.0%
AAGTTATCATCCACAAAAAG+TGG - chr1_1:3491768-3491787 None:intergenic 30.0%
! TTTGTGGATGATAACTTTTG+AGG + chr1_1:3491771-3491790 Msa0001780:intron 30.0%
ATGTTCTTCAGATTTGAGAA+TGG - chr1_1:3491905-3491924 None:intergenic 30.0%
CACAAACAAAATAAAACAGG+AGG - chr1_1:3491928-3491947 None:intergenic 30.0%
CCACACAAACAAAATAAAAC+AGG - chr1_1:3491931-3491950 None:intergenic 30.0%
!!! CCTGTTTTATTTTGTTTGTG+TGG + chr1_1:3491928-3491947 Msa0001780:intron 30.0%
CATACAAAAGAAAGGTTTGA+AGG + chr1_1:3492326-3492345 Msa0001780:five_prime_UTR 30.0%
!! CATACCTGTTAATTTTGGAA+TGG + chr1_1:3492379-3492398 Msa0001780:five_prime_UTR 30.0%
CATTCCATTCCAAAATTAAC+AGG - chr1_1:3492386-3492405 None:intergenic 30.0%
!!! CTGTTAATTTTGGAATGGAA+TGG + chr1_1:3492384-3492403 Msa0001780:five_prime_UTR 30.0%
TGCTAAAAGGTTGACAAAAT+GGG + chr1_1:3492502-3492521 Msa0001780:five_prime_UTR 30.0%
AGGACAACTCTTAAAAAGTA+AGG - chr1_1:3492599-3492618 None:intergenic 30.0%
ATTAGTGTTAAAGGGTAGTA+GGG + chr1_1:3492745-3492764 Msa0001780:five_prime_UTR 30.0%
GGTAAACATGTTTGTGATTT+GGG - chr1_1:3492780-3492799 None:intergenic 30.0%
TGGTAAACATGTTTGTGATT+TGG - chr1_1:3492781-3492800 None:intergenic 30.0%
TTATAACACCTCTACAAGAA+GGG + chr1_1:3492814-3492833 Msa0001780:five_prime_UTR 30.0%
TGAGTTTGTGTATGAATGAA+TGG - chr1_1:3493012-3493031 None:intergenic 30.0%
!!! CTTTTTTACAAGCCATTGTT+TGG + chr1_1:3493859-3493878 Msa0001780:intron 30.0%
ATTAAGCGCCAATAATTACT+GGG - chr1_1:3494044-3494063 None:intergenic 30.0%
TGCATTGTTTATAGATCAGA+TGG + chr1_1:3494099-3494118 Msa0001780:intron 30.0%
TTTATAGATCAGATGGTTAC+TGG + chr1_1:3494106-3494125 Msa0001780:intron 30.0%
CAGAAACTACCATTCAAAAT+AGG - chr1_1:3494641-3494660 None:intergenic 30.0%
TAGTTTCTGTGTGAAAATAC+CGG + chr1_1:3494652-3494671 Msa0001780:intron 30.0%
CATAAAAGATTGCAAATACC+TGG - chr1_1:3494904-3494923 None:intergenic 30.0%
!!! CAAAATTTTGTTTTCCTCCT+GGG - chr1_1:3495005-3495024 None:intergenic 30.0%
! TCTAGTTAAGAGTTTTTGCA+TGG + chr1_1:3495227-3495246 Msa0001780:intron 30.0%
! CTAGTTAAGAGTTTTTGCAT+GGG + chr1_1:3495228-3495247 Msa0001780:intron 30.0%
AAGAAAGAAAAACTCTCGAT+CGG + chr1_1:3495268-3495287 Msa0001780:CDS 30.0%
ACTTAAAGACAAAGCAACAA+AGG - chr1_1:3495455-3495474 None:intergenic 30.0%
AAAAGGTTTACCTTGAGTAA+TGG - chr1_1:3495659-3495678 None:intergenic 30.0%
ACTTCTAACAGTATTAATCG+CGG + chr1_1:3495738-3495757 Msa0001780:CDS 30.0%
GAACATCATCCTTTCAAATA+AGG + chr1_1:3495865-3495884 Msa0001780:CDS 30.0%
TGAAAGAACTAAAGACAAAG+AGG + chr1_1:3496025-3496044 Msa0001780:CDS 30.0%
GAGGAAAACAATAATTGGAA+AGG + chr1_1:3496044-3496063 Msa0001780:CDS 30.0%
CAATAATTGGAAAGGAAGTT+TGG + chr1_1:3496052-3496071 Msa0001780:CDS 30.0%
! GGTACTTCTTTTTCTCTTTT+TGG + chr1_1:3496514-3496533 Msa0001780:intron 30.0%
!!! CTTGCTTTTTTTCTGAAACT+AGG + chr1_1:3496575-3496594 Msa0001780:intron 30.0%
! TCTATATGTGTTTCTGTACA+AGG + chr1_1:3496660-3496679 Msa0001780:intron 30.0%
CTCATACAAATGTTAAACCT+AGG - chr1_1:3496791-3496810 None:intergenic 30.0%
TCTATTTATGCAGCTTAACT+TGG + chr1_1:3496850-3496869 Msa0001780:intron 30.0%
GGAAAATATTGTCATTGAAG+AGG - chr1_1:3496963-3496982 None:intergenic 30.0%
AAACTTGGAACATATTCAAC+AGG - chr1_1:3497105-3497124 None:intergenic 30.0%
TCAGAGAATGAAAAATGAGG+TGG - chr1_1:3488007-3488026 None:intergenic 35.0%
!!! TTGGTTATTTTGGCTGAAAC+AGG - chr1_1:3488098-3488117 None:intergenic 35.0%
TTGAGGTGATGAAGAAAACT+TGG - chr1_1:3488117-3488136 None:intergenic 35.0%
TAGAAAGATGGATCATGTTG+AGG - chr1_1:3488134-3488153 None:intergenic 35.0%
CTTCTGTTTGGATAGAAAGA+TGG - chr1_1:3488146-3488165 None:intergenic 35.0%
TGCATGTTCAAGATAGGAAT+GGG - chr1_1:3488438-3488457 None:intergenic 35.0%
ATGCATGTTCAAGATAGGAA+TGG - chr1_1:3488439-3488458 None:intergenic 35.0%
AGGAAATGCATGTTCAAGAT+AGG - chr1_1:3488444-3488463 None:intergenic 35.0%
ACAAAAATGGTATTCTCGGA+AGG - chr1_1:3488464-3488483 None:intergenic 35.0%
CTAAGTGATTTCAGTGTTCA+TGG + chr1_1:3488552-3488571 Msa0001780:intron 35.0%
AAGTGATTTCAGTGTTCATG+GGG + chr1_1:3488554-3488573 Msa0001780:intron 35.0%
! GAAAGGTGAATTTGGTAACA+GGG + chr1_1:3488576-3488595 Msa0001780:intron 35.0%
GGTAACAGGGAAATAAGTAT+TGG + chr1_1:3488589-3488608 Msa0001780:intron 35.0%
GTAGGTGAAAAATTGGCATT+TGG - chr1_1:3488660-3488679 None:intergenic 35.0%
TTCAATGTTGATGTCACTGT+TGG + chr1_1:3488834-3488853 Msa0001780:five_prime_UTR 35.0%
TAAATGGAAAAGGACTTTCC+TGG - chr1_1:3488894-3488913 None:intergenic 35.0%
TCTGCAACAAAGAAATCAGT+AGG + chr1_1:3489026-3489045 Msa0001780:five_prime_UTR 35.0%
