AlfalfaGEDB | Msa1166740

M. sativa cultivar zhongmu-4 / Msa1166740

KEGG: -
GO: -
PFAM: PF10358.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166740	XP_013450234.1	95.962	743	28	2	1	742	1	742	0.0	1432

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166740	A0A072U3F5	95.962	743	28	2	1	742	1	742	0.0	1432

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1080880	Msa1166740	0.874183	8.241601e-68	-8.615850e-47
Msa1082410	Msa1166740	0.803838	2.879030e-49	-8.615850e-47
Msa1119020	Msa1166740	0.917541	4.681446e-86	-8.615850e-47
Msa1131930	Msa1166740	0.879821	9.112422e-70	-8.615850e-47
Msa1166740	Msa1380320	0.874880	4.778056e-68	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166740	MtrunA17_Chr7g0267631	95.962	743	28	2	1	742	1	742	0.0	1432
Msa1166740	MtrunA17_Chr1g0176961	59.073	777	259	17	1	742	1	753	0.0	846
Msa1166740	MtrunA17_Chr3g0137731	48.684	304	124	6	408	708	323	597	1.31e-81	272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166740	AT3G11760.1	52.639	758	246	23	1	709	1	694	0.0	683
Msa1166740	AT5G04860.1	44.403	795	349	27	1	737	1	760	1.21e-177	528
Msa1166740	AT5G04860.2	47.209	627	267	20	150	737	8	609	3.59e-150	452
Msa1166740	AT2G10560.1	50.187	267	107	9	484	736	3	257	6.95e-68	225
Msa1166740	AT2G25460.2	44.300	307	122	4	408	711	282	542	1.20e-65	228
Msa1166740	AT2G25460.1	51.748	143	63	2	408	549	282	419	4.11e-29	121

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Find 159 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATGAAGGATTTGCC+AGG	0.576669	7_4:-58843668	None:intergenic
AAACCTTACTTTCCTAAGGC+CGG	0.513408	7_4:-58842558	None:intergenic
AAAGAAGTTATCGGTAAGGA+AGG	0.581404	7_4:+58844058	Msa1166740:CDS
AAAGAGATCACTAGCCGCGA+TGG	0.581709	7_4:+58843359	Msa1166740:CDS
AAATCAGAAAAGGCGGGCCG+TGG	0.509759	7_4:+58842605	Msa1166740:CDS
AACATTCCACTCACAAATCC+TGG	0.431727	7_4:+58842255	Msa1166740:CDS
AACATTTGGGACGAGATCAG+TGG	0.639738	7_4:+58843755	Msa1166740:CDS
AACTATTGCATGCCTGATGC+TGG	0.399535	7_4:+58842863	Msa1166740:CDS
AAGAGGAGGTTGTCTGCAGA+GGG	0.554332	7_4:+58844101	Msa1166740:CDS
AAGCCGCCTAAAGAAGTTAT+CGG	0.423411	7_4:+58844049	Msa1166740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGAAGAAGATTGACGTAT+AGG	-	chr7_4:58841177-58841196	None:intergenic	30.0%
AATTAGCGCTTCAGATTAAA+TGG	+	chr7_4:58841196-58841215	Msa1166740:CDS	30.0%
CATCATCTTTGTAATCTCAA+TGG	+	chr7_4:58841345-58841364	Msa1166740:CDS	30.0%
TTGTAGGATGGATGAAAATT+TGG	+	chr7_4:58841638-58841657	Msa1166740:intron	30.0%
AATTTCCAGGACCAAATATT+AGG	-	chr7_4:58841725-58841744	None:intergenic	30.0%
TCTCTTCAACAATGAAGTTA+AGG	+	chr7_4:58841769-58841788	Msa1166740:intron	30.0%
GTTAAGGTCATTAATTGAAG+AGG	+	chr7_4:58841785-58841804	Msa1166740:intron	30.0%
ATGTAATTGTAGGGATTCAA+TGG	+	chr7_4:58842141-58842160	Msa1166740:intron	30.0%
AATGCAGATATCAATTAGCT+TGG	+	chr7_4:58842430-58842449	Msa1166740:intron	30.0%
GAAATTACAATGACAGAGAA+AGG	+	chr7_4:58842515-58842534	Msa1166740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	58841078	58844357	58841078	ID=Msa1166740;Name=Msa1166740
chr7_4	mRNA	58841078	58844357	58841078	ID=Msa1166740-mRNA-1;Parent=Msa1166740;Name=Msa1166740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0.66\|0\|1\|1\|1\|4\|0\|742
chr7_4	exon	58841078	58841425	58841078	ID=Msa1166740-mRNA-1:exon:18130;Parent=Msa1166740-mRNA-1
chr7_4	exon	58842153	58842308	58842153	ID=Msa1166740-mRNA-1:exon:18131;Parent=Msa1166740-mRNA-1
chr7_4	exon	58842437	58843090	58842437	ID=Msa1166740-mRNA-1:exon:18132;Parent=Msa1166740-mRNA-1
chr7_4	exon	58843287	58844357	58843287	ID=Msa1166740-mRNA-1:exon:18133;Parent=Msa1166740-mRNA-1
chr7_4	CDS	58841078	58841425	58841078	ID=Msa1166740-mRNA-1:cds;Parent=Msa1166740-mRNA-1
chr7_4	CDS	58842153	58842308	58842153	ID=Msa1166740-mRNA-1:cds;Parent=Msa1166740-mRNA-1
chr7_4	CDS	58842437	58843090	58842437	ID=Msa1166740-mRNA-1:cds;Parent=Msa1166740-mRNA-1
chr7_4	CDS	58843287	58844357	58843287	ID=Msa1166740-mRNA-1:cds;Parent=Msa1166740-mRNA-1

