Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524680 | XP_003603496.1 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524680 | sp|P50346|RLA0_SOYBN | 90.938 | 320 | 28 | 1 | 1 | 320 | 1 | 319 | 0.0 | 526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524680 | G7JC94 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016340 | Msa0524680 | 0.802441 | 5.602214e-49 | -8.615850e-47 |
| Msa0028150 | Msa0524680 | 0.815157 | 1.067423e-51 | -8.615850e-47 |
| Msa0071760 | Msa0524680 | 0.899930 | 1.216321e-77 | -8.615850e-47 |
| Msa0075730 | Msa0524680 | 0.816277 | 6.009083e-52 | -8.615850e-47 |
| Msa0086160 | Msa0524680 | 0.894701 | 1.925816e-75 | -8.615850e-47 |
| Msa0089540 | Msa0524680 | 0.860908 | 1.487498e-63 | -8.615850e-47 |
| Msa0114600 | Msa0524680 | 0.882255 | 1.214704e-70 | -8.615850e-47 |
| Msa0123290 | Msa0524680 | 0.808306 | 3.305111e-50 | -8.615850e-47 |
| Msa0123790 | Msa0524680 | 0.804296 | 2.313002e-49 | -8.615850e-47 |
| Msa0132460 | Msa0524680 | 0.857897 | 1.193544e-62 | -8.615850e-47 |
| Msa0149980 | Msa0524680 | 0.803337 | 3.657954e-49 | -8.615850e-47 |
| Msa0182050 | Msa0524680 | 0.853288 | 2.637820e-61 | -8.615850e-47 |
| Msa0182100 | Msa0524680 | 0.884255 | 2.242323e-71 | -8.615850e-47 |
| Msa0188740 | Msa0524680 | 0.834685 | 2.598151e-56 | -8.615850e-47 |
| Msa0192300 | Msa0524680 | 0.812257 | 4.644551e-51 | -8.615850e-47 |
| Msa0192490 | Msa0524680 | 0.806807 | 6.875626e-50 | -8.615850e-47 |
| Msa0223240 | Msa0524680 | 0.813371 | 2.647636e-51 | -8.615850e-47 |
| Msa0370350 | Msa0524680 | -0.805861 | 1.088049e-49 | -8.615850e-47 |
| Msa0371490 | Msa0524680 | 0.818895 | 1.543663e-52 | -8.615850e-47 |
| Msa0377370 | Msa0524680 | 0.871202 | 8.180786e-67 | -8.615850e-47 |
| Msa0383690 | Msa0524680 | 0.813688 | 2.254959e-51 | -8.615850e-47 |
| Msa0417850 | Msa0524680 | -0.821570 | 3.763404e-53 | -8.615850e-47 |
| Msa0419710 | Msa0524680 | 0.808895 | 2.473459e-50 | -8.615850e-47 |
| Msa0426940 | Msa0524680 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
| Msa0433060 | Msa0524680 | 0.999427 | 8.832583e-311 | -8.615850e-47 |
| Msa0450150 | Msa0524680 | 0.854737 | 1.008605e-61 | -8.615850e-47 |
| Msa0469740 | Msa0524680 | 0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa0270160 | Msa0524680 | 0.852667 | 3.970651e-61 | -8.615850e-47 |
| Msa0277600 | Msa0524680 | 0.861270 | 1.154712e-63 | -8.615850e-47 |
| Msa0301250 | Msa0524680 | 0.806557 | 7.762002e-50 | -8.615850e-47 |
| Msa0313060 | Msa0524680 | 0.840534 | 8.207340e-58 | -8.615850e-47 |
| Msa0521730 | Msa0524680 | 0.886756 | 2.592568e-72 | -8.615850e-47 |
| Msa0524680 | Msa0547920 | 0.845057 | 5.150047e-59 | -8.615850e-47 |
| Msa0524680 | Msa0550490 | 0.875461 | 3.025674e-68 | -8.615850e-47 |
| Msa0524680 | Msa0568380 | 0.825370 | 4.864488e-54 | -8.615850e-47 |
| Msa0524680 | Msa0573550 | 0.822287 | 2.568191e-53 | -8.615850e-47 |
| Msa0524680 | Msa0581440 | -0.802311 | 5.959521e-49 | -8.615850e-47 |
| Msa0524680 | Msa0585570 | 0.877714 | 5.033858e-69 | -8.615850e-47 |
| Msa0524680 | Msa0587830 | 0.826827 | 2.190579e-54 | -8.615850e-47 |
| Msa0524680 | Msa0602900 | 0.853366 | 2.505244e-61 | -8.615850e-47 |
| Msa0524680 | Msa0609120 | 0.815855 | 7.465126e-52 | -8.615850e-47 |
| Msa0524680 | Msa0643960 | 0.857081 | 2.081407e-62 | -8.615850e-47 |
| Msa0524680 | Msa0655710 | 0.802640 | 5.098305e-49 | -8.615850e-47 |
| Msa0524680 | Msa0663400 | 0.875801 | 2.313340e-68 | -8.615850e-47 |
| Msa0524680 | Msa0708630 | 0.858893 | 6.025179e-63 | -8.615850e-47 |
| Msa0524680 | Msa0715970 | 0.820064 | 8.355861e-53 | -8.615850e-47 |
| Msa0524680 | Msa0741510 | 0.807949 | 3.936361e-50 | -8.615850e-47 |
| Msa0524680 | Msa0790450 | 0.837253 | 5.796949e-57 | -8.615850e-47 |
| Msa0524680 | Msa0798590 | 0.861193 | 1.218641e-63 | -8.615850e-47 |
| Msa0524680 | Msa0812240 | 0.836306 | 1.010698e-56 | -8.615850e-47 |
| Msa0524680 | Msa0850520 | -0.800416 | 1.455898e-48 | -8.615850e-47 |
| Msa0524680 | Msa0929700 | 0.838434 | 2.881948e-57 | -8.615850e-47 |
| Msa0524680 | Msa0930100 | 0.817327 | 3.492713e-52 | -8.615850e-47 |
| Msa0524680 | Msa0930890 | 0.820972 | 5.170705e-53 | -8.615850e-47 |
| Msa0524680 | Msa0966110 | 0.817088 | 3.952356e-52 | -8.615850e-47 |
| Msa0524680 | Msa1004780 | 0.817945 | 2.533500e-52 | -8.615850e-47 |
| Msa0524680 | Msa1013430 | 0.804605 | 1.993385e-49 | -8.615850e-47 |
| Msa0524680 | Msa1022730 | 0.810995 | 8.736531e-51 | -8.615850e-47 |
| Msa0524680 | Msa1025200 | 0.825286 | 5.092896e-54 | -8.615850e-47 |
| Msa0524680 | Msa1025220 | 0.819456 | 1.150685e-52 | -8.615850e-47 |
| Msa0524680 | Msa1026710 | 0.834653 | 2.645955e-56 | -8.615850e-47 |
| Msa0524680 | Msa1031740 | 0.873045 | 1.991917e-67 | -8.615850e-47 |
| Msa0524680 | Msa1036880 | 0.826079 | 3.302502e-54 | -8.615850e-47 |
| Msa0524680 | Msa1047020 | 0.808744 | 2.664549e-50 | -8.615850e-47 |
| Msa0524680 | Msa1050100 | 0.801368 | 9.306578e-49 | -8.615850e-47 |
| Msa0524680 | Msa1068660 | 0.801598 | 8.350063e-49 | -8.615850e-47 |
