Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433060 | XP_003603496.1 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433060 | sp|P50346|RLA0_SOYBN | 90.938 | 320 | 28 | 1 | 1 | 320 | 1 | 319 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433060 | G7JC94 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa0433060 | 0.808136 | 3.592621e-50 | -8.615850e-47 |
| Msa0028150 | Msa0433060 | 0.818464 | 1.933325e-52 | -8.615850e-47 |
| Msa0071760 | Msa0433060 | 0.900303 | 8.387243e-78 | -8.615850e-47 |
| Msa0075730 | Msa0433060 | 0.819539 | 1.101565e-52 | -8.615850e-47 |
| Msa0086160 | Msa0433060 | 0.897822 | 9.686962e-77 | -8.615850e-47 |
| Msa0089540 | Msa0433060 | 0.864460 | 1.197046e-64 | -8.615850e-47 |
| Msa0114600 | Msa0433060 | 0.884862 | 1.334433e-71 | -8.615850e-47 |
| Msa0123290 | Msa0433060 | 0.807618 | 4.629104e-50 | -8.615850e-47 |
| Msa0123790 | Msa0433060 | 0.806953 | 6.403602e-50 | -8.615850e-47 |
| Msa0132460 | Msa0433060 | 0.858203 | 9.680101e-63 | -8.615850e-47 |
| Msa0144800 | Msa0433060 | 0.801512 | 8.694542e-49 | -8.615850e-47 |
| Msa0149980 | Msa0433060 | 0.806230 | 9.099321e-50 | -8.615850e-47 |
| Msa0167860 | Msa0433060 | 0.801478 | 8.835209e-49 | -8.615850e-47 |
| Msa0182050 | Msa0433060 | 0.853649 | 2.078882e-61 | -8.615850e-47 |
| Msa0182100 | Msa0433060 | 0.883066 | 6.144872e-71 | -8.615850e-47 |
| Msa0188740 | Msa0433060 | 0.836475 | 9.158909e-57 | -8.615850e-47 |
| Msa0192300 | Msa0433060 | 0.815801 | 7.675642e-52 | -8.615850e-47 |
| Msa0192490 | Msa0433060 | 0.809943 | 1.473776e-50 | -8.615850e-47 |
| Msa0223240 | Msa0433060 | 0.816610 | 5.059375e-52 | -8.615850e-47 |
| Msa0370350 | Msa0433060 | -0.807670 | 4.513680e-50 | -8.615850e-47 |
| Msa0371490 | Msa0433060 | 0.818500 | 1.898067e-52 | -8.615850e-47 |
| Msa0377370 | Msa0433060 | 0.873115 | 1.888146e-67 | -8.615850e-47 |
| Msa0383690 | Msa0433060 | 0.812341 | 4.452497e-51 | -8.615850e-47 |
| Msa0417850 | Msa0433060 | -0.822789 | 1.962500e-53 | -8.615850e-47 |
| Msa0419710 | Msa0433060 | 0.812342 | 4.448842e-51 | -8.615850e-47 |
| Msa0426940 | Msa0433060 | 0.816604 | 5.075840e-52 | -8.615850e-47 |
| Msa0433060 | Msa0450150 | 0.856977 | 2.232608e-62 | -8.615850e-47 |
| Msa0433060 | Msa0469740 | 0.807126 | 5.887225e-50 | -8.615850e-47 |
| Msa0433060 | Msa0521730 | 0.887436 | 1.429374e-72 | -8.615850e-47 |
| Msa0433060 | Msa0524680 | 0.999427 | 8.832583e-311 | -8.615850e-47 |
| Msa0433060 | Msa0547920 | 0.846856 | 1.669459e-59 | -8.615850e-47 |
| Msa0433060 | Msa0550490 | 0.876916 | 9.543121e-69 | -8.615850e-47 |
| Msa0433060 | Msa0568380 | 0.824506 | 7.779513e-54 | -8.615850e-47 |
| Msa0433060 | Msa0573550 | 0.824893 | 6.307168e-54 | -8.615850e-47 |
| Msa0433060 | Msa0581440 | -0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa0433060 | Msa0585570 | 0.878500 | 2.670464e-69 | -8.615850e-47 |
| Msa0433060 | Msa0587830 | 0.824554 | 7.580295e-54 | -8.615850e-47 |
| Msa0433060 | Msa0602900 | 0.855096 | 7.934982e-62 | -8.615850e-47 |
| Msa0433060 | Msa0609120 | 0.812157 | 4.882620e-51 | -8.615850e-47 |
| Msa0433060 | Msa0643960 | 0.858907 | 5.967955e-63 | -8.615850e-47 |
| Msa0433060 | Msa0655710 | 0.803873 | 2.832346e-49 | -8.615850e-47 |
| Msa0433060 | Msa0663400 | 0.876612 | 1.215566e-68 | -8.615850e-47 |
| Msa0433060 | Msa0708630 | 0.859234 | 4.761431e-63 | -8.615850e-47 |
| Msa0433060 | Msa0715970 | 0.819337 | 1.224495e-52 | -8.615850e-47 |
| Msa0433060 | Msa0741510 | 0.806851 | 6.729695e-50 | -8.615850e-47 |
| Msa0433060 | Msa0790450 | 0.839737 | 1.325141e-57 | -8.615850e-47 |
| Msa0433060 | Msa0798590 | 0.859062 | 5.363561e-63 | -8.615850e-47 |
| Msa0433060 | Msa0812240 | 0.837769 | 4.273663e-57 | -8.615850e-47 |
| Msa0433060 | Msa0850520 | -0.802399 | 5.715498e-49 | -8.615850e-47 |
| Msa0433060 | Msa0929700 | 0.840680 | 7.515371e-58 | -8.615850e-47 |
| Msa0433060 | Msa0930100 | 0.822880 | 1.869349e-53 | -8.615850e-47 |
| Msa0433060 | Msa0930890 | 0.822558 | 2.221909e-53 | -8.615850e-47 |
| Msa0433060 | Msa0966110 | 0.819465 | 1.145049e-52 | -8.615850e-47 |
| Msa0433060 | Msa1004780 | 0.823102 | 1.659644e-53 | -8.615850e-47 |
| Msa0433060 | Msa1013430 | 0.804605 | 1.993385e-49 | -8.615850e-47 |
| Msa0433060 | Msa1022730 | 0.810384 | 1.184174e-50 | -8.615850e-47 |
| Msa0433060 | Msa1025200 | 0.827961 | 1.171524e-54 | -8.615850e-47 |
| Msa0433060 | Msa1025220 | 0.821138 | 4.735768e-53 | -8.615850e-47 |
| Msa0433060 | Msa1026710 | 0.838049 | 3.622166e-57 | -8.615850e-47 |
| Msa0433060 | Msa1031740 | 0.872562 | 2.891472e-67 | -8.615850e-47 |
| Msa0433060 | Msa1036880 | 0.826448 | 2.697792e-54 | -8.615850e-47 |
| Msa0433060 | Msa1047020 | 0.810555 | 1.087497e-50 | -8.615850e-47 |
| Msa0433060 | Msa1050100 | 0.806102 | 9.683526e-50 | -8.615850e-47 |
| Msa0433060 | Msa1068660 | 0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0433060 | Msa1070810 | 0.913673 | 4.683887e-84 | -8.615850e-47 |
| Msa0433060 | Msa1085850 | 0.992343 | 1.013830e-192 | -8.615850e-47 |
| Msa0433060 | Msa1115190 | 0.868350 | 6.969247e-66 | -8.615850e-47 |
| Msa0433060 | Msa1118790 | 0.898819 | 3.650216e-77 | -8.615850e-47 |