Gene Sequence

>Msa1166740

ATGGTGGTGAAGATGATGAGGTGGCGTCCATGGCCGCCACTCGTCACCAAAAAGTATCACGTCAGGCTTAATGTAAAGAAACTCATTGGATGCAATCCTATACGTCAATCTTCTTCAAAATTAGCGCTTCAGATTAAATGGAAAGGTCCTAAGTCAACACTTTCTTCCTTGCGACGAGGCTCCGTCGCAAGAAATTTCACAAGAGAGGCTGTCATGGAATACGACCACGTTTCTGCTGGTTTCGTCGTAAATTTTGATGAAGAATTTCATCATCTTTGTAATCTCAATGGTTACAACAAAGACAATGTCTTGTTTCATCCGTGGGAAATCGCTTTCAATCTTTTTCATGGATTCAATGGAAGCCCAAGAAAAAAGGGTACTGTTGTTGGAACAGCTTTGTTGAATATTGCTGAATTTGCAAATTCAATTGATCAGACCAGTTTTGGTTTGAACATTCCACTCACAAATCCTGGAGATTCTGCACAGCAATCTCCTTTACTCTGTATATCAATTAGCTTGGTGGAGAGAGCAACAGTTCATAGATCAATAGTTCCTGTGTCATCACCATCGGCTCAATCAGAAGAAATTACAATGACAGAGAAAGGTGATCTTTCTGCAATAAAAGCCGGCCTTAGGAAAGTAAGGTTTTTCACAGAATTTGTATCTTCTAGGAAATCAGAAAAGGCGGGCCGTGGAGAAGAAGGAAGTAGTGGTAGCAAGTATTCTAGGAGTGGAGATAATACTCATAACTACTCTCTAGATTTTGACTCACTCGACGATTTAGAAGATTCAGACCGGGGGAATGAGGATTCAAGTGTTGGGAATTCATTCCATTATGGAACTTTGGCCTCTGCAAATGCTGGAGGATCACATTCTTATTATTCCAACACGAGAATGAATTGTGATGACAAAGACATTTGGGTTTACCACAACTATTGCATGCCTGATGCTGGGCGTTCGCATATGGATGAATCTACCACGTCTTCTTCTGAGCCTTATTTATCACAAAGTGCAAAGCGCAGCATACTTCCATGGAGGAAGAGGAAGTTTAGGGGAGAGCCATTGTTAAAAAAGGCCTATGCTGAAGACGGTGGGGACGACATAGATTTTGATCGCCGACAGCTTAGCTCTGAATCTGATGAATCCATCTCTTCAAAGTTTCACAAGACTGGGGATACGCCAATCTCTGAATTCGGAGATGATATGTTTGTTGTTGGGAGTTGGGAGCAGAAAGAGATCACTAGCCGCGATGGTCACATGAAGCTTGAGACACAAGTCTTCTTTGCCTCAATTGATCAACGCAGTGAACGCGCGGCGGGTGAGAGTGCATGTACTGCTCTTGTTGCCGTAATTGCTGATTGGTTCCAGAACTATCATGATTTCATGCCCCTAAAGTCCCAGTTCGACAGTCTAATTCGAGAAGGCTCCTCAGAATGGAGAAACCTACGCGACAATGAGACCTGTAGAAATCGGTTCCCTGATGGGCATTTTGATCTAGAAACAGTCCTTGAAGCAAAAATACGTCCGCTCTCTGTTGTTCCTGGCAAATCCTTCATTGGTTTCTTTCATCCAGAAGGAATGGACGAGGAAAGATTTGAGTTTCTTCGCGGCTCAATGTCTTTCGACAACATTTGGGACGAGATCAGTGGTTTTGAACATGAGTGTCTCACCAATGGTGGACCTCATGTTTTCATTGTTAGTTGGAATGACCATTTTTTCATTCTCAAAGTTGAATCTGACTGTTACTACATCATTGACACATTGGGAGAGAGGCTTCATGAAGGATGCAATCAAGCATATATCCTAAAATTTGACAGCAACACAGTAATTCACAAAACAAAAAGTGTTCCTCAATCATCAAATGATAAAAAAGCAACTGGTGGCTGGAAAACTGTTGCGCAACTATTAGAGCGCAATAAAAAGCCGCCTAAAGAAGTTATCGGTAAGGAAGGTGATTCTATTGAAGAGCAAGAAGAGGAGGTTGTCTGCAGAGGGAAGGAAGCATGCAAAGAGTACATCAAAAGCTTCTTGGCCGCAATTCCCATCAGAGAGTTGCAGGCTGATATAATGAAAAATAATAGCACATTTTCACCTCATCAAAGACTACAAATTGAGTTTCATTACACTCAATTGTTACAGCCTTGTTTATCAACAACAACTCCTGCGGTGGAAGCAACCATGGCTGCAGCAGACACACTAGCTCTTGCAATAAATGAGATTTCTACATGA

