Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162300 | XP_003625192.1 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 632 |
| Msa1162300 | XP_003625192.1 | 98.010 | 201 | 4 | 0 | 323 | 523 | 510 | 710 | 1.20e-134 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162300 | A2Q3E1 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 632 |
| Msa1162300 | A2Q3E1 | 98.010 | 201 | 4 | 0 | 323 | 523 | 510 | 710 | 5.71e-135 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0185880 | Msa1162300 | 0.805331 | 1.405770e-49 | -8.615850e-47 |
| Msa1034900 | Msa1162300 | 0.927067 | 1.967164e-91 | -8.615850e-47 |
| Msa1074940 | Msa1162300 | 0.931001 | 7.193287e-94 | -8.615850e-47 |
| Msa1115790 | Msa1162300 | 0.849081 | 4.066206e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162300 | MtrunA17_Chr7g0258101 | 97.826 | 322 | 7 | 0 | 1 | 322 | 1 | 322 | 0.0 | 632 |
| Msa1162300 | MtrunA17_Chr7g0258101 | 98.010 | 201 | 4 | 0 | 323 | 523 | 510 | 710 | 1.10e-138 | 417 |
| Msa1162300 | MtrunA17_Chr7g0225961 | 47.027 | 185 | 89 | 4 | 340 | 521 | 800 | 978 | 2.44e-41 | 159 |
| Msa1162300 | MtrunA17_Chr7g0225961 | 55.034 | 149 | 56 | 3 | 177 | 320 | 447 | 589 | 6.04e-40 | 155 |
| Msa1162300 | MtrunA17_Chr6g0459211 | 46.734 | 199 | 100 | 3 | 323 | 521 | 703 | 895 | 1.81e-39 | 153 |
| Msa1162300 | MtrunA17_Chr6g0459211 | 46.995 | 183 | 79 | 4 | 153 | 324 | 345 | 520 | 3.82e-38 | 149 |
| Msa1162300 | MtrunA17_Chr1g0187521 | 43.000 | 200 | 93 | 7 | 322 | 521 | 812 | 990 | 2.96e-33 | 134 |
| Msa1162300 | MtrunA17_Chr1g0187521 | 33.209 | 268 | 159 | 5 | 22 | 285 | 353 | 604 | 1.44e-32 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1162300 | AT3G57780.4 | 62.983 | 181 | 59 | 3 | 344 | 523 | 498 | 671 | 1.62e-66 | 228 |
| Msa1162300 | AT3G57780.4 | 57.672 | 189 | 74 | 2 | 123 | 311 | 116 | 298 | 3.04e-61 | 213 |
| Msa1162300 | AT3G57780.1 | 62.983 | 181 | 59 | 3 | 344 | 523 | 498 | 671 | 1.62e-66 | 228 |
| Msa1162300 | AT3G57780.1 | 57.672 | 189 | 74 | 2 | 123 | 311 | 116 | 298 | 3.04e-61 | 213 |
| Msa1162300 | AT3G57780.2 | 62.983 | 181 | 59 | 3 | 344 | 523 | 498 | 671 | 1.62e-66 | 228 |
| Msa1162300 | AT3G57780.2 | 57.672 | 189 | 74 | 2 | 123 | 311 | 116 | 298 | 3.04e-61 | 213 |
| Msa1162300 | AT3G57780.3 | 62.983 | 181 | 59 | 3 | 344 | 523 | 498 | 671 | 1.62e-66 | 228 |
| Msa1162300 | AT3G57780.3 | 57.672 | 189 | 74 | 2 | 123 | 311 | 116 | 298 | 3.04e-61 | 213 |
| Msa1162300 | AT2G42320.2 | 58.209 | 201 | 59 | 6 | 322 | 521 | 492 | 668 | 5.56e-65 | 223 |
| Msa1162300 | AT2G42320.2 | 57.143 | 189 | 75 | 2 | 142 | 330 | 139 | 321 | 9.01e-63 | 217 |
| Msa1162300 | AT2G42320.1 | 58.209 | 201 | 59 | 6 | 322 | 521 | 492 | 668 | 5.56e-65 | 223 |
| Msa1162300 | AT2G42320.1 | 57.143 | 189 | 75 | 2 | 142 | 330 | 139 | 321 | 9.01e-63 | 217 |
| Msa1162300 | AT2G42320.4 | 57.143 | 189 | 75 | 2 | 142 | 330 | 139 | 321 | 3.53e-64 | 217 |
| Msa1162300 | AT2G42320.3 | 57.143 | 189 | 75 | 2 | 142 | 330 | 139 | 321 | 3.53e-64 | 217 |
| Msa1162300 | AT3G57780.5 | 57.672 | 189 | 74 | 2 | 123 | 311 | 116 | 298 | 2.25e-62 | 213 |
| Msa1162300 | AT5G06930.2 | 41.727 | 278 | 144 | 5 | 17 | 289 | 102 | 366 | 3.45e-46 | 172 |
| Msa1162300 | AT5G06930.2 | 45.455 | 176 | 80 | 3 | 345 | 519 | 562 | 722 | 6.74e-37 | 145 |
| Msa1162300 | AT5G06930.3 | 41.727 | 278 | 144 | 5 | 17 | 289 | 102 | 366 | 3.45e-46 | 172 |
| Msa1162300 | AT5G06930.3 | 45.455 | 176 | 80 | 3 | 345 | 519 | 562 | 722 | 6.74e-37 | 145 |
| Msa1162300 | AT5G06930.1 | 41.727 | 278 | 144 | 5 | 17 | 289 | 102 | 366 | 3.45e-46 | 172 |
| Msa1162300 | AT5G06930.1 | 45.455 | 176 | 80 | 3 | 345 | 519 | 562 | 722 | 6.74e-37 | 145 |
| Msa1162300 | AT3G01810.1 | 56.552 | 145 | 60 | 2 | 178 | 321 | 403 | 545 | 6.90e-40 | 155 |
| Msa1162300 | AT3G01810.1 | 44.134 | 179 | 84 | 4 | 345 | 521 | 753 | 917 | 1.87e-35 | 142 |
| Msa1162300 | AT3G01810.3 | 56.552 | 145 | 60 | 2 | 178 | 321 | 403 | 545 | 6.90e-40 | 155 |
| Msa1162300 | AT3G01810.3 | 44.134 | 179 | 84 | 4 | 345 | 521 | 753 | 917 | 1.87e-35 | 142 |
| Msa1162300 | AT3G01810.2 | 56.552 | 145 | 60 | 2 | 178 | 321 | 403 | 545 | 6.90e-40 | 155 |
| Msa1162300 | AT3G01810.2 | 44.134 | 179 | 84 | 4 | 345 | 521 | 753 | 917 | 1.87e-35 | 142 |
| Msa1162300 | AT5G43230.1 | 57.273 | 110 | 39 | 2 | 182 | 286 | 361 | 467 | 1.32e-31 | 130 |
| Msa1162300 | AT5G43230.1 | 37.234 | 188 | 109 | 4 | 334 | 521 | 664 | 842 | 5.63e-30 | 125 |
Find 162 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGATTCAGGTTAACTTTC+TGG | 0.107816 | 7_4:-52954851 | Msa1162300:intron |
| AAAATGAATGTCAGGAATTT+AGG | 0.196472 | 7_4:-52952488 | Msa1162300:three_prime_UTR |
| TACTGTTTCTGGCCTTATTT+TGG | 0.209652 | 7_4:-52954991 | Msa1162300:CDS |
| TCAGTCTTTCATTGATTATA+CGG | 0.219799 | 7_4:-52953253 | Msa1162300:CDS |
| AATAAACAGACAAGATATTT+TGG | 0.219821 | 7_4:-52952434 | Msa1162300:three_prime_UTR |
| ATTGCCAAGAATACTGTTTC+TGG | 0.221335 | 7_4:-52955002 | Msa1162300:CDS |
| TTCTGTCCTGACGCGGTTCC+AGG | 0.227836 | 7_4:-52953203 | Msa1162300:CDS |
| CACCTGCGCGGCGCCTTTCT+AGG | 0.229152 | 7_4:-52955073 | Msa1162300:CDS |
| TCTGAGAAGTTACGTACTTT+AGG | 0.262914 | 7_4:-52956063 | Msa1162300:five_prime_UTR |
| ACAACTGGAGCCGCGCTATA+AGG | 0.276595 | 7_4:+52952833 | None:intergenic |
| TAGTAGTGAGAGAGTGTTTA+GGG | 0.282242 | 7_4:+52957781 | None:intergenic |
| TTATTAAGGATGATGGATTT+AGG | 0.287768 | 7_4:-52952151 | Msa1162300:three_prime_UTR |
| TGATAATCACTCCACTGATT+TGG | 0.300525 | 7_4:-52955717 | Msa1162300:CDS |
| GAGATAATTTCACAAGCATT+TGG | 0.301700 | 7_4:-52954804 | Msa1162300:CDS |
| TCATCGATATATGCTTATTA+AGG | 0.303343 | 7_4:-52952165 | Msa1162300:three_prime_UTR |
| ATGATTTAGCAACCAAAATA+AGG | 0.316584 | 7_4:+52954979 | None:intergenic |
| GGTTAAGGAAATTGAAATCT+TGG | 0.322169 | 7_4:-52955327 | Msa1162300:CDS |
| ATCAACTACTTCGTGAAGTT+TGG | 0.328969 | 7_4:-52952568 | Msa1162300:CDS |
| ATTCTTTAATGCTACTCTTA+AGG | 0.333131 | 7_4:+52952342 | None:intergenic |
| TCACAAGCATTTGGGAATTC+CGG | 0.335945 | 7_4:-52954795 | Msa1162300:CDS |
| ATTTCCTTAACCTCTATAAC+AGG | 0.338096 | 7_4:+52955338 | None:intergenic |
| CGCGGTTCCAGGAGCTGTCT+TGG | 0.351188 | 7_4:-52953192 | Msa1162300:CDS |
| AAGGCCAGAAACAGTATTCT+TGG | 0.354379 | 7_4:+52954998 | None:intergenic |
| GCTCCCAAAAGACATGCTTA+TGG | 0.367269 | 7_4:-52953399 | Msa1162300:CDS |
| GAAACGAAACGAAACGAAAC+AGG | 0.367325 | 7_4:+52957440 | None:intergenic |
| CTATCCATAAGCATGTCTTT+TGG | 0.368140 | 7_4:+52953395 | None:intergenic |
| AAAACCTGTTATAGAGGTTA+AGG | 0.378511 | 7_4:-52955342 | Msa1162300:CDS |