| Msa0524680 | Msa1070810 | 0.910807 | 1.239366e-82 | -8.615850e-47 |
| Msa0524680 | Msa1085850 | 0.991631 | 1.101746e-188 | -8.615850e-47 |
| Msa0524680 | Msa1115190 | 0.866411 | 2.908758e-65 | -8.615850e-47 |
| Msa0524680 | Msa1118790 | 0.898669 | 4.229485e-77 | -8.615850e-47 |
| Msa0524680 | Msa1126690 | 0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa0524680 | Msa1130680 | 0.849007 | 4.260801e-60 | -8.615850e-47 |
| Msa0524680 | Msa1136880 | 0.841097 | 5.842354e-58 | -8.615850e-47 |
| Msa0524680 | Msa1144610 | 0.803900 | 2.795410e-49 | -8.615850e-47 |
| Msa0524680 | Msa1158630 | 0.908128 | 2.398373e-81 | -8.615850e-47 |
| Msa0524680 | Msa1163980 | 0.850660 | 1.470961e-60 | -8.615850e-47 |
| Msa0524680 | Msa1165210 | 0.877970 | 4.097739e-69 | -8.615850e-47 |
| Msa0524680 | Msa1165800 | 0.804149 | 2.480792e-49 | -8.615850e-47 |
| Msa0524680 | Msa1219760 | 0.847966 | 8.275708e-60 | -8.615850e-47 |
| Msa0524680 | Msa1235950 | 0.834302 | 3.242162e-56 | -8.615850e-47 |
| Msa0524680 | Msa1235980 | 0.826569 | 2.524554e-54 | -8.615850e-47 |
| Msa0524680 | Msa1255830 | 0.811175 | 7.982461e-51 | -8.615850e-47 |
| Msa0524680 | Msa1296090 | 0.802070 | 6.678701e-49 | -8.615850e-47 |
| Msa0524680 | Msa1316100 | 0.805217 | 1.484759e-49 | -8.615850e-47 |
| Msa0524680 | Msa1341780 | 0.879368 | 1.319374e-69 | -8.615850e-47 |
| Msa0524680 | Msa1347610 | 0.850373 | 1.771203e-60 | -8.615850e-47 |
| Msa0524680 | Msa1351020 | 0.810036 | 1.407224e-50 | -8.615850e-47 |
| Msa0524680 | Msa1351910 | 0.809933 | 1.481154e-50 | -8.615850e-47 |
| Msa0524680 | Msa1353300 | 0.802482 | 5.494472e-49 | -8.615850e-47 |
| Msa0524680 | Msa1364810 | 0.810512 | 1.110909e-50 | -8.615850e-47 |
| Msa0524680 | Msa1367540 | 0.840388 | 8.962225e-58 | -8.615850e-47 |
| Msa0524680 | Msa1385480 | 0.819974 | 8.758984e-53 | -8.615850e-47 |
| Msa0524680 | Msa1403520 | 0.846217 | 2.495827e-59 | -8.615850e-47 |
| Msa0524680 | Msa1421510 | 0.808807 | 2.583523e-50 | -8.615850e-47 |
| Msa0524680 | Msa1424570 | 0.805860 | 1.088713e-49 | -8.615850e-47 |
| Msa0524680 | Msa1450560 | 0.831308 | 1.796491e-55 | -8.615850e-47 |
| Msa0524680 | Msa1462580 | 0.859828 | 3.157425e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524680 | MtrunA17_Chr3g0138631 | 99.690 | 323 | 1 | 0 | 1 | 323 | 1 | 323 | 0.0 | 644 |
| Msa0524680 | MtrunA17_Chr5g0436791 | 91.641 | 323 | 27 | 0 | 1 | 323 | 1 | 323 | 0.0 | 559 |
| Msa0524680 | MtrunA17_Chr1g0168061 | 100.000 | 81 | 0 | 0 | 243 | 323 | 1 | 81 | 7.70e-49 | 158 |
| Msa0524680 | MtrunA17_Chr7g0222411 | 68.269 | 104 | 32 | 1 | 11 | 113 | 7 | 110 | 7.37e-42 | 143 |
| Msa0524680 | MtrunA17_Chr7g0272291 | 68.539 | 89 | 27 | 1 | 11 | 98 | 7 | 95 | 2.52e-34 | 121 |
| Msa0524680 | MtrunA17_Chr3g0115971 | 54.630 | 108 | 27 | 2 | 63 | 169 | 8 | 94 | 1.73e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524680 | AT2G40010.1 | 84.112 | 321 | 47 | 1 | 1 | 321 | 1 | 317 | 0.0 | 523 |
| Msa0524680 | AT3G09200.1 | 89.493 | 276 | 29 | 0 | 3 | 278 | 2 | 277 | 1.48e-180 | 501 |
| Msa0524680 | AT3G11250.1 | 88.406 | 276 | 32 | 0 | 3 | 278 | 2 | 277 | 1.11e-178 | 497 |
| Msa0524680 | AT3G09200.2 | 78.623 | 276 | 26 | 1 | 3 | 278 | 2 | 244 | 5.26e-150 | 423 |
| Msa0524680 | AT1G25260.1 | 22.685 | 216 | 146 | 4 | 10 | 214 | 16 | 221 | 4.34e-11 | 62.4 |
Find 132 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACTAAGATAGGTATTT+TGG | 0.121345 | 3_4:+78143636 | Msa0524680:five_prime_UTR |
| TCCTCCTTGGCAGCTGCAGC+AGG | 0.147360 | 3_4:-78146180 | None:intergenic |
| CAAACCCAGTGGGCCTAAAA+AGG | 0.215339 | 3_4:+78143748 | Msa0524680:five_prime_UTR |
| ATCTCAGACCTCTTTCTTCC+AGG | 0.252116 | 3_4:+78145548 | Msa0524680:CDS |
| CAGCGTTGACAACAAGGATT+TGG | 0.257235 | 3_4:-78144065 | None:intergenic |
| GCCCCAGCTGCTGCTGCGTC+TGG | 0.268454 | 3_4:+78146150 | Msa0524680:CDS |
| CATGGTCACTTCACTTTCAT+TGG | 0.278087 | 3_4:+78145880 | Msa0524680:CDS |
| CACCAGACGCAGCAGCAGCT+GGG | 0.284716 | 3_4:-78146152 | None:intergenic |
| GTGACTTGTGTTTGCCTCCT+AGG | 0.304690 | 3_4:+78146430 | Msa0524680:three_prime_UTR |
| CCACCAGACGCAGCAGCAGC+TGG | 0.308640 | 3_4:-78146153 | None:intergenic |
| ATCGTAGTTCTGCTTCTTCT+CGG | 0.310851 | 3_4:-78144010 | None:intergenic |
| CACAGTACCCTTGTTAATCT+TGG | 0.311903 | 3_4:-78145654 | None:intergenic |
| TTGTAGCAAAGTTTGCTATT+GGG | 0.333543 | 3_4:+78145852 | Msa0524680:CDS |
| TCAAAACTTCAGAATGGTTT+GGG | 0.337661 | 3_4:-78143617 | None:intergenic |
| GATTAAAGAGAGGAAATTAA+AGG | 0.339368 | 3_4:-78143932 | None:intergenic |
| TTCAAAACTTCAGAATGGTT+TGG | 0.345461 | 3_4:-78143618 | None:intergenic |
| CTTGTAGCAAAGTTTGCTAT+TGG | 0.351992 | 3_4:+78145851 | Msa0524680:CDS |
| TCTTCATCAGACTCTTCTTC+AGG | 0.361468 | 3_4:-78146219 | None:intergenic |
| GAGTTCGGTAGTCAAATTAC+TGG | 0.379800 | 3_4:+78146469 | Msa0524680:three_prime_UTR |
| GCTGCATTGCTTGCCAAGTT+AGG | 0.382522 | 3_4:+78145734 | Msa0524680:CDS |
| TCCTTAACCTTGTCTGCCTC+AGG | 0.389206 | 3_4:-78145998 | None:intergenic |
| GTTGAGAAAAGCATTGTTGC+CGG | 0.397292 | 3_4:-78144205 | None:intergenic |
| GTTCTGCTTCTTCTCGGCTT+TGG | 0.398033 | 3_4:-78144004 | None:intergenic |
| AGCTCCTGCTCGTGTTGGTT+TGG | 0.398892 | 3_4:+78145476 | Msa0524680:CDS |
| CTCCTTGGCAGCTGCAGCAG+GGG | 0.398915 | 3_4:-78146178 | None:intergenic |
| TTCCTTCTTTGCCTCCTCCT+TGG | 0.403009 | 3_4:-78146193 | None:intergenic |
| AAAAGCAAGAACGTTCTTGT+AGG | 0.409408 | 3_4:-78145951 | None:intergenic |
| GGAGGAACAACGACATCAAT+TGG | 0.410263 | 3_4:-78145504 | None:intergenic |
| TGCCCCTGCTGCAGCTGCCA+AGG | 0.415195 | 3_4:+78146176 | Msa0524680:CDS |
| TACCCTTGTTAATCTTGGTT+GGG | 0.415505 | 3_4:-78145649 | None:intergenic |
| CCTCCTTGGCAGCTGCAGCA+GGG | 0.416133 | 3_4:-78146179 | None:intergenic |
| ACAGCTACAGCAAACTTACT+TGG | 0.421114 | 3_4:-78146123 | None:intergenic |
| GACATTGGTTTCGGTCTGTT+TGG | 0.422303 | 3_4:+78146240 | Msa0524680:CDS |
| TCTGATGAAGACATTGGTTT+CGG | 0.427250 | 3_4:+78146231 | Msa0524680:CDS |
| CCAGCTGCTGCTGCGTCTGG+TGG | 0.429030 | 3_4:+78146153 | Msa0524680:CDS |
| GGGTCGAGCCCTGTGTTGCC+TGG | 0.431244 | 3_4:-78145525 | None:intergenic |
| CCTTTCTTAATGAGTTCCAC+AGG | 0.432079 | 3_4:-78145689 | None:intergenic |
| TGCCTCAGGGAAAGAATATT+CGG | 0.435165 | 3_4:-78145984 | None:intergenic |
| TGGTGACTCCGTTGTTCTCA+TGG | 0.440885 | 3_4:+78144134 | Msa0524680:CDS |
| GAGAGAGAGTGAGCGTGAAA+TGG | 0.445704 | 3_4:-78143814 | None:intergenic |
| AGATTTCATGAGATCATACT+TGG | 0.450081 | 3_4:+78146316 | Msa0524680:three_prime_UTR |
| TCAGTGAGGTCAAGAACCTC+AGG | 0.450763 | 3_4:-78145821 | None:intergenic |
| AGAGTGAGCGTGAAATGGTT+GGG | 0.451243 | 3_4:-78143809 | None:intergenic |
| GACCACAAGCCCGTATGAAA+AGG | 0.451799 | 3_4:-78145765 | None:intergenic |
| AGCGTTGACAACAAGGATTT+GGG | 0.451933 | 3_4:-78144064 | None:intergenic |
| GAGAGTGAGCGTGAAATGGT+TGG | 0.454050 | 3_4:-78143810 | None:intergenic |
| AGAAAACTAACGACAAGAAG+AGG | 0.456056 | 3_4:-78144234 | None:intergenic |
| TGCTGCAGCTGCCAAGGAGG+AGG | 0.457641 | 3_4:+78146182 | Msa0524680:CDS |
| GCGTGAAATGGTTGGGAAGC+GGG | 0.460938 | 3_4:-78143802 | None:intergenic |
| CCCTGAGGCAGACAAGGTTA+AGG | 0.463407 | 3_4:+78145997 | Msa0524680:CDS |
| GATCATACTTGGTTCATTCT+CGG | 0.466035 | 3_4:+78146327 | Msa0524680:three_prime_UTR |
| TTTCACTAAAGGTGACTTGA+AGG | 0.469610 | 3_4:+78145120 | Msa0524680:CDS |
| ATTGATGTCGTTGTTCCTCC+AGG | 0.473267 | 3_4:+78145507 | Msa0524680:CDS |
| TCAGCTACAGAACATTCGTC+AGG | 0.474511 | 3_4:+78144104 | Msa0524680:CDS |
| TGCCAAGGAGGAGGCAAAGA+AGG | 0.475094 | 3_4:+78146191 | Msa0524680:CDS |
| TGTAGCAAAGTTTGCTATTG+GGG | 0.476436 | 3_4:+78145853 | Msa0524680:CDS |
| GAGGAGCAGCGGCAAGTGTT+GGG | 0.477710 | 3_4:-78145913 | None:intergenic |
| ATTAAAGAGAGGAAATTAAA+GGG | 0.479325 | 3_4:-78143931 | None:intergenic |
| TGAGGAGCAGCGGCAAGTGT+TGG | 0.489867 | 3_4:-78145914 | None:intergenic |
| TAGTCAAATTACTGGTGATT+CGG | 0.490669 | 3_4:+78146477 | Msa0524680:three_prime_UTR |
| CTTAGTTCAAAACTTCAGAA+TGG | 0.491518 | 3_4:-78143623 | None:intergenic |
| ACCAGACGCAGCAGCAGCTG+GGG | 0.494428 | 3_4:-78146151 | None:intergenic |
| GTTTGCTATTGGGGTTTCCA+TGG | 0.495280 | 3_4:+78145862 | Msa0524680:CDS |
| GTCCTCTCTGTTTATGACAA+TGG | 0.495884 | 3_4:+78145785 | Msa0524680:CDS |
| TGCTTGCCAAGTTAGGCATT+AGG | 0.501788 | 3_4:+78145741 | Msa0524680:CDS |
| CTTGACTGAACTATACGTCT+TGG | 0.501972 | 3_4:+78143908 | Msa0524680:five_prime_UTR |
| AGTCAAAATATAACATGGAA+TGG | 0.503032 | 3_4:-78146372 | None:intergenic |
| GGGTGTATTCATCGATAAGC+TGG | 0.506884 | 3_4:-78144044 | None:intergenic |
| GTACCCTTGTTAATCTTGGT+TGG | 0.507788 | 3_4:-78145650 | None:intergenic |
| GCAACCAAACCAACACGAGC+AGG | 0.521300 | 3_4:-78145480 | None:intergenic |
| CGTATGCACGCTGAGAAAAC+CGG | 0.521724 | 3_4:+78144186 | Msa0524680:CDS |
| AAAGGGCCTAATGCCTAACT+TGG | 0.523198 | 3_4:-78145747 | None:intergenic |
| TTTGGGAGTTAACTCTCAAT+CGG | 0.526599 | 3_4:-78143600 | None:intergenic |
| TTCTTTCCCTGAGGCAGACA+AGG | 0.529015 | 3_4:+78145991 | Msa0524680:CDS |
| CCCTGCTGCAGCTGCCAAGG+AGG | 0.530721 | 3_4:+78146179 | Msa0524680:CDS |
| TGCTTCTTCTCGGCTTTGGT+AGG | 0.531501 | 3_4:-78144000 | None:intergenic |
| ACCACAAGCCCGTATGAAAA+GGG | 0.531757 | 3_4:-78145764 | None:intergenic |
| GTTGGAGCTCCTGCTCGTGT+TGG | 0.532062 | 3_4:+78145471 | Msa0524680:CDS |
| TAGGCATTGACGAACATATG+AGG | 0.532355 | 3_4:-78145932 | None:intergenic |
| AGCGTGAAATGGTTGGGAAG+CGG | 0.536246 | 3_4:-78143803 | None:intergenic |
| TGGAAGAAAGAGGTCTGAGA+TGG | 0.537477 | 3_4:-78145546 | None:intergenic |
| GTGCTGAATCAGGGTAATGT+TGG | 0.549672 | 3_4:+78145091 | Msa0524680:intron |
| TAACGACAAGAAGAGGGATA+AGG | 0.557262 | 3_4:-78144227 | None:intergenic |
| ATTAAGAAAGGAGACAAGGT+TGG | 0.560082 | 3_4:+78145701 | Msa0524680:CDS |
| CCTGTGGAACTCATTAAGAA+AGG | 0.562398 | 3_4:+78145689 | Msa0524680:CDS |
| GTTGTTCCTCCAGGCAACAC+AGG | 0.564540 | 3_4:+78145516 | Msa0524680:CDS |
| CATCCCAACCAAGATTAACA+AGG | 0.566179 | 3_4:+78145646 | Msa0524680:CDS |
| CAATAGCAAACTTTGCTACA+AGG | 0.567134 | 3_4:-78145850 | None:intergenic |
| GAAGAGTCTGATGAAGACAT+TGG | 0.571608 | 3_4:+78146225 | Msa0524680:CDS |
| CTTTCTTAATGAGTTCCACA+GGG | 0.574196 | 3_4:-78145688 | None:intergenic |
| CGTTGTCAGCGTTGACAACA+AGG | 0.575399 | 3_4:-78144071 | None:intergenic |
| ATAACAAACCTGGAAGAAAG+AGG | 0.579894 | 3_4:-78145556 | None:intergenic |
| GGTGACTCCGTTGTTCTCAT+GGG | 0.580224 | 3_4:+78144135 | Msa0524680:CDS |
| ACGAACAGATCGCTTCATCA+TGG | 0.583200 | 3_4:-78144166 | None:intergenic |
| CAAATTAAAAGTTAAAACCT+AGG | 0.589132 | 3_4:-78146447 | None:intergenic |
| CCTTAACCTTGTCTGCCTCA+GGG | 0.589860 | 3_4:-78145997 | None:intergenic |
| GGAAGAAAGAGGTCTGAGAT+GGG | 0.590223 | 3_4:-78145545 | None:intergenic |
| CAGCTACAGCAAACTTACTT+GGG | 0.593694 | 3_4:-78146122 | None:intergenic |
| GGCAAGTGTTGGGTAAGAGA+TGG | 0.602128 | 3_4:-78145903 | None:intergenic |
| GAAAACTAACGACAAGAAGA+GGG | 0.606607 | 3_4:-78144233 | None:intergenic |
| TTTGGAAGGAACGAAACGAA+GGG | 0.608382 | 3_4:-78143854 | None:intergenic |
| GGGAGTTAACTCTCAATCGG+TGG | 0.609159 | 3_4:-78143597 | None:intergenic |
| AAAAGAGCAGGTTAAAGTGA+CGG | 0.611034 | 3_4:+78143875 | Msa0524680:five_prime_UTR |
| TTGTTCCTCCAGGCAACACA+GGG | 0.611479 | 3_4:+78145517 | Msa0524680:CDS |
| CAAGATTAACAAGGGTACTG+TGG | 0.615021 | 3_4:+78145655 | Msa0524680:CDS |
| AACAACAACAAAATCAACAA+TGG | 0.626124 | 3_4:+78143969 | Msa0524680:exon |
| TGAAGAAGTTGCTAAATACA+AGG | 0.626443 | 3_4:+78145150 | Msa0524680:CDS |
| GACGAACATATGAGGAGCAG+CGG | 0.628131 | 3_4:-78145924 | None:intergenic |
| CAGCTACAGAACATTCGTCA+GGG | 0.630095 | 3_4:+78144105 | Msa0524680:CDS |
| GTTGTCAACGCTGACAACGT+TGG | 0.630374 | 3_4:+78144075 | Msa0524680:CDS |
| TGGTTCAGTGTTTAGCCCTG+AGG | 0.633517 | 3_4:+78145805 | Msa0524680:CDS |
| ATTAAAAGTTAAAACCTAGG+AGG | 0.636784 | 3_4:-78146444 | None:intergenic |
| GGGGCCGTGAGCAAAAGAAG+GGG | 0.640653 | 3_4:+78143669 | Msa0524680:five_prime_UTR |
| GATAAAGTCAAAATATAACA+TGG | 0.649347 | 3_4:-78146377 | None:intergenic |
| CAATGAAAGTGAAGTGACCA+TGG | 0.657879 | 3_4:-78145879 | None:intergenic |
| CAAGGTTAAGGAGTACCTGA+AGG | 0.661074 | 3_4:+78146009 | Msa0524680:CDS |
| CAAGACGTATAGTTCAGTCA+AGG | 0.663107 | 3_4:-78143907 | None:intergenic |
| GTTCTTTCCCATGAGAACAA+CGG | 0.664224 | 3_4:-78144142 | None:intergenic |
| ATCCCAACCAAGATTAACAA+GGG | 0.664581 | 3_4:+78145647 | Msa0524680:CDS |
| AACATTCGTCAGGGTCTACG+TGG | 0.667957 | 3_4:+78144114 | Msa0524680:CDS |
| TGTGGAAATTATTACCCCTG+TGG | 0.672323 | 3_4:+78145673 | Msa0524680:CDS |
| ACTCATTAAGAAAGGAGACA+AGG | 0.674494 | 3_4:+78145697 | Msa0524680:CDS |
| TCGAGCCCTGTGTTGCCTGG+AGG | 0.687408 | 3_4:-78145522 | None:intergenic |
| TACCGAATATTCTTTCCCTG+AGG | 0.697745 | 3_4:+78145982 | Msa0524680:CDS |
| CAGTGAGGTCAAGAACCTCA+GGG | 0.701495 | 3_4:-78145820 | None:intergenic |
| TGAGGTTCTTGACCTCACTG+AGG | 0.710337 | 3_4:+78145823 | Msa0524680:CDS |
| AAACACTTAGCAAACCCAGT+GGG | 0.712309 | 3_4:+78143738 | Msa0524680:five_prime_UTR |
| AACCATTGTCATAAACAGAG+AGG | 0.717707 | 3_4:-78145787 | None:intergenic |
| GACGTATAGTTCAGTCAAGG+CGG | 0.717823 | 3_4:-78143904 | None:intergenic |
| TTTCTTAATGAGTTCCACAG+GGG | 0.725748 | 3_4:-78145687 | None:intergenic |
| CTACAAGGTCATCCTCAGTG+AGG | 0.743500 | 3_4:-78145835 | None:intergenic |
| AAAACACTTAGCAAACCCAG+TGG | 0.777128 | 3_4:+78143737 | Msa0524680:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAAAAAAAAAAAAAA+AGG | + | chr3_4:78146538-78146557 | Msa0524680:three_prime_UTR | 0.0% |
| !!! | AGTCTAACTTTATTTATAAT+GGG | + | chr3_4:78144454-78144473 | Msa0524680:intron | 15.0% |
| !! | TATTATTTATAAGCTTATCA+AGG | - | chr3_4:78144599-78144618 | None:intergenic | 15.0% |
| !! | TAAGCTTATAAATAATACAT+AGG | + | chr3_4:78144602-78144621 | Msa0524680:intron | 15.0% |
| !! | AAGCTTATAAATAATACATA+GGG | + | chr3_4:78144603-78144622 | Msa0524680:intron | 15.0% |
| !! | AATCAAAGAATAAGAAAAAT+GGG | - | chr3_4:78146086-78146105 | None:intergenic | 15.0% |
| !! | AAATCAAAGAATAAGAAAAA+TGG | - | chr3_4:78146087-78146106 | None:intergenic | 15.0% |
| !!! | TTTAACTTTTAATTTGAGTT+CGG | + | chr3_4:78146454-78146473 | Msa0524680:three_prime_UTR | 15.0% |
| !! | ATTAAAGAGAGGAAATTAAA+GGG | - | chr3_4:78143934-78143953 | None:intergenic | 20.0% |
| !!! | CAGTCTAACTTTATTTATAA+TGG | + | chr3_4:78144453-78144472 | Msa0524680:intron | 20.0% |
| !!! | GTCTAACTTTATTTATAATG+GGG | + | chr3_4:78144455-78144474 | Msa0524680:intron | 20.0% |
| !! | TATGCAAATAAATAAGCTTA+TGG | - | chr3_4:78144846-78144865 | None:intergenic | 20.0% |
| !! | TAATTGTCTTAAATCTGAAT+AGG | + | chr3_4:78145449-78145468 | Msa0524680:intron | 20.0% |
| !! | GATAAAGTCAAAATATAACA+TGG | - | chr3_4:78146380-78146399 | None:intergenic | 20.0% |
| !!! | TTCTCGTTTTAAATTCTATA+TGG | + | chr3_4:78146405-78146424 | Msa0524680:three_prime_UTR | 20.0% |
| !! | CAAATTAAAAGTTAAAACCT+AGG | - | chr3_4:78146450-78146469 | None:intergenic | 20.0% |
| !! | TTGAACTAAGATAGGTATTT+TGG | + | chr3_4:78143636-78143655 | Msa0524680:five_prime_UTR | 25.0% |
| !! | TGAACTAAGATAGGTATTTT+GGG | + | chr3_4:78143637-78143656 | Msa0524680:five_prime_UTR | 25.0% |
| ! | GATTAAAGAGAGGAAATTAA+AGG | - | chr3_4:78143935-78143954 | None:intergenic | 25.0% |
| !!! | TGATTTTGTTGTTGTTGATA+GGG | - | chr3_4:78143965-78143984 | None:intergenic | 25.0% |
| !!! | TTGATTTTGTTGTTGTTGAT+AGG | - | chr3_4:78143966-78143985 | None:intergenic | 25.0% |
| ! | AACAACAACAAAATCAACAA+TGG | + | chr3_4:78143969-78143988 | Msa0524680:exon | 25.0% |
| !! | TTTAGTGATTTTGTGTGATT+TGG | + | chr3_4:78144309-78144328 | Msa0524680:intron | 25.0% |
| !!! | TTCTGTTTTTTGTTACGTAT+AGG | + | chr3_4:78144345-78144364 | Msa0524680:intron | 25.0% |
| ! | TCTTTATGTTAATTCACAAG+TGG | + | chr3_4:78144531-78144550 | Msa0524680:intron | 25.0% |
| ! | CTTTATGTTAATTCACAAGT+GGG | + | chr3_4:78144532-78144551 | Msa0524680:intron | 25.0% |
| ! | AATTACTGCACTATATTATG+AGG | + | chr3_4:78145032-78145051 | Msa0524680:intron | 25.0% |
| ! | ATATGTTATGTTGTTAAGCA+TGG | + | chr3_4:78145197-78145216 | Msa0524680:intron | 25.0% |
| ! | ATTTACAGAAATTGTAACGA+GGG | - | chr3_4:78145343-78145362 | None:intergenic | 25.0% |
| ! | TATTTACAGAAATTGTAACG+AGG | - | chr3_4:78145344-78145363 | None:intergenic | 25.0% |
| ! | TTAAAAGAAGATAACAAACC+TGG | - | chr3_4:78145569-78145588 | None:intergenic | 25.0% |
| ! | TTATGTTTATTCTCCACTTT+AGG | + | chr3_4:78145616-78145635 | Msa0524680:intron | 25.0% |
| !!! | ATAAGAAAAATGGGAGTATT+GGG | - | chr3_4:78146077-78146096 | None:intergenic | 25.0% |
| !! | AATAAGAAAAATGGGAGTAT+TGG | - | chr3_4:78146078-78146097 | None:intergenic | 25.0% |
| !!! | TTCTTTAGTTTTGCTATTAG+TGG | + | chr3_4:78146274-78146293 | Msa0524680:three_prime_UTR | 25.0% |
| ! | AGTCAAAATATAACATGGAA+TGG | - | chr3_4:78146375-78146394 | None:intergenic | 25.0% |
| ! | ATTAAAAGTTAAAACCTAGG+AGG | - | chr3_4:78146447-78146466 | None:intergenic | 25.0% |
| TCAAAACTTCAGAATGGTTT+GGG | - | chr3_4:78143620-78143639 | None:intergenic | 30.0% | |
| TTCAAAACTTCAGAATGGTT+TGG | - | chr3_4:78143621-78143640 | None:intergenic | 30.0% | |
| CTTAGTTCAAAACTTCAGAA+TGG | - | chr3_4:78143626-78143645 | None:intergenic | 30.0% | |
| !!! | CTGAAGTTTTGAACTAAGAT+AGG | + | chr3_4:78143628-78143647 | Msa0524680:five_prime_UTR | 30.0% |
| ! | GAACTAAGATAGGTATTTTG+GGG | + | chr3_4:78143638-78143657 | Msa0524680:five_prime_UTR | 30.0% |
| ! | GGCGCAAAGATTTTATATTA+GGG | - | chr3_4:78143784-78143803 | None:intergenic | 30.0% |
| TTCGCTGTTCGATTTAATAA+TGG | + | chr3_4:78144276-78144295 | Msa0524680:intron | 30.0% | |
| AATAATACATAGGGTCTGTT+TGG | + | chr3_4:78144612-78144631 | Msa0524680:intron | 30.0% | |
| TAGTGAGAACTTGTGAATTA+AGG | + | chr3_4:78144755-78144774 | Msa0524680:intron | 30.0% | |
| CAAAATAAGCTCAATCCAAA+CGG | + | chr3_4:78144818-78144837 | Msa0524680:intron | 30.0% | |
| AAAATAAGCTCAATCCAAAC+GGG | + | chr3_4:78144819-78144838 | Msa0524680:intron | 30.0% | |
| ! | TATTGTTGTTAACTCTTGTG+AGG | + | chr3_4:78145064-78145083 | Msa0524680:intron | 30.0% |
| !!! | GTTGGTTTGATTTTCACTAA+AGG | + | chr3_4:78145109-78145128 | Msa0524680:CDS | 30.0% |
| TGAAGAAGTTGCTAAATACA+AGG | + | chr3_4:78145150-78145169 | Msa0524680:CDS | 30.0% | |
| ACTAGAGGTGACAAAAAAAA+TGG | - | chr3_4:78145269-78145288 | None:intergenic | 30.0% | |
| ! | AATACTTTTCGTTTGATGCA+TGG | + | chr3_4:78145363-78145382 | Msa0524680:intron | 30.0% |
| CATTCAACAAACAAAACAAG+TGG | - | chr3_4:78145416-78145435 | None:intergenic | 30.0% | |
| TGTCTTAAATCTGAATAGGT+TGG | + | chr3_4:78145453-78145472 | Msa0524680:intron | 30.0% | |
| !! | TTGTAGCAAAGTTTGCTATT+GGG | + | chr3_4:78145852-78145871 | Msa0524680:CDS | 30.0% |
| AGATTTCATGAGATCATACT+TGG | + | chr3_4:78146316-78146335 | Msa0524680:three_prime_UTR | 30.0% | |
| TAGTCAAATTACTGGTGATT+CGG | + | chr3_4:78146477-78146496 | Msa0524680:three_prime_UTR | 30.0% | |
| TTTGGGAGTTAACTCTCAAT+CGG | - | chr3_4:78143603-78143622 | None:intergenic | 35.0% | |
| ! | GGGCGCAAAGATTTTATATT+AGG | - | chr3_4:78143785-78143804 | None:intergenic | 35.0% |
| ! | TTTAACCTGCTCTTTTTGGA+AGG | - | chr3_4:78143871-78143890 | None:intergenic | 35.0% |
| ! | TCACTTTAACCTGCTCTTTT+TGG | - | chr3_4:78143875-78143894 | None:intergenic | 35.0% |
| AAAAGAGCAGGTTAAAGTGA+CGG | + | chr3_4:78143875-78143894 | Msa0524680:five_prime_UTR | 35.0% | |
| !!! | GGGTTTTGAAGATTAAAGAG+AGG | - | chr3_4:78143945-78143964 | None:intergenic | 35.0% |
| GAAAACTAACGACAAGAAGA+GGG | - | chr3_4:78144236-78144255 | None:intergenic | 35.0% | |
| AGAAAACTAACGACAAGAAG+AGG | - | chr3_4:78144237-78144256 | None:intergenic | 35.0% | |
| AAATAAGCTCAATCCAAACG+GGG | + | chr3_4:78144820-78144839 | Msa0524680:intron | 35.0% | |
| GCAATAACTGTCTCTTTGTT+TGG | - | chr3_4:78144948-78144967 | None:intergenic | 35.0% | |
| TTTCACTAAAGGTGACTTGA+AGG | + | chr3_4:78145120-78145139 | Msa0524680:CDS | 35.0% | |
| !!! | TTTTTTTGTCACCTCTAGTG+AGG | + | chr3_4:78145270-78145289 | Msa0524680:intron | 35.0% |
| ATAACAAACCTGGAAGAAAG+AGG | - | chr3_4:78145559-78145578 | None:intergenic | 35.0% | |