GACATACCAGAACAAACTAT+GGG - chr1_1:3489086-3489105 None:intergenic 35.0%
AGACATACCAGAACAAACTA+TGG - chr1_1:3489087-3489106 None:intergenic 35.0%
CAGAGAATAGCTAAAGCTTA+GGG - chr1_1:3489121-3489140 None:intergenic 35.0%
TCAGAGAATAGCTAAAGCTT+AGG - chr1_1:3489122-3489141 None:intergenic 35.0%
! TCCGTCACATTAGATTTTCT+GGG - chr1_1:3489234-3489253 None:intergenic 35.0%
ATCAATAGGGGATTTAGTCT+AGG + chr1_1:3489348-3489367 Msa0001780:intron 35.0%
TCAATAGGGGATTTAGTCTA+GGG + chr1_1:3489349-3489368 Msa0001780:intron 35.0%
GCTTACATTACAATGTGGAT+GGG - chr1_1:3489414-3489433 None:intergenic 35.0%
AGCTTACATTACAATGTGGA+TGG - chr1_1:3489415-3489434 None:intergenic 35.0%
GATATGTGCACAGTGATTAA+CGG - chr1_1:3489565-3489584 None:intergenic 35.0%
GAATTCATCGCAAGACAATT+TGG - chr1_1:3489696-3489715 None:intergenic 35.0%
!! CCTTTCAACAAGCTTTGAAA+AGG - chr1_1:3489770-3489789 None:intergenic 35.0%
!!! CCTTTTCAAAGCTTGTTGAA+AGG + chr1_1:3489767-3489786 Msa0001780:five_prime_UTR 35.0%
TATAAATCACTAATCCCCCA+AGG + chr1_1:3490019-3490038 Msa0001780:five_prime_UTR 35.0%
TGCACAAATATTAACCTTGG+GGG - chr1_1:3490036-3490055 None:intergenic 35.0%
! CTTTTATGGCATTCAGATGT+TGG + chr1_1:3490170-3490189 Msa0001780:five_prime_UTR 35.0%
TTAAGAGGGTTATAGGCTAA+AGG + chr1_1:3490538-3490557 Msa0001780:five_prime_UTR 35.0%
CTTAATCTACACAAATCTGC+AGG + chr1_1:3491084-3491103 Msa0001780:five_prime_UTR 35.0%
! GAGCATCATTTTGTTGGAAT+AGG - chr1_1:3491581-3491600 None:intergenic 35.0%
CATTGAGAAACTGTGAATGA+AGG + chr1_1:3491976-3491995 Msa0001780:intron 35.0%
!! GAGTTTTGTGAATGCAAAGT+TGG - chr1_1:3492007-3492026 None:intergenic 35.0%
ACTTTGCATTCACAAAACTC+AGG + chr1_1:3492007-3492026 Msa0001780:intron 35.0%
GCAGATTGCATACAAAAGAA+AGG + chr1_1:3492318-3492337 Msa0001780:intron 35.0%
GTGCTAAAAGGTTGACAAAA+TGG + chr1_1:3492501-3492520 Msa0001780:five_prime_UTR 35.0%
! AACCACTTTCCAGATTTTGT+GGG - chr1_1:3492535-3492554 None:intergenic 35.0%
! AAACCACTTTCCAGATTTTG+TGG - chr1_1:3492536-3492555 None:intergenic 35.0%
GATTAGTGTTAAAGGGTAGT+AGG + chr1_1:3492744-3492763 Msa0001780:five_prime_UTR 35.0%
TTAGTGTTAAAGGGTAGTAG+GGG + chr1_1:3492746-3492765 Msa0001780:five_prime_UTR 35.0%
!! AGGTGTTATAAGAAGGTACT+TGG - chr1_1:3492805-3492824 None:intergenic 35.0%
!! CTTGTAGAGGTGTTATAAGA+AGG - chr1_1:3492812-3492831 None:intergenic 35.0%
CTTATAACACCTCTACAAGA+AGG + chr1_1:3492813-3492832 Msa0001780:five_prime_UTR 35.0%
CTTTGTGTATTCGTAGCATT+TGG + chr1_1:3493225-3493244 Msa0001780:five_prime_UTR 35.0%
GTTCTATGTGTTTGCAGATA+AGG + chr1_1:3493575-3493594 Msa0001780:intron 35.0%
TAGAGAAAAAGCTGTTGAAG+AGG + chr1_1:3493656-3493675 Msa0001780:CDS 35.0%
CCAAAATTATCATGCCGTTA+CGG + chr1_1:3493726-3493745 Msa0001780:intron 35.0%
ATGTACGCGGTAATTATGTT+TGG + chr1_1:3493911-3493930 Msa0001780:intron 35.0%
TGTACGCGGTAATTATGTTT+GGG + chr1_1:3493912-3493931 Msa0001780:intron 35.0%
TTATGTTTGGGCTGAATTAC+AGG + chr1_1:3493924-3493943 Msa0001780:intron 35.0%
TATGTTTGGGCTGAATTACA+GGG + chr1_1:3493925-3493944 Msa0001780:intron 35.0%
GATTAAGCGCCAATAATTAC+TGG - chr1_1:3494045-3494064 None:intergenic 35.0%
!!! TCTGATCTTTTTTTTGGTGG+TGG - chr1_1:3494151-3494170 None:intergenic 35.0%
!!! CCATCTGATCTTTTTTTTGG+TGG - chr1_1:3494154-3494173 None:intergenic 35.0%
CCACCAAAAAAAAGATCAGA+TGG + chr1_1:3494151-3494170 Msa0001780:intron 35.0%
! CTAGAAAGCAAAGTATTTCC+TGG + chr1_1:3494345-3494364 Msa0001780:intron 35.0%
TGCACATTAACGTTTGATAG+AGG - chr1_1:3494373-3494392 None:intergenic 35.0%
GTAAACACATCACAACATGA+AGG - chr1_1:3494406-3494425 None:intergenic 35.0%
!! TGATGAAAAGAAAGCATCGA+TGG + chr1_1:3494469-3494488 Msa0001780:CDS 35.0%
! TGTGTGAAAATACCGGTTAA+AGG + chr1_1:3494659-3494678 Msa0001780:intron 35.0%
! GTGTGAAAATACCGGTTAAA+GGG + chr1_1:3494660-3494679 Msa0001780:intron 35.0%
TCAAGATGATAACAGAGCTT+TGG + chr1_1:3494745-3494764 Msa0001780:CDS 35.0%
CTTCCTTAGATTTCGTAAGA+CGG - chr1_1:3494772-3494791 None:intergenic 35.0%
!!! CCAAAATTTTGTTTTCCTCC+TGG - chr1_1:3495006-3495025 None:intergenic 35.0%
! CCAGGAGGAAAACAAAATTT+TGG + chr1_1:3495003-3495022 Msa0001780:intron 35.0%
AAAATCAAGAGTGAAGCAAC+TGG - chr1_1:3495197-3495216 None:intergenic 35.0%
AGAAAGAAAAACTCTCGATC+GGG + chr1_1:3495269-3495288 Msa0001780:CDS 35.0%
AAGTGATGCCTGTAAAACAA+TGG + chr1_1:3495367-3495386 Msa0001780:CDS 35.0%
!! TCTTCAAGCCATTGTTTTAC+AGG - chr1_1:3495378-3495397 None:intergenic 35.0%
CAACCTGCATGTATTAACTT+AGG + chr1_1:3495621-3495640 Msa0001780:intron 35.0%