| TGACCCAGCCAACCTCATAA+TGG | 0.379222 | 7_4:+52954761 | None:intergenic |
| ATGAGGTTGGCTGGGTCAAA+TGG | 0.379911 | 7_4:-52954756 | Msa1162300:CDS |
| CATTTCCTGATTTACCATTT+GGG | 0.383540 | 7_4:+52954682 | None:intergenic |
| TTCACGAAGTAGTTGATATC+TGG | 0.384114 | 7_4:+52952574 | None:intergenic |
| AGTCCCATTATGAGGTTGGC+TGG | 0.390091 | 7_4:-52954765 | Msa1162300:CDS |
| ATGATGGATTTAGGAATTCA+TGG | 0.392575 | 7_4:-52952142 | Msa1162300:three_prime_UTR |
| TAAAAGTGCATACACAATCT+TGG | 0.392703 | 7_4:+52956110 | None:intergenic |
| AGATAATTTCACAAGCATTT+GGG | 0.392815 | 7_4:-52954803 | Msa1162300:CDS |
| TCGTCGTTCTCACTGTTCTC+TGG | 0.395693 | 7_4:+52953488 | None:intergenic |
| CAAGCATACCTCTCCGTTCA+AGG | 0.396892 | 7_4:+52953166 | None:intergenic |
| AGTTCCTGCAAAAGTTTCTT+CGG | 0.400597 | 7_4:-52955387 | Msa1162300:CDS |
| GCTTTCATCTATCATTGATA+AGG | 0.400694 | 7_4:-52952672 | Msa1162300:CDS |
| CTCTGCCACATTGGCTGACG+AGG | 0.405100 | 7_4:+52952799 | None:intergenic |
| CAACTGGAGCCGCGCTATAA+GGG | 0.408164 | 7_4:+52952834 | None:intergenic |
| GGAAGTCTGCATCACTGAAA+TGG | 0.412726 | 7_4:-52954713 | Msa1162300:CDS |
| TATATGCTTATTAAGGATGA+TGG | 0.415256 | 7_4:-52952158 | Msa1162300:three_prime_UTR |
| GACCCAGCCAACCTCATAAT+GGG | 0.418748 | 7_4:+52954762 | None:intergenic |
| CACTCATTTATCATTACTTA+CGG | 0.419057 | 7_4:-52957578 | Msa1162300:five_prime_UTR |
| AAACTGCAATCAAAGGTAAC+AGG | 0.421068 | 7_4:-52955497 | Msa1162300:CDS |
| GATTTAGGAATTCATGGCCT+TGG | 0.422108 | 7_4:-52952136 | Msa1162300:three_prime_UTR |
| AACTTTCACTGGCTTAGTAT+TGG | 0.428733 | 7_4:+52955406 | None:intergenic |
| AACTTCTCAGAATTGTGCTT+CGG | 0.431945 | 7_4:+52956075 | None:intergenic |
| ATCTTGGATGGATCTTCTAA+TGG | 0.439235 | 7_4:-52955311 | Msa1162300:CDS |
| AAATTGTACGTTAAAATGAT+AGG | 0.439544 | 7_4:+52957672 | None:intergenic |
| GTAGTAGTGAGAGAGTGTTT+AGG | 0.445905 | 7_4:+52957780 | None:intergenic |
| AAGGCCTCCAAGACAGCTCC+TGG | 0.449202 | 7_4:+52953185 | None:intergenic |
| CATTGATGCTGAAGATTGTT+CGG | 0.456507 | 7_4:-52953519 | Msa1162300:intron |
| ACAGCTCCTGGAACCGCGTC+AGG | 0.460610 | 7_4:+52953197 | None:intergenic |
| GTAGCGACTGTTGGAGATGA+AGG | 0.463021 | 7_4:+52952647 | None:intergenic |
| AAATCTATAAACTCAAATAA+AGG | 0.465368 | 7_4:-52955461 | Msa1162300:CDS |
| AAAAGTGCATACACAATCTT+GGG | 0.467370 | 7_4:+52956111 | None:intergenic |
| CAGTCTTTCATTGATTATAC+GGG | 0.471953 | 7_4:-52953252 | Msa1162300:CDS |
| CATCTTGACAAGTGCCTCCT+CGG | 0.474427 | 7_4:+52955757 | None:intergenic |
| TCTCCAACAGTCGCTACAAA+TGG | 0.474955 | 7_4:-52952641 | Msa1162300:CDS |
| GAAGGTCACTCAAGTCGTTA+AGG | 0.475334 | 7_4:+52953426 | None:intergenic |
| CAGCCGATACATTCCTTGTC+AGG | 0.475846 | 7_4:+52952747 | None:intergenic |
| GCTATAAGGGAAGCTTCTAA+TGG | 0.478309 | 7_4:+52952847 | None:intergenic |
| GGGTCTGCCAAGAGGAATGA+TGG | 0.478703 | 7_4:-52954735 | Msa1162300:CDS |
| ATTTCATCTTTAGACTATTG+TGG | 0.482559 | 7_4:-52952891 | Msa1162300:intron |
| TTTCCATTTGTAGCGACTGT+TGG | 0.485899 | 7_4:+52952638 | None:intergenic |
| AGCCTAGAAAGGCGCCGCGC+AGG | 0.486438 | 7_4:+52955071 | None:intergenic |
| ACAGTCGCTACAAATGGAAA+TGG | 0.487763 | 7_4:-52952635 | Msa1162300:CDS |
| GCAGAGAAAGTTGCAGAGGC+AGG | 0.490544 | 7_4:-52952782 | Msa1162300:CDS |
| TAGAAAGCAATCGTGGATCA+AGG | 0.491210 | 7_4:-52955544 | Msa1162300:CDS |
| AGGTGAGGATGGTGCGGCTA+TGG | 0.492044 | 7_4:-52955225 | Msa1162300:CDS |
| ATATACATGCTTGTAAGCAT+TGG | 0.492208 | 7_4:-52955046 | Msa1162300:CDS |
| GGTTCCAGGAGCTGTCTTGG+AGG | 0.494180 | 7_4:-52953189 | Msa1162300:CDS |
| AAGGAAATTGAAATCTTGGA+TGG | 0.494656 | 7_4:-52955323 | Msa1162300:CDS |
| GAGGGAGGCATATACACAAC+TGG | 0.497820 | 7_4:+52952818 | None:intergenic |
| AAATGGAAAGGTATCCCAAA+TGG | 0.503103 | 7_4:-52954696 | Msa1162300:intron |
| TTGAGATGATAATGAATCCT+TGG | 0.504553 | 7_4:+52955646 | None:intergenic |
| CATGCGGTAATGATGTTTCA+AGG | 0.509862 | 7_4:-52954959 | Msa1162300:intron |
| GTAAGCATTGGACCCCGAAA+AGG | 0.511380 | 7_4:-52955034 | Msa1162300:CDS |
| TTGCTCTTTCTCCAAATCAG+TGG | 0.511690 | 7_4:+52955706 | None:intergenic |
| TGTGCTGAGCTACCATGCTC+TGG | 0.514422 | 7_4:+52955107 | None:intergenic |
| TACCCTACCCGTGTTTCTTG+TGG | 0.519147 | 7_4:-52957635 | Msa1162300:five_prime_UTR |
| AGACTTCCCATCATTCCTCT+TGG | 0.520311 | 7_4:+52954728 | None:intergenic |
| TGAGGTTGGCTGGGTCAAAT+GGG | 0.521117 | 7_4:-52954755 | Msa1162300:CDS |
| GTCCCATTATGAGGTTGGCT+GGG | 0.521850 | 7_4:-52954764 | Msa1162300:CDS |
| AACAAATAAACTGCAATCAA+AGG | 0.522793 | 7_4:-52955504 | Msa1162300:CDS |
| TTCACAAGTTTCACATCACA+TGG | 0.525118 | 7_4:+52952544 | None:intergenic |
| GTTTCTTCGGAATCTTCTGA+AGG | 0.525949 | 7_4:-52955374 | Msa1162300:CDS |
| GTCAAGTCAGTCCCATTATG+AGG | 0.532212 | 7_4:-52954773 | Msa1162300:CDS |
| TTATCAAACAAACATGAAGA+AGG | 0.532376 | 7_4:+52952300 | None:intergenic |
| TGCAACTTTCTCTGCCACAT+TGG | 0.532567 | 7_4:+52952790 | None:intergenic |
| TAGTTGATATCTGGCATTTG+TGG | 0.536534 | 7_4:+52952583 | None:intergenic |
| CATAATGGGACTGACTTGAC+CGG | 0.541186 | 7_4:+52954776 | None:intergenic |
| TATAATCAATGAAAGACTGA+TGG | 0.542526 | 7_4:+52953256 | None:intergenic |
| ATTGTTAATGCTGAAGAAAA+CGG | 0.544073 | 7_4:-52955251 | Msa1162300:CDS |
| TTGATATCTGGCATTTGTGG+TGG | 0.552983 | 7_4:+52952586 | None:intergenic |
| GCGTCAGGACAGAACTCATC+CGG | 0.556096 | 7_4:+52953212 | None:intergenic |
| GCATCAGAATACGACATTGG+AGG | 0.563961 | 7_4:-52952208 | Msa1162300:three_prime_UTR |
| GTAGTGAGAGAGTGTTTAGG+GGG | 0.564465 | 7_4:+52957783 | None:intergenic |
| CATGTATATAGAGCCTAGAA+AGG | 0.566272 | 7_4:+52955060 | None:intergenic |
| AAGTAATGATAAATGAGTGT+GGG | 0.566986 | 7_4:+52957582 | None:intergenic |
| GCTGTCTTGGAGGCCTTGAA+CGG | 0.568733 | 7_4:-52953179 | Msa1162300:CDS |
| TATTCTATTGTACCAGAGCA+TGG | 0.572688 | 7_4:-52955119 | Msa1162300:CDS |
| ACGAATTGAAAATCTTGAAG+AGG | 0.573568 | 7_4:-52955177 | Msa1162300:CDS |
| GAGGAAAGTGTCACCTGACA+AGG | 0.576148 | 7_4:-52952760 | Msa1162300:CDS |
| AGTCAGTCCCATTATGAGGT+TGG | 0.581356 | 7_4:-52954769 | Msa1162300:CDS |
| ATCAATGAAAGACTGATGGA+TGG | 0.583203 | 7_4:+52953260 | None:intergenic |
| AACCACAAGAAACACGGGTA+GGG | 0.583440 | 7_4:+52957633 | None:intergenic |
| AAGGATTCATTATCATCTCA+AGG | 0.584015 | 7_4:-52955644 | Msa1162300:CDS |
| GCCACATTGGCTGACGAGGG+AGG | 0.584527 | 7_4:+52952803 | None:intergenic |
| TAAGTAATGATAAATGAGTG+TGG | 0.586492 | 7_4:+52957581 | None:intergenic |
| AGAACAGTGAGAACGACGAA+AGG | 0.586884 | 7_4:-52953484 | Msa1162300:CDS |
| AGAAAGCAATCGTGGATCAA+GGG | 0.587886 | 7_4:-52955543 | Msa1162300:CDS |
