Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380320 | XP_013450234.1 | 95.828 | 743 | 29 | 2 | 1 | 742 | 1 | 742 | 0.0 | 1430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380320 | A0A072U3F5 | 95.828 | 743 | 29 | 2 | 1 | 742 | 1 | 742 | 0.0 | 1430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1080880 | Msa1380320 | 0.995436 | 3.029163e-216 | -8.615850e-47 |
| