AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1082410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082410 MtrunA17_Chr7g0269991 96.537 462 11 1 1 462 1 457 0.0 929
Msa1082410 MtrunA17_Chr4g0071391 51.057 331 155 3 139 462 106 436 3.27e-123 367
Msa1082410 MtrunA17_Chr7g0258851 44.737 418 203 7 66 462 167 577 2.57e-122 369
Msa1082410 MtrunA17_Chr1g0175671 46.015 389 192 5 86 462 117 499 7.01e-120 361
Msa1082410 MtrunA17_Chr8g0368461 45.714 385 181 5 106 462 134 518 5.54e-119 359
Msa1082410 MtrunA17_Chr1g0213281 49.096 332 157 4 142 462 175 505 9.84e-119 358
Msa1082410 MtrunA17_Chr5g0413271 40.363 441 220 8 38 462 53 466 5.17e-114 344
Msa1082410 MtrunA17_Chr4g0068111 47.478 337 160 5 139 462 111 443 2.46e-113 342
Msa1082410 MtrunA17_Chr7g0259711 49.096 332 158 3 142 462 91 422 1.27e-105 322
Msa1082410 MtrunA17_Chr2g0287901 47.147 333 162 4 142 462 97 427 1.76e-102 313
Msa1082410 MtrunA17_Chr3g0126021 39.840 374 197 7 95 462 98 449 2.24e-93 290
Msa1082410 MtrunA17_Chr8g0384151 40.367 327 187 3 138 462 86 406 8.12e-85 267
Msa1082410 MtrunA17_Chr1g0210771 36.556 331 187 5 140 462 57 372 8.90e-82 258
Msa1082410 MtrunA17_Chr5g0430371 38.192 343 179 8 142 462 58 389 1.02e-81 258
Msa1082410 MtrunA17_Chr1g0171171 38.066 331 181 7 140 462 51 365 1.15e-81 257
Msa1082410 MtrunA17_Chr3g0105301 37.910 335 183 8 142 462 43 366 1.58e-80 254
Msa1082410 MtrunA17_Chr2g0314801 42.136 337 174 10 140 470 31 352 1.16e-78 249
Msa1082410 MtrunA17_Chr3g0097891 40.000 325 176 8 142 462 31 340 2.48e-78 248
Msa1082410 MtrunA17_Chr2g0325481 38.855 332 179 8 136 462 44 356 8.08e-78 247
Msa1082410 MtrunA17_Chr5g0413851 38.838 327 179 8 140 462 40 349 1.34e-77 246
Msa1082410 MtrunA17_Chr4g0006991 37.830 341 187 8 140 462 84 417 2.42e-77 248
Msa1082410 MtrunA17_Chr2g0283581 38.226 327 184 7 138 462 38 348 4.93e-76 242
Msa1082410 MtrunA17_Chr3g0085071 37.615 327 183 9 140 462 44 353 2.66e-75 241
Msa1082410 MtrunA17_Chr4g0041011 36.202 337 185 8 134 462 39 353 3.52e-75 240
Msa1082410 MtrunA17_Chr4g0045951 36.170 329 193 6 136 462 39 352 1.71e-73 236
Msa1082410 MtrunA17_Chr1g0178081 38.739 333 142 7 139 462 52 331 1.81e-73 236
Msa1082410 MtrunA17_Chr3g0085081 35.583 326 191 6 140 462 29 338 2.53e-73 235
Msa1082410 MtrunA17_Chr3g0091031 34.969 326 193 6 140 462 29 338 9.13e-73 233
Msa1082410 MtrunA17_Chr2g0314791 37.612 335 175 10 138 462 25 335 3.93e-72 232
Msa1082410 MtrunA17_Chr4g0005491 36.812 345 191 8 139 462 59 397 5.26e-72 233
Msa1082410 MtrunA17_Chr4g0045941 37.771 323 184 7 142 462 33 340 7.29e-72 231
Msa1082410 MtrunA17_Chr7g0243301 37.135 342 190 8 141 462 63 399 4.13e-70 228
Msa1082410 MtrunA17_Chr5g0437291 38.218 348 181 11 140 462 163 501 1.90e-69 230
Msa1082410 MtrunA17_Chr3g0113671 36.207 348 185 10 140 462 104 439 4.87e-67 222
Msa1082410 MtrunA17_Chr8g0360521 35.127 353 183 12 137 462 66 399 2.43e-66 219
Msa1082410 MtrunA17_Chr7g0242701 37.026 343 187 10 140 462 84 417 3.16e-65 216
Msa1082410 MtrunA17_Chr4g0005481 36.232 345 184 8 140 462 106 436 1.79e-64 215
Msa1082410 MtrunA17_Chr5g0437601 35.429 350 195 9 135 463 76 415 2.73e-64 214
Msa1082410 MtrunA17_Chr3g0114101 36.416 346 181 10 142 462 89 420 8.29e-64 213
Msa1082410 MtrunA17_Chr6g0476041 28.571 511 291 19 6 462 14 504 3.42e-52 184
Msa1082410 MtrunA17_Chr1g0209921 38.912 239 129 7 140 375 42 266 1.57e-50 173
Msa1082410 MtrunA17_Chr1g0188191 31.215 362 184 14 142 462 234 571 2.73e-46 169
Msa1082410 MtrunA17_Chr4g0049421 30.548 347 203 10 142 462 48 382 7.17e-46 164
Msa1082410 MtrunA17_Chr6g0455901 30.854 363 204 15 142 472 71 418 4.28e-45 162
Msa1082410 MtrunA17_Chr6g0456691 32.955 352 191 11 139 462 75 409 8.52e-44 159
Msa1082410 MtrunA17_Chr2g0283851 32.102 352 207 11 135 462 47 390 5.87e-43 156
Msa1082410 MtrunA17_Chr4g0070341 28.537 410 240 12 90 462 68 461 7.54e-43 157
Msa1082410 MtrunA17_Chr8g0347321 30.682 352 200 13 140 462 93 429 1.35e-41 154
Msa1082410 MtrunA17_Chr8g0384421 29.532 342 212 10 140 462 131 462 4.50e-40 150
Msa1082410 MtrunA17_Chr8g0391481 30.303 363 206 13 131 462 16 362 1.32e-39 147
Msa1082410 MtrunA17_Chr5g0414091 31.268 355 196 15 140 462 83 421 6.47e-39 146
Msa1082410 MtrunA17_Chr6g0456681 31.534 352 197 12 140 462 62 398 1.17e-38 145
Msa1082410 MtrunA17_Chr6g0451321 29.513 349 205 14 140 462 114 447 1.75e-38 145
Msa1082410 MtrunA17_Chr3g0140371 30.172 348 201 12 142 462 18 350 3.71e-38 142
Msa1082410 MtrunA17_Chr8g0387921 29.630 351 204 12 141 462 73 409 4.78e-38 143
Msa1082410 MtrunA17_Chr7g0226991 28.809 361 204 12 136 462 51 392 9.69e-38 142
Msa1082410 MtrunA17_Chr5g0414051 29.545 352 201 12 142 462 75 410 1.22e-36 140
Msa1082410 MtrunA17_Chr2g0287931 50.400 125 60 1 202 324 2 126 3.45e-36 130
Msa1082410 MtrunA17_Chr5g0414061 29.429 350 205 13 141 462 93 428 3.56e-36 139
Msa1082410 MtrunA17_Chr5g0414041 30.659 349 202 13 142 462 87 423 3.30e-33 130
Msa1082410 MtrunA17_Chr7g0221291 45.055 91 50 0 140 230 77 167 5.70e-24 98.2
Msa1082410 MtrunA17_Chr7g0221271 45.098 102 55 1 139 240 76 176 9.23e-24 99.0
Msa1082410 MtrunA17_Chr3g0085101 36.634 101 61 2 343 440 6 106 1.36e-19 84.3
Msa1082410 MtrunA17_Chr2g0287911 54.386 57 19 1 141 197 60 109 3.15e-16 74.7
Msa1082410 MtrunA17_Chr1g0209931 46.154 78 36 4 386 462 10 82 1.04e-14 70.1
Msa1082410 MtrunA17_Chr7g0221281 27.434 226 132 8 262 462 8 226 5.62e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1082410 AT3G62390.1 58.085 470 180 7 1 462 1 461 0.0 561
Msa1082410 AT3G62390.2 56.923 390 154 6 1 385 1 381 8.48e-154 444
Msa1082410 AT3G12060.1 52.464 345 150 5 131 462 182 525 2.11e-127 381
Msa1082410 AT5G20590.1 50.904 332 155 4 139 462 138 469 1.26e-124 372
Msa1082410 AT5G06700.1 51.497 334 151 4 139 462 252 584 1.64e-123 373
Msa1082410 AT1G60790.1 45.227 440 211 11 49 462 87 522 1.06e-121 366
Msa1082410 AT5G49340.1 48.665 337 162 5 137 462 95 431 6.92e-115 346
Msa1082410 AT5G19160.1 49.560 341 147 5 142 462 99 434 1.45e-108 330
Msa1082410 AT3G06080.2 48.048 333 161 3 142 462 103 435 1.23e-106 325
Msa1082410 AT5G06230.2 43.658 339 176 6 138 462 17 354 5.12e-92 284
Msa1082410 AT5G06230.1 43.658 339 176 6 138 462 58 395 1.38e-91 285
Msa1082410 AT3G11570.1 45.367 313 162 5 158 462 98 409 9.89e-90 280
Msa1082410 AT1G48880.1 41.284 327 176 5 141 462 114 429 1.25e-89 281
Msa1082410 AT5G20590.2 39.362 376 214 7 11 377 8 378 5.62e-88 274
Msa1082410 AT5G19160.2 54.202 238 107 1 142 377 99 336 6.32e-88 273
Msa1082410 AT3G06080.1 52.521 238 111 1 142 377 103 340 3.88e-84 263
Msa1082410 AT1G29050.1 40.248 323 176 5 142 462 61 368 2.98e-83 262
Msa1082410 AT2G34070.1 37.430 358 197 8 111 462 37 373 5.14e-80 254
Msa1082410 AT2G30010.1 39.474 342 175 7 142 462 56 386 5.37e-79 251
Msa1082410 AT2G30010.2 39.474 342 175 7 142 462 99 429 8.80e-79 252
Msa1082410 AT3G54260.1 37.349 332 179 7 142 462 51 364 4.90e-78 248
Msa1082410 AT2G42570.1 37.346 324 186 6 141 462 46 354 6.21e-78 248
Msa1082410 AT1G78710.1 37.463 339 194 8 127 462 23 346 1.51e-77 246
Msa1082410 AT2G30900.1 38.415 328 184 8 140 462 41 355 3.22e-77 246
Msa1082410 AT2G31110.2 34.417 369 216 8 96 462 8 352 4.48e-76 243
Msa1082410 AT5G58600.1 37.758 339 179 10 142 462 66 390 9.20e-76 243
Msa1082410 AT1G73140.1 36.267 375 197 12 116 462 35 395 9.89e-73 236
Msa1082410 AT2G40150.1 38.286 350 179 11 141 462 70 410 1.90e-72 235
Msa1082410 AT2G40160.1 36.127 346 187 9 142 462 77 413 3.93e-72 234
Msa1082410 AT2G40160.2 36.127 346 187 9 142 462 77 413 5.47e-72 234
Msa1082410 AT3G14850.2 38.532 327 179 8 142 462 34 344 1.57e-71 231
Msa1082410 AT3G55990.1 36.885 366 190 11 126 462 120 473 1.43e-69 229
Msa1082410 AT2G38320.1 36.207 348 187 11 140 462 57 394 7.36e-69 226
Msa1082410 AT5G01360.2 35.277 343 194 10 140 462 34 368 1.10e-68 224
Msa1082410 AT5G01360.1 35.277 343 194 10 140 462 90 424 2.94e-68 225
Msa1082410 AT5G06230.3 43.825 251 133 2 138 380 58 308 7.35e-68 220
Msa1082410 AT5G01620.2 34.957 349 196 9 134 462 102 439 4.55e-64 214
Msa1082410 AT5G01620.1 34.957 349 196 9 134 462 102 439 4.55e-64 214
Msa1082410 AT5G01620.3 34.957 349 196 9 134 462 110 447 5.31e-64 214
Msa1082410 AT3G11030.1 34.473 351 196 9 135 462 99 438 2.33e-62 210
Msa1082410 AT2G40320.1 33.705 359 206 10 124 462 66 412 3.58e-59 201
Msa1082410 AT2G38320.2 34.891 321 175 10 166 462 1 311 1.10e-57 194
Msa1082410 AT5G58600.2 39.149 235 131 5 142 375 66 289 1.05e-56 190
Msa1082410 AT1G78710.2 32.249 338 160 9 127 462 16 286 2.10e-54 184
Msa1082410 AT2G30900.2 39.316 234 130 5 140 372 41 263 2.70e-54 183
Msa1082410 AT2G31110.3 33.818 275 161 5 96 370 8 261 1.39e-52 179
Msa1082410 AT2G40160.3 36.327 245 138 6 142 377 77 312 2.31e-51 177
Msa1082410 AT5G64470.3 33.918 342 193 14 142 462 55 384 3.13e-50 176
Msa1082410 AT2G34070.2 36.187 257 140 7 212 462 1 239 3.62e-50 172
Msa1082410 AT5G64470.2 33.718 347 193 15 142 462 55 390 1.47e-49 174
Msa1082410 AT5G51640.1 31.383 376 202 14 125 462 121 478 5.54e-48 172
Msa1082410 AT4G25360.1 31.522 368 193 15 134 462 167 514 1.06e-47 172
Msa1082410 AT4G25360.2 31.522 368 193 15 134 462 167 514 1.06e-47 172
Msa1082410 AT1G01430.1 32.468 385 211 16 110 462 70 437 4.62e-46 166
Msa1082410 AT1G70230.1 31.593 383 222 13 101 462 38 401 1.72e-45 164
Msa1082410 AT2G14530.1 29.692 357 207 14 135 462 55 396 5.06e-45 162
Msa1082410 AT3G14850.1 36.576 257 141 8 212 462 1 241 1.75e-44 157
Msa1082410 AT4G23790.1 31.701 388 222 15 105 463 45 418 3.00e-44 161
Msa1082410 AT5G15890.1 29.577 426 250 16 59 459 109 509 1.04e-43 161
Msa1082410 AT3G28150.1 31.322 348 205 10 137 462 65 400 7.83e-43 157
Msa1082410 AT5G20680.6 29.274 427 256 15 57 462 46 447 7.97e-42 155
Msa1082410 AT5G20680.2 29.274 427 256 15 57 462 122 523 1.77e-41 155
Msa1082410 AT5G20680.4 29.439 428 254 16 57 462 140 541 1.77e-41 155
Msa1082410 AT5G20680.1 29.439 428 254 16 57 462 140 541 1.77e-41 155
Msa1082410 AT5G20680.3 29.439 428 254 16 57 462 140 541 1.77e-41 155
Msa1082410 AT5G20680.5 29.439 428 254 16 57 462 140 541 1.77e-41 155
Msa1082410 AT4G11090.1 29.695 394 233 14 98 463 39 416 2.85e-41 153
Msa1082410 AT4G01080.1 30.725 345 202 11 141 462 90 420 4.19e-41 152
Msa1082410 AT5G64020.1 28.818 347 216 11 142 462 57 398 1.84e-40 150
Msa1082410 AT3G02440.2 29.565 345 206 9 142 462 135 466 3.17e-40 151
Msa1082410 AT3G02440.1 29.565 345 206 9 142 462 127 458 3.82e-40 150
Msa1082410 AT5G15900.1 30.595 353 205 12 142 471 67 402 8.44e-39 146
Msa1082410 AT5G15900.2 30.595 353 205 12 142 471 86 421 1.35e-38 146
Msa1082410 AT2G31110.1 34.804 204 123 5 261 462 9 204 1.39e-38 140
Msa1082410 AT5G64470.1 32.342 269 157 12 142 396 55 312 9.16e-34 130
Msa1082410 AT5G64470.4 32.342 269 157 12 142 396 55 312 9.75e-34 129
Msa1082410 AT2G37720.1 29.885 348 205 13 139 462 140 472 4.75e-32 128

Find 96 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGGATAAATGGTATTTA+AGG 0.130435 7_2:-82527071 None:intergenic
GAACTATAGTTTCAGGTTTC+TGG 0.139405 7_2:+82525412 Msa1082410:CDS
TTCCCATTGGTTCCTATTAA+TGG 0.150183 7_2:-82525303 None:intergenic
TCCTTTCATCTTTCACTATC+TGG 0.168937 7_2:+82524101 Msa1082410:CDS
CCTTGGAAGGTCACAATCTT+TGG 0.179023 7_2:-82524587 None:intergenic
TAACTAGTTTGTCAGAATTT+AGG 0.182487 7_2:+82527155 Msa1082410:CDS
TATATTCTTCTCAGGATAAA+TGG 0.237473 7_2:-82527080 None:intergenic
GCTAGTCTTGCTTCGCATTA+AGG 0.237479 7_2:-82527441 None:intergenic
GTTCAGCACCATCTCATTTC+AGG 0.238683 7_2:+82526686 Msa1082410:CDS
GATGGTCACCCATCCATTTA+TGG 0.238705 7_2:+82527181 Msa1082410:CDS
AGAAGCCAAAAGAATGTTTC+AGG 0.248012 7_2:+82524256 Msa1082410:CDS
ATGGAGAGGAGCTGATATTT+TGG 0.261754 7_2:+82525651 Msa1082410:CDS
TCAAAACCTTCATCTATAAA+AGG 0.284074 7_2:-82524511 None:intergenic
AGAGAGGGAACTATAGTTTC+AGG 0.285584 7_2:+82525405 Msa1082410:CDS
TGTAGTCATTGGTGTCTTCC+AGG 0.301304 7_2:+82527235 Msa1082410:CDS
CAAGAATCTCTAGCATAAAT+AGG 0.310027 7_2:-82524487 None:intergenic
TTGTGGGTGATTCCATTAAT+AGG 0.313259 7_2:+82525291 Msa1082410:CDS
TGGAGTTTATAAGAGGAAAA+AGG 0.315433 7_2:+82525261 Msa1082410:CDS
TGGATCCTGAAACATTCTTT+TGG 0.320732 7_2:-82524261 None:intergenic
ACTATAGTTCCCTCTCTCTT+TGG 0.323759 7_2:-82525399 None:intergenic
GTCAATGAATGAACAGTTAA+AGG 0.328689 7_2:-82524178 None:intergenic
TCTGCAACAGGGGAGGTAAT+TGG 0.335189 7_2:+82527002 Msa1082410:intron
GTGATTTAACAAAAGGGTAT+TGG 0.335445 7_2:+82524446 Msa1082410:CDS
GTTCATGCACGATTTGATAA+TGG 0.348937 7_2:-82523923 None:intergenic
TGATTTAACAAAAGGGTATT+GGG 0.360468 7_2:+82524447 Msa1082410:CDS
CTTGGAAGGTCACAATCTTT+GGG 0.364337 7_2:-82524586 None:intergenic
CTGAACTTCGAAAGAAAACT+TGG 0.373534 7_2:-82526669 None:intergenic
CTATGATGACTTGGGCTTCA+TGG 0.375370 7_2:+82526617 Msa1082410:CDS
AAAGAGTGTGATTTAACAAA+AGG 0.376080 7_2:+82524439 Msa1082410:CDS
CGTGCCTCATACACTCTCTT+TGG 0.387282 7_2:-82525362 None:intergenic
TTGTCAGAATTTAGGATAGA+TGG 0.389050 7_2:+82527163 Msa1082410:CDS
AGATTTACAGAGACAGTGTT+TGG 0.414712 7_2:-82524151 None:intergenic
GTATTTAAGGTTTCATTAAG+AGG 0.418975 7_2:-82527058 None:intergenic
CGAATTGATGCGATTGATCA+TGG 0.420809 7_2:+82525619 Msa1082410:CDS
ATGGTCACCCATCCATTTAT+GGG 0.421431 7_2:+82527182 Msa1082410:CDS
GAGAAGTGCTAACCCAGCTT+TGG 0.426335 7_2:-82525710 None:intergenic
TGAAGGTGTAGTGGTTGATT+TGG 0.426959 7_2:-82524128 None:intergenic
GAATTCAAGATTGTAGTCAT+TGG 0.430062 7_2:+82527224 Msa1082410:CDS
AAAATGTTGGAGTTTATAAG+AGG 0.432567 7_2:+82525254 Msa1082410:CDS
TTGTGAGGGGAATGGAAGAT+TGG 0.439163 7_2:+82524534 Msa1082410:CDS
TCTATGATTATATTCTTCTC+AGG 0.450722 7_2:-82527088 None:intergenic
ATCGCATCAATTCGCAAAGT+TGG 0.456158 7_2:-82525610 None:intergenic
GAAAGATGAAAGGAAGAAGA+TGG 0.459359 7_2:-82524092 None:intergenic
GTAGTCATTGGTGTCTTCCA+GGG 0.468368 7_2:+82527236 Msa1082410:CDS
TGTAAAGAGTAAAAGTCTAG+TGG 0.470076 7_2:-82524053 None:intergenic
TTCCATACATCTGGAACCCC+TGG 0.474632 7_2:-82527253 None:intergenic
AGGAAAATTACCAAAGAGAG+AGG 0.476594 7_2:+82525389 Msa1082410:CDS
TTTCGAAAGCTATGATGACT+TGG 0.480355 7_2:+82526608 Msa1082410:CDS
TATGATGACTTGGGCTTCAT+GGG 0.480835 7_2:+82526618 Msa1082410:CDS
AGCTGTAGAAACATTTAGCC+GGG 0.486758 7_2:-82526584 None:intergenic
AGACGGTTATCTATTAAAGA+TGG 0.489310 7_2:-82524229 None:intergenic
TCACATCACAAAACCAAAGC+TGG 0.490317 7_2:+82525697 Msa1082410:CDS
TTGATCATGGTTCGTCAAGA+TGG 0.494455 7_2:+82525632 Msa1082410:CDS
TTCGAAAGCTATGATGACTT+GGG 0.498467 7_2:+82526609 Msa1082410:CDS
AAGAGTGTGATTTAACAAAA+GGG 0.500174 7_2:+82524440 Msa1082410:CDS
GATTTGATAATGGAAGAATA+AGG 0.500781 7_2:-82523913 None:intergenic
GTTTGCTACAAACAAGTCAA+TGG 0.501800 7_2:-82523977 None:intergenic
ACTACAATCTTGAATTCTTG+AGG 0.506067 7_2:-82527218 None:intergenic
ATTCCATTAATAGGAACCAA+TGG 0.514445 7_2:+82525300 Msa1082410:CDS
TGCACAACATTGATTCCCAT+TGG 0.516029 7_2:-82525316 None:intergenic
CCAAAGATTGTGACCTTCCA+AGG 0.518341 7_2:+82524587 Msa1082410:CDS
TGGATAGAAACTTTACTAAG+TGG 0.522870 7_2:+82524554 Msa1082410:CDS
CATGAAAGCAAAGCAAGAGT+AGG 0.524542 7_2:+82525574 Msa1082410:CDS
AGGATTTATTACTATCAAGA+AGG 0.525446 7_2:+82526547 Msa1082410:intron
AGATCCAAAGAGAGTGTATG+AGG 0.528363 7_2:+82525358 Msa1082410:CDS
AAGCTGTAGAAACATTTAGC+CGG 0.530807 7_2:-82526585 None:intergenic
TTCCATTAATAGGAACCAAT+GGG 0.535430 7_2:+82525301 Msa1082410:CDS
GCTATAGAAAACAACCATGT+TGG 0.538015 7_2:+82524292 Msa1082410:CDS
ATGAAAGCAAAGCAAGAGTA+GGG 0.551438 7_2:+82525575 Msa1082410:CDS
TAGTCATTGGTGTCTTCCAG+GGG 0.555746 7_2:+82527237 Msa1082410:CDS
GAAACTTTACTAAGTGGAGA+TGG 0.558108 7_2:+82524560 Msa1082410:CDS
GTAAAGAGTAAAAGTCTAGT+GGG 0.561661 7_2:-82524052 None:intergenic
ACAGAGACAGTGTTTGGTGA+AGG 0.563414 7_2:-82524145 None:intergenic
GGTTTCATTAAGAGGATGAG+TGG 0.565715 7_2:-82527050 None:intergenic
AGTGTTTGGTGAAGGTGTAG+TGG 0.573224 7_2:-82524137 None:intergenic
GTTATATTCAACCATGTCAC+GGG 0.574652 7_2:-82527136 None:intergenic
GAAGAATAAGGAAGTTGCAG+AGG 0.577578 7_2:-82523901 None:intergenic
GAAACAAACCTGAAATGAGA+TGG 0.579203 7_2:-82526694 None:intergenic
GCCAGATAGTGAAAGATGAA+AGG 0.582837 7_2:-82524102 None:intergenic
CACATCACAAAACCAAAGCT+GGG 0.583781 7_2:+82525698 Msa1082410:CDS
AAGGAACTCTAGTTCATCCC+CGG 0.588297 7_2:+82526566 Msa1082410:CDS
CACTTGAAGTAGCACCAACA+TGG 0.588608 7_2:-82524306 None:intergenic
TGAACTTCGAAAGAAAACTT+GGG 0.590332 7_2:-82526668 None:intergenic
AGGGGAGGTAATTGGAACTC+AGG 0.590917 7_2:+82527010 Msa1082410:intron
GATGACTTGGGCTTCATGGG+TGG 0.595229 7_2:+82526621 Msa1082410:CDS
TTGAGAGAGACTACCTTGGA+AGG 0.601243 7_2:-82524600 None:intergenic
GAGTGTATGAGGCACGTGGA+AGG 0.601700 7_2:+82525369 Msa1082410:CDS
AGATGAAAACTCCCGTGACA+TGG 0.604222 7_2:+82527125 Msa1082410:CDS
AGTTATATTCAACCATGTCA+CGG 0.606976 7_2:-82527137 None:intergenic
CATGGTTCGTCAAGATGGAG+AGG 0.632218 7_2:+82525637 Msa1082410:CDS
AATGCATGGTAATAGAGCAA+AGG 0.635206 7_2:+82524342 Msa1082410:CDS
GGAAAATTACCAAAGAGAGA+GGG 0.638676 7_2:+82525390 Msa1082410:CDS
GCTGTAGAAACATTTAGCCG+GGG 0.684407 7_2:-82526583 None:intergenic
AAGAGAGTGTATGAGGCACG+TGG 0.685399 7_2:+82525365 Msa1082410:CDS
GGAGGTAATTGGAACTCAGG+AGG 0.685615 7_2:+82527013 Msa1082410:CDS
CTCAGGAGGACATTGTACAG+AGG 0.744717 7_2:+82527027 Msa1082410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTCAATATTTTTTTT+TGG + chr7_2:82524619-82524638 Msa1082410:intron 10.0%
!!! TAAAGTTTTGATTTTTAAGA+AGG + chr7_2:82524396-82524415 Msa1082410:CDS 15.0%
!!! GAACAAATATCAAATATTTT+GGG - chr7_2:82525492-82525511 None:intergenic 15.0%
!!! AGAACAAATATCAAATATTT+TGG - chr7_2:82525493-82525512 None:intergenic 15.0%
!! TTTGTCAATTTATCAAATTT+AGG + chr7_2:82526132-82526151 Msa1082410:intron 15.0%
!! TTGTCAATTTATCAAATTTA+GGG + chr7_2:82526133-82526152 Msa1082410:intron 15.0%
!!! AAAGGTATTATTCTATATAT+TGG + chr7_2:82526240-82526259 Msa1082410:intron 15.0%
!!! AAGGTATTATTCTATATATT+GGG + chr7_2:82526241-82526260 Msa1082410:intron 15.0%
!!! CAAAAGACATACAATTATTT+TGG + chr7_2:82524961-82524980 Msa1082410:intron 20.0%
!! ATTATTGACAAGACATAATT+AGG + chr7_2:82525063-82525082 Msa1082410:intron 20.0%
!! TTATTGACAAGACATAATTA+GGG + chr7_2:82525064-82525083 Msa1082410:intron 20.0%
!!! GCAAAGTTAATTTTATTCTT+TGG + chr7_2:82525198-82525217 Msa1082410:intron 20.0%
!! TAATTATTCAGAACTTTACT+TGG + chr7_2:82525435-82525454 Msa1082410:intron 20.0%
!! AATGTATAATTGTATATGAC+TGG + chr7_2:82525465-82525484 Msa1082410:intron 20.0%
!!! TTAAAATACTAGAGCATTTA+AGG - chr7_2:82525785-82525804 None:intergenic 20.0%
!! CATCTATAAGAAATCATATT+AGG - chr7_2:82525864-82525883 None:intergenic 20.0%
!! TCATTAAGTATTCAACTTTA+GGG - chr7_2:82525985-82526004 None:intergenic 20.0%
!! TTCATTAAGTATTCAACTTT+AGG - chr7_2:82525986-82526005 None:intergenic 20.0%
!! AAGTTGAATACTTAATGAAA+CGG + chr7_2:82525987-82526006 Msa1082410:intron 20.0%
!!! ATGAAGTTTTAATCTAATAG+AGG + chr7_2:82526193-82526212 Msa1082410:intron 20.0%
!!! TGAAGTTTTAATCTAATAGA+GGG + chr7_2:82526194-82526213 Msa1082410:intron 20.0%
!! AGGTATTATTCTATATATTG+GGG + chr7_2:82526242-82526261 Msa1082410:intron 20.0%
!! ATAAATGTTAAACAAAAGCT+TGG - chr7_2:82526377-82526396 None:intergenic 20.0%
!!! CATGTTAGTTTTTTTTTAGT+AGG - chr7_2:82526515-82526534 None:intergenic 20.0%
!! TGAAAAAAGTTGTCTATATT+TGG + chr7_2:82526928-82526947 Msa1082410:intron 20.0%
!! AGTTACAGAAAAAATGAATA+GGG - chr7_2:82527334-82527353 None:intergenic 20.0%
!!! GATTTGATAATGGAAGAATA+AGG - chr7_2:82523916-82523935 None:intergenic 25.0%
!!! AGAGTTTTTTTGTAGCATTA+TGG - chr7_2:82523948-82523967 None:intergenic 25.0%
!!! CTTTCATTTTTCATCATCAA+TGG + chr7_2:82524003-82524022 Msa1082410:exon 25.0%
!! TTTTTGTAGAGTGAAGTTTT+GGG - chr7_2:82524206-82524225 None:intergenic 25.0%
!!! TTTTTTGTAGAGTGAAGTTT+TGG - chr7_2:82524207-82524226 None:intergenic 25.0%
!! GTTAATTTTACTTCAATGCA+TGG + chr7_2:82524328-82524347 Msa1082410:CDS 25.0%
!!! TTTGATTTTTAAGAAGGTTG+AGG + chr7_2:82524402-82524421 Msa1082410:CDS 25.0%
!! AAAGAGTGTGATTTAACAAA+AGG + chr7_2:82524439-82524458 Msa1082410:CDS 25.0%
!! AAGAGTGTGATTTAACAAAA+GGG + chr7_2:82524440-82524459 Msa1082410:CDS 25.0%
!!! TGATTTAACAAAAGGGTATT+GGG + chr7_2:82524447-82524466 Msa1082410:CDS 25.0%
! TCAAAACCTTCATCTATAAA+AGG - chr7_2:82524514-82524533 None:intergenic 25.0%
! ATAAGTTGTTAATCCAAACA+AGG - chr7_2:82524697-82524716 None:intergenic 25.0%
!!! TGTTTTAAGTTGTTTTCGTA+AGG + chr7_2:82524835-82524854 Msa1082410:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+GGG - chr7_2:82524864-82524883 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG - chr7_2:82524865-82524884 None:intergenic 25.0%
! CAAATAAGTCAATCCAAATA+AGG + chr7_2:82524899-82524918 Msa1082410:intron 25.0%
!! GTCTTTTGTCAATAATTTCA+TGG - chr7_2:82524949-82524968 None:intergenic 25.0%
! ATGTATTGTGTTAGTCAATT+TGG + chr7_2:82525032-82525051 Msa1082410:intron 25.0%
! CAAAATCATTGTTTACTCTT+AGG + chr7_2:82525147-82525166 Msa1082410:intron 25.0%
!!! GGATATTATTTTTCTGTCAT+AGG + chr7_2:82525219-82525238 Msa1082410:intron 25.0%
! AAAATGTTGGAGTTTATAAG+AGG + chr7_2:82525254-82525273 Msa1082410:CDS 25.0%
!!! GTGTTGAACTTTATTTTAAG+AGG + chr7_2:82525893-82525912 Msa1082410:intron 25.0%
! AGTTGAATACTTAATGAAAC+GGG + chr7_2:82525988-82526007 Msa1082410:intron 25.0%
! TTAGACACATGTTATTCTAT+AGG - chr7_2:82526081-82526100 None:intergenic 25.0%
! ATTATTCTATATATTGGGGT+TGG + chr7_2:82526246-82526265 Msa1082410:intron 25.0%
! TTATTCTATATATTGGGGTT+GGG + chr7_2:82526247-82526266 Msa1082410:intron 25.0%
!!! GTTAATTTTGAAAAATGAGC+TGG + chr7_2:82526338-82526357 Msa1082410:intron 25.0%
! AGGATTTATTACTATCAAGA+AGG + chr7_2:82526547-82526566 Msa1082410:intron 25.0%
!! GTCAAAGCATTTCAAATAAA+TGG + chr7_2:82526814-82526833 Msa1082410:intron 25.0%
!! GTATTTAAGGTTTCATTAAG+AGG - chr7_2:82527061-82527080 None:intergenic 25.0%
! TATATTCTTCTCAGGATAAA+TGG - chr7_2:82527083-82527102 None:intergenic 25.0%
! TCTATGATTATATTCTTCTC+AGG - chr7_2:82527091-82527110 None:intergenic 25.0%
!! TAACTAGTTTGTCAGAATTT+AGG + chr7_2:82527155-82527174 Msa1082410:CDS 25.0%
! TTTCACTTACAAAATAGATG+AGG + chr7_2:82527289-82527308 Msa1082410:intron 25.0%
! TTCACTTACAAAATAGATGA+GGG + chr7_2:82527290-82527309 Msa1082410:intron 25.0%
! CAGTTACAGAAAAAATGAAT+AGG - chr7_2:82527335-82527354 None:intergenic 25.0%
GTAAAGAGTAAAAGTCTAGT+GGG - chr7_2:82524055-82524074 None:intergenic 30.0%
TGTAAAGAGTAAAAGTCTAG+TGG - chr7_2:82524056-82524075 None:intergenic 30.0%
GTCAATGAATGAACAGTTAA+AGG - chr7_2:82524181-82524200 None:intergenic 30.0%
AGACGGTTATCTATTAAAGA+TGG - chr7_2:82524232-82524251 None:intergenic 30.0%
! GTTTTCTATAGCTTCAGATT+TGG - chr7_2:82524284-82524303 None:intergenic 30.0%
! GTGATTTAACAAAAGGGTAT+TGG + chr7_2:82524446-82524465 Msa1082410:CDS 30.0%
CAAGAATCTCTAGCATAAAT+AGG - chr7_2:82524490-82524509 None:intergenic 30.0%
! TCTTGTCCTTTTATAGATGA+AGG + chr7_2:82524505-82524524 Msa1082410:CDS 30.0%
TGGATAGAAACTTTACTAAG+TGG + chr7_2:82524554-82524573 Msa1082410:CDS 30.0%
TTGCAATTGTAGTTATGCTT+AGG + chr7_2:82524671-82524690 Msa1082410:intron 30.0%
!! GCTGTTTTCATAAGCTATTT+TGG + chr7_2:82524774-82524793 Msa1082410:intron 30.0%
CAACGAAATACATCCTTATT+TGG - chr7_2:82524915-82524934 None:intergenic 30.0%
CAAATAAGGATGTATTTCGT+TGG + chr7_2:82524913-82524932 Msa1082410:intron 30.0%
ATGTATTTCGTTGGTCAATT+TGG + chr7_2:82524922-82524941 Msa1082410:intron 30.0%
GTTCAATGCAACAAAAATGT+TGG + chr7_2:82525241-82525260 Msa1082410:CDS 30.0%
TGGAGTTTATAAGAGGAAAA+AGG + chr7_2:82525261-82525280 Msa1082410:CDS 30.0%
ATTCCATTAATAGGAACCAA+TGG + chr7_2:82525300-82525319 Msa1082410:CDS 30.0%
TTCCATTAATAGGAACCAAT+GGG + chr7_2:82525301-82525320 Msa1082410:CDS 30.0%
ACAAATCGACAAAAAGTTCA+CGG - chr7_2:82525758-82525777 None:intergenic 30.0%
TGTAGAGTTATGTTCAAGAA+AGG + chr7_2:82525828-82525847 Msa1082410:intron 30.0%
GTACTTGAAATTGTAAGTTG+CGG - chr7_2:82526109-82526128 None:intergenic 30.0%
!! TGATATTGTAAGGTGTTGTT+AGG - chr7_2:82526164-82526183 None:intergenic 30.0%
AACAACACCTTACAATATCA+AGG + chr7_2:82526164-82526183 Msa1082410:intron 30.0%
TTCTAGTCCTTGATATTGTA+AGG - chr7_2:82526174-82526193 None:intergenic 30.0%
TATTCTATATATTGGGGTTG+GGG + chr7_2:82526248-82526267 Msa1082410:intron 30.0%
AAAAAAAACCCAGAGAAAGT+TGG + chr7_2:82526301-82526320 Msa1082410:intron 30.0%
TAAACAAAAGCTTGGTACTT+AGG - chr7_2:82526369-82526388 None:intergenic 30.0%
TGAACTTCGAAAGAAAACTT+GGG - chr7_2:82526671-82526690 None:intergenic 30.0%
! ATAACAAAACCGTTGGATTT+TGG - chr7_2:82526749-82526768 None:intergenic 30.0%
!!! AAATCCAACGGTTTTGTTAT+TGG + chr7_2:82526749-82526768 Msa1082410:intron 30.0%
TATTCCAATAACAAAACCGT+TGG - chr7_2:82526756-82526775 None:intergenic 30.0%
!!! TTTTTTGACAACAATCCAAG+TGG + chr7_2:82526792-82526811 Msa1082410:intron 30.0%
! AGATGGTTAATGGATATATC+AGG - chr7_2:82526856-82526875 None:intergenic 30.0%
CTCAGGATAAATGGTATTTA+AGG - chr7_2:82527074-82527093 None:intergenic 30.0%
AGTTATATTCAACCATGTCA+CGG - chr7_2:82527140-82527159 None:intergenic 30.0%
! TTGTCAGAATTTAGGATAGA+TGG + chr7_2:82527163-82527182 Msa1082410:CDS 30.0%
! TTTTTCTCCCATAAATGGAT+GGG - chr7_2:82527192-82527211 None:intergenic 30.0%
! TTGTGTTTTTCTCCCATAAA+TGG - chr7_2:82527197-82527216 None:intergenic 30.0%
ACTACAATCTTGAATTCTTG+AGG - chr7_2:82527221-82527240 None:intergenic 30.0%
GAATTCAAGATTGTAGTCAT+TGG + chr7_2:82527224-82527243 Msa1082410:CDS 30.0%
! CATTCATTTTCATGAACTAG+TGG - chr7_2:82527378-82527397 None:intergenic 30.0%
GTTCATGCACGATTTGATAA+TGG - chr7_2:82523926-82523945 None:intergenic 35.0%
! GTTTGCTACAAACAAGTCAA+TGG - chr7_2:82523980-82523999 None:intergenic 35.0%
GAAAGATGAAAGGAAGAAGA+TGG - chr7_2:82524095-82524114 None:intergenic 35.0%
TCCTTTCATCTTTCACTATC+TGG + chr7_2:82524101-82524120 Msa1082410:CDS 35.0%
AGATTTACAGAGACAGTGTT+TGG - chr7_2:82524154-82524173 None:intergenic 35.0%
!!! TCTTTTGGCTTCTAGAAAGA+CGG - chr7_2:82524249-82524268 None:intergenic 35.0%
AGAAGCCAAAAGAATGTTTC+AGG + chr7_2:82524256-82524275 Msa1082410:CDS 35.0%
! TGGATCCTGAAACATTCTTT+TGG - chr7_2:82524264-82524283 None:intergenic 35.0%
GCTATAGAAAACAACCATGT+TGG + chr7_2:82524292-82524311 Msa1082410:CDS 35.0%
AATGCATGGTAATAGAGCAA+AGG + chr7_2:82524342-82524361 Msa1082410:CDS 35.0%
!!! AGATGAAGGTTTTGATTGTG+AGG + chr7_2:82524519-82524538 Msa1082410:CDS 35.0%
!!! GATGAAGGTTTTGATTGTGA+GGG + chr7_2:82524520-82524539 Msa1082410:CDS 35.0%
!!! ATGAAGGTTTTGATTGTGAG+GGG + chr7_2:82524521-82524540 Msa1082410:CDS 35.0%
GAAACTTTACTAAGTGGAGA+TGG + chr7_2:82524560-82524579 Msa1082410:CDS 35.0%
ACATCCAAGAACTATAGTGA+CGG + chr7_2:82525106-82525125 Msa1082410:intron 35.0%
!!! AGGAAAAAGGCTAGTTTTTG+TGG + chr7_2:82525274-82525293 Msa1082410:CDS 35.0%
!!! GGAAAAAGGCTAGTTTTTGT+GGG + chr7_2:82525275-82525294 Msa1082410:CDS 35.0%
TTGTGGGTGATTCCATTAAT+AGG + chr7_2:82525291-82525310 Msa1082410:CDS 35.0%
!! TTCCCATTGGTTCCTATTAA+TGG - chr7_2:82525306-82525325 None:intergenic 35.0%
AGGAAAATTACCAAAGAGAG+AGG + chr7_2:82525389-82525408 Msa1082410:CDS 35.0%
GGAAAATTACCAAAGAGAGA+GGG + chr7_2:82525390-82525409 Msa1082410:CDS 35.0%
!! GAACTATAGTTTCAGGTTTC+TGG + chr7_2:82525412-82525431 Msa1082410:CDS 35.0%
TGTTCTTTCTGCAACTTTGT+AGG + chr7_2:82525507-82525526 Msa1082410:intron 35.0%
ATGAAAGCAAAGCAAGAGTA+GGG + chr7_2:82525575-82525594 Msa1082410:CDS 35.0%
CTTTGTCTGCAAGATACTTA+AGG - chr7_2:82526220-82526239 None:intergenic 35.0%
AGTATCTTGCAGACAAAGAA+AGG + chr7_2:82526222-82526241 Msa1082410:intron 35.0%
ATCAAACTTCGTATTCCTGT+GGG - chr7_2:82526491-82526510 None:intergenic 35.0%
AATCAAACTTCGTATTCCTG+TGG - chr7_2:82526492-82526511 None:intergenic 35.0%
CTAACATGTGATCGTATAAC+AGG + chr7_2:82526527-82526546 Msa1082410:intron 35.0%
AAGCTGTAGAAACATTTAGC+CGG - chr7_2:82526588-82526607 None:intergenic 35.0%
TTTCGAAAGCTATGATGACT+TGG + chr7_2:82526608-82526627 Msa1082410:CDS 35.0%
TTCGAAAGCTATGATGACTT+GGG + chr7_2:82526609-82526628 Msa1082410:CDS 35.0%
CTGAACTTCGAAAGAAAACT+TGG - chr7_2:82526672-82526691 None:intergenic 35.0%
GAAACAAACCTGAAATGAGA+TGG - chr7_2:82526697-82526716 None:intergenic 35.0%
! ATCCACTCTGCAATAGTTTT+AGG + chr7_2:82526721-82526740 Msa1082410:intron 35.0%
! TTTTAGGCTCCAAAATCCAA+CGG + chr7_2:82526737-82526756 Msa1082410:intron 35.0%
! TTTGAAATGCTTTGACCACT+TGG - chr7_2:82526810-82526829 None:intergenic 35.0%
TCCATTAACCATCTACTGAA+CGG + chr7_2:82526862-82526881 Msa1082410:intron 35.0%
GATTAATTCCGTTCAGTAGA+TGG - chr7_2:82526873-82526892 None:intergenic 35.0%
!!! TTTTTTCACGACAATCCAAG+TGG - chr7_2:82526916-82526935 None:intergenic 35.0%