| TTTGATTAAAATATGTACCA+AGG | 0.590671 | 7_4:+52952119 | None:intergenic |
| TATGGATAGACAAGTCAGCC+AGG | 0.590801 | 7_4:-52953381 | Msa1162300:CDS |
| AATGGTAATCACAAAGAGCA+AGG | 0.592592 | 7_4:-52952617 | Msa1162300:CDS |
| TGTGGCAGAGAAAGTTGCAG+AGG | 0.593717 | 7_4:-52952786 | Msa1162300:CDS |
| GGAACTAACCACAAGAAACA+CGG | 0.597003 | 7_4:+52957627 | None:intergenic |
| TCTAATGGCGCTCAAAGTGT+AGG | 0.597901 | 7_4:-52955296 | Msa1162300:CDS |
| TCACCTGACAAGGAATGTAT+CGG | 0.598938 | 7_4:-52952750 | Msa1162300:CDS |
| TCTGCCACATTGGCTGACGA+GGG | 0.600905 | 7_4:+52952800 | None:intergenic |
| AACAGTTAAACACGTTACGT+TGG | 0.601717 | 7_4:+52957606 | None:intergenic |
| GGTCTGCCAAGAGGAATGAT+GGG | 0.603431 | 7_4:-52954734 | Msa1162300:CDS |
| TAATGAATCCTTGGTTGTAT+CGG | 0.604817 | 7_4:+52955655 | None:intergenic |
| TCTGCATCACTGAAATGGAA+AGG | 0.604858 | 7_4:-52954708 | Msa1162300:CDS |
| GAGAGAAGTTGCTGCTCTCG+AGG | 0.605091 | 7_4:-52955150 | Msa1162300:CDS |
| TACAAGCGATGAAGAACTTG+AGG | 0.609830 | 7_4:-52952708 | Msa1162300:CDS |
| CGGTGAAGGTGAGGATGGTG+CGG | 0.610273 | 7_4:-52955231 | Msa1162300:CDS |
| AATTATCTCTCTCAGAACAA+TGG | 0.623116 | 7_4:+52954818 | None:intergenic |
| GCATGGTAGCTCAGCACACA+AGG | 0.626811 | 7_4:-52955102 | Msa1162300:CDS |
| GACAAGACAGAACAGAGAAG+AGG | 0.627213 | 7_4:+52957462 | None:intergenic |
| TAAGCATCAGAATACGACAT+TGG | 0.627866 | 7_4:-52952211 | Msa1162300:three_prime_UTR |
| GAGAAAGTTGCAGAGGCAGG+AGG | 0.628672 | 7_4:-52952779 | Msa1162300:CDS |
| AATTCTTTAGAAAGCAATCG+TGG | 0.631921 | 7_4:-52955551 | Msa1162300:CDS |
| GCCTCCCTCGTCAGCCAATG+TGG | 0.632177 | 7_4:-52952804 | Msa1162300:CDS |
| TAGAAGCTTCCCTTATAGCG+CGG | 0.638046 | 7_4:-52952843 | Msa1162300:CDS |
| GAAAACGGTGAAGGTGAGGA+TGG | 0.639739 | 7_4:-52955236 | Msa1162300:CDS |
| GGAATGTATCGGCTGTTCAG+CGG | 0.642042 | 7_4:-52952739 | Msa1162300:CDS |
| CGTACTTTAGGAGCTTGCCA+AGG | 0.645481 | 7_4:-52956051 | Msa1162300:intron |
| AGTAATGATAAATGAGTGTG+GGG | 0.645987 | 7_4:+52957583 | None:intergenic |
| ATGGTAATCACAAAGAGCAA+GGG | 0.648700 | 7_4:-52952616 | Msa1162300:CDS |
| GGTCAAATGGGTCTGCCAAG+AGG | 0.653307 | 7_4:-52954743 | Msa1162300:CDS |
| TAACCACAAGAAACACGGGT+AGG | 0.653894 | 7_4:+52957632 | None:intergenic |
| GAACTAACCACAAGAAACAC+GGG | 0.655458 | 7_4:+52957628 | None:intergenic |
| GGTTCTCTGTAACTTCACTC+CGG | 0.666443 | 7_4:-52953231 | Msa1162300:CDS |
| GAGAACGACGAAAGGCGAGG+TGG | 0.669891 | 7_4:-52953476 | Msa1162300:CDS |
| GTATCGGCTGTTCAGCGGAG+AGG | 0.672594 | 7_4:-52952734 | Msa1162300:CDS |
| GGATGATGTCAACAGGTCCG+AGG | 0.673674 | 7_4:-52955774 | Msa1162300:intron |
| ACAACACATTACTAATCCCG+AGG | 0.675280 | 7_4:-52957723 | Msa1162300:five_prime_UTR |
| AGTGAGAACGACGAAAGGCG+AGG | 0.682233 | 7_4:-52953479 | Msa1162300:CDS |
| AGTAGTGAGAGAGTGTTTAG+GGG | 0.684314 | 7_4:+52957782 | None:intergenic |
| CTTGGAGGCCTTGAACGGAG+AGG | 0.685220 | 7_4:-52953174 | Msa1162300:intron |
| TGTGGAACGTAGAATGTCAG+CGG | 0.685466 | 7_4:-52952873 | Msa1162300:CDS |
| TTATCAATGATAGATGAAAG+CGG | 0.686319 | 7_4:+52952674 | None:intergenic |
| TGATGTCAACAGGTCCGAGG+AGG | 0.688664 | 7_4:-52955771 | Msa1162300:intron |
| GGATGAGTTCTGTCCTGACG+CGG | 0.692057 | 7_4:-52953210 | Msa1162300:CDS |
| TGAAGAAAACGGTGAAGGTG+AGG | 0.702094 | 7_4:-52955240 | Msa1162300:CDS |
| AATGCTGAAGAAAACGGTGA+AGG | 0.708600 | 7_4:-52955245 | Msa1162300:CDS |
| ACAAGGTTCACACACCTGCG+CGG | 0.727930 | 7_4:-52955085 | Msa1162300:CDS |
| ATACGACACCGATACAACCA+AGG | 0.730986 | 7_4:-52955663 | Msa1162300:CDS |
| GGATAGACAAGTCAGCCAGG+AGG | 0.755346 | 7_4:-52953378 | Msa1162300:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTAAAATTAATAAAAT+TGG | - | chr7_4:52955369-52955388 | Msa1162300:CDS | 0.0% |
| !!! | TATTTAAAATTAATAAAATT+GGG | - | chr7_4:52955370-52955389 | Msa1162300:CDS | 0.0% |
| !! | ATAAGAATATTGAAAATTAT+TGG | - | chr7_4:52952957-52952976 | Msa1162300:intron | 10.0% |
| !! | AATAAAATAAAAAAATCTGT+TGG | + | chr7_4:52953105-52953124 | None:intergenic | 10.0% |
| !! | GAAAATTTGAATTTATAATT+TGG | - | chr7_4:52956074-52956093 | Msa1162300:five_prime_UTR | 10.0% |
| !! | TTTAGTCAAAAGTTAATTAA+AGG | - | chr7_4:52952844-52952863 | Msa1162300:CDS | 15.0% |
| !! | AATTTGAGAAAATGAAATAA+TGG | + | chr7_4:52953214-52953233 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr7_4:52953219-52953238 | Msa1162300:CDS | 15.0% |
| !! | AAATCTATAAACTCAAATAA+AGG | - | chr7_4:52954430-52954449 | Msa1162300:intron | 15.0% |
| !! | TCATAAATTAAATACTTATG+TGG | - | chr7_4:52956542-52956561 | Msa1162300:intron | 15.0% |
| !!! | GTTTATTTTTATTATTATGC+AGG | - | chr7_4:52956603-52956622 | Msa1162300:intron | 15.0% |
| !! | ATTCAGAAGATTAAAAAATA+TGG | - | chr7_4:52957434-52957453 | Msa1162300:five_prime_UTR | 15.0% |
| !! | AAATTGTACGTTAAAATGAT+AGG | + | chr7_4:52952222-52952241 | None:intergenic | 20.0% |
| !! | GGAAACAAAATTAAAGAAAA+GGG | + | chr7_4:52952573-52952592 | None:intergenic | 20.0% |
| !! | AGGAAACAAAATTAAAGAAA+AGG | + | chr7_4:52952574-52952593 | None:intergenic | 20.0% |
| !! | AATTAAAGTACGAAATGAAA+TGG | + | chr7_4:52952719-52952738 | None:intergenic | 20.0% |
| !! | TAAATTAAGATCTAGGAATT+AGG | + | chr7_4:52952808-52952827 | None:intergenic | 20.0% |
| !! | AAAATAAAAAAATCTGTTGG+TGG | + | chr7_4:52953102-52953121 | None:intergenic | 20.0% |
| !! | TTAATTTCACTACTTAAGAT+TGG | - | chr7_4:52953290-52953309 | Msa1162300:intron | 20.0% |
| !!! | TGTCCAATTTTTTTTTATAC+TGG | - | chr7_4:52953469-52953488 | Msa1162300:CDS | 20.0% |
| !!! | CTTTATGGTTTTTCATTTTT+TGG | - | chr7_4:52953568-52953587 | Msa1162300:intron | 20.0% |
| !!! | ATAAGTTTCTGAATTTTCTA+AGG | + | chr7_4:52954076-52954095 | None:intergenic | 20.0% |
| !! | GGAATCAAAAATTAAAGAAA+TGG | - | chr7_4:52954687-52954706 | Msa1162300:intron | 20.0% |
| !! | AAAATTAATAAAATTGGGGA+AGG | - | chr7_4:52955375-52955394 | Msa1162300:CDS | 20.0% |
| !! | AAATTAATAAAATTGGGGAA+GGG | - | chr7_4:52955376-52955395 | Msa1162300:CDS | 20.0% |
| !!! | CTTTTTGTTTTTATACTGAT+CGG | - | chr7_4:52956022-52956041 | Msa1162300:intron | 20.0% |
| !! | AAACTTGATATAACTACAAA+TGG | - | chr7_4:52956180-52956199 | Msa1162300:intron | 20.0% |
| !!! | TTTGTCATATAATTGATTTG+AGG | - | chr7_4:52956221-52956240 | Msa1162300:intron | 20.0% |
| !! | TTCACAACTAATGATAATAT+TGG | - | chr7_4:52956795-52956814 | Msa1162300:intron | 20.0% |
| !!! | AAGTATTCTGAATTTGAAAT+GGG | - | chr7_4:52956879-52956898 | Msa1162300:intron | 20.0% |
| !! | TGAAATTAAAATTGCAGTAA+AGG | + | chr7_4:52956910-52956929 | None:intergenic | 20.0% |