| Msa0433060 | Msa1126690 | 0.810065 | 1.387150e-50 | -8.615850e-47 |
| Msa0433060 | Msa1130680 | 0.850380 | 1.762576e-60 | -8.615850e-47 |
| Msa0433060 | Msa1136880 | 0.844533 | 7.129570e-59 | -8.615850e-47 |
| Msa0433060 | Msa1144610 | 0.804943 | 1.694723e-49 | -8.615850e-47 |
| Msa0433060 | Msa1158630 | 0.911110 | 8.807510e-83 | -8.615850e-47 |
| Msa0433060 | Msa1163980 | 0.851725 | 7.358597e-61 | -8.615850e-47 |
| Msa0433060 | Msa1165210 | 0.877262 | 7.234962e-69 | -8.615850e-47 |
| Msa0433060 | Msa1165800 | 0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa0433060 | Msa1219760 | 0.851817 | 6.929923e-61 | -8.615850e-47 |
| Msa0433060 | Msa1235950 | 0.835082 | 2.064212e-56 | -8.615850e-47 |
| Msa0433060 | Msa1235980 | 0.827389 | 1.607430e-54 | -8.615850e-47 |
| Msa0433060 | Msa1255830 | 0.814662 | 1.374546e-51 | -8.615850e-47 |
| Msa0433060 | Msa1255850 | 0.800141 | 1.656786e-48 | -8.615850e-47 |
| Msa0433060 | Msa1296090 | 0.802094 | 6.603453e-49 | -8.615850e-47 |
| Msa0433060 | Msa1316100 | 0.804068 | 2.580012e-49 | -8.615850e-47 |
| Msa0433060 | Msa1341780 | 0.881261 | 2.780400e-70 | -8.615850e-47 |
| Msa0433060 | Msa1347610 | 0.853753 | 1.939839e-61 | -8.615850e-47 |
| Msa0433060 | Msa1351020 | 0.811071 | 8.408011e-51 | -8.615850e-47 |
| Msa0433060 | Msa1351910 | 0.812327 | 4.482776e-51 | -8.615850e-47 |
| Msa0433060 | Msa1353300 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0433060 | Msa1364810 | 0.808058 | 3.732880e-50 | -8.615850e-47 |
| Msa0433060 | Msa1367540 | 0.839797 | 1.277983e-57 | -8.615850e-47 |
| Msa0433060 | Msa1385480 | 0.821243 | 4.478830e-53 | -8.615850e-47 |
| Msa0433060 | Msa1403520 | 0.849138 | 3.918142e-60 | -8.615850e-47 |
| Msa0433060 | Msa1421510 | 0.812106 | 5.008314e-51 | -8.615850e-47 |
| Msa0433060 | Msa1424570 | 0.807192 | 5.698690e-50 | -8.615850e-47 |
| Msa0433060 | Msa1450560 | 0.833652 | 4.715309e-56 | -8.615850e-47 |
| Msa0433060 | Msa1462580 | 0.856505 | 3.075337e-62 | -8.615850e-47 |
| Msa0270160 | Msa0433060 | 0.855404 | 6.453081e-62 | -8.615850e-47 |
| Msa0277600 | Msa0433060 | 0.861288 | 1.139507e-63 | -8.615850e-47 |
| Msa0281330 | Msa0433060 | 0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0301250 | Msa0433060 | 0.809583 | 1.761525e-50 | -8.615850e-47 |
| Msa0313060 | Msa0433060 | 0.843928 | 1.036093e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433060 | MtrunA17_Chr3g0138631 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Msa0433060 | MtrunA17_Chr5g0436791 | 91.641 | 323 | 27 | 0 | 1 | 323 | 1 | 323 | 0.0 | 559 |
| Msa0433060 | MtrunA17_Chr1g0168061 | 100.000 | 81 | 0 | 0 | 243 | 323 | 1 | 81 | 7.70e-49 | 158 |
| Msa0433060 | MtrunA17_Chr7g0222411 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 7.37e-42 | 143 |
| Msa0433060 | MtrunA17_Chr7g0272291 | 68.539 | 89 | 27 | 1 | 11 | 98 | 7 | 95 | 2.52e-34 | 121 |
| Msa0433060 | MtrunA17_Chr3g0115971 | 54.630 | 108 | 27 | 2 | 63 | 169 | 8 | 94 | 1.73e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0433060 | AT2G40010.1 | 84.112 | 321 | 47 | 1 | 1 | 321 | 1 | 317 | 0.0 | 523 |
| Msa0433060 | AT3G09200.1 | 89.493 | 276 | 29 | 0 | 3 | 278 | 2 | 277 | 1.48e-180 | 501 |
| Msa0433060 | AT3G11250.1 | 88.406 | 276 | 32 | 0 | 3 | 278 | 2 | 277 | 1.11e-178 | 497 |
| Msa0433060 | AT3G09200.2 | 78.623 | 276 | 26 | 1 | 3 | 278 | 2 | 244 | 5.26e-150 | 423 |
| Msa0433060 | AT1G25260.1 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 4.34e-11 | 62.4 |
Find 132 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACTAAGATAGGTATTT+TGG | 0.121345 | 3_2:+85369976 | Msa0433060:five_prime_UTR |
| TCCTCCTTGGCAGCTGCAGC+AGG | 0.147360 | 3_2:-85372550 | None:intergenic |
| CAAACCCAGTGGGCCTAAAA+AGG | 0.215339 | 3_2:+85370088 | Msa0433060:five_prime_UTR |
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3_2:+85371918 | Msa0433060:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3_2:-85370405 | None:intergenic |
| GCCCCAGCTGCTGCTGCGTC+TGG | 0.268454 | 3_2:+85372520 | Msa0433060:CDS |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3_2:+85372250 | Msa0433060:CDS |
| CACCAGACGCAGCAGCAGCT+GGG | 0.284716 | 3_2:-85372522 | None:intergenic |
| GTGACTTGTGTTTGCCTCCT+AGG | 0.293721 | 3_2:+85372802 | Msa0433060:three_prime_UTR |
| CCACCAGACGCAGCAGCAGC+TGG | 0.308640 | 3_2:-85372523 | None:intergenic |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3_2:-85370350 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3_2:-85372024 | None:intergenic |
| TTGTAGCAAAGTTTGCTATT+GGG | 0.333543 | 3_2:+85372222 | Msa0433060:CDS |
| TCAAAACTTCAGAATGGTTT+GGG | 0.337661 | 3_2:-85369957 | None:intergenic |
| GATTAAAGAGAGGAAATTAA+AGG | 0.339368 | 3_2:-85370272 | None:intergenic |
| TTCAAAACTTCAGAATGGTT+TGG | 0.345461 | 3_2:-85369958 | None:intergenic |
| CTTGTAGCAAAGTTTGCTAT+TGG | 0.351992 | 3_2:+85372221 | Msa0433060:CDS |
| TCTTCATCAGACTCTTCTTC+AGG | 0.361468 | 3_2:-85372589 | None:intergenic |
| GAGTTCGGTAGTCAAATTAC+TGG | 0.379800 | 3_2:+85372841 | Msa0433060:three_prime_UTR |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3_2:+85372104 | Msa0433060:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3_2:-85372368 | None:intergenic |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3_2:-85370545 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3_2:-85370344 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3_2:+85371846 | Msa0433060:CDS |
| CTCCTTGGCAGCTGCAGCAG+GGG | 0.398915 | 3_2:-85372548 | None:intergenic |
| TTCCTTCTTTGCCTCCTCCT+TGG | 0.403009 | 3_2:-85372563 | None:intergenic |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3_2:-85372321 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3_2:-85371874 | None:intergenic |
| TGCCCCTGCTGCAGCTGCCA+AGG | 0.415195 | 3_2:+85372546 | Msa0433060:CDS |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3_2:-85372019 | None:intergenic |
| CCTCCTTGGCAGCTGCAGCA+GGG | 0.416133 | 3_2:-85372549 | None:intergenic |
| ACAGCTACAGCAAACTTACT+TGG | 0.421114 | 3_2:-85372493 | None:intergenic |
| GACATTGGTTTCGGTCTGTT+TGG | 0.422303 | 3_2:+85372610 | Msa0433060:CDS |
| TCTGATGAAGACATTGGTTT+CGG | 0.427250 | 3_2:+85372601 | Msa0433060:CDS |
| CCAGCTGCTGCTGCGTCTGG+TGG | 0.429030 | 3_2:+85372523 | Msa0433060:CDS |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3_2:-85371895 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3_2:-85372059 | None:intergenic |
| TGCCTCAGGGAAAGAATATT+CGG | 0.435165 | 3_2:-85372354 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3_2:+85370474 | Msa0433060:CDS |
| GAGAGAGAGTGAGCGTGAAA+TGG | 0.445704 | 3_2:-85370154 | None:intergenic |
| AGATTTCATGAGATCATACT+TGG | 0.450081 | 3_2:+85372686 | Msa0433060:three_prime_UTR |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3_2:-85372191 | None:intergenic |
| AGAGTGAGCGTGAAATGGTT+GGG | 0.451243 | 3_2:-85370149 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3_2:-85372135 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3_2:-85370404 | None:intergenic |
| GAGAGTGAGCGTGAAATGGT+TGG | 0.454050 | 3_2:-85370150 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3_2:-85370574 | None:intergenic |
| TGCTGCAGCTGCCAAGGAGG+AGG | 0.457641 | 3_2:+85372552 | Msa0433060:CDS |
| GCGTGAAATGGTTGGGAAGC+GGG | 0.460938 | 3_2:-85370142 | None:intergenic |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.463407 | 3_2:+85372367 | Msa0433060:CDS |
| GATCATACTTGGTTCATTCT+CGG | 0.466035 | 3_2:+85372697 | Msa0433060:three_prime_UTR |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3_2:+85371490 | Msa0433060:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3_2:+85371877 | Msa0433060:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3_2:+85370444 | Msa0433060:CDS |
| TGCCAAGGAGGAGGCAAAGA+AGG | 0.475094 | 3_2:+85372561 | Msa0433060:CDS |
| TGTAGCAAAGTTTGCTATTG+GGG | 0.476436 | 3_2:+85372223 | Msa0433060:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3_2:-85372283 | None:intergenic |
| ATTAAAGAGAGGAAATTAAA+GGG | 0.479325 | 3_2:-85370271 | None:intergenic |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3_2:-85372284 | None:intergenic |
| TAGTCAAATTACTGGTGATT+CGG | 0.490669 | 3_2:+85372849 | Msa0433060:three_prime_UTR |
| CTTAGTTCAAAACTTCAGAA+TGG | 0.491518 | 3_2:-85369963 | None:intergenic |
| ACCAGACGCAGCAGCAGCTG+GGG | 0.494428 | 3_2:-85372521 | None:intergenic |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.495280 | 3_2:+85372232 | Msa0433060:CDS |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3_2:+85372155 | Msa0433060:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3_2:+85372111 | Msa0433060:CDS |
| CTTGACTGAACTATACGTCT+TGG | 0.501972 | 3_2:+85370248 | Msa0433060:five_prime_UTR |
| AGTCAAAATATAACATGGAA+TGG | 0.503032 | 3_2:-85372742 | None:intergenic |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3_2:-85370384 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3_2:-85372020 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3_2:-85371850 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3_2:+85370526 | Msa0433060:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3_2:-85372117 | None:intergenic |
| TTTGGGAGTTAACTCTCAAT+CGG | 0.526599 | 3_2:-85369940 | None:intergenic |
| TTCTTTCCCTGAGGCAGACA+AGG | 0.529015 | 3_2:+85372361 | Msa0433060:CDS |
| CCCTGCTGCAGCTGCCAAGG+AGG | 0.530721 | 3_2:+85372549 | Msa0433060:CDS |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3_2:-85370340 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3_2:-85372134 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3_2:+85371841 | Msa0433060:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3_2:-85372302 | None:intergenic |
| AGCGTGAAATGGTTGGGAAG+CGG | 0.536246 | 3_2:-85370143 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3_2:-85371916 | None:intergenic |
| GTGCTGAATCAGGGTAATGT+TGG | 0.549672 | 3_2:+85371461 | Msa0433060:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3_2:-85370567 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3_2:+85372071 | Msa0433060:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3_2:+85372059 | Msa0433060:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3_2:+85371886 | Msa0433060:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3_2:+85372016 | Msa0433060:CDS |