! ATCAGAGTCGCTAACTATTT+TGG - chr7_2:82526978-82526997 None:intergenic 35.0%
GTTATATTCAACCATGTCAC+GGG - chr7_2:82527139-82527158 None:intergenic 35.0%
! GTTTTTCTCCCATAAATGGA+TGG - chr7_2:82527193-82527212 None:intergenic 35.0%
AACAACTCATTCCATACATC+TGG - chr7_2:82527265-82527284 None:intergenic 35.0%
GAAGAATAAGGAAGTTGCAG+AGG - chr7_2:82523904-82523923 None:intergenic 40.0%
GCCAGATAGTGAAAGATGAA+AGG - chr7_2:82524105-82524124 None:intergenic 40.0%
! TGAAGGTGTAGTGGTTGATT+TGG - chr7_2:82524131-82524150 None:intergenic 40.0%
!!! TTGTAGAGTGAAGTTTTGGG+TGG - chr7_2:82524203-82524222 None:intergenic 40.0%
CTTGGAAGGTCACAATCTTT+GGG - chr7_2:82524589-82524608 None:intergenic 40.0%
GAATTTGAGAGAGACTACCT+TGG - chr7_2:82524607-82524626 None:intergenic 40.0%
!! AGTTATGCTTAGGCCTTGTT+TGG + chr7_2:82524681-82524700 Msa1082410:intron 40.0%
GTTACCGTCACTATAGTTCT+TGG - chr7_2:82525113-82525132 None:intergenic 40.0%
GGAGTTGCAAAAGTGAAGTT+AGG + chr7_2:82525168-82525187 Msa1082410:intron 40.0%
!! TGCACAACATTGATTCCCAT+TGG - chr7_2:82525319-82525338 None:intergenic 40.0%
! AGATCCAAAGAGAGTGTATG+AGG + chr7_2:82525358-82525377 Msa1082410:CDS 40.0%
ACTATAGTTCCCTCTCTCTT+TGG - chr7_2:82525402-82525421 None:intergenic 40.0%
AGAGAGGGAACTATAGTTTC+AGG + chr7_2:82525405-82525424 Msa1082410:CDS 40.0%
CATGAAAGCAAAGCAAGAGT+AGG + chr7_2:82525574-82525593 Msa1082410:CDS 40.0%
ATCGCATCAATTCGCAAAGT+TGG - chr7_2:82525613-82525632 None:intergenic 40.0%
CGAATTGATGCGATTGATCA+TGG + chr7_2:82525619-82525638 Msa1082410:CDS 40.0%
TTGATCATGGTTCGTCAAGA+TGG + chr7_2:82525632-82525651 Msa1082410:CDS 40.0%
! ATGGAGAGGAGCTGATATTT+TGG + chr7_2:82525651-82525670 Msa1082410:CDS 40.0%
! TGGTTTTCAACACAGCACAT+TGG + chr7_2:82525671-82525690 Msa1082410:CDS 40.0%
! TTTTCAACACAGCACATTGG+TGG + chr7_2:82525674-82525693 Msa1082410:CDS 40.0%
TCACATCACAAAACCAAAGC+TGG + chr7_2:82525697-82525716 Msa1082410:CDS 40.0%
CACATCACAAAACCAAAGCT+GGG + chr7_2:82525698-82525717 Msa1082410:CDS 40.0%
! GCATTTGAGGTTAAGACTTG+AGG - chr7_2:82525920-82525939 None:intergenic 40.0%
TGCTACCATAAAGCAACTTC+TGG - chr7_2:82525946-82525965 None:intergenic 40.0%
TACTCTTCTCAACTAGCATG+TGG + chr7_2:82526415-82526434 Msa1082410:intron 40.0%
AGCTGTAGAAACATTTAGCC+GGG - chr7_2:82526587-82526606 None:intergenic 40.0%
! TATGATGACTTGGGCTTCAT+GGG + chr7_2:82526618-82526637 Msa1082410:CDS 40.0%
AGCCTAAAACTATTGCAGAG+TGG - chr7_2:82526726-82526745 None:intergenic 40.0%
TCCGTTCAGTAGATGGTTAA+TGG - chr7_2:82526866-82526885 None:intergenic 40.0%
CTTAAACCACGTTAACCACT+TGG + chr7_2:82526898-82526917 Msa1082410:intron 40.0%
ACTCTGATACATTCTGCAAC+AGG + chr7_2:82526990-82527009 Msa1082410:intron 40.0%
CTCTGATACATTCTGCAACA+GGG + chr7_2:82526991-82527010 Msa1082410:intron 40.0%
TCTGATACATTCTGCAACAG+GGG + chr7_2:82526992-82527011 Msa1082410:intron 40.0%
GGTTTCATTAAGAGGATGAG+TGG - chr7_2:82527053-82527072 None:intergenic 40.0%
ATGGTCACCCATCCATTTAT+GGG + chr7_2:82527182-82527201 Msa1082410:CDS 40.0%
! AGTGTTTGGTGAAGGTGTAG+TGG - chr7_2:82524140-82524159 None:intergenic 45.0%
! ACAGAGACAGTGTTTGGTGA+AGG - chr7_2:82524148-82524167 None:intergenic 45.0%
CACTTGAAGTAGCACCAACA+TGG - chr7_2:82524309-82524328 None:intergenic 45.0%
!!! GGTTTTGATTGTGAGGGGAA+TGG + chr7_2:82524526-82524545 Msa1082410:CDS 45.0%
TTGTGAGGGGAATGGAAGAT+TGG + chr7_2:82524534-82524553 Msa1082410:CDS 45.0%
CCTTGGAAGGTCACAATCTT+TGG - chr7_2:82524590-82524609 None:intergenic 45.0%
CCAAAGATTGTGACCTTCCA+AGG + chr7_2:82524587-82524606 Msa1082410:CDS 45.0%
TTGAGAGAGACTACCTTGGA+AGG - chr7_2:82524603-82524622 None:intergenic 45.0%
CAACTTCTGGACTGCATTTG+AGG - chr7_2:82525933-82525952 None:intergenic 45.0%
! GCAGTCCAGAAGTTGCTTTA+TGG + chr7_2:82525938-82525957 Msa1082410:intron 45.0%
AGCACATGCCAACTTTCTCT+GGG - chr7_2:82526312-82526331 None:intergenic 45.0%
ACTAGCATGTGGTTGATCAC+TGG + chr7_2:82526426-82526445 Msa1082410:intron 45.0%
ATCACTGGATTTAGCGCAAG+TGG + chr7_2:82526441-82526460 Msa1082410:intron 45.0%
AGTGTGTTTAAGTGTCCCAC+AGG + chr7_2:82526473-82526492 Msa1082410:intron 45.0%
! AAGGAACTCTAGTTCATCCC+CGG + chr7_2:82526566-82526585 Msa1082410:CDS 45.0%
GCTGTAGAAACATTTAGCCG+GGG - chr7_2:82526586-82526605 None:intergenic 45.0%
! CTATGATGACTTGGGCTTCA+TGG + chr7_2:82526617-82526636 Msa1082410:CDS 45.0%
GTTCAGCACCATCTCATTTC+AGG + chr7_2:82526686-82526705 Msa1082410:CDS 45.0%
GACAATCCAAGTGGTTAACG+TGG - chr7_2:82526907-82526926 None:intergenic 45.0%
AGATGAAAACTCCCGTGACA+TGG + chr7_2:82527125-82527144 Msa1082410:CDS 45.0%
GATGGTCACCCATCCATTTA+TGG + chr7_2:82527181-82527200 Msa1082410:CDS 45.0%
! TGTAGTCATTGGTGTCTTCC+AGG + chr7_2:82527235-82527254 Msa1082410:CDS 45.0%
