AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108160 MtrunA17_Chr7g0241761 95.847 313 13 0 1 313 1 313 0.0 625
Msa1108160 MtrunA17_Chr5g0429521 58.675 317 106 9 7 312 1 303 1.45e-114 333
Msa1108160 MtrunA17_Chr3g0104071 53.231 325 115 12 11 311 5 316 1.53e-102 303
Msa1108160 MtrunA17_Chr5g0436501 62.500 208 69 2 11 216 3 203 7.32e-87 261
Msa1108160 MtrunA17_Chr1g0162081 51.031 194 84 2 30 215 7 197 1.64e-56 184
Msa1108160 MtrunA17_Chr1g0210471 50.000 182 74 4 33 208 22 192 2.83e-53 174
Msa1108160 MtrunA17_Chr4g0062741 38.214 280 130 7 30 278 3 270 2.46e-51 171
Msa1108160 MtrunA17_Chr8g0365011 36.434 258 125 8 33 275 6 239 2.77e-36 131
Msa1108160 MtrunA17_Chr6g0488471 78.873 71 15 0 134 204 91 161 4.12e-33 123
Msa1108160 MtrunA17_Chr2g0331031 74.648 71 18 0 135 205 104 174 6.25e-31 119
Msa1108160 MtrunA17_Chr4g0055931 70.667 75 22 0 132 206 87 161 1.33e-30 117
Msa1108160 MtrunA17_Chr8g0389241 76.056 71 16 1 134 204 99 168 1.71e-30 116
Msa1108160 MtrunA17_Chr5g0415191 67.949 78 25 0 134 211 96 173 2.04e-27 108
Msa1108160 MtrunA17_Chr4g0059701 66.667 78 26 0 128 205 72 149 1.54e-25 103
Msa1108160 MtrunA17_Chr3g0135671 48.718 117 53 3 98 214 54 163 4.06e-25 100
Msa1108160 MtrunA17_Chr3g0092621 54.545 77 35 0 140 216 84 160 2.59e-23 94.4
Msa1108160 MtrunA17_Chr5g0432941 33.333 192 110 5 34 223 21 196 5.46e-23 94.7
Msa1108160 MtrunA17_Chr5g0432921 34.359 195 105 7 34 223 20 196 1.52e-22 93.6
Msa1108160 MtrunA17_Chr5g0440731 53.086 81 35 1 129 206 94 174 1.70e-22 95.1
Msa1108160 MtrunA17_Chr5g0440741 55.696 79 32 1 131 206 91 169 3.92e-22 94.0
Msa1108160 MtrunA17_Chr5g0409841 57.534 73 29 1 136 206 88 160 7.12e-21 89.4
Msa1108160 MtrunA17_Chr5g0409831 57.895 76 29 1 136 208 73 148 5.71e-20 86.7
Msa1108160 MtrunA17_Chr6g0452791 72.917 48 13 0 140 187 80 127 3.95e-19 83.2
Msa1108160 MtrunA17_Chr8g0364741 36.975 119 64 2 31 148 6 114 1.14e-18 80.5
Msa1108160 MtrunA17_Chr3g0141601 50.000 78 36 1 33 107 5 82 3.68e-18 78.2
Msa1108160 MtrunA17_Chr8g0364731 60.294 68 25 1 150 215 11 78 6.61e-18 80.1
Msa1108160 MtrunA17_Chr1g0155181 48.611 72 37 0 30 101 2 73 8.60e-18 77.0
Msa1108160 MtrunA17_Chr5g0404101 46.667 75 40 0 23 97 7 81 2.49e-17 75.9
Msa1108160 MtrunA17_Chr3g0144631 50.000 68 34 0 33 100 14 81 9.50e-17 73.9
Msa1108160 MtrunA17_Chr8g0373131 50.000 70 34 1 32 101 2 70 4.01e-16 72.0
Msa1108160 MtrunA17_Chr8g0373111 50.000 70 34 1 32 101 2 70 4.19e-16 72.0
Msa1108160 MtrunA17_Chr8g0373121 50.000 70 34 1 32 101 2 70 4.19e-16 72.0
Msa1108160 MtrunA17_Chr6g0449111 44.928 69 38 0 30 98 5 73 1.65e-15 70.5
Msa1108160 MtrunA17_Chr7g0255841 53.030 66 31 0 38 103 15 80 1.40e-14 68.2
Msa1108160 MtrunA17_Chr3g0081631 43.529 85 38 2 35 118 10 85 1.07e-13 65.9
Msa1108160 MtrunA17_Chr8g0373101 47.143 70 36 1 32 101 2 70 1.15e-13 65.1
Msa1108160 MtrunA17_Chr3g0113121 48.000 75 32 1 142 209 97 171 1.93e-13 68.6
Msa1108160 MtrunA17_Chr1g0192061 52.113 71 29 2 142 208 63 132 4.55e-13 66.6
Msa1108160 MtrunA17_Chr5g0404301 49.206 63 31 1 33 95 2 63 6.20e-13 62.8
Msa1108160 MtrunA17_Chr8g0370121 44.068 59 33 0 128 186 88 146 4.84e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108160 AT2G38090.1 75.238 210 45 2 7 209 1 210 6.03e-117 339
Msa1108160 AT5G58900.1 64.651 215 59 5 11 211 1 212 7.81e-91 272
Msa1108160 AT5G01200.1 59.821 224 65 6 2 209 1 215 2.47e-83 253
Msa1108160 AT3G11280.2 58.937 207 66 4 11 209 1 196 9.99e-76 233
Msa1108160 AT3G11280.1 58.937 207 66 4 11 209 1 196 9.99e-76 233