| CAATAGCAAACTTTGCTACA+AGG | 0.567134 | 3_2:-85372220 | None:intergenic |
| GAAGAGTCTGATGAAGACAT+TGG | 0.571608 | 3_2:+85372595 | Msa0433060:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3_2:-85372058 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3_2:-85370411 | None:intergenic |
| ATAACAAACCTGGAAGAAAG+AGG | 0.579894 | 3_2:-85371926 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3_2:+85370475 | Msa0433060:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3_2:-85370506 | None:intergenic |
| CAAATTAAAAGTTAAAACCT+AGG | 0.589132 | 3_2:-85372819 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3_2:-85372367 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3_2:-85371915 | None:intergenic |
| CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 3_2:-85372492 | None:intergenic |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3_2:-85372273 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3_2:-85370573 | None:intergenic |
| TTTGGAAGGAACGAAACGAA+GGG | 0.608382 | 3_2:-85370194 | None:intergenic |
| GGGAGTTAACTCTCAATCGG+TGG | 0.609159 | 3_2:-85369937 | None:intergenic |
| AAAAGAGCAGGTTAAAGTGA+CGG | 0.611034 | 3_2:+85370215 | Msa0433060:five_prime_UTR |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3_2:+85371887 | Msa0433060:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3_2:+85372025 | Msa0433060:CDS |
| AACAACAACAAAATCAACAA+TGG | 0.626124 | 3_2:+85370309 | Msa0433060:exon |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3_2:+85371520 | Msa0433060:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3_2:-85372294 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3_2:+85370445 | Msa0433060:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3_2:+85370415 | Msa0433060:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3_2:+85372175 | Msa0433060:CDS |
| ATTAAAAGTTAAAACCTAGG+AGG | 0.636784 | 3_2:-85372816 | None:intergenic |
| GGGGCCGTGAGCAAAAGAAG+GGG | 0.640653 | 3_2:+85370009 | Msa0433060:five_prime_UTR |
| GATAAAGTCAAAATATAACA+TGG | 0.649347 | 3_2:-85372747 | None:intergenic |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3_2:-85372249 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3_2:+85372379 | Msa0433060:CDS |
| CAAGACGTATAGTTCAGTCA+AGG | 0.663107 | 3_2:-85370247 | None:intergenic |
| GTTCTTTCCCATGAGAACAA+CGG | 0.664224 | 3_2:-85370482 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3_2:+85372017 | Msa0433060:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3_2:+85370454 | Msa0433060:CDS |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3_2:+85372043 | Msa0433060:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3_2:+85372067 | Msa0433060:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3_2:-85371892 | None:intergenic |
| TACCGAATATTCTTTCCCTG+AGG | 0.697745 | 3_2:+85372352 | Msa0433060:CDS |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3_2:-85372190 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3_2:+85372193 | Msa0433060:CDS |
| AAACACTTAGCAAACCCAGT+GGG | 0.712309 | 3_2:+85370078 | Msa0433060:five_prime_UTR |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3_2:-85372157 | None:intergenic |
| GACGTATAGTTCAGTCAAGG+CGG | 0.717823 | 3_2:-85370244 | None:intergenic |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3_2:-85372057 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3_2:-85372205 | None:intergenic |
| AAAACACTTAGCAAACCCAG+TGG | 0.777128 | 3_2:+85370077 | Msa0433060:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTAAAAAAAAAAA+AGG | + | chr3_2:85372907-85372926 | Msa0433060:three_prime_UTR | 0.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3_2:85370794-85370813 | Msa0433060:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3_2:85370939-85370958 | None:intergenic | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3_2:85370942-85370961 | Msa0433060:intron | 15.0% |
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3_2:85370943-85370962 | Msa0433060:intron | 15.0% |
| !! | AATCAAAGAATAAGAAAAAT+GGG | - | chr3_2:85372456-85372475 | None:intergenic | 15.0% |
| !! | AAATCAAAGAATAAGAAAAA+TGG | - | chr3_2:85372457-85372476 | None:intergenic | 15.0% |
| !!! | TTTAACTTTTAATTTGAGTT+CGG | + | chr3_2:85372826-85372845 | Msa0433060:three_prime_UTR | 15.0% |
| !! | ATTAAAGAGAGGAAATTAAA+GGG | - | chr3_2:85370274-85370293 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3_2:85370793-85370812 | Msa0433060:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3_2:85370795-85370814 | Msa0433060:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3_2:85371216-85371235 | None:intergenic | 20.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3_2:85371819-85371838 | Msa0433060:intron | 20.0% |
| !! | GATAAAGTCAAAATATAACA+TGG | - | chr3_2:85372750-85372769 | None:intergenic | 20.0% |
| !!! | TTCTCGTTTTAAATTCTATA+TGG | + | chr3_2:85372775-85372794 | Msa0433060:three_prime_UTR | 20.0% |
| !! | CAAATTAAAAGTTAAAACCT+AGG | - | chr3_2:85372822-85372841 | None:intergenic | 20.0% |
| !! | TTGAACTAAGATAGGTATTT+TGG | + | chr3_2:85369976-85369995 | Msa0433060:five_prime_UTR | 25.0% |