TCTCCTAAGTTAATACATGC+AGG - chr1_1:3495627-3495646 None:intergenic 35.0%
ATAAGTTCTGCCATTACTCA+AGG + chr1_1:3495646-3495665 Msa0001780:intron 35.0%
AGGGAAAATGTGTTAGCAAT+GGG + chr1_1:3495769-3495788 Msa0001780:CDS 35.0%
ATATCCAAACCCAACTCTAA+TGG + chr1_1:3495828-3495847 Msa0001780:CDS 35.0%
TATCCAAACCCAACTCTAAT+GGG + chr1_1:3495829-3495848 Msa0001780:CDS 35.0%
ATTCTTCAAAATTGAGCTGG+AGG - chr1_1:3495901-3495920 None:intergenic 35.0%
AGCATTCTTCAAAATTGAGC+TGG - chr1_1:3495904-3495923 None:intergenic 35.0%
!! CTTTAGTTCTTTCAGAAGAC+TGG - chr1_1:3496019-3496038 None:intergenic 35.0%
TCTACTAATGGCAAGTCATT+TGG - chr1_1:3496086-3496105 None:intergenic 35.0%
CTTGCCATTAGTAGATATAG+AGG + chr1_1:3496091-3496110 Msa0001780:CDS 35.0%
GATATAGAGGATAATGTTCC+AGG + chr1_1:3496104-3496123 Msa0001780:CDS 35.0%
AGCAAATCATACAAAACTCC+TGG - chr1_1:3496125-3496144 None:intergenic 35.0%
! TGGCATCGTCTTTATCTTTT+AGG - chr1_1:3496199-3496218 None:intergenic 35.0%
AACTGCTGCAAACTAAATTC+AGG - chr1_1:3496705-3496724 None:intergenic 35.0%
! CGCAAACTAGATTTAGTTCA+AGG + chr1_1:3497057-3497076 Msa0001780:CDS 35.0%
! TAGAACACCCATTTGAAACT+TGG - chr1_1:3497120-3497139 None:intergenic 35.0%
! GAGAGGACGCAATTTGATTT+GGG - chr1_1:3487985-3488004 None:intergenic 40.0%
GAATGAAAAATGAGGTGGAG+AGG - chr1_1:3488002-3488021 None:intergenic 40.0%
! TATCCAAACAGAAGCACGAA+AGG + chr1_1:3488152-3488171 Msa0001780:five_prime_UTR 40.0%
TGCTAGGAAACTTCGTTCAA+AGG - chr1_1:3488202-3488221 None:intergenic 40.0%
ATGTTCAAGATAGGAATGGG+GGG - chr1_1:3488435-3488454 None:intergenic 40.0%
CATGTTCAAGATAGGAATGG+GGG - chr1_1:3488436-3488455 None:intergenic 40.0%
GCATGTTCAAGATAGGAATG+GGG - chr1_1:3488437-3488456 None:intergenic 40.0%
ATTTCAGTGTTCATGGGGAA+AGG + chr1_1:3488559-3488578 Msa0001780:intron 40.0%
TTCATGGGGAAAGGTGAATT+TGG + chr1_1:3488568-3488587 Msa0001780:intron 40.0%
! GGAAAGGTGAATTTGGTAAC+AGG + chr1_1:3488575-3488594 Msa0001780:intron 40.0%
TTGGCATTTGGGCTATCTTT+GGG - chr1_1:3488648-3488667 None:intergenic 40.0%
ATTGGCATTTGGGCTATCTT+TGG - chr1_1:3488649-3488668 None:intergenic 40.0%
!! CGAGTAGAGTATTGTGAAAC+TGG + chr1_1:3488936-3488955 Msa0001780:five_prime_UTR 40.0%
TAGGTTACTCTTTCAGCACA+TGG - chr1_1:3488997-3489016 None:intergenic 40.0%
GCCCAGAAAATCTAATGTGA+CGG + chr1_1:3489230-3489249 Msa0001780:intron 40.0%
! CTCCGTCACATTAGATTTTC+TGG - chr1_1:3489235-3489254 None:intergenic 40.0%
ATGCCAAAAATCCAAGGGAT+CGG - chr1_1:3489269-3489288 None:intergenic 40.0%
TTTGTGTGTGCAAACGTAGT+TGG + chr1_1:3489601-3489620 Msa0001780:intron 40.0%
GTGCAAACGTAGTTGGTTAT+TGG + chr1_1:3489608-3489627 Msa0001780:intron 40.0%
!! GTCAAAATTTGGGTTGCTAC+TGG + chr1_1:3489904-3489923 Msa0001780:five_prime_UTR 40.0%
ATCTTCGCATTTGTCATCGT+CGG - chr1_1:3490065-3490084 None:intergenic 40.0%
! AGATTATATCAAGAGCGCGA+TGG + chr1_1:3490081-3490100 Msa0001780:five_prime_UTR 40.0%
GAGCTACAAGCATCATAAAC+TGG - chr1_1:3490294-3490313 None:intergenic 40.0%
TGCACATGCAGAATATAGTG+AGG - chr1_1:3490575-3490594 None:intergenic 40.0%
CACAACTTAGATCATGTCTC+CGG - chr1_1:3490683-3490702 None:intergenic 40.0%
TACTCCCTATACCAGTCATA+CGG + chr1_1:3490714-3490733 Msa0001780:five_prime_UTR 40.0%
AGAACCGTATGACTGGTATA+GGG - chr1_1:3490721-3490740 None:intergenic 40.0%
AAGAACCGTATGACTGGTAT+AGG - chr1_1:3490722-3490741 None:intergenic 40.0%
CAAAGAAAGAACCGTATGAC+TGG - chr1_1:3490728-3490747 None:intergenic 40.0%
CATACGGTTCTTTCTTTGAG+AGG + chr1_1:3490730-3490749 Msa0001780:five_prime_UTR 40.0%
!!! TTTTGCTTGGCTTGTGCTTT+AGG + chr1_1:3490833-3490852 Msa0001780:five_prime_UTR 40.0%
GCTCTCTATTTCAAGAGCTT+GGG - chr1_1:3491001-3491020 None:intergenic 40.0%
TGCTCTCTATTTCAAGAGCT+TGG - chr1_1:3491002-3491021 None:intergenic 40.0%
!! CAAACACTTTGAGATACCGT+GGG + chr1_1:3491145-3491164 Msa0001780:five_prime_UTR 40.0%
GAGCTACAAGCATCATAAAC+TGG - chr1_1:3490294-3490313 None:intergenic 40.0%
TGTGATGTTGGTGTGTTAAG+AGG + chr1_1:3491664-3491683 Msa0001780:intron 40.0%
GTGATGTTGGTGTGTTAAGA+GGG + chr1_1:3491665-3491684 Msa0001780:intron 40.0%
CCACAAAAAGTGGAAATGAC+AGG - chr1_1:3491758-3491777 None:intergenic 40.0%
!!! CCTGTCATTTCCACTTTTTG+TGG + chr1_1:3491755-3491774 Msa0001780:intron 40.0%
! TTGTGTGGTTCAACCTTTTC+TGG + chr1_1:3491943-3491962 Msa0001780:intron 40.0%
! TGTGTGGTTCAACCTTTTCT+GGG + chr1_1:3491944-3491963 Msa0001780:intron 40.0%
!!! TTCAACCTTTTCTGGGATTC+TGG + chr1_1:3491951-3491970 Msa0001780:intron 40.0%
ATGTACCAGAATCCCAGAAA+AGG - chr1_1:3491959-3491978 None:intergenic 40.0%