! GTAGTCATTGGTGTCTTCCA+GGG + chr7_2:82527236-82527255 Msa1082410:CDS 45.0%
! TAGTCATTGGTGTCTTCCAG+GGG + chr7_2:82527237-82527256 Msa1082410:CDS 45.0%
CGTGCCTCATACACTCTCTT+TGG - chr7_2:82525365-82525384 None:intergenic 50.0%
! AAGAGAGTGTATGAGGCACG+TGG + chr7_2:82525365-82525384 Msa1082410:CDS 50.0%
CATGGTTCGTCAAGATGGAG+AGG + chr7_2:82525637-82525656 Msa1082410:CDS 50.0%
!! GAGAAGTGCTAACCCAGCTT+TGG - chr7_2:82525713-82525732 None:intergenic 50.0%
CAGCACATGCCAACTTTCTC+TGG - chr7_2:82526313-82526332 None:intergenic 50.0%
GATACATTCTGCAACAGGGG+AGG + chr7_2:82526995-82527014 Msa1082410:intron 50.0%
TCTGCAACAGGGGAGGTAAT+TGG + chr7_2:82527002-82527021 Msa1082410:intron 50.0%
AGGGGAGGTAATTGGAACTC+AGG + chr7_2:82527010-82527029 Msa1082410:intron 50.0%
GGAGGTAATTGGAACTCAGG+AGG + chr7_2:82527013-82527032 Msa1082410:CDS 50.0%
CTCAGGAGGACATTGTACAG+AGG + chr7_2:82527027-82527046 Msa1082410:CDS 50.0%
TTCCAGGGGTTCCAGATGTA+TGG + chr7_2:82527251-82527270 Msa1082410:intron 50.0%
! TTCCATACATCTGGAACCCC+TGG - chr7_2:82527256-82527275 None:intergenic 50.0%
GAGTGTATGAGGCACGTGGA+AGG + chr7_2:82525369-82525388 Msa1082410:CDS 55.0%
! GATGACTTGGGCTTCATGGG+TGG + chr7_2:82526621-82526640 Msa1082410:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 82523894 82527462 82523894 ID=Msa1082410;Name=Msa1082410
chr7_2 mRNA 82523894 82527462 82523894 ID=Msa1082410-mRNA-1;Parent=Msa1082410;Name=Msa1082410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=128|0.8|0.66|0.83|1|1|6|0|475
chr7_2 exon 82523894 82524608 82523894 ID=Msa1082410-mRNA-1:exon:21379;Parent=Msa1082410-mRNA-1
chr7_2 exon 82525241 82525433 82525241 ID=Msa1082410-mRNA-1:exon:21380;Parent=Msa1082410-mRNA-1
chr7_2 exon 82525529 82525719 82525529 ID=Msa1082410-mRNA-1:exon:21381;Parent=Msa1082410-mRNA-1
chr7_2 exon 82526549 82526707 82526549 ID=Msa1082410-mRNA-1:exon:21382;Parent=Msa1082410-mRNA-1
chr7_2 exon 82527012 82527267 82527012 ID=Msa1082410-mRNA-1:exon:21383;Parent=Msa1082410-mRNA-1
chr7_2 exon 82527421 82527462 82527421 ID=Msa1082410-mRNA-1:exon:21384;Parent=Msa1082410-mRNA-1
chr7_2 five_prime_UTR 82523894 82524021 82523894 ID=Msa1082410-mRNA-1:five_prime_utr;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82524022 82524608 82524022 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82525241 82525433 82525241 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82525529 82525719 82525529 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82526549 82526707 82526549 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82527012 82527267 82527012 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
chr7_2 CDS 82527421 82527462 82527421 ID=Msa1082410-mRNA-1:cds;Parent=Msa1082410-mRNA-1
Gene Sequence

>Msa1082410

ATGGAGAGACAAAGAAGTTTCTCTTTCAAACCCACTAGACTTTTACTCTTTACATTCACACTCTTTTCTTCCATCTTCTTCCTTTCATCTTTCACTATCTGGCTCACCAAATCAACCACTACACCTTCACCAAACACTGTCTCTGTAAATCTTCAACCTTTAACTGTTCATTCATTGACCACCCAAAACTTCACTCTACAAAAAATTCCATCTTTAATAGATAACCGTCTTTCTAGAAGCCAAAAGAATGTTTCAGGATCCAAATCTGAAGCTATAGAAAACAACCATGTTGGTGCTACTTCAAGTGTTAATTTTACTTCAATGCATGGTAATAGAGCAAAGGTTGAAGTGAGTGCTTTAGTGAGTAATAAGAGTAAAGTTTTGATTTTTAAGAAGGTTGAGGTGAAGAAGATAGTAAAAGAGTGTGATTTAACAAAAGGGTATTGGGTTTTTGATGAAAGTTATCCTATTTATGCTAGAGATTCTTGTCCTTTTATAGATGAAGGTTTTGATTGTGAGGGGAATGGAAGATTGGATAGAAACTTTACTAAGTGGAGATGGCAACCCAAAGATTGTGACCTTCCAAGGTTCAATGCAACAAAAATGTTGGAGTTTATAAGAGGAAAAAGGCTAGTTTTTGTGGGTGATTCCATTAATAGGAACCAATGGGAATCAATGTTGTGCATGTTATTGAGTGCTGTTAAAGATCCAAAGAGAGTGTATGAGGCACGTGGAAGGAAAATTACCAAAGAGAGAGGGAACTATAGTTTCAGGTTTCTGGACTATCAATGTACAGTTGAATACTATGTGAGTCATTTCTTAGTTCATGAAAGCAAAGCAAGAGTAGGGCAGAAACGAAGACCAACTTTGCGAATTGATGCGATTGATCATGGTTCGTCAAGATGGAGAGGAGCTGATATTTTGGTTTTCAACACAGCACATTGGTGGTCACATCACAAAACCAAAGCTGGGATTTATTACTATCAAGAAGGAACTCTAGTTCATCCCCGGCTAAATGTTTCTACAGCTTTTTCGAAAGCTATGATGACTTGGGCTTCATGGGTGGACAAACACATAAATTCTAAGAAAACCCAAGTTTTCTTTCGAAGTTCAGCACCATCTCATTTCAGGGGAGGTAATTGGAACTCAGGAGGACATTGTACAGAGGCCACTCATCCTCTTAATGAAACCTTAAATACCATTTATCCTGAGAAGAATATAATCATAGAAGAGACAGTAAAGCAGATGAAAACTCCCGTGACATGGTTGAATATAACTAGTTTGTCAGAATTTAGGATAGATGGTCACCCATCCATTTATGGGAGAAAAACACAATCCTCAAGAATTCAAGATTGTAGTCATTGGTGTCTTCCAGGGGTTCCAGATCATAATGCAATTGCAGATAACCTTAATGCGAAGCAAGACTAG

Protein sequence

>Msa1082410

MERQRSFSFKPTRLLLFTFTLFSSIFFLSSFTIWLTKSTTTPSPNTVSVNLQPLTVHSLTTQNFTLQKIPSLIDNRLSRSQKNVSGSKSEAIENNHVGATSSVNFTSMHGNRAKVEVSALVSNKSKVLIFKKVEVKKIVKECDLTKGYWVFDESYPIYARDSCPFIDEGFDCEGNGRLDRNFTKWRWQPKDCDLPRFNATKMLEFIRGKRLVFVGDSINRNQWESMLCMLLSAVKDPKRVYEARGRKITKERGNYSFRFLDYQCTVEYYVSHFLVHESKARVGQKRRPTLRIDAIDHGSSRWRGADILVFNTAHWWSHHKTKAGIYYYQEGTLVHPRLNVSTAFSKAMMTWASWVDKHINSKKTQVFFRSSAPSHFRGGNWNSGGHCTEATHPLNETLNTIYPEKNIIIEETVKQMKTPVTWLNITSLSEFRIDGHPSIYGRKTQSSRIQDCSHWCLPGVPDHNAIADNLNAKQD*