| !! | TGAACTAAGATAGGTATTTT+GGG | + | chr3_2:85369977-85369996 | Msa0433060:five_prime_UTR | 25.0% |
| ! | GATTAAAGAGAGGAAATTAA+AGG | - | chr3_2:85370275-85370294 | None:intergenic | 25.0% |
| !!! | TGATTTTGTTGTTGTTGATA+GGG | - | chr3_2:85370305-85370324 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTGTTGTTGAT+AGG | - | chr3_2:85370306-85370325 | None:intergenic | 25.0% |
| ! | AACAACAACAAAATCAACAA+TGG | + | chr3_2:85370309-85370328 | Msa0433060:exon | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3_2:85370649-85370668 | Msa0433060:intron | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3_2:85370685-85370704 | Msa0433060:intron | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3_2:85370871-85370890 | Msa0433060:intron | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3_2:85370872-85370891 | Msa0433060:intron | 25.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3_2:85371402-85371421 | Msa0433060:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3_2:85371567-85371586 | Msa0433060:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3_2:85371713-85371732 | None:intergenic | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3_2:85371714-85371733 | None:intergenic | 25.0% |
| ! | TTAAAAGAAGATAACAAACC+TGG | - | chr3_2:85371939-85371958 | None:intergenic | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3_2:85371986-85372005 | Msa0433060:intron | 25.0% |
| !!! | ATAAGAAAAATGGGAGTATT+GGG | - | chr3_2:85372447-85372466 | None:intergenic | 25.0% |
| !! | AATAAGAAAAATGGGAGTAT+TGG | - | chr3_2:85372448-85372467 | None:intergenic | 25.0% |
| !!! | TTCTTTAGTTTTGCTATTAG+TGG | + | chr3_2:85372644-85372663 | Msa0433060:three_prime_UTR | 25.0% |
| ! | AGTCAAAATATAACATGGAA+TGG | - | chr3_2:85372745-85372764 | None:intergenic | 25.0% |
| ! | ATTAAAAGTTAAAACCTAGG+AGG | - | chr3_2:85372819-85372838 | None:intergenic | 25.0% |
| TCAAAACTTCAGAATGGTTT+GGG | - | chr3_2:85369960-85369979 | None:intergenic | 30.0% | |
| TTCAAAACTTCAGAATGGTT+TGG | - | chr3_2:85369961-85369980 | None:intergenic | 30.0% | |
| CTTAGTTCAAAACTTCAGAA+TGG | - | chr3_2:85369966-85369985 | None:intergenic | 30.0% | |
| !!! | CTGAAGTTTTGAACTAAGAT+AGG | + | chr3_2:85369968-85369987 | Msa0433060:five_prime_UTR | 30.0% |
| ! | GAACTAAGATAGGTATTTTG+GGG | + | chr3_2:85369978-85369997 | Msa0433060:five_prime_UTR | 30.0% |
| ! | GGCGCAAAGATTTTATATTA+GGG | - | chr3_2:85370124-85370143 | None:intergenic | 30.0% |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3_2:85370616-85370635 | Msa0433060:intron | 30.0% | |
| AAATAATACATAGGGTCTGT+TGG | + | chr3_2:85370951-85370970 | Msa0433060:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+GGG | + | chr3_2:85370952-85370971 | Msa0433060:intron | 30.0% | |
| TAGTGAGAACTTGTGAATTA+AGG | + | chr3_2:85371125-85371144 | Msa0433060:intron | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3_2:85371188-85371207 | Msa0433060:intron | 30.0% | |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3_2:85371189-85371208 | Msa0433060:intron | 30.0% | |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3_2:85371434-85371453 | Msa0433060:intron | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3_2:85371479-85371498 | Msa0433060:CDS | 30.0% |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3_2:85371520-85371539 | Msa0433060:CDS | 30.0% | |
| ACTAGAGGTGACAAAAAAAA+TGG | - | chr3_2:85371639-85371658 | None:intergenic | 30.0% | |
| ! | AATACTTTTCGTTTGATGCA+TGG | + | chr3_2:85371733-85371752 | Msa0433060:intron | 30.0% |
| CATTCAACAAACAAAACAAG+TGG | - | chr3_2:85371786-85371805 | None:intergenic | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3_2:85371823-85371842 | Msa0433060:intron | 30.0% | |
| !! | TTGTAGCAAAGTTTGCTATT+GGG | + | chr3_2:85372222-85372241 | Msa0433060:CDS | 30.0% |
| AGATTTCATGAGATCATACT+TGG | + | chr3_2:85372686-85372705 | Msa0433060:three_prime_UTR | 30.0% | |
| TAGTCAAATTACTGGTGATT+CGG | + | chr3_2:85372849-85372868 | Msa0433060:three_prime_UTR | 30.0% | |
| TTTGGGAGTTAACTCTCAAT+CGG | - | chr3_2:85369943-85369962 | None:intergenic | 35.0% | |
| ! | GGGCGCAAAGATTTTATATT+AGG | - | chr3_2:85370125-85370144 | None:intergenic | 35.0% |
| ! | TTTAACCTGCTCTTTTTGGA+AGG | - | chr3_2:85370211-85370230 | None:intergenic | 35.0% |
| ! | TCACTTTAACCTGCTCTTTT+TGG | - | chr3_2:85370215-85370234 | None:intergenic | 35.0% |
| AAAAGAGCAGGTTAAAGTGA+CGG | + | chr3_2:85370215-85370234 | Msa0433060:five_prime_UTR | 35.0% | |
| !!! | GGGTTTTGAAGATTAAAGAG+AGG | - | chr3_2:85370285-85370304 | None:intergenic | 35.0% |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3_2:85370576-85370595 | None:intergenic | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3_2:85370577-85370596 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3_2:85371190-85371209 | Msa0433060:intron | 35.0% | |
| GCAATAACTGTCTCTTTGTT+TGG | - | chr3_2:85371318-85371337 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3_2:85371490-85371509 | Msa0433060:CDS | 35.0% | |