| ATCCCAACCAAGATTAACAA+GGG | + | chr3_4:78145647-78145666 | Msa0524680:CDS | 35.0% | |
| TACCCTTGTTAATCTTGGTT+GGG | - | chr3_4:78145652-78145671 | None:intergenic | 35.0% | |
| TTTCTTAATGAGTTCCACAG+GGG | - | chr3_4:78145690-78145709 | None:intergenic | 35.0% | |
| CTTTCTTAATGAGTTCCACA+GGG | - | chr3_4:78145691-78145710 | None:intergenic | 35.0% | |
| ACTCATTAAGAAAGGAGACA+AGG | + | chr3_4:78145697-78145716 | Msa0524680:CDS | 35.0% | |
| ATTAAGAAAGGAGACAAGGT+TGG | + | chr3_4:78145701-78145720 | Msa0524680:CDS | 35.0% | |
| AACCATTGTCATAAACAGAG+AGG | - | chr3_4:78145790-78145809 | None:intergenic | 35.0% | |
| CAATAGCAAACTTTGCTACA+AGG | - | chr3_4:78145853-78145872 | None:intergenic | 35.0% | |
| !! | CTTGTAGCAAAGTTTGCTAT+TGG | + | chr3_4:78145851-78145870 | Msa0524680:CDS | 35.0% |
| !! | TGTAGCAAAGTTTGCTATTG+GGG | + | chr3_4:78145853-78145872 | Msa0524680:CDS | 35.0% |
| AAAAGCAAGAACGTTCTTGT+AGG | - | chr3_4:78145954-78145973 | None:intergenic | 35.0% | |
| ATGTTGAAGTCAATACCTTC+AGG | - | chr3_4:78146027-78146046 | None:intergenic | 35.0% | |
| !! | CTTTGATTTTTGTTCACTGC+AGG | + | chr3_4:78146098-78146117 | Msa0524680:intron | 35.0% |
| !! | TCTGATGAAGACATTGGTTT+CGG | + | chr3_4:78146231-78146250 | Msa0524680:CDS | 35.0% |
| GATCATACTTGGTTCATTCT+CGG | + | chr3_4:78146327-78146346 | Msa0524680:three_prime_UTR | 35.0% | |
| !! | TAGGTATTTTGGGGAGTTTG+AGG | + | chr3_4:78143647-78143666 | Msa0524680:five_prime_UTR | 40.0% |
| !! | AGGTATTTTGGGGAGTTTGA+GGG | + | chr3_4:78143648-78143667 | Msa0524680:five_prime_UTR | 40.0% |
| AAAACACTTAGCAAACCCAG+TGG | + | chr3_4:78143737-78143756 | Msa0524680:five_prime_UTR | 40.0% | |
| AAACACTTAGCAAACCCAGT+GGG | + | chr3_4:78143738-78143757 | Msa0524680:five_prime_UTR | 40.0% | |
| !!! | AAACGAAGGGTTTTAGGGTT+CGG | - | chr3_4:78143844-78143863 | None:intergenic | 40.0% |
| ! | GAACGAAACGAAGGGTTTTA+GGG | - | chr3_4:78143849-78143868 | None:intergenic | 40.0% |
| TTTGGAAGGAACGAAACGAA+GGG | - | chr3_4:78143857-78143876 | None:intergenic | 40.0% | |
| !! | TTTTGGAAGGAACGAAACGA+AGG | - | chr3_4:78143858-78143877 | None:intergenic | 40.0% |
| CAAGACGTATAGTTCAGTCA+AGG | - | chr3_4:78143910-78143929 | None:intergenic | 40.0% | |
| CTTGACTGAACTATACGTCT+TGG | + | chr3_4:78143908-78143927 | Msa0524680:five_prime_UTR | 40.0% | |
| ! | ATCGTAGTTCTGCTTCTTCT+CGG | - | chr3_4:78144013-78144032 | None:intergenic | 40.0% |
| !! | AGCGTTGACAACAAGGATTT+GGG | - | chr3_4:78144067-78144086 | None:intergenic | 40.0% |
| GTTCTTTCCCATGAGAACAA+CGG | - | chr3_4:78144145-78144164 | None:intergenic | 40.0% | |
| !! | GTTGAGAAAAGCATTGTTGC+CGG | - | chr3_4:78144208-78144227 | None:intergenic | 40.0% |
| TAACGACAAGAAGAGGGATA+AGG | - | chr3_4:78144230-78144249 | None:intergenic | 40.0% | |
| ! | ATAATGGGGCGTGTTTGAAT+TGG | + | chr3_4:78144469-78144488 | Msa0524680:intron | 40.0% |
| !! | GTCTCTTTGTTTGGTGCTTA+TGG | - | chr3_4:78144939-78144958 | None:intergenic | 40.0% |
| TGAGGATTTGTGCTGAATCA+GGG | + | chr3_4:78145082-78145101 | Msa0524680:intron | 40.0% | |
| CATCCCAACCAAGATTAACA+AGG | + | chr3_4:78145646-78145665 | Msa0524680:CDS | 40.0% | |
| GTACCCTTGTTAATCTTGGT+TGG | - | chr3_4:78145653-78145672 | None:intergenic | 40.0% | |
| CACAGTACCCTTGTTAATCT+TGG | - | chr3_4:78145657-78145676 | None:intergenic | 40.0% | |
| !! | CAAGATTAACAAGGGTACTG+TGG | + | chr3_4:78145655-78145674 | Msa0524680:CDS | 40.0% |
| TGTGGAAATTATTACCCCTG+TGG | + | chr3_4:78145673-78145692 | Msa0524680:CDS | 40.0% | |
| CCTTTCTTAATGAGTTCCAC+AGG | - | chr3_4:78145692-78145711 | None:intergenic | 40.0% | |
| CCTGTGGAACTCATTAAGAA+AGG | + | chr3_4:78145689-78145708 | Msa0524680:CDS | 40.0% | |
| GTCCTCTCTGTTTATGACAA+TGG | + | chr3_4:78145785-78145804 | Msa0524680:CDS | 40.0% | |
| CAATGAAAGTGAAGTGACCA+TGG | - | chr3_4:78145882-78145901 | None:intergenic | 40.0% | |
| CATGGTCACTTCACTTTCAT+TGG | + | chr3_4:78145880-78145899 | Msa0524680:CDS | 40.0% | |
| !! | TAGGCATTGACGAACATATG+AGG | - | chr3_4:78145935-78145954 | None:intergenic | 40.0% |
| TACCGAATATTCTTTCCCTG+AGG | + | chr3_4:78145982-78146001 | Msa0524680:CDS | 40.0% | |
| TGCCTCAGGGAAAGAATATT+CGG | - | chr3_4:78145987-78146006 | None:intergenic | 40.0% | |
| CAGCTACAGCAAACTTACTT+GGG | - | chr3_4:78146125-78146144 | None:intergenic | 40.0% | |
| ACAGCTACAGCAAACTTACT+TGG | - | chr3_4:78146126-78146145 | None:intergenic | 40.0% | |
| TCTTCATCAGACTCTTCTTC+AGG | - | chr3_4:78146222-78146241 | None:intergenic | 40.0% | |
| GAAGAGTCTGATGAAGACAT+TGG | + | chr3_4:78146225-78146244 | Msa0524680:CDS | 40.0% | |
| GAGTTCGGTAGTCAAATTAC+TGG | + | chr3_4:78146469-78146488 | Msa0524680:three_prime_UTR | 40.0% | |
| !! | GGTATTTTGGGGAGTTTGAG+GGG | + | chr3_4:78143649-78143668 | Msa0524680:five_prime_UTR | 45.0% |
| !! | GTATTTTGGGGAGTTTGAGG+GGG | + | chr3_4:78143650-78143669 | Msa0524680:five_prime_UTR | 45.0% |
| ! | TAAGCCCCTTCTTTTGCTCA+CGG | - | chr3_4:78143676-78143695 | None:intergenic | 45.0% |