Msa1108160 AT5G05790.2 60.638 188 67 3 33 218 29 211 5.28e-72 224
Msa1108160 AT5G05790.1 60.638 188 67 3 33 218 29 211 5.28e-72 224
Msa1108160 AT5G08520.1 50.000 188 91 2 30 215 7 193 1.99e-54 179
Msa1108160 AT1G49010.1 48.500 200 80 4 33 210 6 204 9.65e-50 168
Msa1108160 AT5G04760.1 47.027 185 86 3 33 217 4 176 1.48e-47 159
Msa1108160 AT5G23650.1 45.304 181 91 3 32 207 10 187 2.18e-44 154
Msa1108160 AT3G10580.2 38.043 184 92 4 38 220 11 173 5.72e-32 120
Msa1108160 AT5G47390.1 76.712 73 17 0 132 204 88 160 1.09e-31 122
Msa1108160 AT3G10580.1 38.043 184 92 4 38 220 11 173 1.12e-31 120
Msa1108160 AT5G61620.1 56.436 101 37 1 111 211 86 179 7.23e-29 113
Msa1108160 AT5G56840.1 59.551 89 34 2 135 221 86 174 1.25e-27 107
Msa1108160 AT1G70000.1 72.222 72 20 0 134 205 92 163 1.34e-26 105
Msa1108160 AT1G70000.2 72.222 72 20 0 134 205 92 163 1.34e-26 105
Msa1108160 AT4G09450.1 37.572 173 87 3 34 206 6 157 2.16e-26 103
Msa1108160 AT3G16350.1 84.906 53 8 0 135 187 132 184 2.07e-25 105
Msa1108160 AT1G19000.2 64.935 77 27 0 136 212 98 174 1.44e-24 100
Msa1108160 AT1G19000.1 64.935 77 27 0 136 212 98 174 1.44e-24 100
Msa1108160 AT1G74840.2 80.769 52 10 0 135 186 91 142 1.45e-23 97.1
Msa1108160 AT1G74840.1 80.769 52 10 0 135 186 91 142 2.00e-23 97.4
Msa1108160 AT3G10590.1 35.204 196 118 7 34 226 6 195 4.85e-20 87.0
Msa1108160 AT1G75250.2 53.731 67 31 0 33 99 10 76 3.43e-17 75.9
Msa1108160 AT1G75250.1 53.731 67 31 0 33 99 10 76 1.04e-16 75.5
Msa1108160 AT4G39250.1 48.485 66 34 0 35 100 14 79 1.81e-15 71.2
Msa1108160 AT2G21650.1 47.761 67 35 0 35 101 14 80 4.25e-14 67.8
Msa1108160 AT1G19510.1 44.872 78 40 1 38 115 15 89 7.74e-14 67.0
Msa1108160 AT2G18328.1 46.032 63 34 0 39 101 15 77 8.27e-12 60.5

Find 103 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAACCAATTGGAATTT+TGG 0.118121 7_3:-50830311 None:intergenic
TTGTAGCAAAACTATATATT+TGG 0.123980 7_3:+50832307 Msa1108160:three_prime_UTR
ACGAAGGCGGTTTCATTTCT+TGG 0.231424 7_3:-50831644 None:intergenic
TATTTCATTAGGCAGCTTTC+AGG 0.241192 7_3:+50831570 Msa1108160:CDS
TATTAATAATTAATAAATTC+TGG 0.249828 7_3:+50830022 Msa1108160:five_prime_UTR
TGTAGCAAAACTATATATTT+GGG 0.257492 7_3:+50832308 Msa1108160:three_prime_UTR
AACTTAGAACATAAGGGTTT+TGG 0.266830 7_3:-50829895 None:intergenic
TTTAGATTCCTTAGTTATTT+GGG 0.278161 7_3:+50830079 Msa1108160:five_prime_UTR
TTCATAAATTCTAATTACTA+TGG 0.287478 7_3:-50831982 None:intergenic
TGTTTGATAATATGCTTCTT+TGG 0.301353 7_3:+50830140 Msa1108160:five_prime_UTR
GCATATTATCAAACAGCATT+TGG 0.304060 7_3:-50830132 None:intergenic
TACAAAAGTGGAAGTTCTTA+TGG 0.330111 7_3:-50830163 None:intergenic
ACATAGTTCCATGAGTGAAT+TGG 0.333627 7_3:-50832236 None:intergenic
AGGGTTGCTGAGATGATTCC+TGG 0.340116 7_3:+50830429 Msa1108160:CDS
TCCTTCTTCTCTGGACCATT+TGG 0.345458 7_3:+50831680 Msa1108160:CDS
TTGGAGTGAAATTAAGCAAC+TGG 0.359489 7_3:-50829876 None:intergenic
TGCTTTGGCTTATTATGATA+AGG 0.376321 7_3:+50830386 Msa1108160:CDS
AAGACAGTGATCTATGAAAC+AGG 0.390474 7_3:-50829648 None:intergenic
CATATTATCAAACAGCATTT+GGG 0.398281 7_3:-50830131 None:intergenic
ACATCAAAACTTAGAACATA+AGG 0.400885 7_3:-50829902 None:intergenic
TTAGTTGAATTGAAAACAAA+TGG 0.411456 7_3:-50831789 None:intergenic
ACGCTCAGAAGTATTTCATT+AGG 0.411813 7_3:+50831559 Msa1108160:CDS
AAAAGTATGGCAAGGGAGAC+TGG 0.414734 7_3:+50831481 Msa1108160:CDS
CCTATATCCAAAATTCCAAT+TGG 0.417676 7_3:+50830304 Msa1108160:CDS
TGATGTGATTAAACAGTATA+GGG 0.417708 7_3:+50830464 Msa1108160:CDS
GCTGGTTTGATACCAGTTCC+TGG 0.417898 7_3:+50830516 Msa1108160:CDS