| !!! | TTTTTTTGTCACCTCTAGTG+AGG | + | chr3_2:85371640-85371659 | Msa0433060:intron | 35.0% |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr3_2:85371929-85371948 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3_2:85372017-85372036 | Msa0433060:CDS | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3_2:85372022-85372041 | None:intergenic | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3_2:85372060-85372079 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3_2:85372061-85372080 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3_2:85372067-85372086 | Msa0433060:CDS | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3_2:85372071-85372090 | Msa0433060:CDS | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3_2:85372160-85372179 | None:intergenic | 35.0% | |
| CAATAGCAAACTTTGCTACA+AGG | - | chr3_2:85372223-85372242 | None:intergenic | 35.0% | |
| !! | CTTGTAGCAAAGTTTGCTAT+TGG | + | chr3_2:85372221-85372240 | Msa0433060:CDS | 35.0% |
| !! | TGTAGCAAAGTTTGCTATTG+GGG | + | chr3_2:85372223-85372242 | Msa0433060:CDS | 35.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3_2:85372324-85372343 | None:intergenic | 35.0% | |
| ATGTTGAAGTCAATACCTTC+AGG | - | chr3_2:85372397-85372416 | None:intergenic | 35.0% | |
| !! | CTTTGATTTTTGTTCACTGC+AGG | + | chr3_2:85372468-85372487 | Msa0433060:intron | 35.0% |
| !! | TCTGATGAAGACATTGGTTT+CGG | + | chr3_2:85372601-85372620 | Msa0433060:CDS | 35.0% |
| GATCATACTTGGTTCATTCT+CGG | + | chr3_2:85372697-85372716 | Msa0433060:three_prime_UTR | 35.0% | |
| !! | TAGGTATTTTGGGGAGTTTG+AGG | + | chr3_2:85369987-85370006 | Msa0433060:five_prime_UTR | 40.0% |
| !! | AGGTATTTTGGGGAGTTTGA+GGG | + | chr3_2:85369988-85370007 | Msa0433060:five_prime_UTR | 40.0% |
| AAAACACTTAGCAAACCCAG+TGG | + | chr3_2:85370077-85370096 | Msa0433060:five_prime_UTR | 40.0% | |
| AAACACTTAGCAAACCCAGT+GGG | + | chr3_2:85370078-85370097 | Msa0433060:five_prime_UTR | 40.0% | |
| !!! | AAACGAAGGGTTTTAGGGTT+CGG | - | chr3_2:85370184-85370203 | None:intergenic | 40.0% |
| ! | GAACGAAACGAAGGGTTTTA+GGG | - | chr3_2:85370189-85370208 | None:intergenic | 40.0% |
| TTTGGAAGGAACGAAACGAA+GGG | - | chr3_2:85370197-85370216 | None:intergenic | 40.0% | |
| !! | TTTTGGAAGGAACGAAACGA+AGG | - | chr3_2:85370198-85370217 | None:intergenic | 40.0% |
| CAAGACGTATAGTTCAGTCA+AGG | - | chr3_2:85370250-85370269 | None:intergenic | 40.0% | |
| CTTGACTGAACTATACGTCT+TGG | + | chr3_2:85370248-85370267 | Msa0433060:five_prime_UTR | 40.0% | |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3_2:85370353-85370372 | None:intergenic | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3_2:85370407-85370426 | None:intergenic | 40.0% |
| GTTCTTTCCCATGAGAACAA+CGG | - | chr3_2:85370485-85370504 | None:intergenic | 40.0% | |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3_2:85370548-85370567 | None:intergenic | 40.0% |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3_2:85370570-85370589 | None:intergenic | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3_2:85370809-85370828 | Msa0433060:intron | 40.0% |
| !! | GTCTCTTTGTTTGGTGCTTA+TGG | - | chr3_2:85371309-85371328 | None:intergenic | 40.0% |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3_2:85371452-85371471 | Msa0433060:intron | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3_2:85372016-85372035 | Msa0433060:CDS | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3_2:85372023-85372042 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3_2:85372027-85372046 | None:intergenic | 40.0% | |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3_2:85372025-85372044 | Msa0433060:CDS | 40.0% |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3_2:85372043-85372062 | Msa0433060:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3_2:85372062-85372081 | None:intergenic | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3_2:85372059-85372078 | Msa0433060:CDS | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3_2:85372155-85372174 | Msa0433060:CDS | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3_2:85372252-85372271 | None:intergenic | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3_2:85372250-85372269 | Msa0433060:CDS | 40.0% | |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3_2:85372305-85372324 | None:intergenic | 40.0% |
| TACCGAATATTCTTTCCCTG+AGG | + | chr3_2:85372352-85372371 | Msa0433060:CDS | 40.0% | |
| TGCCTCAGGGAAAGAATATT+CGG | - | chr3_2:85372357-85372376 | None:intergenic | 40.0% | |
| CAGCTACAGCAAACTTACTT+GGG | - | chr3_2:85372495-85372514 | None:intergenic | 40.0% | |
| ACAGCTACAGCAAACTTACT+TGG | - | chr3_2:85372496-85372515 | None:intergenic | 40.0% | |
| TCTTCATCAGACTCTTCTTC+AGG | - | chr3_2:85372592-85372611 | None:intergenic | 40.0% | |
| GAAGAGTCTGATGAAGACAT+TGG | + | chr3_2:85372595-85372614 | Msa0433060:CDS | 40.0% | |
| GAGTTCGGTAGTCAAATTAC+TGG | + | chr3_2:85372841-85372860 | Msa0433060:three_prime_UTR | 40.0% | |
| !! | GGTATTTTGGGGAGTTTGAG+GGG | + | chr3_2:85369989-85370008 | Msa0433060:five_prime_UTR | 45.0% |
| !! | GTATTTTGGGGAGTTTGAGG+GGG | + | chr3_2:85369990-85370009 | Msa0433060:five_prime_UTR | 45.0% |
| ! | TAAGCCCCTTCTTTTGCTCA+CGG | - | chr3_2:85370016-85370035 | None:intergenic | 45.0% |