| AAACCCAGTGGGCCTAAAAA+GGG | + | chr3_4:78143749-78143768 | Msa0524680:five_prime_UTR | 45.0% | |
| ! | GGGTTTTCTCTGCCCTTTTT+AGG | - | chr3_4:78143764-78143783 | None:intergenic | 45.0% |
| AGAGTGAGCGTGAAATGGTT+GGG | - | chr3_4:78143812-78143831 | None:intergenic | 45.0% | |
| ! | GGAACGAAACGAAGGGTTTT+AGG | - | chr3_4:78143850-78143869 | None:intergenic | 45.0% |
| TCGTTCCTTCCAAAAAGAGC+AGG | + | chr3_4:78143863-78143882 | Msa0524680:five_prime_UTR | 45.0% | |
| GACGTATAGTTCAGTCAAGG+CGG | - | chr3_4:78143907-78143926 | None:intergenic | 45.0% | |
| GGGTGTATTCATCGATAAGC+TGG | - | chr3_4:78144047-78144066 | None:intergenic | 45.0% | |
| !! | CAGCGTTGACAACAAGGATT+TGG | - | chr3_4:78144068-78144087 | None:intergenic | 45.0% |
| TCAGCTACAGAACATTCGTC+AGG | + | chr3_4:78144104-78144123 | Msa0524680:CDS | 45.0% | |
| CAGCTACAGAACATTCGTCA+GGG | + | chr3_4:78144105-78144124 | Msa0524680:CDS | 45.0% | |
| ACGAACAGATCGCTTCATCA+TGG | - | chr3_4:78144169-78144188 | None:intergenic | 45.0% | |
| AATAAGCTTATGGCCCCGTT+TGG | - | chr3_4:78144836-78144855 | None:intergenic | 45.0% | |
| GTGAGGATTTGTGCTGAATC+AGG | + | chr3_4:78145081-78145100 | Msa0524680:intron | 45.0% | |
| GTGCTGAATCAGGGTAATGT+TGG | + | chr3_4:78145091-78145110 | Msa0524680:intron | 45.0% | |
| GGAGGAACAACGACATCAAT+TGG | - | chr3_4:78145507-78145526 | None:intergenic | 45.0% | |
| ATTGATGTCGTTGTTCCTCC+AGG | + | chr3_4:78145507-78145526 | Msa0524680:CDS | 45.0% | |
| ! | GGAAGAAAGAGGTCTGAGAT+GGG | - | chr3_4:78145548-78145567 | None:intergenic | 45.0% |
| TGGAAGAAAGAGGTCTGAGA+TGG | - | chr3_4:78145549-78145568 | None:intergenic | 45.0% | |
| ATCTCAGACCTCTTTCTTCC+AGG | + | chr3_4:78145548-78145567 | Msa0524680:CDS | 45.0% | |
| TGCTTGCCAAGTTAGGCATT+AGG | + | chr3_4:78145741-78145760 | Msa0524680:CDS | 45.0% | |
| AAAGGGCCTAATGCCTAACT+TGG | - | chr3_4:78145750-78145769 | None:intergenic | 45.0% | |
| ! | GGCATTAGGCCCTTTTCATA+CGG | + | chr3_4:78145755-78145774 | Msa0524680:CDS | 45.0% |
| ! | GCATTAGGCCCTTTTCATAC+GGG | + | chr3_4:78145756-78145775 | Msa0524680:CDS | 45.0% |
| ACCACAAGCCCGTATGAAAA+GGG | - | chr3_4:78145767-78145786 | None:intergenic | 45.0% | |
| !! | GTTTGCTATTGGGGTTTCCA+TGG | + | chr3_4:78145862-78145881 | Msa0524680:CDS | 45.0% |
| !! | CAAGGTTAAGGAGTACCTGA+AGG | + | chr3_4:78146009-78146028 | Msa0524680:CDS | 45.0% |
| !! | GACATTGGTTTCGGTCTGTT+TGG | + | chr3_4:78146240-78146259 | Msa0524680:CDS | 45.0% |
| !! | AACTTATAAATAATAAATAA+AGG | - | chr3_4:78144687-78144706 | None:intergenic | 5.0% |
| GGGAGTTAACTCTCAATCGG+TGG | - | chr3_4:78143600-78143619 | None:intergenic | 50.0% | |
| CAAACCCAGTGGGCCTAAAA+AGG | + | chr3_4:78143748-78143767 | Msa0524680:five_prime_UTR | 50.0% | |
| AGCGTGAAATGGTTGGGAAG+CGG | - | chr3_4:78143806-78143825 | None:intergenic | 50.0% | |
| GAGAGTGAGCGTGAAATGGT+TGG | - | chr3_4:78143813-78143832 | None:intergenic | 50.0% | |
| GAGAGAGAGTGAGCGTGAAA+TGG | - | chr3_4:78143817-78143836 | None:intergenic | 50.0% | |
| ! | TGCTTCTTCTCGGCTTTGGT+AGG | - | chr3_4:78144003-78144022 | None:intergenic | 50.0% |
| GTTCTGCTTCTTCTCGGCTT+TGG | - | chr3_4:78144007-78144026 | None:intergenic | 50.0% | |
| !! | CGTTGTCAGCGTTGACAACA+AGG | - | chr3_4:78144074-78144093 | None:intergenic | 50.0% |
| GTTGTCAACGCTGACAACGT+TGG | + | chr3_4:78144075-78144094 | Msa0524680:CDS | 50.0% | |
| AACATTCGTCAGGGTCTACG+TGG | + | chr3_4:78144114-78144133 | Msa0524680:CDS | 50.0% | |
| TGGTGACTCCGTTGTTCTCA+TGG | + | chr3_4:78144134-78144153 | Msa0524680:CDS | 50.0% | |
| GGTGACTCCGTTGTTCTCAT+GGG | + | chr3_4:78144135-78144154 | Msa0524680:CDS | 50.0% | |
| CGTATGCACGCTGAGAAAAC+CGG | + | chr3_4:78144186-78144205 | Msa0524680:CDS | 50.0% | |
| !! | TCACCTCTAGTGAGGTACTG+TGG | + | chr3_4:78145278-78145297 | Msa0524680:intron | 50.0% |
| CAACCACAGTACCTCACTAG+AGG | - | chr3_4:78145284-78145303 | None:intergenic | 50.0% | |
| GCATGGCAATTGCAGCAATG+TGG | + | chr3_4:78145380-78145399 | Msa0524680:intron | 50.0% | |
| TTGTTCCTCCAGGCAACACA+GGG | + | chr3_4:78145517-78145536 | Msa0524680:CDS | 50.0% | |
| GGGATGTTGAGCACCTAAAG+TGG | - | chr3_4:78145632-78145651 | None:intergenic | 50.0% | |
| GCTGCATTGCTTGCCAAGTT+AGG | + | chr3_4:78145734-78145753 | Msa0524680:CDS | 50.0% | |
| GACCACAAGCCCGTATGAAA+AGG | - | chr3_4:78145768-78145787 | None:intergenic | 50.0% | |
| TGGTTCAGTGTTTAGCCCTG+AGG | + | chr3_4:78145805-78145824 | Msa0524680:CDS | 50.0% | |
| CAGTGAGGTCAAGAACCTCA+GGG | - | chr3_4:78145823-78145842 | None:intergenic | 50.0% | |
| TCAGTGAGGTCAAGAACCTC+AGG | - | chr3_4:78145824-78145843 | None:intergenic | 50.0% | |
| TGAGGTTCTTGACCTCACTG+AGG | + | chr3_4:78145823-78145842 | Msa0524680:CDS | 50.0% | |
| CTACAAGGTCATCCTCAGTG+AGG | - | chr3_4:78145838-78145857 | None:intergenic | 50.0% | |
| !! | GGCAAGTGTTGGGTAAGAGA+TGG | - | chr3_4:78145906-78145925 | None:intergenic | 50.0% |
| GACGAACATATGAGGAGCAG+CGG | - | chr3_4:78145927-78145946 | None:intergenic | 50.0% | |
| TTCTTTCCCTGAGGCAGACA+AGG | + | chr3_4:78145991-78146010 | Msa0524680:CDS | 50.0% | |