TAGTATCAAAAGGTGAAAAC+TGG 0.419071 7_3:-50831905 None:intergenic
GCAACCCTTATCCATCTATC+AGG 0.422928 7_3:-50830414 None:intergenic
TAAGCTCTTTGAGAATGCTT+TGG 0.425147 7_3:+50830371 Msa1108160:CDS
TTCTCTGGACCATTTGGTGA+AGG 0.432138 7_3:+50831686 Msa1108160:CDS
ATAAGGATACTCCTGATAGA+TGG 0.435285 7_3:+50830403 Msa1108160:CDS
AAGTAACGATCCTTCTTCTC+TGG 0.444961 7_3:+50831671 Msa1108160:CDS
ACAAATGGCATGCCTTCATC+TGG 0.446288 7_3:-50831774 None:intergenic
TTCAGCTACCCAAATAACTA+AGG 0.451392 7_3:-50830087 None:intergenic
TTTGTCCAGCATGGTTAAGC+AGG 0.451543 7_3:+50831734 Msa1108160:CDS
TTTCAGGAGGGAAGGATAAG+AGG 0.455606 7_3:+50831586 Msa1108160:CDS
GATGTGTGTGTTATTGAAGC+TGG 0.457311 7_3:+50830498 Msa1108160:CDS
CATCAAAACTTAGAACATAA+GGG 0.460742 7_3:-50829901 None:intergenic
CATATAATTCCACTCTATGT+AGG 0.471260 7_3:-50832146 None:intergenic
ATACTCCTGATAGATGGATA+AGG 0.478456 7_3:+50830409 Msa1108160:CDS
GATTTGCAACCTTCACCAAA+TGG 0.478639 7_3:-50831695 None:intergenic
GTGATGTGATTAAACAGTAT+AGG 0.483162 7_3:+50830463 Msa1108160:CDS
GACTGGAAATTACCAGATGA+AGG 0.483800 7_3:+50831762 Msa1108160:CDS
TACTCCTGATAGATGGATAA+GGG 0.485001 7_3:+50830410 Msa1108160:CDS
AATGAAAGAAAGAGAGAGAG+AGG 0.487113 7_3:-50829608 None:intergenic
ACCAAATGGTCCAGAGAAGA+AGG 0.487953 7_3:-50831681 None:intergenic
TTCTTCCTTTCCTGCTCCGA+CGG 0.488987 7_3:-50830642 None:intergenic
CTAGTTGTATAACCAGGAAC+TGG 0.504989 7_3:-50830528 None:intergenic
CAAAGGGGCTGAGTTGTGAT+TGG 0.509591 7_3:-50829584 None:intergenic
AGAGAGATAAGCTACAAAAG+TGG 0.511057 7_3:-50830175 None:intergenic
ATTTGCAAAATAGTATCAAA+AGG 0.512642 7_3:-50831915 None:intergenic
CTCGGCCGTCGGAGCAGGAA+AGG 0.514515 7_3:+50830637 Msa1108160:CDS
CTATGCTCCTCTTCAGTCCA+TGG 0.515244 7_3:-50830672 None:intergenic
GAGATGAAAATAAGCATAAG+TGG 0.519517 7_3:-50829738 None:intergenic
TTCACAAGAATCGAAATCAC+CGG 0.522859 7_3:+50831848 Msa1108160:CDS
GATTGACCACTGTGATATCA+TGG 0.524764 7_3:-50831620 None:intergenic
AACTAAAGGAAACATGTTTG+TGG 0.525249 7_3:+50831806 Msa1108160:CDS
TGGTTAAGCAGGAATTTGAC+TGG 0.530767 7_3:+50831745 Msa1108160:CDS
GGTATCCATGATGAGTGCTT+CGG 0.532341 7_3:-50831884 None:intergenic
AAATTCCTGCTTAACCATGC+TGG 0.533010 7_3:-50831739 None:intergenic
ATGTAGTTCCAATTCACTCA+TGG 0.543564 7_3:+50832228 Msa1108160:three_prime_UTR
GAATCATAATTTGTCCAGCA+TGG 0.552113 7_3:+50831725 Msa1108160:CDS
TCACTCATGGAACTATGTAA+AGG 0.559728 7_3:+50832241 Msa1108160:three_prime_UTR
TTCATTAGGCAGCTTTCAGG+AGG 0.562103 7_3:+50831573 Msa1108160:CDS
GCGTGACTTGCGACTTGAGT+TGG 0.567575 7_3:-50831540 None:intergenic
ATGTTTGTGGCACCGTCGTG+CGG 0.567658 7_3:+50831819 Msa1108160:CDS
TCACAAGAATCGAAATCACC+GGG 0.573301 7_3:+50831849 Msa1108160:CDS
TGTTTGTGGCACCGTCGTGC+GGG 0.575136 7_3:+50831820 Msa1108160:CDS
TTATCTAGAACAATGAATAG+AGG 0.579227 7_3:+50830258 Msa1108160:CDS
GAGACTGGAGAAACATCTCT+AGG 0.579618 7_3:+50831496 Msa1108160:CDS
TAGGCAGCTTTCAGGAGGGA+AGG 0.581740 7_3:+50831578 Msa1108160:CDS
AAGTGGTTCGACTCGGCCGT+CGG 0.583732 7_3:+50830626 Msa1108160:CDS
AGGGGCTGAGTTGTGATTGG+TGG 0.584811 7_3:-50829581 None:intergenic
TCGGAGCAGGAAAGGAAGAA+AGG 0.584815 7_3:+50830645 Msa1108160:CDS
GTACTCCGAAGCACTCATCA+TGG 0.587369 7_3:+50831879 Msa1108160:CDS
TGGAGTGAAATTAAGCAACT+GGG 0.591258 7_3:-50829875 None:intergenic
ATTATCAAACAGCATTTGGG+TGG 0.594579 7_3:-50830128 None:intergenic
GACTTGAGTTGGTGTTCTTG+TGG 0.595027 7_3:-50831529 None:intergenic
TTGGATTGGGATAACAGTGA+AGG 0.598870 7_3:+50830561 Msa1108160:CDS
TCGTTACTTTCTGACGAAGG+CGG 0.604880 7_3:-50831657 None:intergenic