AGCATAAGTGACAATCGTCA+TGG - chr1_1:3492091-3492110 None:intergenic 40.0%
GCAATCTGCCCAGAAAAAAA+AGG - chr1_1:3492307-3492326 None:intergenic 40.0%
CAAAAGAAAGGTTTGAAGGG+AGG + chr1_1:3492330-3492349 Msa0001780:five_prime_UTR 40.0%
! AATACTAGAAGCTTTGTCGC+AGG - chr1_1:3492444-3492463 None:intergenic 40.0%
GGATAAGATCCCACAAAATC+TGG + chr1_1:3492523-3492542 Msa0001780:five_prime_UTR 40.0%
ATCCCACAAAATCTGGAAAG+TGG + chr1_1:3492530-3492549 Msa0001780:five_prime_UTR 40.0%
GGAAAGTGGTTTACTTTGTG+AGG + chr1_1:3492544-3492563 Msa0001780:five_prime_UTR 40.0%
AAGTAAGGACACTTTACAGC+TGG - chr1_1:3492584-3492603 None:intergenic 40.0%
! CTTGCTGGGGAAGAAATTTT+TGG - chr1_1:3492631-3492650 None:intergenic 40.0%
TGTAGATCAACATTTCCGGT+GGG - chr1_1:3492660-3492679 None:intergenic 40.0%
! ACATGTTTGTGATTTGGGAG+AGG - chr1_1:3492775-3492794 None:intergenic 40.0%
!! GTTATAAGAAGGTACTTGGC+TGG - chr1_1:3492801-3492820 None:intergenic 40.0%
! CTTTCTCTGTCACACAGTTT+TGG + chr1_1:3492966-3492985 Msa0001780:five_prime_UTR 40.0%
TTTCCGGATCGTTTAAGGAA+GGG + chr1_1:3493356-3493375 Msa0001780:CDS 40.0%
TTTCCCTTCCTTAAACGATC+CGG - chr1_1:3493362-3493381 None:intergenic 40.0%
! GAGTTCATGAACTTGCTTCA+TGG + chr1_1:3493433-3493452 Msa0001780:CDS 40.0%
! CATGAACTTGCTTCATGGTT+CGG + chr1_1:3493438-3493457 Msa0001780:CDS 40.0%
CGACTTGAGAATGATGTTAG+AGG + chr1_1:3493484-3493503 Msa0001780:CDS 40.0%
! CCGTAACGGCATGATAATTT+TGG - chr1_1:3493729-3493748 None:intergenic 40.0%
ATTATCATGCCGTTACGGTT+AGG + chr1_1:3493731-3493750 Msa0001780:intron 40.0%
TCGCAAAATCCTAACCGTAA+CGG - chr1_1:3493743-3493762 None:intergenic 40.0%
!!! ATCTTTTTTTTGGTGGTGGC+CGG - chr1_1:3494147-3494166 None:intergenic 40.0%
GCTTACTGAAGAATTGTCGA+AGG + chr1_1:3494290-3494309 Msa0001780:intron 40.0%
GAAGAATTGTCGAAGGTAGA+TGG + chr1_1:3494297-3494316 Msa0001780:CDS 40.0%
GCAATCTGCAAGAAACAAGT+CGG - chr1_1:3494719-3494738 None:intergenic 40.0%
!! ATTTTGGAGATCATCCACCA+TGG - chr1_1:3494846-3494865 None:intergenic 40.0%
GAAACAGATTGAGATTTGCC+AGG + chr1_1:3494883-3494902 Msa0001780:CDS 40.0%
!! CATGGGCTGTTTGACATTTT+AGG + chr1_1:3495245-3495264 Msa0001780:intron 40.0%
!! TACTCTGTTTGCTGTTACCT+TGG - chr1_1:3495307-3495326 None:intergenic 40.0%
AAACAGAGTAGCTGTAGTAG+TGG + chr1_1:3495317-3495336 Msa0001780:CDS 40.0%
CTGTAGTAGTGGCTAATGAA+TGG + chr1_1:3495328-3495347 Msa0001780:CDS 40.0%
CATCTCTCCCTGTAAGAATA+TGG - chr1_1:3495521-3495540 None:intergenic 40.0%
GAGGGAAAATGTGTTAGCAA+TGG + chr1_1:3495768-3495787 Msa0001780:CDS 40.0%
AAACCCATTAGAGTTGGGTT+TGG - chr1_1:3495835-3495854 None:intergenic 40.0%
GTCAGAAACCCATTAGAGTT+GGG - chr1_1:3495840-3495859 None:intergenic 40.0%
AGTCAGAAACCCATTAGAGT+TGG - chr1_1:3495841-3495860 None:intergenic 40.0%
! CACAGAGGACCTTATTTGAA+AGG - chr1_1:3495877-3495896 None:intergenic 40.0%
! GCATCTAAGTCTTTTGATGG+TGG + chr1_1:3495930-3495949 Msa0001780:CDS 40.0%
!! GTATGATTTGCTGCAGAAAG+AGG + chr1_1:3496133-3496152 Msa0001780:CDS 40.0%
AGATAAAGACGATGCCATTG+AGG + chr1_1:3496202-3496221 Msa0001780:CDS 40.0%
!!! CCACTTTTTTTGCTAGCATC+TGG - chr1_1:3496320-3496339 None:intergenic 40.0%
CCAGATGCTAGCAAAAAAAG+TGG + chr1_1:3496317-3496336 Msa0001780:intron 40.0%
GGATACATTGACCAAAGCTA+TGG + chr1_1:3496338-3496357 Msa0001780:CDS 40.0%
GGAGAGGACGCAATTTGATT+TGG - chr1_1:3487986-3488005 None:intergenic 45.0%
TCTCCTTTCGTGCTTCTGTT+TGG - chr1_1:3488158-3488177 None:intergenic 45.0%
GAAGCACGAAAGGAGATGAT+TGG + chr1_1:3488162-3488181 Msa0001780:five_prime_UTR 45.0%
ACGAAGTTTCCTAGCAACTC+CGG + chr1_1:3488206-3488225 Msa0001780:five_prime_UTR 45.0%
AGAGATTGTTGAAACGAGCC+CGG - chr1_1:3488228-3488247 None:intergenic 45.0%
AGTAGGATATGCCATTGCAC+TGG + chr1_1:3489043-3489062 Msa0001780:five_prime_UTR 45.0%
GTAGGATATGCCATTGCACT+GGG + chr1_1:3489044-3489063 Msa0001780:five_prime_UTR 45.0%
!! GGTTCACCCATAGTTTGTTC+TGG + chr1_1:3489077-3489096 Msa0001780:five_prime_UTR 45.0%
TGCCAAAAATCCAAGGGATC+GGG - chr1_1:3489268-3489287 None:intergenic 45.0%
!! CAATGTGGATGGGTTGAGTT+TGG - chr1_1:3489404-3489423 None:intergenic 45.0%
CAATGCCTTCGTAGTCATGT+AGG - chr1_1:3489933-3489952 None:intergenic 45.0%
TTCCTGTTGTCATGCTTGCT+TGG + chr1_1:3491115-3491134 Msa0001780:five_prime_UTR 45.0%
! CCACGGTATCTCAAAGTGTT+TGG - chr1_1:3491147-3491166 None:intergenic 45.0%
!! CCAAACACTTTGAGATACCG+TGG + chr1_1:3491144-3491163 Msa0001780:five_prime_UTR 45.0%
! TTTGAGATACCGTGGGATGA+AGG + chr1_1:3491152-3491171 Msa0001780:five_prime_UTR 45.0%