| !!! | AATAAACAGACAAGATATTT+TGG | - | chr7_4:52957457-52957476 | Msa1162300:five_prime_UTR | 20.0% |
| !! | TTCATTACTAGGAAAAATTA+AGG | - | chr7_4:52957485-52957504 | Msa1162300:five_prime_UTR | 20.0% |
| !! | TATTTATATACACCCAAAAA+AGG | + | chr7_4:52957524-52957543 | None:intergenic | 20.0% |
| !! | TTTGATTAAAATATGTACCA+AGG | + | chr7_4:52957775-52957794 | None:intergenic | 20.0% |
| ! | AAGTAATGATAAATGAGTGT+GGG | + | chr7_4:52952312-52952331 | None:intergenic | 25.0% |
| ! | TAAGTAATGATAAATGAGTG+TGG | + | chr7_4:52952313-52952332 | None:intergenic | 25.0% |
| ! | CACTCATTTATCATTACTTA+CGG | - | chr7_4:52952313-52952332 | Msa1162300:three_prime_UTR | 25.0% |
| ! | GAAAGAAAATAGTAGTGAAA+GGG | + | chr7_4:52952551-52952570 | None:intergenic | 25.0% |
| ! | AACAAATTGTGTTAATGTAG+CGG | - | chr7_4:52952762-52952781 | Msa1162300:CDS | 25.0% |
| ! | GAATGGTTAAATTAAGATCT+AGG | + | chr7_4:52952815-52952834 | None:intergenic | 25.0% |
| !!! | ACTTTTGACTAAATCAACAA+AGG | + | chr7_4:52952837-52952856 | None:intergenic | 25.0% |
| ! | TTGTTCACAAATATAATGAG+TGG | - | chr7_4:52953136-52953155 | Msa1162300:intron | 25.0% |
| ! | TACTACATAGATTGTATGTT+TGG | - | chr7_4:52953249-52953268 | Msa1162300:CDS | 25.0% |
| !! | TTGTATGTTTGGTTCATTAT+AGG | - | chr7_4:52953260-52953279 | Msa1162300:CDS | 25.0% |
| ! | ACACGTAGTTATAAAACAAA+TGG | + | chr7_4:52953391-52953410 | None:intergenic | 25.0% |
| ! | AGGCCAGTATAAAAAAAAAT+TGG | + | chr7_4:52953475-52953494 | None:intergenic | 25.0% |
| !!! | TTTAAGCACTATATTTTTGC+AGG | - | chr7_4:52953716-52953735 | Msa1162300:intron | 25.0% |
| ! | AAAAGAAACTGAATCTAAGA+TGG | - | chr7_4:52954050-52954069 | Msa1162300:intron | 25.0% |
| ! | GAAAATCTAGTTACATTATG+TGG | - | chr7_4:52954096-52954115 | Msa1162300:intron | 25.0% |
| ! | TTCAAAAGATCCAAAAAGTA+AGG | - | chr7_4:52954309-52954328 | Msa1162300:intron | 25.0% |
| ! | AACAAATAAACTGCAATCAA+AGG | - | chr7_4:52954387-52954406 | Msa1162300:intron | 25.0% |
| ! | ATTGTTAATGCTGAAGAAAA+CGG | - | chr7_4:52954640-52954659 | Msa1162300:intron | 25.0% |
| ! | ATGATTTAGCAACCAAAATA+AGG | + | chr7_4:52954915-52954934 | None:intergenic | 25.0% |
| ! | AGATAATTTCACAAGCATTT+GGG | - | chr7_4:52955088-52955107 | Msa1162300:CDS | 25.0% |
| ! | AATTAATAAAATTGGGGAAG+GGG | - | chr7_4:52955377-52955396 | Msa1162300:CDS | 25.0% |
| !! | TATTTTACAACAATCCTGAA+GGG | - | chr7_4:52955438-52955457 | Msa1162300:CDS | 25.0% |
| ! | TAGATTAAAATTCATTCACC+AGG | - | chr7_4:52955814-52955833 | Msa1162300:intron | 25.0% |
| ! | TTCATAGATACTGTAAAGAA+TGG | + | chr7_4:52956148-52956167 | None:intergenic | 25.0% |
| !!! | AAATGGATTAGCAAAATATG+TGG | - | chr7_4:52956197-52956216 | Msa1162300:intron | 25.0% |
| ! | AATTTATGAAATTAACCTCC+TGG | + | chr7_4:52956531-52956550 | None:intergenic | 25.0% |
| ! | ATAAATACAATGACAACGTA+AGG | + | chr7_4:52956579-52956598 | None:intergenic | 25.0% |
| !! | CGTTGTCATTGTATTTATTT+TGG | - | chr7_4:52956581-52956600 | Msa1162300:intron | 25.0% |
| ! | TATAATCAATGAAAGACTGA+TGG | + | chr7_4:52956638-52956657 | None:intergenic | 25.0% |
| !! | TCAGTCTTTCATTGATTATA+CGG | - | chr7_4:52956638-52956657 | Msa1162300:intron | 25.0% |
| !! | GAAGTATTCTGAATTTGAAA+TGG | - | chr7_4:52956878-52956897 | Msa1162300:intron | 25.0% |
| !!! | ACTGCAATTTTAATTTCACT+TGG | - | chr7_4:52956912-52956931 | Msa1162300:intron | 25.0% |
| ! | ATTTCATCTTTAGACTATTG+TGG | - | chr7_4:52957000-52957019 | Msa1162300:intron | 25.0% |
| ! | TTATCAATGATAGATGAAAG+CGG | + | chr7_4:52957220-52957239 | None:intergenic | 25.0% |
| ! | CTAAAGTAAAAATGAATGTC+AGG | - | chr7_4:52957395-52957414 | Msa1162300:intron | 25.0% |
| ! | AAAATGAATGTCAGGAATTT+AGG | - | chr7_4:52957403-52957422 | Msa1162300:intron | 25.0% |
| !!! | TTTTGGAATTCTTCATTACT+AGG | - | chr7_4:52957474-52957493 | Msa1162300:five_prime_UTR | 25.0% |
| ! | ATTCTTTAATGCTACTCTTA+AGG | + | chr7_4:52957552-52957571 | None:intergenic | 25.0% |
| ! | TTATCAAACAAACATGAAGA+AGG | + | chr7_4:52957594-52957613 | None:intergenic | 25.0% |
| ! | TCATCGATATATGCTTATTA+AGG | - | chr7_4:52957726-52957745 | Msa1162300:five_prime_UTR | 25.0% |
| ! | TATATGCTTATTAAGGATGA+TGG | - | chr7_4:52957733-52957752 | Msa1162300:five_prime_UTR | 25.0% |
| !!! | TTATTAAGGATGATGGATTT+AGG | - | chr7_4:52957740-52957759 | Msa1162300:five_prime_UTR | 25.0% |
| AGTAATGATAAATGAGTGTG+GGG | + | chr7_4:52952311-52952330 | None:intergenic | 30.0% | |
| GGAAAGAAAATAGTAGTGAA+AGG | + | chr7_4:52952552-52952571 | None:intergenic | 30.0% | |
| TGACTAAATCAACAAAGGAA+TGG | + | chr7_4:52952832-52952851 | None:intergenic | 30.0% | |
| !! | TGATTTGATGATGATGTTGA+CGG | - | chr7_4:52953016-52953035 | Msa1162300:intron | 30.0% |
| CACAAATATAATGAGTGGTA+TGG | - | chr7_4:52953141-52953160 | Msa1162300:intron | 30.0% | |
| TTAACCCCACTTTCTAATTA+AGG | - | chr7_4:52953435-52953454 | Msa1162300:CDS | 30.0% | |
| AAGACCTTAATTAGAAAGTG+GGG | + | chr7_4:52953442-52953461 | None:intergenic | 30.0% | |
| GAAGACCTTAATTAGAAAGT+GGG | + | chr7_4:52953443-52953462 | None:intergenic | 30.0% | |
| TGAAGACCTTAATTAGAAAG+TGG | + | chr7_4:52953444-52953463 | None:intergenic | 30.0% | |
| ATCAATTGCAACAGAAAGAA+GGG | + | chr7_4:52953515-52953534 | None:intergenic | 30.0% | |
| AATCAATTGCAACAGAAAGA+AGG | + | chr7_4:52953516-52953535 | None:intergenic | 30.0% | |
| ATCACAATGAGAATCAAAAC+AGG | + | chr7_4:52953594-52953613 | None:intergenic | 30.0% | |
| TCTCATTGTGATGAATGATT+TGG | - | chr7_4:52953602-52953621 | Msa1162300:intron | 30.0% | |
| ! | AAAAGTGCATACACAATCTT+GGG | + | chr7_4:52953783-52953802 | None:intergenic | 30.0% |
| ! | TAAAAGTGCATACACAATCT+TGG | + | chr7_4:52953784-52953803 | None:intergenic | 30.0% |
| ! | AGATTGTGTATGCACTTTTA+TGG | - | chr7_4:52953784-52953803 | Msa1162300:intron | 30.0% |
| ATGATAGGATTTACTAACCT+TGG | + | chr7_4:52953860-52953879 | None:intergenic | 30.0% | |
| TTGTAACAGGAGAAAATGAT+AGG | + | chr7_4:52953875-52953894 | None:intergenic | 30.0% | |
| TGAAAGAAATTGAGAAGAGA+AGG | - | chr7_4:52953935-52953954 | Msa1162300:intron | 30.0% | |
| GAAAGAAATTGAGAAGAGAA+GGG | - | chr7_4:52953936-52953955 | Msa1162300:intron | 30.0% | |
| AAAGAAATTGAGAAGAGAAG+GGG | - | chr7_4:52953937-52953956 | Msa1162300:intron | 30.0% | |
| AGAGTTCAAAAAGAACAGAA+AGG | - | chr7_4:52953980-52953999 | Msa1162300:intron | 30.0% | |
| TAATGAATCCTTGGTTGTAT+CGG | + | chr7_4:52954239-52954258 | None:intergenic | 30.0% | |
| ! | TTGAGATGATAATGAATCCT+TGG | + | chr7_4:52954248-52954267 | None:intergenic | 30.0% |
| AAGGATTCATTATCATCTCA+AGG | - | chr7_4:52954247-52954266 | Msa1162300:intron | 30.0% | |
| ! | AATTCTTTAGAAAGCAATCG+TGG | - | chr7_4:52954340-52954359 | Msa1162300:intron | 30.0% |
| TGATGAAAAACCTGTTATAG+AGG | - | chr7_4:52954543-52954562 | Msa1162300:intron | 30.0% | |
| AAAACCTGTTATAGAGGTTA+AGG | - | chr7_4:52954549-52954568 | Msa1162300:intron | 30.0% | |
| ATTTCCTTAACCTCTATAAC+AGG | + | chr7_4:52954556-52954575 | None:intergenic | 30.0% | |
| GGTTAAGGAAATTGAAATCT+TGG | - | chr7_4:52954564-52954583 | Msa1162300:intron | 30.0% | |
| AAGGAAATTGAAATCTTGGA+TGG | - | chr7_4:52954568-52954587 | Msa1162300:intron | 30.0% | |
| ACGAATTGAAAATCTTGAAG+AGG | - | chr7_4:52954714-52954733 | Msa1162300:CDS | 30.0% | |
| ATATACATGCTTGTAAGCAT+TGG | - | chr7_4:52954845-52954864 | Msa1162300:intron | 30.0% | |
| !!! | ATTTTGGTTGCTAAATCATG+CGG | - | chr7_4:52954916-52954935 | Msa1162300:intron | 30.0% |
| AATTATCTCTCTCAGAACAA+TGG | + | chr7_4:52955076-52955095 | None:intergenic | 30.0% | |
| GAGATAATTTCACAAGCATT+TGG | - | chr7_4:52955087-52955106 | Msa1162300:CDS | 30.0% | |
| CATTTCCTGATTTACCATTT+GGG | + | chr7_4:52955212-52955231 | None:intergenic | 30.0% | |
| GAAGGGGAAGTTATTATTAA+TGG | - | chr7_4:52955393-52955412 | Msa1162300:CDS | 30.0% | |
| ! | CTATTTTACAACAATCCTGA+AGG | - | chr7_4:52955437-52955456 | Msa1162300:CDS | 30.0% |
| TCCTGTTCAAATAAATCTGT+TGG | - | chr7_4:52955559-52955578 | Msa1162300:CDS | 30.0% | |
| CCTGTTCAAATAAATCTGTT+GGG | - | chr7_4:52955560-52955579 | Msa1162300:CDS | 30.0% | |
| ACTAGAAACATAATCAAGCA+AGG | + | chr7_4:52955758-52955777 | None:intergenic | 30.0% | |
| TTAATCTACTCAATCCTTTG+AGG | + | chr7_4:52955802-52955821 | None:intergenic | 30.0% | |
| AAAACCTTTGAATCCACAAT+TGG | + | chr7_4:52955935-52955954 | None:intergenic | 30.0% | |
| !! | TATAATTGATTTGAGGCATG+TGG | - | chr7_4:52956228-52956247 | Msa1162300:intron | 30.0% |
| TAACTCTTCCATAAGCATAA+AGG | + | chr7_4:52956302-52956321 | None:intergenic | 30.0% | |
| ! | TATCCATAAGCATGTCTTTT+GGG | + | chr7_4:52956498-52956517 | None:intergenic | 30.0% |
| ! | CAGTCTTTCATTGATTATAC+GGG | - | chr7_4:52956639-52956658 | Msa1162300:intron | 30.0% |
| ! | ATTTTTCTTGTCTGTTACGA+AGG | - | chr7_4:52956750-52956769 | Msa1162300:intron | 30.0% |
| GCTTTCATCTATCATTGATA+AGG | - | chr7_4:52957219-52957238 | Msa1162300:intron | 30.0% | |
| !!! | TCAATTTCCCTTCCTTTTTT+GGG | - | chr7_4:52957509-52957528 | Msa1162300:five_prime_UTR | 30.0% |
| ATATACACCCAAAAAAGGAA+GGG | + | chr7_4:52957519-52957538 | None:intergenic | 30.0% | |
| TATATACACCCAAAAAAGGA+AGG | + | chr7_4:52957520-52957539 | None:intergenic | 30.0% | |
| ! | GTGTACAAACTTCTTTTACA+AGG | - | chr7_4:52957655-52957674 | Msa1162300:five_prime_UTR | 30.0% |
| !! | ATGATGGATTTAGGAATTCA+TGG | - | chr7_4:52957749-52957768 | Msa1162300:five_prime_UTR | 30.0% |
| !! | TAGTAGTGAGAGAGTGTTTA+GGG | + | chr7_4:52952113-52952132 | None:intergenic | 35.0% |
| !!! | TCGTTCTGTGTTTTTTGTAG+TGG | + | chr7_4:52952143-52952162 | None:intergenic | 35.0% |
| AGAAAAAGAGAGAAATCCTC+GGG | + | chr7_4:52952187-52952206 | None:intergenic | 35.0% | |
| GAGAAAAAGAGAGAAATCCT+CGG | + | chr7_4:52952188-52952207 | None:intergenic | 35.0% | |
| AACAGTTAAACACGTTACGT+TGG | + | chr7_4:52952288-52952307 | None:intergenic | 35.0% | |
| CAAGTACATACATACAGAGA+AGG | + | chr7_4:52952594-52952613 | None:intergenic | 35.0% | |
| GGAAAATGAAGTTACGTAGA+AGG | + | chr7_4:52952692-52952711 | None:intergenic | 35.0% | |
| AGTACGAAATGAAATGGAGA+TGG | + | chr7_4:52952713-52952732 | None:intergenic | 35.0% | |
| TTTCTTCATACTCTACTGCT+AGG | - | chr7_4:52953052-52953071 | Msa1162300:intron | 35.0% | |
| ! | AAAAATCTGTTGGTGGAGTA+GGG | + | chr7_4:52953095-52953114 | None:intergenic | 35.0% |
| ! | AAAAAATCTGTTGGTGGAGT+AGG | + | chr7_4:52953096-52953115 | None:intergenic | 35.0% |
| !! | CACACAATTCTGGTTCAATT+AGG | + | chr7_4:52953318-52953337 | None:intergenic | 35.0% |
| AGTCATTTGACACACAATTC+TGG | + | chr7_4:52953328-52953347 | None:intergenic | 35.0% | |
| ! | TACTGGCCTGAAATTTAATC+TGG | - | chr7_4:52953486-52953505 | Msa1162300:CDS | 35.0% |
| TTCTGCACTTGTCTTCTTTA+TGG | - | chr7_4:52953553-52953572 | Msa1162300:intron | 35.0% | |
| !! | CACTATATTTTTGCAGGTAG+TGG | - | chr7_4:52953722-52953741 | Msa1162300:intron | 35.0% |
| ! | TTGTGTATGCACTTTTATGG+TGG | - | chr7_4:52953787-52953806 | Msa1162300:intron | 35.0% |
| AACTTCTCAGAATTGTGCTT+CGG | + | chr7_4:52953819-52953838 | None:intergenic | 35.0% | |
| TCTGAGAAGTTACGTACTTT+AGG | - | chr7_4:52953828-52953847 | Msa1162300:intron | 35.0% | |
| CAAATGAAGAAGCTTGTAAC+AGG | + | chr7_4:52953888-52953907 | None:intergenic | 35.0% | |
| ATTATGTGGATGATGTCAAC+AGG | - | chr7_4:52954110-52954129 | Msa1162300:intron | 35.0% | |
| ! | TGATAATCACTCCACTGATT+TGG | - | chr7_4:52954174-52954193 | Msa1162300:intron | 35.0% |
| TTGGAGAAAGAGCAAAAAGA+AGG | - | chr7_4:52954193-52954212 | Msa1162300:intron | 35.0% | |
| TGGAGAAAGAGCAAAAAGAA+GGG | - | chr7_4:52954194-52954213 | Msa1162300:intron | 35.0% | |
| !! | TTCGCTCTAACCTTACTTTT+TGG | + | chr7_4:52954322-52954341 | None:intergenic | 35.0% |
| AAACTGCAATCAAAGGTAAC+AGG | - | chr7_4:52954394-52954413 | Msa1162300:intron | 35.0% | |
| !! | CTTTTGTTTGTAACTCTTGC+AGG | + | chr7_4:52954457-52954476 | None:intergenic | 35.0% |
| !! | AACTTTCACTGGCTTAGTAT+TGG | + | chr7_4:52954488-52954507 | None:intergenic | 35.0% |
| AGTTCCTGCAAAAGTTTCTT+CGG | - | chr7_4:52954504-52954523 | Msa1162300:intron | 35.0% | |
| ATCTTGGATGGATCTTCTAA+TGG | - | chr7_4:52954580-52954599 | Msa1162300:intron | 35.0% | |
| TATTCTATTGTACCAGAGCA+TGG | - | chr7_4:52954772-52954791 | Msa1162300:CDS | 35.0% | |
| CATGTATATAGAGCCTAGAA+AGG | + | chr7_4:52954834-52954853 | None:intergenic | 35.0% | |
| ATTGCCAAGAATACTGTTTC+TGG | - | chr7_4:52954889-52954908 | Msa1162300:intron | 35.0% | |
| !!! | TACTGTTTCTGGCCTTATTT+TGG | - | chr7_4:52954900-52954919 | Msa1162300:intron | 35.0% |
| ! | TGTGATTCAGGTTAACTTTC+TGG | - | chr7_4:52955040-52955059 | Msa1162300:CDS | 35.0% |
| !! | AAATGGAAAGGTATCCCAAA+TGG | - | chr7_4:52955195-52955214 | Msa1162300:CDS | 35.0% |
| CCATTTCCTGATTTACCATT+TGG | + | chr7_4:52955213-52955232 | None:intergenic | 35.0% | |
| CCAAATGGTAAATCAGGAAA+TGG | - | chr7_4:52955210-52955229 | Msa1162300:CDS | 35.0% | |
| !! | TCTTTCTAAGGCAAACGTAA+AGG | + | chr7_4:52955274-52955293 | None:intergenic | 35.0% |
| ! | TCGAATCATGGATCTTTTCT+CGG | - | chr7_4:52955295-52955314 | Msa1162300:CDS | 35.0% |
| GATTTAAACTCTACCCTTAG+AGG | - | chr7_4:52955460-52955479 | Msa1162300:CDS | 35.0% | |
| ! | GAGAAGTTTTCTGTGCTTTT+AGG | - | chr7_4:52955501-52955520 | Msa1162300:CDS | 35.0% |