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 7_3:+50830655 Msa1108160:CDS
CATGGACTGAAGAGGAGCAT+AGG 0.606328 7_3:+50830673 Msa1108160:CDS
GAGGATCTTCCTACATAGAG+TGG 0.606785 7_3:+50832137 Msa1108160:three_prime_UTR
TGGATTGGGATAACAGTGAA+GGG 0.609140 7_3:+50830562 Msa1108160:CDS
GTAGCAAAACTATATATTTG+GGG 0.615395 7_3:+50832309 Msa1108160:three_prime_UTR
AGGTGTGCCATGGACTGAAG+AGG 0.618331 7_3:+50830665 Msa1108160:CDS
GGAAAAGAAGTGGTTCGACT+CGG 0.625707 7_3:+50830619 Msa1108160:CDS
CTGGACAAATTATGATTCTG+TGG 0.628813 7_3:-50831720 None:intergenic
AGTGTTGGTGGGAAAAGAAG+TGG 0.631430 7_3:+50830609 Msa1108160:CDS
TGTACTTTAACAGATTTGTG+AGG 0.635184 7_3:+50832118 Msa1108160:three_prime_UTR
AAAGAGCTAGTTGTATAACC+AGG 0.644968 7_3:-50830534 None:intergenic
ATGTACTAGAATAGAACTAG+TGG 0.646388 7_3:+50832278 Msa1108160:three_prime_UTR
GGATCGTTACTTTCTGACGA+AGG 0.646642 7_3:-50831660 None:intergenic
TTGTGAAAGAAGAAGTGAAG+TGG 0.648643 7_3:-50829712 None:intergenic
TCATTAGGCAGCTTTCAGGA+GGG 0.651718 7_3:+50831574 Msa1108160:CDS
GCAGCATCAATGAACTGAGG+AGG 0.656599 7_3:+50831947 Msa1108160:exon
TGGTTGTTTCAAGAAAACAA+TGG 0.668637 7_3:+50830324 Msa1108160:CDS
AGACAGTGATCTATGAAACA+GGG 0.679917 7_3:-50829647 None:intergenic
TGTGAAGAAATCCCGCACGA+CGG 0.712958 7_3:-50831831 None:intergenic
TATGCAGCATCAATGAACTG+AGG 0.716248 7_3:+50831944 Msa1108160:exon
ATGAAAATAAGCATAAGTGG+TGG 0.742414 7_3:-50829735 None:intergenic
CACAAGAATCGAAATCACCG+GGG 0.784252 7_3:+50831850 Msa1108160:CDS
AAGTATCCATGATATCACAG+TGG 0.791298 7_3:+50831614 Msa1108160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGCATTTTTAAAC+TGG + chr7_3:50829852-50829871 Msa1108160:five_prime_UTR 15.0%
!!! TTTTTTTTTCTTTTCTCTTT+TGG + chr7_3:50829952-50829971 Msa1108160:five_prime_UTR 15.0%
!!! ATTTTAGTTAGTGAAATTAT+AGG + chr7_3:50830788-50830807 Msa1108160:intron 15.0%
!! TTCATAAATTCTAATTACTA+TGG - chr7_3:50831985-50832004 None:intergenic 15.0%
!! ATAACTAAGGAATCTAAAAA+AGG - chr7_3:50830077-50830096 None:intergenic 20.0%
!!! TTTTAGATTCCTTAGTTATT+TGG + chr7_3:50830078-50830097 Msa1108160:five_prime_UTR 20.0%
!! TTTAGATTCCTTAGTTATTT+GGG + chr7_3:50830079-50830098 Msa1108160:five_prime_UTR 20.0%
!!! CCATTTTCTAACATTATTAA+CGG - chr7_3:50831209-50831228 None:intergenic 20.0%
!! TATGGTTGATTAACATAAAA+AGG - chr7_3:50831440-50831459 None:intergenic 20.0%
!!! TTTTTATGTTAATCAACCAT+AGG + chr7_3:50831439-50831458 Msa1108160:intron 20.0%
!! TTAGTTGAATTGAAAACAAA+TGG - chr7_3:50831792-50831811 None:intergenic 20.0%
!!! TTTGTTTTCAATTCAACTAA+AGG + chr7_3:50831792-50831811 Msa1108160:CDS 20.0%
!! ATTTGCAAAATAGTATCAAA+AGG - chr7_3:50831918-50831937 None:intergenic 20.0%
!! TTGTAGCAAAACTATATATT+TGG + chr7_3:50832307-50832326 Msa1108160:three_prime_UTR 20.0%
!! TGTAGCAAAACTATATATTT+GGG + chr7_3:50832308-50832327 Msa1108160:three_prime_UTR 20.0%
!! AATGAGTCGAAGAATTTTAT+TGG - chr7_3:50829815-50829834 None:intergenic 25.0%
! CATCAAAACTTAGAACATAA+GGG - chr7_3:50829904-50829923 None:intergenic 25.0%
! ACATCAAAACTTAGAACATA+AGG - chr7_3:50829905-50829924 None:intergenic 25.0%
!!! TTATGTTCTAAGTTTTGATG+TGG + chr7_3:50829904-50829923 Msa1108160:five_prime_UTR 25.0%
!!! TATGTTCTAAGTTTTGATGT+GGG + chr7_3:50829905-50829924 Msa1108160:five_prime_UTR 25.0%
!!! TAAATTCTGGATTTTTTCCT+TGG + chr7_3:50830035-50830054 Msa1108160:five_prime_UTR 25.0%
! CATATTATCAAACAGCATTT+GGG - chr7_3:50830134-50830153 None:intergenic 25.0%
!! TGTTTGATAATATGCTTCTT+TGG + chr7_3:50830140-50830159 Msa1108160:five_prime_UTR 25.0%