! AGCTGTCAAAGTGTCTGATG+AGG + chr1_1:3491175-3491194 Msa0001780:five_prime_UTR 45.0%
! ACGATTGTCACTTATGCTGC+AGG + chr1_1:3492093-3492112 Msa0001780:intron 45.0%
GAAAGGTTTGAAGGGAGGAA+AGG + chr1_1:3492335-3492354 Msa0001780:five_prime_UTR 45.0%
! TTGGTGTTTCAGCTGCATTG+TGG - chr1_1:3492419-3492438 None:intergenic 45.0%
CTGTAGATCAACATTTCCGG+TGG - chr1_1:3492661-3492680 None:intergenic 45.0%
CATTTGGATGTTCGTCTGAG+TGG + chr1_1:3493241-3493260 Msa0001780:five_prime_UTR 45.0%
! TCGTCTGAGTGGTTTCGTTT+TGG + chr1_1:3493252-3493271 Msa0001780:five_prime_UTR 45.0%
!! CGTTTTGGCATCAGTGAGAT+CGG + chr1_1:3493267-3493286 Msa0001780:five_prime_UTR 45.0%
GTTTCCGGATCGTTTAAGGA+AGG + chr1_1:3493355-3493374 Msa0001780:CDS 45.0%
GCATTCGATGAGACCTAGTT+TGG + chr1_1:3493402-3493421 Msa0001780:CDS 45.0%
GATGAGACCTAGTTTGGATG+CGG + chr1_1:3493408-3493427 Msa0001780:CDS 45.0%
AACTCATCCGCATCCAAACT+AGG - chr1_1:3493418-3493437 None:intergenic 45.0%
CGATTAAGCTCCAGTTTCAC+TGG - chr1_1:3493466-3493485 None:intergenic 45.0%
! CCAACAAATAAATCGGCTCC+CGG - chr1_1:3493951-3493970 None:intergenic 45.0%
AGATCAGATGGTTACTGGTC+CGG + chr1_1:3494111-3494130 Msa0001780:intron 45.0%
!!! TCTTTTTTTTGGTGGTGGCC+GGG - chr1_1:3494146-3494165 None:intergenic 45.0%
TAACGTTTGATAGAGGCTCC+AGG - chr1_1:3494366-3494385 None:intergenic 45.0%
AGCTGAAGCTACTCTTCGAA+GGG + chr1_1:3494505-3494524 Msa0001780:CDS 45.0%
GCTAGAATGGCTTCTATAGG+AGG - chr1_1:3494560-3494579 None:intergenic 45.0%
GGAGCTAGAATGGCTTCTAT+AGG - chr1_1:3494563-3494582 None:intergenic 45.0%
!! AGCCATTCTAGCTCCTTTAG+AGG + chr1_1:3494568-3494587 Msa0001780:CDS 45.0%
! AGCCTCTAAAGGAGCTAGAA+TGG - chr1_1:3494573-3494592 None:intergenic 45.0%
AGCTTGAGTTCAGCCTCTAA+AGG - chr1_1:3494584-3494603 None:intergenic 45.0%
GGACCGTCTTACGAAATCTA+AGG + chr1_1:3494766-3494785 Msa0001780:CDS 45.0%
CAGCACTTCTTGAAGCTGAA+AGG + chr1_1:3494792-3494811 Msa0001780:CDS 45.0%
TGAAGCTGAAAGGACTGTTC+AGG + chr1_1:3494802-3494821 Msa0001780:CDS 45.0%
!!! TTTTGTTTTCCTCCTGGGAG+AGG - chr1_1:3495000-3495019 None:intergenic 45.0%
GGACAGAATGCATAGACTGA+AGG + chr1_1:3495024-3495043 Msa0001780:CDS 45.0%
CAGAATGCATAGACTGAAGG+TGG + chr1_1:3495027-3495046 Msa0001780:CDS 45.0%
AAAAGCTCACCCAAACTGTC+AGG + chr1_1:3495059-3495078 Msa0001780:CDS 45.0%
AAAGCTCACCCAAACTGTCA+GGG + chr1_1:3495060-3495079 Msa0001780:CDS 45.0%
! CTCTAGTTCCCTGACAGTTT+GGG - chr1_1:3495071-3495090 None:intergenic 45.0%
CAAGAGTGAAGCAACTGGAA+AGG - chr1_1:3495192-3495211 None:intergenic 45.0%
AAAAACTCTCGATCGGGAGT+TGG + chr1_1:3495275-3495294 Msa0001780:CDS 45.0%
TATTAATCGCGGCACTTCAG+AGG + chr1_1:3495749-3495768 Msa0001780:CDS 45.0%
ATTAATCGCGGCACTTCAGA+GGG + chr1_1:3495750-3495769 Msa0001780:CDS 45.0%
TATGCTATCTGTTCCACCCA+GGG - chr1_1:3495811-3495830 None:intergenic 45.0%
ATATGCTATCTGTTCCACCC+AGG - chr1_1:3495812-3495831 None:intergenic 45.0%
! GGCGCATCTAAGTCTTTTGA+TGG + chr1_1:3495927-3495946 Msa0001780:CDS 45.0%
!!! AGTCTTTTGATGGTGGCTCT+AGG + chr1_1:3495937-3495956 Msa0001780:CDS 45.0%
TGGTTAAACGACGAACTTGG+TGG - chr1_1:3495999-3496018 None:intergenic 45.0%
! GACTGGTTAAACGACGAACT+TGG - chr1_1:3496002-3496021 None:intergenic 45.0%
AGAAAGAGGTCCTAGTGTTG+AGG + chr1_1:3496147-3496166 Msa0001780:CDS 45.0%
GACCAAAGCTATGGAAGTTG+AGG + chr1_1:3496347-3496366 Msa0001780:CDS 45.0%
TGCCTCAACTTCCATAGCTT+TGG - chr1_1:3496352-3496371 None:intergenic 45.0%
TTGAGGCAAAGAAGATGCGA+AGG + chr1_1:3496364-3496383 Msa0001780:CDS 45.0%
TGAGGCAAAGAAGATGCGAA+GGG + chr1_1:3496365-3496384 Msa0001780:CDS 45.0%
CTTCACATTGCTGAAACGCT+TGG - chr1_1:3496454-3496473 None:intergenic 45.0%
! GTTGCTGAGCACTGTTCATA+GGG - chr1_1:3496479-3496498 None:intergenic 45.0%
! TGTTGCTGAGCACTGTTCAT+AGG - chr1_1:3496480-3496499 None:intergenic 45.0%
!! CTCAGCAACAGCTTGTTACT+GGG + chr1_1:3496490-3496509 Msa0001780:CDS 45.0%
!! AAATAATAATAATAAATACA+AGG - chr1_1:3490924-3490943 None:intergenic 5.0%
!! AGAAAATAAATAAAAAATTA+AGG - chr1_1:3493988-3494007 None:intergenic 5.0%
AGCTGTGGGAAGAGAAGCTA+CGG - chr1_1:3488032-3488051 None:intergenic 50.0%
TTGGCTGAAACAGGCCATCT+CGG - chr1_1:3488089-3488108 None:intergenic 50.0%
CGAAGTTTCCTAGCAACTCC+GGG + chr1_1:3488207-3488226 Msa0001780:five_prime_UTR 50.0%
ATTGCACTGGGACTGCTACA+CGG + chr1_1:3489056-3489075 Msa0001780:five_prime_UTR 50.0%
AACCAAATTGCCCGATCCCT+TGG + chr1_1:3489255-3489274 Msa0001780:five_prime_UTR 50.0%
ATCCAAGGGATCGGGCAATT+TGG - chr1_1:3489260-3489279 None:intergenic 50.0%