Protein sequence

>Msa1166740

MVVKMMRWRPWPPLVTKKYHVRLNVKKLIGCNPIRQSSSKLALQIKWKGPKSTLSSLRRGSVARNFTREAVMEYDHVSAGFVVNFDEEFHHLCNLNGYNKDNVLFHPWEIAFNLFHGFNGSPRKKGTVVGTALLNIAEFANSIDQTSFGLNIPLTNPGDSAQQSPLLCISISLVERATVHRSIVPVSSPSAQSEEITMTEKGDLSAIKAGLRKVRFFTEFVSSRKSEKAGRGEEGSSGSKYSRSGDNTHNYSLDFDSLDDLEDSDRGNEDSSVGNSFHYGTLASANAGGSHSYYSNTRMNCDDKDIWVYHNYCMPDAGRSHMDESTTSSSEPYLSQSAKRSILPWRKRKFRGEPLLKKAYAEDGGDDIDFDRRQLSSESDESISSKFHKTGDTPISEFGDDMFVVGSWEQKEITSRDGHMKLETQVFFASIDQRSERAAGESACTALVAVIADWFQNYHDFMPLKSQFDSLIREGSSEWRNLRDNETCRNRFPDGHFDLETVLEAKIRPLSVVPGKSFIGFFHPEGMDEERFEFLRGSMSFDNIWDEISGFEHECLTNGGPHVFIVSWNDHFFILKVESDCYYIIDTLGERLHEGCNQAYILKFDSNTVIHKTKSVPQSSNDKKATGGWKTVAQLLERNKKPPKEVIGKEGDSIEEQEEEVVCRGKEACKEYIKSFLAAIPIRELQADIMKNNSTFSPHQRLQIEFHYTQLLQPCLSTTTPAVEATMAAADTLALAINEIST*