| GACTCCTTATATGCAATCTT+CGG | - | chr7_4:52955528-52955547 | Msa1162300:CDS | 35.0% | |
| CTTATATGCAATCTTCGGTT+GGG | - | chr7_4:52955533-52955552 | Msa1162300:CDS | 35.0% | |
| TTATATGCAATCTTCGGTTG+GGG | - | chr7_4:52955534-52955553 | Msa1162300:CDS | 35.0% | |
| CCCAACAGATTTATTTGAAC+AGG | + | chr7_4:52955563-52955582 | None:intergenic | 35.0% | |
| GTTCAAATAAATCTGTTGGG+AGG | - | chr7_4:52955563-52955582 | Msa1162300:CDS | 35.0% | |
| ! | GAAACTTTTCCATCAATCTC+TGG | - | chr7_4:52955620-52955639 | Msa1162300:CDS | 35.0% |
| !! | AGAGTCTTTGAAAAGCATCT+TGG | + | chr7_4:52955657-52955676 | None:intergenic | 35.0% |
| GAGGCTTAGAACAAAAGAAT+GGG | + | chr7_4:52955783-52955802 | None:intergenic | 35.0% | |
| TGAGGCTTAGAACAAAAGAA+TGG | + | chr7_4:52955784-52955803 | None:intergenic | 35.0% | |
| !! | TCTTTTGTTCTAAGCCTCAA+AGG | - | chr7_4:52955785-52955804 | Msa1162300:intron | 35.0% |
| AAAATTCATTCACCAGGTCA+TGG | - | chr7_4:52955820-52955839 | Msa1162300:intron | 35.0% | |
| CGATGTTCAATGCAATTCTT+CGG | - | chr7_4:52955870-52955889 | Msa1162300:intron | 35.0% | |
| GATGTTCAATGCAATTCTTC+GGG | - | chr7_4:52955871-52955890 | Msa1162300:intron | 35.0% | |
| GATCTGATATTGGATCAGTT+GGG | + | chr7_4:52955913-52955932 | None:intergenic | 35.0% | |
| TCCAATATCAGATCCAATTG+TGG | - | chr7_4:52955919-52955938 | Msa1162300:intron | 35.0% | |
| TCCACAATTGGATCTGATAT+TGG | + | chr7_4:52955923-52955942 | None:intergenic | 35.0% | |
| AGATCCAATTGTGGATTCAA+AGG | - | chr7_4:52955928-52955947 | Msa1162300:intron | 35.0% | |
| TGGTGCACAGCTAAAAAATT+CGG | - | chr7_4:52955988-52956007 | Msa1162300:intron | 35.0% | |
| ! | TCTTTGCTATCACATCTTAG+AGG | - | chr7_4:52956113-52956132 | Msa1162300:five_prime_UTR | 35.0% |
| ! | CTTTGCTATCACATCTTAGA+GGG | - | chr7_4:52956114-52956133 | Msa1162300:five_prime_UTR | 35.0% |
| AGATTGCTCACTGATATGTT+TGG | - | chr7_4:52956349-52956368 | Msa1162300:intron | 35.0% | |
| CATTGATGCTGAAGATTGTT+CGG | - | chr7_4:52956372-52956391 | Msa1162300:intron | 35.0% | |
| ! | CTATCCATAAGCATGTCTTT+TGG | + | chr7_4:52956499-52956518 | None:intergenic | 35.0% |
| ATCAATGAAAGACTGATGGA+TGG | + | chr7_4:52956634-52956653 | None:intergenic | 35.0% | |
| TAATATTGGCGTAGAACTCA+TGG | - | chr7_4:52956809-52956828 | Msa1162300:intron | 35.0% | |
| ! | TGTATAGTCCGATTTTGCAT+TGG | - | chr7_4:52956838-52956857 | Msa1162300:intron | 35.0% |
| TTCCTTTGCCAATGCAAAAT+CGG | + | chr7_4:52956849-52956868 | None:intergenic | 35.0% | |
| AATGGTAATCACAAAGAGCA+AGG | - | chr7_4:52957274-52957293 | Msa1162300:intron | 35.0% | |
| ATGGTAATCACAAAGAGCAA+GGG | - | chr7_4:52957275-52957294 | Msa1162300:intron | 35.0% | |
| ! | TAGTTGATATCTGGCATTTG+TGG | + | chr7_4:52957311-52957330 | None:intergenic | 35.0% |
| ! | TTCACGAAGTAGTTGATATC+TGG | + | chr7_4:52957320-52957339 | None:intergenic | 35.0% |
| ATCAACTACTTCGTGAAGTT+TGG | - | chr7_4:52957323-52957342 | Msa1162300:intron | 35.0% | |
| TTCACAAGTTTCACATCACA+TGG | + | chr7_4:52957350-52957369 | None:intergenic | 35.0% | |
| !!! | CTCAATTTCCCTTCCTTTTT+TGG | - | chr7_4:52957508-52957527 | Msa1162300:five_prime_UTR | 35.0% |
| TAAGCATCAGAATACGACAT+TGG | - | chr7_4:52957680-52957699 | Msa1162300:five_prime_UTR | 35.0% | |
| !! | AGTAGTGAGAGAGTGTTTAG+GGG | + | chr7_4:52952112-52952131 | None:intergenic | 40.0% |
| !! | GTAGTAGTGAGAGAGTGTTT+AGG | + | chr7_4:52952114-52952133 | None:intergenic | 40.0% |
| ACAACACATTACTAATCCCG+AGG | - | chr7_4:52952168-52952187 | Msa1162300:three_prime_UTR | 40.0% | |
| GAACTAACCACAAGAAACAC+GGG | + | chr7_4:52952266-52952285 | None:intergenic | 40.0% | |
| GGAACTAACCACAAGAAACA+CGG | + | chr7_4:52952267-52952286 | None:intergenic | 40.0% | |
| GAAACGAAACGAAACGAAAC+AGG | + | chr7_4:52952454-52952473 | None:intergenic | 40.0% | |
| ! | TATGCTTACTACTTGCTAGC+TGG | + | chr7_4:52952990-52953009 | None:intergenic | 40.0% |
| ! | AAAATCTGTTGGTGGAGTAG+GGG | + | chr7_4:52953094-52953113 | None:intergenic | 40.0% |
| !! | AATGAGTGGTATGGCTTTGA+CGG | - | chr7_4:52953150-52953169 | Msa1162300:intron | 40.0% |
| TGGCCTGAAATTTAATCTGG+TGG | - | chr7_4:52953489-52953508 | Msa1162300:CDS | 40.0% | |
| !!! | ACATTGCTGTTTTGAGTCTC+TGG | - | chr7_4:52953746-52953765 | Msa1162300:intron | 40.0% |
| TTGCTCTTTCTCCAAATCAG+TGG | + | chr7_4:52954188-52954207 | None:intergenic | 40.0% | |
| TAGAAAGCAATCGTGGATCA+AGG | - | chr7_4:52954347-52954366 | Msa1162300:intron | 40.0% | |
| AGAAAGCAATCGTGGATCAA+GGG | - | chr7_4:52954348-52954367 | Msa1162300:intron | 40.0% | |
| ! | ACTTTTGCAGGAACTTTCAC+TGG | + | chr7_4:52954499-52954518 | None:intergenic | 40.0% |
| ! | GATTCCGAAGAAACTTTTGC+AGG | + | chr7_4:52954511-52954530 | None:intergenic | 40.0% |
| GTTTCTTCGGAATCTTCTGA+AGG | - | chr7_4:52954517-52954536 | Msa1162300:intron | 40.0% | |
| AATGCTGAAGAAAACGGTGA+AGG | - | chr7_4:52954646-52954665 | Msa1162300:intron | 40.0% | |
| !! | AATCGTTGCTTTCCTTTTCG+GGG | + | chr7_4:52954872-52954891 | None:intergenic | 40.0% |
| !! | CAATCGTTGCTTTCCTTTTC+GGG | + | chr7_4:52954873-52954892 | None:intergenic | 40.0% |
| !! | GCAATCGTTGCTTTCCTTTT+CGG | + | chr7_4:52954874-52954893 | None:intergenic | 40.0% |
| AAGGCCAGAAACAGTATTCT+TGG | + | chr7_4:52954896-52954915 | None:intergenic | 40.0% | |
| CATGCGGTAATGATGTTTCA+AGG | - | chr7_4:52954932-52954951 | Msa1162300:intron | 40.0% | |
| CTGAATCACAAGTCAAGATG+CGG | + | chr7_4:52955030-52955049 | None:intergenic | 40.0% | |
| TCACAAGCATTTGGGAATTC+CGG | - | chr7_4:52955096-52955115 | Msa1162300:CDS | 40.0% | |
| TCTGCATCACTGAAATGGAA+AGG | - | chr7_4:52955183-52955202 | Msa1162300:CDS | 40.0% | |
| GGTATCCCAAATGGTAAATC+AGG | - | chr7_4:52955204-52955223 | Msa1162300:CDS | 40.0% | |
| !!! | GGAAATGGTTTTATGCAGAC+CGG | - | chr7_4:52955225-52955244 | Msa1162300:CDS | 40.0% |
| TAAGGCAAACGTAAAGGTTC+CGG | + | chr7_4:52955268-52955287 | None:intergenic | 40.0% | |
| CCATGATTCGACTCTTTCTA+AGG | + | chr7_4:52955286-52955305 | None:intergenic | 40.0% | |
| CCTTAGAAAGAGTCGAATCA+TGG | - | chr7_4:52955283-52955302 | Msa1162300:CDS | 40.0% | |
| GGTAGAGTTTAAATCCCTTC+AGG | + | chr7_4:52955455-52955474 | None:intergenic | 40.0% | |
| ATCGCATATGCAACCTCTAA+GGG | + | chr7_4:52955476-52955495 | None:intergenic | 40.0% | |
| TATCGCATATGCAACCTCTA+AGG | + | chr7_4:52955477-52955496 | None:intergenic | 40.0% | |
| CCAACCGAAGATTGCATATA+AGG | + | chr7_4:52955535-52955554 | None:intergenic | 40.0% | |
| CCTTATATGCAATCTTCGGT+TGG | - | chr7_4:52955532-52955551 | Msa1162300:CDS | 40.0% | |
| GGATCTGATATTGGATCAGT+TGG | + | chr7_4:52955914-52955933 | None:intergenic | 40.0% | |