! TGCCCGATCCCTTGGATTTT+TGG + chr1_1:3489263-3489282 Msa0001780:five_prime_UTR 50.0%
GGCTTCCTACATGACTACGA+AGG + chr1_1:3489925-3489944 Msa0001780:five_prime_UTR 50.0%
AGCCAAGCAAGCATGACAAC+AGG - chr1_1:3491120-3491139 None:intergenic 50.0%
TTGACAGCTCCTTCATCCCA+CGG - chr1_1:3491164-3491183 None:intergenic 50.0%
GCTGCACATGCAGAATAGTG+AGG - chr1_1:3491716-3491735 None:intergenic 50.0%
! AGAAGCTTTGTCGCAGGCAT+TGG - chr1_1:3492438-3492457 None:intergenic 50.0%
!! CGGTGGGTTATTACTTGCTG+GGG - chr1_1:3492644-3492663 None:intergenic 50.0%
!! CCGGTGGGTTATTACTTGCT+GGG - chr1_1:3492645-3492664 None:intergenic 50.0%
CCCAGCAAGTAATAACCCAC+CGG + chr1_1:3492642-3492661 Msa0001780:five_prime_UTR 50.0%
!! TCCGGTGGGTTATTACTTGC+TGG - chr1_1:3492646-3492665 None:intergenic 50.0%
AAATGGGGCCCTTCTTGTAG+AGG - chr1_1:3492825-3492844 None:intergenic 50.0%
TCGGCGTAGGATAGCAAATG+GGG - chr1_1:3492840-3492859 None:intergenic 50.0%
GTCGGCGTAGGATAGCAAAT+GGG - chr1_1:3492841-3492860 None:intergenic 50.0%
GCACTCCATGCAATGTTCGT+CGG - chr1_1:3492859-3492878 None:intergenic 50.0%
! TCGGCGATGGCTGAATTTTC+CGG + chr1_1:3493286-3493305 Msa0001780:exon 50.0%
! GCTGAATTTTCCGGTGACGT+GGG + chr1_1:3493295-3493314 Msa0001780:CDS 50.0%
! ATTTTCCGGTGACGTGGGAA+TGG + chr1_1:3493300-3493319 Msa0001780:CDS 50.0%
AACGATCCGGAAACCGTCAA+CGG - chr1_1:3493349-3493368 None:intergenic 50.0%
GACGGTTTCCGGATCGTTTA+AGG + chr1_1:3493351-3493370 Msa0001780:CDS 50.0%
! TGGTTCGGATCCAGTGAAAC+TGG + chr1_1:3493453-3493472 Msa0001780:CDS 50.0%
TTTGGGCTGAATTACAGGGC+CGG + chr1_1:3493929-3493948 Msa0001780:intron 50.0%
! CCGGGAGCCGATTTATTTGT+TGG + chr1_1:3493948-3493967 Msa0001780:intron 50.0%
GATCAGATGGTTACTGGTCC+GGG + chr1_1:3494112-3494131 Msa0001780:intron 50.0%
CAGCTGAAGCTACTCTTCGA+AGG + chr1_1:3494504-3494523 Msa0001780:CDS 50.0%
! AGGCTGAACTCAAGCTTGCT+CGG + chr1_1:3494588-3494607 Msa0001780:CDS 50.0%
!! ATACCGGTTAAAGGGCACTG+AGG + chr1_1:3494668-3494687 Msa0001780:intron 50.0%
!! AAGGACTGTTCAGGTTGCCT+TGG + chr1_1:3494811-3494830 Msa0001780:CDS 50.0%
TTGGAGATCATCCACCATGG+AGG - chr1_1:3494843-3494862 None:intergenic 50.0%
! CCTCTAGTTCCCTGACAGTT+TGG - chr1_1:3495072-3495091 None:intergenic 50.0%
CCAAACTGTCAGGGAACTAG+AGG + chr1_1:3495069-3495088 Msa0001780:CDS 50.0%
AACTGTCAGGGAACTAGAGG+AGG + chr1_1:3495072-3495091 Msa0001780:CDS 50.0%
TGAAGAGCGACGATTCTTGC+AGG + chr1_1:3495392-3495411 Msa0001780:CDS 50.0%
AGGGAGAGATGCAGCAACTT+CGG + chr1_1:3495530-3495549 Msa0001780:intron 50.0%
AATTGAGCTGGAGGACACAG+AGG - chr1_1:3495892-3495911 None:intergenic 50.0%
! GTCCTAGTGTTGAGGAAAGC+TGG + chr1_1:3496155-3496174 Msa0001780:CDS 50.0%
GACCAGCTTTCCTCAACACT+AGG - chr1_1:3496160-3496179 None:intergenic 50.0%
!! GCTCAGCAACAGCTTGTTAC+TGG + chr1_1:3496489-3496508 Msa0001780:CDS 50.0%
!! AGCAACAGCTTGTTACTGGG+AGG + chr1_1:3496493-3496512 Msa0001780:CDS 50.0%
! TGTGGTGGGAGAAACGATGG+TGG - chr1_1:3488062-3488081 None:intergenic 55.0%
! GGTTGTGGTGGGAGAAACGA+TGG - chr1_1:3488065-3488084 None:intergenic 55.0%
GTGTAGCAGTCCCAGTGCAA+TGG - chr1_1:3489057-3489076 None:intergenic 55.0%
CGTCGGCGTAGGATAGCAAA+TGG - chr1_1:3492842-3492861 None:intergenic 55.0%
CATGCAATGTTCGTCGGCGT+AGG - chr1_1:3492853-3492872 None:intergenic 55.0%
CTACGCCGACGAACATTGCA+TGG + chr1_1:3492851-3492870 Msa0001780:five_prime_UTR 55.0%
! GGCTGAATTTTCCGGTGACG+TGG + chr1_1:3493294-3493313 Msa0001780:CDS 55.0%
TGACGTGGGAATGGAACCGA+CGG + chr1_1:3493309-3493328 Msa0001780:CDS 55.0%
TTGGGCTGAATTACAGGGCC+GGG + chr1_1:3493930-3493949 Msa0001780:intron 55.0%
CTGGTCCGGGATTCAAATCC+CGG + chr1_1:3494125-3494144 Msa0001780:intron 55.0%
AAGGGTCCATGCTGCTCAGA+AGG + chr1_1:3494523-3494542 Msa0001780:CDS 55.0%
CGTCATCCTTCTGAGCAGCA+TGG - chr1_1:3494532-3494551 None:intergenic 55.0%
! ACTCAAGCTTGCTCGGCAAG+AGG + chr1_1:3494595-3494614 Msa0001780:CDS 55.0%
CAGCCTCAGTGCCCTTTAAC+CGG - chr1_1:3494674-3494693 None:intergenic 55.0%
!! TGTTCAGGTTGCCTTGGCCA+AGG + chr1_1:3494817-3494836 Msa0001780:CDS 55.0%
ATCATCCACCATGGAGGCCT+TGG - chr1_1:3494837-3494856 None:intergenic 55.0%
GTATCACCATCACCTCTCCC+AGG + chr1_1:3494985-3495004 Msa0001780:intron 55.0%
TTTCCTCCTGGGAGAGGTGA+TGG - chr1_1:3494994-3495013 None:intergenic 55.0%
GCATAGACTGAAGGTGGCAG+AGG + chr1_1:3495033-3495052 Msa0001780:CDS 55.0%
AGAGCGACGATTCTTGCAGG+TGG + chr1_1:3495395-3495414 Msa0001780:intron 55.0%
GGGAGAGATGCAGCAACTTC+GGG + chr1_1:3495531-3495550 Msa0001780:intron 55.0%
TTCCACCCAGGGATTGTCGT+CGG - chr1_1:3495800-3495819 None:intergenic 55.0%