!! TTATCTAGAACAATGAATAG+AGG + chr7_3:50830258-50830277 Msa1108160:CDS 25.0%
! TGATGTGATTAAACAGTATA+GGG + chr7_3:50830464-50830483 Msa1108160:CDS 25.0%
! TTAGTGAAATTATAGGTGTT+GGG + chr7_3:50830795-50830814 Msa1108160:intron 25.0%
!! AATTTTGTGCTTGAAATGAA+TGG + chr7_3:50830819-50830838 Msa1108160:intron 25.0%
! ACTTAACCAAAGAACTAATA+TGG - chr7_3:50830881-50830900 None:intergenic 25.0%
! AAAAACCTTCAATCATTCTA+GGG - chr7_3:50830933-50830952 None:intergenic 25.0%
! TAAAAACCTTCAATCATTCT+AGG - chr7_3:50830934-50830953 None:intergenic 25.0%
! ACTATGGAATCATTCTAATA+TGG - chr7_3:50830964-50830983 None:intergenic 25.0%
! AATGATTCCATAGTGTAAAT+CGG + chr7_3:50830970-50830989 Msa1108160:intron 25.0%
!!! GTTTTTGTGCTTTGAAATTA+TGG + chr7_3:50831094-50831113 Msa1108160:intron 25.0%
! CCGTTAATAATGTTAGAAAA+TGG + chr7_3:50831206-50831225 Msa1108160:intron 25.0%
! TATAATAATCTATGTAACCC+CGG - chr7_3:50831315-50831334 None:intergenic 25.0%
! GGGTTACATAGATTATTATA+TGG + chr7_3:50831315-50831334 Msa1108160:intron 25.0%
!! AACAAGTAAAGCATTTATCA+AGG - chr7_3:50831346-50831365 None:intergenic 25.0%
! TTGATAAATGCTTTACTTGT+TGG + chr7_3:50831345-50831364 Msa1108160:intron 25.0%
!! TGATTTTCTGATTACTTGTT+TGG + chr7_3:50832086-50832105 Msa1108160:three_prime_UTR 25.0%
! GTAGCAAAACTATATATTTG+GGG + chr7_3:50832309-50832328 Msa1108160:three_prime_UTR 25.0%
ATGAAAATAAGCATAAGTGG+TGG - chr7_3:50829738-50829757 None:intergenic 30.0%
GAGATGAAAATAAGCATAAG+TGG - chr7_3:50829741-50829760 None:intergenic 30.0%
TGGAACAAAAAGAATGAAGA+GGG - chr7_3:50829795-50829814 None:intergenic 30.0%
TTGGAACAAAAAGAATGAAG+AGG - chr7_3:50829796-50829815 None:intergenic 30.0%
! AACTTAGAACATAAGGGTTT+TGG - chr7_3:50829898-50829917 None:intergenic 30.0%
GCATATTATCAAACAGCATT+TGG - chr7_3:50830135-50830154 None:intergenic 30.0%
TACAAAAGTGGAAGTTCTTA+TGG - chr7_3:50830166-50830185 None:intergenic 30.0%
! CCAATTGGAATTTTGGATAT+AGG - chr7_3:50830307-50830326 None:intergenic 30.0%
CCTATATCCAAAATTCCAAT+TGG + chr7_3:50830304-50830323 Msa1108160:CDS 30.0%
! GAAACAACCAATTGGAATTT+TGG - chr7_3:50830314-50830333 None:intergenic 30.0%
! GTTTTCTTGAAACAACCAAT+TGG - chr7_3:50830322-50830341 None:intergenic 30.0%
! TGGTTGTTTCAAGAAAACAA+TGG + chr7_3:50830324-50830343 Msa1108160:CDS 30.0%
! TGCTTTGGCTTATTATGATA+AGG + chr7_3:50830386-50830405 Msa1108160:CDS 30.0%
GTGATGTGATTAAACAGTAT+AGG + chr7_3:50830463-50830482 Msa1108160:CDS 30.0%
!! TACAACTAGCTCTTTTACAT+TGG + chr7_3:50830542-50830561 Msa1108160:CDS 30.0%
! TAGCTCTTTTACATTGGATT+GGG + chr7_3:50830548-50830567 Msa1108160:CDS 30.0%
GTTAGTGAAATTATAGGTGT+TGG + chr7_3:50830794-50830813 Msa1108160:intron 30.0%
ATCGATGATTTGAATAATCG+AGG + chr7_3:50831008-50831027 Msa1108160:intron 30.0%
ATGATTTGAATAATCGAGGA+AGG + chr7_3:50831012-50831031 Msa1108160:intron 30.0%
TGTTTGAGCGATTATAAATC+AGG + chr7_3:50831136-50831155 Msa1108160:intron 30.0%
!! TATCTATGAAGCATTGATAC+TGG + chr7_3:50831173-50831192 Msa1108160:intron 30.0%
TTGAATGTAACTACACGTTT+CGG + chr7_3:50831236-50831255 Msa1108160:intron 30.0%
! AACCATAGGCAATTTTTGTT+GGG + chr7_3:50831453-50831472 Msa1108160:intron 30.0%
AACTAAAGGAAACATGTTTG+TGG + chr7_3:50831806-50831825 Msa1108160:CDS 30.0%
TAGTATCAAAAGGTGAAAAC+TGG - chr7_3:50831908-50831927 None:intergenic 30.0%
TGTACTTTAACAGATTTGTG+AGG + chr7_3:50832118-50832137 Msa1108160:three_prime_UTR 30.0%
CATATAATTCCACTCTATGT+AGG - chr7_3:50832149-50832168 None:intergenic 30.0%
! TCTCTCAACTTTTTATGAGA+AGG + chr7_3:50832194-50832213 Msa1108160:three_prime_UTR 30.0%