| TCCAAAGCTTAAGTTTCCTG+CGG | + | chr7_4:52955966-52955985 | None:intergenic | 40.0% | |
| !! | GGAAACTTAAGCTTTGGATC+TGG | - | chr7_4:52955968-52955987 | Msa1162300:intron | 40.0% |
| ! | CCATAAGCATAAAGGTGTGT+AGG | + | chr7_4:52956294-52956313 | None:intergenic | 40.0% |
| CCTACACACCTTTATGCTTA+TGG | - | chr7_4:52956291-52956310 | Msa1162300:intron | 40.0% | |
| !!! | TGTCTTTTGGGAGCATTAGA+AGG | + | chr7_4:52956486-52956505 | None:intergenic | 40.0% |
| GCTATAAGGGAAGCTTCTAA+TGG | + | chr7_4:52957047-52957066 | None:intergenic | 40.0% | |
| TCACCTGACAAGGAATGTAT+CGG | - | chr7_4:52957141-52957160 | Msa1162300:intron | 40.0% | |
| TACAAGCGATGAAGAACTTG+AGG | - | chr7_4:52957183-52957202 | Msa1162300:intron | 40.0% | |
| TTTCCATTTGTAGCGACTGT+TGG | + | chr7_4:52957256-52957275 | None:intergenic | 40.0% | |
| ACAGTCGCTACAAATGGAAA+TGG | - | chr7_4:52957256-52957275 | Msa1162300:intron | 40.0% | |
| TTGATATCTGGCATTTGTGG+TGG | + | chr7_4:52957308-52957327 | None:intergenic | 40.0% | |
| GATTTAGGAATTCATGGCCT+TGG | - | chr7_4:52957755-52957774 | Msa1162300:five_prime_UTR | 40.0% | |
| !! | GTAGTGAGAGAGTGTTTAGG+GGG | + | chr7_4:52952111-52952130 | None:intergenic | 45.0% |
| AACCACAAGAAACACGGGTA+GGG | + | chr7_4:52952261-52952280 | None:intergenic | 45.0% | |
| TAACCACAAGAAACACGGGT+AGG | + | chr7_4:52952262-52952281 | None:intergenic | 45.0% | |
| GACAAGACAGAACAGAGAAG+AGG | + | chr7_4:52952432-52952451 | None:intergenic | 45.0% | |
| GTTTACGAGACAGACACATG+TGG | - | chr7_4:52953181-52953200 | Msa1162300:CDS | 45.0% | |
| GGGCCACCAGATTAAATTTC+AGG | + | chr7_4:52953495-52953514 | None:intergenic | 45.0% | |
| ATACGACACCGATACAACCA+AGG | - | chr7_4:52954228-52954247 | Msa1162300:intron | 45.0% | |
| TCTAATGGCGCTCAAAGTGT+AGG | - | chr7_4:52954595-52954614 | Msa1162300:intron | 45.0% | |
| TGAAGAAAACGGTGAAGGTG+AGG | - | chr7_4:52954651-52954670 | Msa1162300:intron | 45.0% | |
| !! | CGCATCTTGACTTGTGATTC+AGG | - | chr7_4:52955028-52955047 | Msa1162300:CDS | 45.0% |
| !! | CATAATGGGACTGACTTGAC+CGG | + | chr7_4:52955118-52955137 | None:intergenic | 45.0% |
| GTCAAGTCAGTCCCATTATG+AGG | - | chr7_4:52955118-52955137 | Msa1162300:CDS | 45.0% | |
| AGTCAGTCCCATTATGAGGT+TGG | - | chr7_4:52955122-52955141 | Msa1162300:CDS | 45.0% | |
| AGACTTCCCATCATTCCTCT+TGG | + | chr7_4:52955166-52955185 | None:intergenic | 45.0% | |
| GGAAGTCTGCATCACTGAAA+TGG | - | chr7_4:52955178-52955197 | Msa1162300:CDS | 45.0% | |
| TTATGCAGACCGGTGAAGAT+TGG | - | chr7_4:52955235-52955254 | Msa1162300:CDS | 45.0% | |
| ! | CTTTTCTCGGCTAGTAGAGT+CGG | - | chr7_4:52955308-52955327 | Msa1162300:CDS | 45.0% |
| AGCGTTTCTCCAGAGATTGA+TGG | + | chr7_4:52955632-52955651 | None:intergenic | 45.0% | |
| AATTCTTCGGGAATCAGCCT+TGG | - | chr7_4:52955883-52955902 | Msa1162300:intron | 45.0% | |
| CTTAAGTTTCCTGCGGGAAT+CGG | + | chr7_4:52955959-52955978 | None:intergenic | 45.0% | |
| CCAAAGCTTAAGTTTCCTGC+GGG | + | chr7_4:52955965-52955984 | None:intergenic | 45.0% | |
| ATGTGGCTCTTGCAGTATCA+AGG | - | chr7_4:52956245-52956264 | Msa1162300:intron | 45.0% | |
| GGAAGAGTTACTTGAACTGC+AGG | - | chr7_4:52956312-52956331 | Msa1162300:intron | 45.0% | |
| GAGTTACTTGAACTGCAGGT+TGG | - | chr7_4:52956316-52956335 | Msa1162300:intron | 45.0% | |
| ! | TTGAACTGCAGGTTGGCAAT+TGG | - | chr7_4:52956323-52956342 | Msa1162300:intron | 45.0% |
| AGAACAGTGAGAACGACGAA+AGG | - | chr7_4:52956407-52956426 | Msa1162300:intron | 45.0% | |
| GAAGGTCACTCAAGTCGTTA+AGG | + | chr7_4:52956468-52956487 | None:intergenic | 45.0% | |
| GCTCCCAAAAGACATGCTTA+TGG | - | chr7_4:52956492-52956511 | Msa1162300:intron | 45.0% | |
| TATGGATAGACAAGTCAGCC+AGG | - | chr7_4:52956510-52956529 | Msa1162300:intron | 45.0% | |
| GGTTCTCTGTAACTTCACTC+CGG | - | chr7_4:52956660-52956679 | Msa1162300:intron | 45.0% | |
| !! | GTCCGATTTTGCATTGGCAA+AGG | - | chr7_4:52956844-52956863 | Msa1162300:intron | 45.0% |
| TGTGGAACGTAGAATGTCAG+CGG | - | chr7_4:52957018-52957037 | Msa1162300:intron | 45.0% | |
| TAGAAGCTTCCCTTATAGCG+CGG | - | chr7_4:52957048-52957067 | Msa1162300:intron | 45.0% | |
| TCTCCAACAGTCGCTACAAA+TGG | - | chr7_4:52957250-52957269 | Msa1162300:intron | 45.0% | |
| GCATCAGAATACGACATTGG+AGG | - | chr7_4:52957683-52957702 | Msa1162300:five_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr7_4:52952901-52952920 | Msa1162300:intron | 5.0% |
| !!! | ATTTAAAATTAATAAAATTG+GGG | - | chr7_4:52955371-52955390 | Msa1162300:CDS | 5.0% |
| TACCCTACCCGTGTTTCTTG+TGG | - | chr7_4:52952256-52952275 | Msa1162300:three_prime_UTR | 50.0% | |
| ! | CGTACTTTAGGAGCTTGCCA+AGG | - | chr7_4:52953840-52953859 | Msa1162300:intron | 50.0% |
| CATCTTGACAAGTGCCTCCT+CGG | + | chr7_4:52954137-52954156 | None:intergenic | 50.0% | |
| GAAAACGGTGAAGGTGAGGA+TGG | - | chr7_4:52954655-52954674 | Msa1162300:intron | 50.0% | |
| !! | GTAAGCATTGGACCCCGAAA+AGG | - | chr7_4:52954857-52954876 | Msa1162300:intron | 50.0% |
| AGTCCCATTATGAGGTTGGC+TGG | - | chr7_4:52955126-52955145 | Msa1162300:CDS | 50.0% | |
| ! | GTCCCATTATGAGGTTGGCT+GGG | - | chr7_4:52955127-52955146 | Msa1162300:CDS | 50.0% |
| GACCCAGCCAACCTCATAAT+GGG | + | chr7_4:52955132-52955151 | None:intergenic | 50.0% | |
| TGACCCAGCCAACCTCATAA+TGG | + | chr7_4:52955133-52955152 | None:intergenic | 50.0% | |
| ! | ATGAGGTTGGCTGGGTCAAA+TGG | - | chr7_4:52955135-52955154 | Msa1162300:CDS | 50.0% |
| ! | TGAGGTTGGCTGGGTCAAAT+GGG | - | chr7_4:52955136-52955155 | Msa1162300:CDS | 50.0% |
| GGTCTGCCAAGAGGAATGAT+GGG | - | chr7_4:52955157-52955176 | Msa1162300:CDS | 50.0% | |
| GGTCTCTTGCCAATCTTCAC+CGG | + | chr7_4:52955247-52955266 | None:intergenic | 50.0% | |
| GGTGAAGATTGGCAAGAGAC+CGG | - | chr7_4:52955246-52955265 | Msa1162300:CDS | 50.0% | |
| AAATCTGTTGGGAGGCTGCT+AGG | - | chr7_4:52955571-52955590 | Msa1162300:CDS | 50.0% | |
| TGATTGTGATCACCTCGAGC+AGG | + | chr7_4:52955598-52955617 | None:intergenic | 50.0% | |
| GCTCGAGGTGATCACAATCA+AGG | - | chr7_4:52955598-52955617 | Msa1162300:CDS | 50.0% | |
| CATACCATTCTTGCCATCGC+AGG | + | chr7_4:52955718-52955737 | None:intergenic | 50.0% | |
| CTATGCACTGTTCCATGACC+TGG | + | chr7_4:52955835-52955854 | None:intergenic | 50.0% | |
| TGGATCAGTTGGGATCTCCA+AGG | + | chr7_4:52955903-52955922 | None:intergenic | 50.0% | |
| CCCGCAGGAAACTTAAGCTT+TGG | - | chr7_4:52955962-52955981 | Msa1162300:intron | 50.0% | |
| TCGTCGTTCTCACTGTTCTC+TGG | + | chr7_4:52956406-52956425 | None:intergenic | 50.0% | |
| CAAGCATACCTCTCCGTTCA+AGG | + | chr7_4:52956728-52956747 | None:intergenic | 50.0% | |