!! TGATGGTGGCTCTAGGTCAC+TGG + chr1_1:3495944-3495963 Msa0001780:CDS 55.0%
!! GTGGCTCTAGGTCACTGGAA+AGG + chr1_1:3495949-3495968 Msa0001780:CDS 55.0%
GGCAAAGAAGATGCGAAGGG+AGG + chr1_1:3496368-3496387 Msa0001780:CDS 55.0%
GGAGGTAGCTGTCATGGAGA+AGG + chr1_1:3496386-3496405 Msa0001780:CDS 55.0%
GGTAGCTGTCATGGAGAAGG+AGG + chr1_1:3496389-3496408 Msa0001780:CDS 55.0%
AGCTGTCATGGAGAAGGAGG+TGG + chr1_1:3496392-3496411 Msa0001780:CDS 55.0%
!! ATGGTGGTGGCGGAAGCTGT+GGG - chr1_1:3488046-3488065 None:intergenic 60.0%
!! GGGAGAAACGATGGTGGTGG+CGG - chr1_1:3488056-3488075 None:intergenic 60.0%
! GGTGGGAGAAACGATGGTGG+TGG - chr1_1:3488059-3488078 None:intergenic 60.0%
GCTGAAACAGGCCATCTCGG+CGG - chr1_1:3488086-3488105 None:intergenic 60.0%
GAAACGAGCCCGGAGTTGCT+AGG - chr1_1:3488218-3488237 None:intergenic 60.0%
GGCATCAGTGAGATCGGCGA+TGG + chr1_1:3493273-3493292 Msa0001780:exon 60.0%
CGGTTCCATTCCCACGTCAC+CGG - chr1_1:3493308-3493327 None:intergenic 60.0%
GGTGGCCGGGATTTGAATCC+CGG - chr1_1:3494133-3494152 None:intergenic 60.0%
!! CGGTTAAAGGGCACTGAGGC+TGG + chr1_1:3494672-3494691 Msa0001780:intron 60.0%
TCACCATCACCTCTCCCAGG+AGG + chr1_1:3494988-3495007 Msa0001780:intron 60.0%
CTAGAGGAGGCTGTCCTTGC+AGG + chr1_1:3495085-3495104 Msa0001780:CDS 60.0%
CCTTCCCGACGACAATCCCT+GGG + chr1_1:3495792-3495811 Msa0001780:CDS 60.0%
TCCACCCAGGGATTGTCGTC+GGG - chr1_1:3495799-3495818 None:intergenic 60.0%
GCGAAGGGAGGTAGCTGTCA+TGG + chr1_1:3496380-3496399 Msa0001780:CDS 60.0%
!! GATGGTGGTGGCGGAAGCTG+TGG - chr1_1:3488047-3488066 None:intergenic 65.0%
TCCCACCACAACCGCCGAGA+TGG + chr1_1:3488072-3488091 Msa0001780:five_prime_UTR 65.0%
GCCATCTCGGCGGTTGTGGT+GGG - chr1_1:3488076-3488095 None:intergenic 65.0%
ACAGGCCATCTCGGCGGTTG+TGG - chr1_1:3488080-3488099 None:intergenic 65.0%
CGTGGGAATGGAACCGACGG+TGG + chr1_1:3493312-3493331 Msa0001780:CDS 65.0%
CCGGAAACCGTCAACGGCAC+CGG - chr1_1:3493343-3493362 None:intergenic 65.0%
!! CCGGTGCCGTTGACGGTTTC+CGG + chr1_1:3493340-3493359 Msa0001780:CDS 65.0%
TGCCTTGGCCAAGGCCTCCA+TGG + chr1_1:3494826-3494845 Msa0001780:CDS 65.0%
CACCATGGAGGCCTTGGCCA+AGG - chr1_1:3494831-3494850 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG + chr1_1:3494829-3494848 Msa0001780:CDS 65.0%
GAGGAGGCTGTCCTTGCAGG+CGG + chr1_1:3495088-3495107 Msa0001780:CDS 65.0%
TTGCAGCAGCACCGCCTGCA+AGG - chr1_1:3495102-3495121 None:intergenic 65.0%
!! TCGGGAGTTGGCTCGTGCCA+AGG + chr1_1:3495287-3495306 Msa0001780:CDS 65.0%
GCCTTCCCGACGACAATCCC+TGG + chr1_1:3495791-3495810 Msa0001780:CDS 65.0%
CCCAGGGATTGTCGTCGGGA+AGG - chr1_1:3495795-3495814 None:intergenic 65.0%
TCCCGACGACAATCCCTGGG+TGG + chr1_1:3495795-3495814 Msa0001780:CDS 65.0%
GGCCATCTCGGCGGTTGTGG+TGG - chr1_1:3488077-3488096 None:intergenic 70.0%
! GGAACCGACGGTGGTGACGC+CGG + chr1_1:3493321-3493340 Msa0001780:CDS 70.0%
!! GGTGACGCCGGTGCCGTTGA+CGG + chr1_1:3493333-3493352 Msa0001780:CDS 70.0%
GGAGGTGGCTGCAATGCGCG+TGG + chr1_1:3496407-3496426 Msa0001780:CDS 70.0%
!! GGCACCGGCGTCACCACCGT+CGG - chr1_1:3493328-3493347 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3487982 3497140 3487982 ID=Msa0001780;Name=Msa0001780
chr1_1 mRNA 3487982 3497140 3487982 ID=Msa0001780-mRNA-1;Parent=Msa0001780;Name=Msa0001780-mRNA-1;_AED=0.15;_eAED=0.15;_QI=3085|0.92|0.93|0.93|0.71|0.66|15|0|642
chr1_1 exon 3487982 3488271 3487982 ID=Msa0001780-mRNA-1:exon:1001;Parent=Msa0001780-mRNA-1
chr1_1 exon 3488819 3489098 3488819 ID=Msa0001780-mRNA-1:exon:1002;Parent=Msa0001780-mRNA-1
chr1_1 exon 3489236 3489294 3489236 ID=Msa0001780-mRNA-1:exon:1003;Parent=Msa0001780-mRNA-1
chr1_1 exon 3489759 3491244 3489759 ID=Msa0001780-mRNA-1:exon:1004;Parent=Msa0001780-mRNA-1
chr1_1 exon 3492322 3493505 3492322 ID=Msa0001780-mRNA-1:exon:1005;Parent=Msa0001780-mRNA-1
chr1_1 exon 3493592 3493677 3493592 ID=Msa0001780-mRNA-1:exon:1006;Parent=Msa0001780-mRNA-1
chr1_1 exon 3494291 3494356 3494291 ID=Msa0001780-mRNA-1:exon:1007;Parent=Msa0001780-mRNA-1
chr1_1 exon 3494446 3494616 3494446 ID=Msa0001780-mRNA-1:exon:1008;Parent=Msa0001780-mRNA-1
chr1_1 exon 3494734 3494904 3494734 ID=Msa0001780-mRNA-1:exon:1009;Parent=Msa0001780-mRNA-1
chr1_1 exon 3495007 3495162 3495007 ID=Msa0001780-mRNA-1:exon:1010;Parent=Msa0001780-mRNA-1
chr1_1 exon 3495267 3495413 3495267 ID=Msa0001780-mRNA-1:exon:1011;Parent=Msa0001780-mRNA-1
chr1_1 exon 3495532 3495603 3495532 ID=Msa0001780-mRNA-1:exon:1012;Parent=Msa0001780-mRNA-1