ATGTACTAGAATAGAACTAG+TGG + chr7_3:50832278-50832297 Msa1108160:three_prime_UTR 30.0%
AATGAAAGAAAGAGAGAGAG+AGG - chr7_3:50829611-50829630 None:intergenic 35.0%
AGACAGTGATCTATGAAACA+GGG - chr7_3:50829650-50829669 None:intergenic 35.0%
AAGACAGTGATCTATGAAAC+AGG - chr7_3:50829651-50829670 None:intergenic 35.0%
TTGTGAAAGAAGAAGTGAAG+TGG - chr7_3:50829715-50829734 None:intergenic 35.0%
TGGAGTGAAATTAAGCAACT+GGG - chr7_3:50829878-50829897 None:intergenic 35.0%
TTGGAGTGAAATTAAGCAAC+TGG - chr7_3:50829879-50829898 None:intergenic 35.0%
!!! TGGATTTTTTCCTTGGAGTT+TGG + chr7_3:50830042-50830061 Msa1108160:five_prime_UTR 35.0%
TTCAGCTACCCAAATAACTA+AGG - chr7_3:50830090-50830109 None:intergenic 35.0%
ATTATCAAACAGCATTTGGG+TGG - chr7_3:50830131-50830150 None:intergenic 35.0%
AGAGAGATAAGCTACAAAAG+TGG - chr7_3:50830178-50830197 None:intergenic 35.0%
! GAATTTTGGATATAGGAAGC+TGG - chr7_3:50830300-50830319 None:intergenic 35.0%
! TAAGCTCTTTGAGAATGCTT+TGG + chr7_3:50830371-50830390 Msa1108160:CDS 35.0%
ATAAGGATACTCCTGATAGA+TGG + chr7_3:50830403-50830422 Msa1108160:CDS 35.0%
ATACTCCTGATAGATGGATA+AGG + chr7_3:50830409-50830428 Msa1108160:CDS 35.0%
TACTCCTGATAGATGGATAA+GGG + chr7_3:50830410-50830429 Msa1108160:CDS 35.0%
ATGATTCCTGGAAAAACTGT+TGG + chr7_3:50830441-50830460 Msa1108160:CDS 35.0%
AAAGAGCTAGTTGTATAACC+AGG - chr7_3:50830537-50830556 None:intergenic 35.0%
!! CTAGCTCTTTTACATTGGAT+TGG + chr7_3:50830547-50830566 Msa1108160:CDS 35.0%
!! TTCAAGCAGTTTTGTAGTGT+TGG + chr7_3:50830594-50830613 Msa1108160:CDS 35.0%
! CATCAGCCATATTAGTTCTT+TGG + chr7_3:50830872-50830891 Msa1108160:intron 35.0%
TAAAGCCCTAGAATGATTGA+AGG + chr7_3:50830925-50830944 Msa1108160:intron 35.0%
!! TGAATCACCGATTTACACTA+TGG - chr7_3:50830980-50830999 None:intergenic 35.0%
AGAGTCAGATATCAAATGCA+AGG - chr7_3:50831373-50831392 None:intergenic 35.0%
!! ATCCAGTGTTTTTGCTTCTT+TGG + chr7_3:50831397-50831416 Msa1108160:intron 35.0%
! CAACCATAGGCAATTTTTGT+TGG + chr7_3:50831452-50831471 Msa1108160:intron 35.0%
TTGTTGGGTCTGAAAAAGTA+TGG + chr7_3:50831468-50831487 Msa1108160:CDS 35.0%
!! ACGCTCAGAAGTATTTCATT+AGG + chr7_3:50831559-50831578 Msa1108160:CDS 35.0%
TATTTCATTAGGCAGCTTTC+AGG + chr7_3:50831570-50831589 Msa1108160:CDS 35.0%
AAGTATCCATGATATCACAG+TGG + chr7_3:50831614-50831633 Msa1108160:CDS 35.0%
CTGGACAAATTATGATTCTG+TGG - chr7_3:50831723-50831742 None:intergenic 35.0%
! GAATCATAATTTGTCCAGCA+TGG + chr7_3:50831725-50831744 Msa1108160:CDS 35.0%
TTCACAAGAATCGAAATCAC+CGG + chr7_3:50831848-50831867 Msa1108160:CDS 35.0%
ATGTAGTTCCAATTCACTCA+TGG + chr7_3:50832228-50832247 Msa1108160:three_prime_UTR 35.0%
ACATAGTTCCATGAGTGAAT+TGG - chr7_3:50832239-50832258 None:intergenic 35.0%
TCACTCATGGAACTATGTAA+AGG + chr7_3:50832241-50832260 Msa1108160:three_prime_UTR 35.0%
AAAGAGAGAGAGAGGTCAAA+GGG - chr7_3:50829603-50829622 None:intergenic 40.0%
!!! GTGCTTTTTTCCAAACTCCA+AGG - chr7_3:50830055-50830074 None:intergenic 40.0%
! ACATCACCAACAGTTTTTCC+AGG - chr7_3:50830450-50830469 None:intergenic 40.0%
! GATGTGTGTGTTATTGAAGC+TGG + chr7_3:50830498-50830517 Msa1108160:CDS 40.0%
CTAGTTGTATAACCAGGAAC+TGG - chr7_3:50830531-50830550 None:intergenic 40.0%
! TTGGATTGGGATAACAGTGA+AGG + chr7_3:50830561-50830580 Msa1108160:CDS 40.0%
! TGGATTGGGATAACAGTGAA+GGG + chr7_3:50830562-50830581 Msa1108160:CDS 40.0%
!! AAGCAGTTTTGTAGTGTTGG+TGG + chr7_3:50830597-50830616 Msa1108160:CDS 40.0%
!!! AGCAGTTTTGTAGTGTTGGT+GGG + chr7_3:50830598-50830617 Msa1108160:CDS 40.0%