| AAACCCAGTGGGCCTAAAAA+GGG | + | chr3_2:85370089-85370108 | Msa0433060:five_prime_UTR | 45.0% | |
| ! | GGGTTTTCTCTGCCCTTTTT+AGG | - | chr3_2:85370104-85370123 | None:intergenic | 45.0% |
| AGAGTGAGCGTGAAATGGTT+GGG | - | chr3_2:85370152-85370171 | None:intergenic | 45.0% | |
| ! | GGAACGAAACGAAGGGTTTT+AGG | - | chr3_2:85370190-85370209 | None:intergenic | 45.0% |
| TCGTTCCTTCCAAAAAGAGC+AGG | + | chr3_2:85370203-85370222 | Msa0433060:five_prime_UTR | 45.0% | |
| GACGTATAGTTCAGTCAAGG+CGG | - | chr3_2:85370247-85370266 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3_2:85370387-85370406 | None:intergenic | 45.0% | |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3_2:85370408-85370427 | None:intergenic | 45.0% |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3_2:85370444-85370463 | Msa0433060:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3_2:85370445-85370464 | Msa0433060:CDS | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3_2:85370509-85370528 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3_2:85371206-85371225 | None:intergenic | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3_2:85371451-85371470 | Msa0433060:intron | 45.0% | |
| GTGCTGAATCAGGGTAATGT+TGG | + | chr3_2:85371461-85371480 | Msa0433060:intron | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3_2:85371877-85371896 | None:intergenic | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3_2:85371877-85371896 | Msa0433060:CDS | 45.0% | |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3_2:85371918-85371937 | None:intergenic | 45.0% |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3_2:85371919-85371938 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3_2:85371918-85371937 | Msa0433060:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3_2:85372111-85372130 | Msa0433060:CDS | 45.0% | |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3_2:85372120-85372139 | None:intergenic | 45.0% | |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3_2:85372125-85372144 | Msa0433060:CDS | 45.0% |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3_2:85372126-85372145 | Msa0433060:CDS | 45.0% |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3_2:85372137-85372156 | None:intergenic | 45.0% | |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3_2:85372232-85372251 | Msa0433060:CDS | 45.0% |
| !! | CAAGGTTAAGGAGTACCTGA+AGG | + | chr3_2:85372379-85372398 | Msa0433060:CDS | 45.0% |
| !! | GACATTGGTTTCGGTCTGTT+TGG | + | chr3_2:85372610-85372629 | Msa0433060:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3_2:85371027-85371046 | None:intergenic | 5.0% |
| GGGAGTTAACTCTCAATCGG+TGG | - | chr3_2:85369940-85369959 | None:intergenic | 50.0% | |
| CAAACCCAGTGGGCCTAAAA+AGG | + | chr3_2:85370088-85370107 | Msa0433060:five_prime_UTR | 50.0% | |
| AGCGTGAAATGGTTGGGAAG+CGG | - | chr3_2:85370146-85370165 | None:intergenic | 50.0% | |
| GAGAGTGAGCGTGAAATGGT+TGG | - | chr3_2:85370153-85370172 | None:intergenic | 50.0% | |
| GAGAGAGAGTGAGCGTGAAA+TGG | - | chr3_2:85370157-85370176 | None:intergenic | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3_2:85370343-85370362 | None:intergenic | 50.0% |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3_2:85370347-85370366 | None:intergenic | 50.0% | |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3_2:85370414-85370433 | None:intergenic | 50.0% |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3_2:85370415-85370434 | Msa0433060:CDS | 50.0% | |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3_2:85370454-85370473 | Msa0433060:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3_2:85370474-85370493 | Msa0433060:CDS | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3_2:85370475-85370494 | Msa0433060:CDS | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3_2:85370526-85370545 | Msa0433060:CDS | 50.0% | |
| !! | TCACCTCTAGTGAGGTACTG+TGG | + | chr3_2:85371648-85371667 | Msa0433060:intron | 50.0% |
| CAACCACAGTACCTCACTAG+AGG | - | chr3_2:85371654-85371673 | None:intergenic | 50.0% | |
| GCATGGCAATTGCAGCAATG+TGG | + | chr3_2:85371750-85371769 | Msa0433060:intron | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3_2:85371887-85371906 | Msa0433060:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3_2:85372002-85372021 | None:intergenic | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3_2:85372104-85372123 | Msa0433060:CDS | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3_2:85372138-85372157 | None:intergenic | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3_2:85372175-85372194 | Msa0433060:CDS | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3_2:85372193-85372212 | None:intergenic | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3_2:85372194-85372213 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3_2:85372193-85372212 | Msa0433060:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3_2:85372208-85372227 | None:intergenic | 50.0% | |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3_2:85372276-85372295 | None:intergenic | 50.0% |
| GACGAACATATGAGGAGCAG+CGG | - | chr3_2:85372297-85372316 | None:intergenic | 50.0% | |