chr1_1 exon 3495690 3496223 3495690 ID=Msa0001780-mRNA-1:exon:1013;Parent=Msa0001780-mRNA-1
chr1_1 exon 3496321 3496514 3496321 ID=Msa0001780-mRNA-1:exon:1014;Parent=Msa0001780-mRNA-1
chr1_1 exon 3497023 3497140 3497023 ID=Msa0001780-mRNA-1:exon:1015;Parent=Msa0001780-mRNA-1
chr1_1 five_prime_UTR 3487982 3488271 3487982 ID=Msa0001780-mRNA-1:five_prime_utr;Parent=Msa0001780-mRNA-1
chr1_1 five_prime_UTR 3488819 3489098 3488819 ID=Msa0001780-mRNA-1:five_prime_utr;Parent=Msa0001780-mRNA-1
chr1_1 five_prime_UTR 3489236 3489294 3489236 ID=Msa0001780-mRNA-1:five_prime_utr;Parent=Msa0001780-mRNA-1
chr1_1 five_prime_UTR 3489759 3491244 3489759 ID=Msa0001780-mRNA-1:five_prime_utr;Parent=Msa0001780-mRNA-1
chr1_1 five_prime_UTR 3492322 3493291 3492322 ID=Msa0001780-mRNA-1:five_prime_utr;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3493292 3493505 3493292 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3493592 3493677 3493592 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3494291 3494356 3494291 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3494446 3494616 3494446 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3494734 3494904 3494734 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3495007 3495162 3495007 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3495267 3495413 3495267 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3495532 3495603 3495532 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3495690 3496223 3495690 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3496321 3496514 3496321 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
chr1_1 CDS 3497023 3497140 3497023 ID=Msa0001780-mRNA-1:cds;Parent=Msa0001780-mRNA-1
Gene Sequence

>Msa0001780

ATGGCTGAATTTTCCGGTGACGTGGGAATGGAACCGACGGTGGTGACGCCGGTGCCGTTGACGGTTTCCGGATCGTTTAAGGAAGGGAAAAACTCATCACGAAGACGTACGCATTCGATGAGACCTAGTTTGGATGCGGATGAGTTCATGAACTTGCTTCATGGTTCGGATCCAGTGAAACTGGAGCTTAATCGACTTGAGAATGATGTTAGAGATAAGGATAGAGAATTATCAGAAGCACAAGCAGAGATCAAAGCGTTGAAACACTCTGAAAGACTTAGAGAAAAAGCTGTTGAAGAGCTTACTGAAGAATTGTCGAAGGTAGATGGAAAGCTGAAGTTTACAGAAAATCTTCTAGAAAGCAAAAATCTCGAAATAAAGAAAATCAATGATGAAAAGAAAGCATCGATGGCAGCTCAGTTTGCAGCTGAAGCTACTCTTCGAAGGGTCCATGCTGCTCAGAAGGATGACGACATGCCTCCTATAGAAGCCATTCTAGCTCCTTTAGAGGCTGAACTCAAGCTTGCTCGGCAAGAGATTGCTAAACTTCAAGATGATAACAGAGCTTTGGACCGTCTTACGAAATCTAAGGAAGCAGCACTTCTTGAAGCTGAAAGGACTGTTCAGGTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAATAAAAATCAGGAGCTAATGAAACAGATTGAGATTTGCCAGGAGGAAAACAAAATTTTGGACAGAATGCATAGACTGAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTCAGGGAACTAGAGGAGGCTGTCCTTGCAGGCGGTGCTGCTGCAAATGCTGTGAGAGATTATCAGCGAAAATTTCAAGAAATGAATGAAGAAAGAAAAACTCTCGATCGGGAGTTGGCTCGTGCCAAGGTAACAGCAAACAGAGTAGCTGTAGTAGTGGCTAATGAATGGAAAGATGCTAATGACAAAGTGATGCCTGTAAAACAATGGCTTGAAGAGCGACGATTCTTGCAGGGAGAGATGCAGCAACTTCGGGATAAGCTTGCTATATCTGATCGCACTGCAAAGTATGAAGCACAGTTAAAAGAAAAATATCAATTACGGCTTAAAGTGCTACAAGAGAGTTTGAGAGAAACTTCTAACAGTATTAATCGCGGCACTTCAGAGGGAAAATGTGTTAGCAATGGGCCTTCCCGACGACAATCCCTGGGTGGAACAGATAGCATATCCAAACCCAACTCTAATGGGTTTCTGACTAAGAGAACATCATCCTTTCAAATAAGGTCCTCTGTGTCCTCCAGCTCAATTTTGAAGAATGCTAAAGGCGCATCTAAGTCTTTTGATGGTGGCTCTAGGTCACTGGAAAGGAGTAAAATTCTTCTAAATGGAAAGCCACCAAGTTCGTCGTTTAACCAGTCTTCTGAAAGAACTAAAGACAAAGAGGAAAACAATAATTGGAAAGGAAGTTTGGATGATAAGCCAAATGACTTGCCATTAGTAGATATAGAGGATAATGTTCCAGGAGTTTTGTATGATTTGCTGCAGAAAGAGGTCCTAGTGTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGACGATGCCATTGAGATGCTAGCAAAAAAAGTGGATACATTGACCAAAGCTATGGAAGTTGAGGCAAAGAAGATGCGAAGGGAGGTAGCTGTCATGGAGAAGGAGGTGGCTGCAATGCGCGTGGACAAAGAACAAGAGACAAAAGCCAAGCGTTTCAGCAATGTGAAGAGCCCTATGAACAGTGCTCAGCAACAGCTTGTTACTGGGAGTTCATTCTTCTTTGAACTGATCGTTATCATTTATCGCAAACTAGATTTAGTTCAAGGTGCTTTGTTAACTTTTTCTCAACCTGTTGAATATGTTCCAAGTTTCAAATGGGTGTTCTAG
Protein sequence

>Msa0001780

MAEFSGDVGMEPTVVTPVPLTVSGSFKEGKNSSRRRTHSMRPSLDADEFMNLLHGSDPVKLELNRLENDVRDKDRELSEAQAEIKALKHSERLREKAVEELTEELSKVDGKLKFTENLLESKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAERTVQVALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRLKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKTLDRELARAKVTANRVAVVVANEWKDANDKVMPVKQWLEERRFLQGEMQQLRDKLAISDRTAKYEAQLKEKYQLRLKVLQESLRETSNSINRGTSEGKCVSNGPSRRQSLGGTDSISKPNSNGFLTKRTSSFQIRSSVSSSSILKNAKGASKSFDGGSRSLERSKILLNGKPPSSSFNQSSERTKDKEENNNWKGSLDDKPNDLPLVDIEDNVPGVLYDLLQKEVLVLRKAGHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAVMEKEVAAMRVDKEQETKAKRFSNVKSPMNSAQQQLVTGSSFFFELIVIIYRKLDLVQGALLTFSQPVEYVPSFKWVF*