! GGCTGATGATTTTCAACTTC+AGG - chr7_3:50830860-50830879 None:intergenic 40.0%
ATCGAGGAAGGAAGAATCAT+TGG + chr7_3:50831024-50831043 Msa1108160:intron 40.0%
GACTTCAGAGTTTAGACTGA+AGG - chr7_3:50831293-50831312 None:intergenic 40.0%
!! TCAGTCTAAACTCTGAAGTC+CGG + chr7_3:50831293-50831312 Msa1108160:intron 40.0%
AGCCAAAGAAGCAAAAACAC+TGG - chr7_3:50831402-50831421 None:intergenic 40.0%
GACCCAACAAAAATTGCCTA+TGG - chr7_3:50831458-50831477 None:intergenic 40.0%
! GGTCTGAAAAAGTATGGCAA+GGG + chr7_3:50831474-50831493 Msa1108160:CDS 40.0%
GATTGACCACTGTGATATCA+TGG - chr7_3:50831623-50831642 None:intergenic 40.0%
AAGTAACGATCCTTCTTCTC+TGG + chr7_3:50831671-50831690 Msa1108160:CDS 40.0%
GATTTGCAACCTTCACCAAA+TGG - chr7_3:50831698-50831717 None:intergenic 40.0%
AAATTCCTGCTTAACCATGC+TGG - chr7_3:50831742-50831761 None:intergenic 40.0%
TGGTTAAGCAGGAATTTGAC+TGG + chr7_3:50831745-50831764 Msa1108160:CDS 40.0%
GACTGGAAATTACCAGATGA+AGG + chr7_3:50831762-50831781 Msa1108160:CDS 40.0%
TCACAAGAATCGAAATCACC+GGG + chr7_3:50831849-50831868 Msa1108160:CDS 40.0%
TATGCAGCATCAATGAACTG+AGG + chr7_3:50831944-50831963 Msa1108160:exon 40.0%
AAGAGAGAGAGAGGTCAAAG+GGG - chr7_3:50829602-50829621 None:intergenic 45.0%
GAAAGAGAGAGAGAGGTCAA+AGG - chr7_3:50829604-50829623 None:intergenic 45.0%
GCAACCCTTATCCATCTATC+AGG - chr7_3:50830417-50830436 None:intergenic 45.0%
!! AGTGTTGGTGGGAAAAGAAG+TGG + chr7_3:50830609-50830628 Msa1108160:CDS 45.0%
GGAAAAGAAGTGGTTCGACT+CGG + chr7_3:50830619-50830638 Msa1108160:CDS 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + chr7_3:50830655-50830674 Msa1108160:CDS 45.0%
TACACGTTTCGGTTTCGTGT+CGG + chr7_3:50831247-50831266 Msa1108160:intron 45.0%
!! CAGTCTAAACTCTGAAGTCC+GGG + chr7_3:50831294-50831313 Msa1108160:intron 45.0%
!! AGTCTAAACTCTGAAGTCCG+GGG + chr7_3:50831295-50831314 Msa1108160:intron 45.0%
! GGGTCTGAAAAAGTATGGCA+AGG + chr7_3:50831473-50831492 Msa1108160:CDS 45.0%
! AAAAGTATGGCAAGGGAGAC+TGG + chr7_3:50831481-50831500 Msa1108160:CDS 45.0%
GAGACTGGAGAAACATCTCT+AGG + chr7_3:50831496-50831515 Msa1108160:CDS 45.0%
!! GACTTGAGTTGGTGTTCTTG+TGG - chr7_3:50831532-50831551 None:intergenic 45.0%
TTCATTAGGCAGCTTTCAGG+AGG + chr7_3:50831573-50831592 Msa1108160:CDS 45.0%
TCATTAGGCAGCTTTCAGGA+GGG + chr7_3:50831574-50831593 Msa1108160:CDS 45.0%
TTTCAGGAGGGAAGGATAAG+AGG + chr7_3:50831586-50831605 Msa1108160:CDS 45.0%
ACGAAGGCGGTTTCATTTCT+TGG - chr7_3:50831647-50831666 None:intergenic 45.0%
! TCGTTACTTTCTGACGAAGG+CGG - chr7_3:50831660-50831679 None:intergenic 45.0%
! GGATCGTTACTTTCTGACGA+AGG - chr7_3:50831663-50831682 None:intergenic 45.0%
TCCTTCTTCTCTGGACCATT+TGG + chr7_3:50831680-50831699 Msa1108160:CDS 45.0%
ACCAAATGGTCCAGAGAAGA+AGG - chr7_3:50831684-50831703 None:intergenic 45.0%
! TTCTCTGGACCATTTGGTGA+AGG + chr7_3:50831686-50831705 Msa1108160:CDS 45.0%
TTTGTCCAGCATGGTTAAGC+AGG + chr7_3:50831734-50831753 Msa1108160:CDS 45.0%
ACAAATGGCATGCCTTCATC+TGG - chr7_3:50831777-50831796 None:intergenic 45.0%
CACAAGAATCGAAATCACCG+GGG + chr7_3:50831850-50831869 Msa1108160:CDS 45.0%
GGTATCCATGATGAGTGCTT+CGG - chr7_3:50831887-50831906 None:intergenic 45.0%
GAGGATCTTCCTACATAGAG+TGG + chr7_3:50832137-50832156 Msa1108160:three_prime_UTR 45.0%
!! TATTAATAATTAATAAATTC+TGG + chr7_3:50830022-50830041 Msa1108160:five_prime_UTR 5.0%
CAAAGGGGCTGAGTTGTGAT+TGG - chr7_3:50829587-50829606 None:intergenic 50.0%
AGGGTTGCTGAGATGATTCC+TGG + chr7_3:50830429-50830448 Msa1108160:CDS 50.0%
!! GCTGGTTTGATACCAGTTCC+TGG + chr7_3:50830516-50830535 Msa1108160:CDS 50.0%