| CCTTAACCTTGTCTGCCTCA+GGG | - | chr3_4:78146000-78146019 | None:intergenic | 50.0% | |
| TCCTTAACCTTGTCTGCCTC+AGG | - | chr3_4:78146001-78146020 | None:intergenic | 50.0% | |
| TTCCTTCTTTGCCTCCTCCT+TGG | - | chr3_4:78146196-78146215 | None:intergenic | 50.0% | |
| ! | GTGACTTGTGTTTGCCTCCT+AGG | + | chr3_4:78146430-78146449 | Msa0524680:three_prime_UTR | 50.0% |
| !! | CTGCCCTTTTTAGGCCCACT+GGG | - | chr3_4:78143755-78143774 | None:intergenic | 55.0% |
| !! | TCTGCCCTTTTTAGGCCCAC+TGG | - | chr3_4:78143756-78143775 | None:intergenic | 55.0% |
| GCGTGAAATGGTTGGGAAGC+GGG | - | chr3_4:78143805-78143824 | None:intergenic | 55.0% | |
| !!! | CGAAGGGTTTTAGGGTTCGG+TGG | - | chr3_4:78143841-78143860 | None:intergenic | 55.0% |
| CTGCGTACGGGCGTTAGAAT+TGG | - | chr3_4:78144897-78144916 | None:intergenic | 55.0% | |
| AAGCGCGTACTCACTGCGTA+CGG | - | chr3_4:78144910-78144929 | None:intergenic | 55.0% | |
| !! | AGCTCCTGCTCGTGTTGGTT+TGG | + | chr3_4:78145476-78145495 | Msa0524680:CDS | 55.0% |
| GCAACCAAACCAACACGAGC+AGG | - | chr3_4:78145483-78145502 | None:intergenic | 55.0% | |
| GTTGTTCCTCCAGGCAACAC+AGG | + | chr3_4:78145516-78145535 | Msa0524680:CDS | 55.0% | |
| ! | GCCCTTTTCATACGGGCTTG+TGG | + | chr3_4:78145763-78145782 | Msa0524680:CDS | 55.0% |
| CCCTGAGGCAGACAAGGTTA+AGG | + | chr3_4:78145997-78146016 | Msa0524680:CDS | 55.0% | |
| TGCCAAGGAGGAGGCAAAGA+AGG | + | chr3_4:78146191-78146210 | Msa0524680:CDS | 55.0% | |
| AGGGGGCCGTGAGCAAAAGA+AGG | + | chr3_4:78143667-78143686 | Msa0524680:five_prime_UTR | 60.0% | |
| GGGGGCCGTGAGCAAAAGAA+GGG | + | chr3_4:78143668-78143687 | Msa0524680:five_prime_UTR | 60.0% | |
| GGGGCCGTGAGCAAAAGAAG+GGG | + | chr3_4:78143669-78143688 | Msa0524680:five_prime_UTR | 60.0% | |
| AGCGCGTACTCACTGCGTAC+GGG | - | chr3_4:78144909-78144928 | None:intergenic | 60.0% | |
| GCAGTGAGTACGCGCTTGTG+TGG | + | chr3_4:78144913-78144932 | Msa0524680:intron | 60.0% | |
| GTTGGAGCTCCTGCTCGTGT+TGG | + | chr3_4:78145471-78145490 | Msa0524680:CDS | 60.0% | |
| GAGGAGCAGCGGCAAGTGTT+GGG | - | chr3_4:78145916-78145935 | None:intergenic | 60.0% | |
| TGAGGAGCAGCGGCAAGTGT+TGG | - | chr3_4:78145917-78145936 | None:intergenic | 60.0% | |
| TCGAGCCCTGTGTTGCCTGG+AGG | - | chr3_4:78145525-78145544 | None:intergenic | 65.0% | |
| ACCAGACGCAGCAGCAGCTG+GGG | - | chr3_4:78146154-78146173 | None:intergenic | 65.0% | |
| CACCAGACGCAGCAGCAGCT+GGG | - | chr3_4:78146155-78146174 | None:intergenic | 65.0% | |
| CTCCTTGGCAGCTGCAGCAG+GGG | - | chr3_4:78146181-78146200 | None:intergenic | 65.0% | |
| CCTCCTTGGCAGCTGCAGCA+GGG | - | chr3_4:78146182-78146201 | None:intergenic | 65.0% | |
| TCCTCCTTGGCAGCTGCAGC+AGG | - | chr3_4:78146183-78146202 | None:intergenic | 65.0% | |
| TGCTGCAGCTGCCAAGGAGG+AGG | + | chr3_4:78146182-78146201 | Msa0524680:CDS | 65.0% | |
| GGGTCGAGCCCTGTGTTGCC+TGG | - | chr3_4:78145528-78145547 | None:intergenic | 70.0% | |
| CCACCAGACGCAGCAGCAGC+TGG | - | chr3_4:78146156-78146175 | None:intergenic | 70.0% | |
| CCAGCTGCTGCTGCGTCTGG+TGG | + | chr3_4:78146153-78146172 | Msa0524680:CDS | 70.0% | |
| TGCCCCTGCTGCAGCTGCCA+AGG | + | chr3_4:78146176-78146195 | Msa0524680:CDS | 70.0% | |
| CCCTGCTGCAGCTGCCAAGG+AGG | + | chr3_4:78146179-78146198 | Msa0524680:CDS | 70.0% | |
| GCCCCAGCTGCTGCTGCGTC+TGG | + | chr3_4:78146150-78146169 | Msa0524680:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78143594 | 78146564 | 78143594 | ID=Msa0524680;Name=Msa0524680 |
| chr3_4 | mRNA | 78143594 | 78146564 | 78143594 | ID=Msa0524680-mRNA-1;Parent=Msa0524680;Name=Msa0524680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=394|1|1|1|1|1|5|292|323 |
| chr3_4 | exon | 78143594 | 78144245 | 78143594 | ID=Msa0524680-mRNA-1:exon:23066;Parent=Msa0524680-mRNA-1 |
| chr3_4 | exon | 78145103 | 78145171 | 78145103 | ID=Msa0524680-mRNA-1:exon:23067;Parent=Msa0524680-mRNA-1 |
| chr3_4 | exon | 78145471 | 78145569 | 78145471 | ID=Msa0524680-mRNA-1:exon:23068;Parent=Msa0524680-mRNA-1 |
| chr3_4 | exon | 78145638 | 78146030 | 78145638 | ID=Msa0524680-mRNA-1:exon:23069;Parent=Msa0524680-mRNA-1 |
| chr3_4 | exon | 78146120 | 78146564 | 78146120 | ID=Msa0524680-mRNA-1:exon:23070;Parent=Msa0524680-mRNA-1 |
| chr3_4 | five_prime_UTR | 78143594 | 78143987 | 78143594 | ID=Msa0524680-mRNA-1:five_prime_utr;Parent=Msa0524680-mRNA-1 |
| chr3_4 | CDS | 78143988 | 78144245 | 78143988 | ID=Msa0524680-mRNA-1:cds;Parent=Msa0524680-mRNA-1 |
| chr3_4 | CDS | 78145103 | 78145171 | 78145103 | ID=Msa0524680-mRNA-1:cds;Parent=Msa0524680-mRNA-1 |
| chr3_4 | CDS | 78145471 | 78145569 | 78145471 | ID=Msa0524680-mRNA-1:cds;Parent=Msa0524680-mRNA-1 |
| chr3_4 | CDS | 78145638 | 78146030 | 78145638 | ID=Msa0524680-mRNA-1:cds;Parent=Msa0524680-mRNA-1 |
| chr3_4 | CDS | 78146120 | 78146272 | 78146120 | ID=Msa0524680-mRNA-1:cds;Parent=Msa0524680-mRNA-1 |
| chr3_4 | three_prime_UTR | 78146273 | 78146564 | 78146273 | ID=Msa0524680-mRNA-1:three_prime_utr;Parent=Msa0524680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