| TTCTTTCCCTGAGGCAGACA+AGG | + | chr3_2:85372361-85372380 | Msa0433060:CDS | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3_2:85372370-85372389 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3_2:85372371-85372390 | None:intergenic | 50.0% | |
| TTCCTTCTTTGCCTCCTCCT+TGG | - | chr3_2:85372566-85372585 | None:intergenic | 50.0% | |
| ! | GTGACTTGTGTTTGCCTCCT+AGG | + | chr3_2:85372802-85372821 | Msa0433060:three_prime_UTR | 50.0% |
| !! | CTGCCCTTTTTAGGCCCACT+GGG | - | chr3_2:85370095-85370114 | None:intergenic | 55.0% |
| !! | TCTGCCCTTTTTAGGCCCAC+TGG | - | chr3_2:85370096-85370115 | None:intergenic | 55.0% |
| GCGTGAAATGGTTGGGAAGC+GGG | - | chr3_2:85370145-85370164 | None:intergenic | 55.0% | |
| !!! | CGAAGGGTTTTAGGGTTCGG+TGG | - | chr3_2:85370181-85370200 | None:intergenic | 55.0% |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3_2:85371267-85371286 | None:intergenic | 55.0% | |
| AAGCGCGTACTCACTGCGTA+CGG | - | chr3_2:85371280-85371299 | None:intergenic | 55.0% | |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3_2:85371846-85371865 | Msa0433060:CDS | 55.0% |
| GCAACCAAACCAACACGAGC+AGG | - | chr3_2:85371853-85371872 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3_2:85371886-85371905 | Msa0433060:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3_2:85372133-85372152 | Msa0433060:CDS | 55.0% |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3_2:85372367-85372386 | Msa0433060:CDS | 55.0% | |
| TGCCAAGGAGGAGGCAAAGA+AGG | + | chr3_2:85372561-85372580 | Msa0433060:CDS | 55.0% | |
| AGGGGGCCGTGAGCAAAAGA+AGG | + | chr3_2:85370007-85370026 | Msa0433060:five_prime_UTR | 60.0% | |
| GGGGGCCGTGAGCAAAAGAA+GGG | + | chr3_2:85370008-85370027 | Msa0433060:five_prime_UTR | 60.0% | |
| GGGGCCGTGAGCAAAAGAAG+GGG | + | chr3_2:85370009-85370028 | Msa0433060:five_prime_UTR | 60.0% | |
| AGCGCGTACTCACTGCGTAC+GGG | - | chr3_2:85371279-85371298 | None:intergenic | 60.0% | |
| GCAGTGAGTACGCGCTTGTG+TGG | + | chr3_2:85371283-85371302 | Msa0433060:intron | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3_2:85371841-85371860 | Msa0433060:CDS | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3_2:85372286-85372305 | None:intergenic | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3_2:85372287-85372306 | None:intergenic | 60.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3_2:85371895-85371914 | None:intergenic | 65.0% | |
| ACCAGACGCAGCAGCAGCTG+GGG | - | chr3_2:85372524-85372543 | None:intergenic | 65.0% | |
| CACCAGACGCAGCAGCAGCT+GGG | - | chr3_2:85372525-85372544 | None:intergenic | 65.0% | |
| CTCCTTGGCAGCTGCAGCAG+GGG | - | chr3_2:85372551-85372570 | None:intergenic | 65.0% | |
| CCTCCTTGGCAGCTGCAGCA+GGG | - | chr3_2:85372552-85372571 | None:intergenic | 65.0% | |
| TCCTCCTTGGCAGCTGCAGC+AGG | - | chr3_2:85372553-85372572 | None:intergenic | 65.0% | |
| TGCTGCAGCTGCCAAGGAGG+AGG | + | chr3_2:85372552-85372571 | Msa0433060:CDS | 65.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3_2:85371898-85371917 | None:intergenic | 70.0% | |
| CCACCAGACGCAGCAGCAGC+TGG | - | chr3_2:85372526-85372545 | None:intergenic | 70.0% | |
| CCAGCTGCTGCTGCGTCTGG+TGG | + | chr3_2:85372523-85372542 | Msa0433060:CDS | 70.0% | |
| TGCCCCTGCTGCAGCTGCCA+AGG | + | chr3_2:85372546-85372565 | Msa0433060:CDS | 70.0% | |
| CCCTGCTGCAGCTGCCAAGG+AGG | + | chr3_2:85372549-85372568 | Msa0433060:CDS | 70.0% | |
| GCCCCAGCTGCTGCTGCGTC+TGG | + | chr3_2:85372520-85372539 | Msa0433060:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 85369934 | 85372933 | 85369934 | ID=Msa0433060;Name=Msa0433060 |
| chr3_2 | mRNA | 85369934 | 85372933 | 85369934 | ID=Msa0433060-mRNA-1;Parent=Msa0433060;Name=Msa0433060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=394|1|1|1|1|1|5|291|323 |
| chr3_2 | exon | 85369934 | 85370585 | 85369934 | ID=Msa0433060-mRNA-1:exon:24333;Parent=Msa0433060-mRNA-1 |
| chr3_2 | exon | 85371473 | 85371541 | 85371473 | ID=Msa0433060-mRNA-1:exon:24334;Parent=Msa0433060-mRNA-1 |
| chr3_2 | exon | 85371841 | 85371939 | 85371841 | ID=Msa0433060-mRNA-1:exon:24335;Parent=Msa0433060-mRNA-1 |
| chr3_2 | exon | 85372008 | 85372400 | 85372008 | ID=Msa0433060-mRNA-1:exon:24336;Parent=Msa0433060-mRNA-1 |
| chr3_2 | exon | 85372490 | 85372933 | 85372490 | ID=Msa0433060-mRNA-1:exon:24337;Parent=Msa0433060-mRNA-1 |
| chr3_2 | five_prime_UTR | 85369934 | 85370327 | 85369934 | ID=Msa0433060-mRNA-1:five_prime_utr;Parent=Msa0433060-mRNA-1 |
| chr3_2 | CDS | 85370328 | 85370585 | 85370328 | ID=Msa0433060-mRNA-1:cds;Parent=Msa0433060-mRNA-1 |
| chr3_2 | CDS | 85371473 | 85371541 | 85371473 | ID=Msa0433060-mRNA-1:cds;Parent=Msa0433060-mRNA-1 |
| chr3_2 | CDS | 85371841 | 85371939 | 85371841 | ID=Msa0433060-mRNA-1:cds;Parent=Msa0433060-mRNA-1 |
| chr3_2 | CDS | 85372008 | 85372400 | 85372008 | ID=Msa0433060-mRNA-1:cds;Parent=Msa0433060-mRNA-1 |
| chr3_2 | CDS | 85372490 | 85372642 | 85372490 | ID=Msa0433060-mRNA-1:cds;Parent=Msa0433060-mRNA-1 |
| chr3_2 | three_prime_UTR | 85372643 | 85372933 | 85372643 | ID=Msa0433060-mRNA-1:three_prime_utr;Parent=Msa0433060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