TTCTTCCTTTCCTGCTCCGA+CGG - chr7_3:50830645-50830664 None:intergenic 50.0%
TCGGAGCAGGAAAGGAAGAA+AGG + chr7_3:50830645-50830664 Msa1108160:CDS 50.0%
CTATGCTCCTCTTCAGTCCA+TGG - chr7_3:50830675-50830694 None:intergenic 50.0%
! CATGGACTGAAGAGGAGCAT+AGG + chr7_3:50830673-50830692 Msa1108160:CDS 50.0%
! TTTCGGTTTCGTGTCGGCAT+TGG + chr7_3:50831253-50831272 Msa1108160:intron 50.0%
TGTGAAGAAATCCCGCACGA+CGG - chr7_3:50831834-50831853 None:intergenic 50.0%
! GTACTCCGAAGCACTCATCA+TGG + chr7_3:50831879-50831898 Msa1108160:CDS 50.0%
GCAGCATCAATGAACTGAGG+AGG + chr7_3:50831947-50831966 Msa1108160:exon 50.0%
AGGGGCTGAGTTGTGATTGG+TGG - chr7_3:50829584-50829603 None:intergenic 55.0%
! AGGTGTGCCATGGACTGAAG+AGG + chr7_3:50830665-50830684 Msa1108160:CDS 55.0%
! GCGTGACTTGCGACTTGAGT+TGG - chr7_3:50831543-50831562 None:intergenic 55.0%
TAGGCAGCTTTCAGGAGGGA+AGG + chr7_3:50831578-50831597 Msa1108160:CDS 55.0%
ATGTTTGTGGCACCGTCGTG+CGG + chr7_3:50831819-50831838 Msa1108160:CDS 55.0%
CTTCGGAGTACATTACGCCC+CGG - chr7_3:50831870-50831889 None:intergenic 55.0%
!! AAGTGGTTCGACTCGGCCGT+CGG + chr7_3:50830626-50830645 Msa1108160:CDS 60.0%
TGTTTGTGGCACCGTCGTGC+GGG + chr7_3:50831820-50831839 Msa1108160:CDS 60.0%
!! TTCGACTCGGCCGTCGGAGC+AGG + chr7_3:50830632-50830651 Msa1108160:CDS 70.0%
CTCGGCCGTCGGAGCAGGAA+AGG + chr7_3:50830637-50830656 Msa1108160:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 50829577 50832345 50829577 ID=Msa1108160;Name=Msa1108160
chr7_3 mRNA 50829577 50832345 50829577 ID=Msa1108160-mRNA-1;Parent=Msa1108160;Name=Msa1108160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=675|1|1|1|1|1|2|386|313
chr7_3 exon 50829577 50830694 50829577 ID=Msa1108160-mRNA-1:exon:10418;Parent=Msa1108160-mRNA-1
chr7_3 exon 50831461 50832345 50831461 ID=Msa1108160-mRNA-1:exon:10419;Parent=Msa1108160-mRNA-1
chr7_3 five_prime_UTR 50829577 50830251 50829577 ID=Msa1108160-mRNA-1:five_prime_utr;Parent=Msa1108160-mRNA-1
chr7_3 CDS 50830252 50830694 50830252 ID=Msa1108160-mRNA-1:cds;Parent=Msa1108160-mRNA-1
chr7_3 CDS 50831461 50831959 50831461 ID=Msa1108160-mRNA-1:cds;Parent=Msa1108160-mRNA-1
chr7_3 three_prime_UTR 50831960 50832345 50831960 ID=Msa1108160-mRNA-1:three_prime_utr;Parent=Msa1108160-mRNA-1
Gene Sequence

>Msa1108160

ATGATGTTATCTAGAACAATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCAAAATTTACTTCAGAAGAGAATAAGCTCTTTGAGAATGCTTTGGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTTTGATACCAGTTCCTGGTTATACAACTAGCTCTTTTACATTGGATTGGGATAACAGTGAAGGGTATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAAGTGGTTCGACTCGGCCGTCGGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTTTGTTGGGTCTGAAAAAGTATGGCAAGGGAGACTGGAGAAACATCTCTAGGAATTTTGTGACCACAAGAACACCAACTCAAGTCGCAAGTCACGCTCAGAAGTATTTCATTAGGCAGCTTTCAGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGATATCACAGTGGTCAATCTCCAAGAAATGAAACCGCCTTCGTCAGAAAGTAACGATCCTTCTTCTCTGGACCATTTGGTGAAGGTTGCAAATCAACCACAGAATCATAATTTGTCCAGCATGGTTAAGCAGGAATTTGACTGGAAATTACCAGATGAAGGCATGCCATTTGTTTTCAATTCAACTAAAGGAAACATGTTTGTGGCACCGTCGTGCGGGATTTCTTCACAAGAATCGAAATCACCGGGGCGTAATGTACTCCGAAGCACTCATCATGGATACCAGTTTTCACCTTTTGATACTATTTTGCAAATGCAATCTATGCAGCATCAATGA

Protein sequence

>Msa1108160

MMLSRTMNRGVEVLSPASYIQNSNWLFQENNGSKFTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNSEGYDEFKQFCSVGGKRSGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQEMKPPSSESNDPSSLDHLVKVANQPQNHNLSSMVKQEFDWKLPDEGMPFVFNSTKGNMFVAPSCGISSQESKSPGRNVLRSTHHGYQFSPFDTILQMQSMQHQ*