| ! | GAGGGAGGCATATACACAAC+TGG | + | chr7_4:52957076-52957095 | None:intergenic | 50.0% |
| TGTGGCAGAGAAAGTTGCAG+AGG | - | chr7_4:52957105-52957124 | Msa1162300:intron | 50.0% | |
| !! | GAGGAAAGTGTCACCTGACA+AGG | - | chr7_4:52957131-52957150 | Msa1162300:intron | 50.0% |
| CAGCCGATACATTCCTTGTC+AGG | + | chr7_4:52957147-52957166 | None:intergenic | 50.0% | |
| !! | GGAATGTATCGGCTGTTCAG+CGG | - | chr7_4:52957152-52957171 | Msa1162300:intron | 50.0% |
| GTAGCGACTGTTGGAGATGA+AGG | + | chr7_4:52957247-52957266 | None:intergenic | 50.0% | |
| CGTGTGTCTGTGTGTGTGGT+AGG | + | chr7_4:52952502-52952521 | None:intergenic | 55.0% | |
| TGAGCGTGTGTCTGTGTGTG+TGG | + | chr7_4:52952506-52952525 | None:intergenic | 55.0% | |
| GGATGATGTCAACAGGTCCG+AGG | - | chr7_4:52954117-52954136 | Msa1162300:intron | 55.0% | |
| TGATGTCAACAGGTCCGAGG+AGG | - | chr7_4:52954120-52954139 | Msa1162300:intron | 55.0% | |
| GAGAGAAGTTGCTGCTCTCG+AGG | - | chr7_4:52954741-52954760 | Msa1162300:CDS | 55.0% | |
| TGTGCTGAGCTACCATGCTC+TGG | + | chr7_4:52954787-52954806 | None:intergenic | 55.0% | |
| GCATGGTAGCTCAGCACACA+AGG | - | chr7_4:52954789-52954808 | Msa1162300:CDS | 55.0% | |
| ACAAGGTTCACACACCTGCG+CGG | - | chr7_4:52954806-52954825 | Msa1162300:CDS | 55.0% | |
| GGTCAAATGGGTCTGCCAAG+AGG | - | chr7_4:52955148-52955167 | Msa1162300:CDS | 55.0% | |
| GGGTCTGCCAAGAGGAATGA+TGG | - | chr7_4:52955156-52955175 | Msa1162300:CDS | 55.0% | |
| AGACTCTGTCCTCTTCGAGC+AGG | - | chr7_4:52955670-52955689 | Msa1162300:CDS | 55.0% | |
| TCTGTCCTCTTCGAGCAGGA+GGG | - | chr7_4:52955674-52955693 | Msa1162300:CDS | 55.0% | |
| CTTGCCTGCGATGGCAAGAA+TGG | - | chr7_4:52955711-52955730 | Msa1162300:CDS | 55.0% | |
| !!! | AAGGTTTTGCCGATTCCCGC+AGG | - | chr7_4:52955947-52955966 | Msa1162300:intron | 55.0% |
| AGTGAGAACGACGAAAGGCG+AGG | - | chr7_4:52956412-52956431 | Msa1162300:intron | 55.0% | |
| GGATAGACAAGTCAGCCAGG+AGG | - | chr7_4:52956513-52956532 | Msa1162300:intron | 55.0% | |
| GCGTCAGGACAGAACTCATC+CGG | + | chr7_4:52956682-52956701 | None:intergenic | 55.0% | |
| GGATGAGTTCTGTCCTGACG+CGG | - | chr7_4:52956681-52956700 | Msa1162300:intron | 55.0% | |
| GCTGTCTTGGAGGCCTTGAA+CGG | - | chr7_4:52956712-52956731 | Msa1162300:intron | 55.0% | |
| CAACTGGAGCCGCGCTATAA+GGG | + | chr7_4:52957060-52957079 | None:intergenic | 55.0% | |
| ACAACTGGAGCCGCGCTATA+AGG | + | chr7_4:52957061-52957080 | None:intergenic | 55.0% | |
| GCAGAGAAAGTTGCAGAGGC+AGG | - | chr7_4:52957109-52957128 | Msa1162300:intron | 55.0% | |
| GAGAAAGTTGCAGAGGCAGG+AGG | - | chr7_4:52957112-52957131 | Msa1162300:intron | 55.0% | |
| CGGTGAAGGTGAGGATGGTG+CGG | - | chr7_4:52954660-52954679 | Msa1162300:intron | 60.0% | |
| AGGTGAGGATGGTGCGGCTA+TGG | - | chr7_4:52954666-52954685 | Msa1162300:intron | 60.0% | |
| CTCGGCTAGTAGAGTCGGTG+TGG | - | chr7_4:52955313-52955332 | Msa1162300:CDS | 60.0% | |
| GGCTAGTAGAGTCGGTGTGG+TGG | - | chr7_4:52955316-52955335 | Msa1162300:CDS | 60.0% | |
| AGTAGAGTCGGTGTGGTGGC+AGG | - | chr7_4:52955320-52955339 | Msa1162300:CDS | 60.0% | |
| CTCTGTCCTCTTCGAGCAGG+AGG | - | chr7_4:52955673-52955692 | Msa1162300:CDS | 60.0% | |
| GTGTGGTTGCTTGCCTGCGA+TGG | - | chr7_4:52955702-52955721 | Msa1162300:CDS | 60.0% | |
| GAGAACGACGAAAGGCGAGG+TGG | - | chr7_4:52956415-52956434 | Msa1162300:intron | 60.0% | |
| TTCTGTCCTGACGCGGTTCC+AGG | - | chr7_4:52956688-52956707 | Msa1162300:intron | 60.0% | |
| GGTTCCAGGAGCTGTCTTGG+AGG | - | chr7_4:52956702-52956721 | Msa1162300:intron | 60.0% | |
| AAGGCCTCCAAGACAGCTCC+TGG | + | chr7_4:52956709-52956728 | None:intergenic | 60.0% | |
| CTTGGAGGCCTTGAACGGAG+AGG | - | chr7_4:52956717-52956736 | Msa1162300:intron | 60.0% | |
| !! | GTATCGGCTGTTCAGCGGAG+AGG | - | chr7_4:52957157-52957176 | Msa1162300:intron | 60.0% |
| AGGCTGCTAGGACCTGCTCG+AGG | - | chr7_4:52955583-52955602 | Msa1162300:CDS | 65.0% | |
| TCGTGCCCTCCTGCTCGAAG+AGG | + | chr7_4:52955682-52955701 | None:intergenic | 65.0% | |
| ACAGCTCCTGGAACCGCGTC+AGG | + | chr7_4:52956697-52956716 | None:intergenic | 65.0% | |
| CGCGGTTCCAGGAGCTGTCT+TGG | - | chr7_4:52956699-52956718 | Msa1162300:intron | 65.0% | |
| CACCTGCGCGGCGCCTTTCT+AGG | - | chr7_4:52954818-52954837 | Msa1162300:CDS | 70.0% | |
| !! | AGCCTAGAAAGGCGCCGCGC+AGG | + | chr7_4:52954823-52954842 | None:intergenic | 70.0% |
| ! | CGAGCAGGAGGGCACGAGTG+TGG | - | chr7_4:52955685-52955704 | Msa1162300:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 52952102 | 52957811 | 52952102 | ID=Msa1162300;Name=Msa1162300 |
| chr7_4 | mRNA | 52952102 | 52957811 | 52952102 | ID=Msa1162300-mRNA-1;Parent=Msa1162300;Name=Msa1162300-mRNA-1;_AED=0.23;_eAED=0.23;_QI=531|0.83|0.71|1|0.66|0.57|7|457|523 |
| chr7_4 | exon | 52952102 | 52952900 | 52952102 | ID=Msa1162300-mRNA-1:exon:15267;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52953175 | 52953288 | 52953175 | ID=Msa1162300-mRNA-1:exon:15266;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52953379 | 52953527 | 52953379 | ID=Msa1162300-mRNA-1:exon:15265;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52954697 | 52954863 | 52954697 | ID=Msa1162300-mRNA-1:exon:15264;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52954960 | 52955781 | 52954960 | ID=Msa1162300-mRNA-1:exon:15263;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52956052 | 52956175 | 52956052 | ID=Msa1162300-mRNA-1:exon:15262;Parent=Msa1162300-mRNA-1 |
| chr7_4 | exon | 52957427 | 52957811 | 52957427 | ID=Msa1162300-mRNA-1:exon:15261;Parent=Msa1162300-mRNA-1 |
| chr7_4 | five_prime_UTR | 52957427 | 52957811 | 52957427 | ID=Msa1162300-mRNA-1:five_prime_utr;Parent=Msa1162300-mRNA-1 |
| chr7_4 | five_prime_UTR | 52956052 | 52956175 | 52956052 | ID=Msa1162300-mRNA-1:five_prime_utr;Parent=Msa1162300-mRNA-1 |
| chr7_4 | five_prime_UTR | 52955760 | 52955781 | 52955760 | ID=Msa1162300-mRNA-1:five_prime_utr;Parent=Msa1162300-mRNA-1 |
| chr7_4 | CDS | 52954960 | 52955759 | 52954960 | ID=Msa1162300-mRNA-1:cds;Parent=Msa1162300-mRNA-1 |
| chr7_4 | CDS | 52954697 | 52954863 | 52954697 | ID=Msa1162300-mRNA-1:cds;Parent=Msa1162300-mRNA-1 |
| chr7_4 | CDS | 52953379 | 52953527 | 52953379 | ID=Msa1162300-mRNA-1:cds;Parent=Msa1162300-mRNA-1 |
| chr7_4 | CDS | 52953175 | 52953288 | 52953175 | ID=Msa1162300-mRNA-1:cds;Parent=Msa1162300-mRNA-1 |
| chr7_4 | CDS | 52952559 | 52952900 | 52952559 | ID=Msa1162300-mRNA-1:cds;Parent=Msa1162300-mRNA-1 |
| chr7_4 | three_prime_UTR | 52952102 | 52952558 | 52952102 | ID=Msa1162300-mRNA-1:three_prime_utr;Parent=Msa1162300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
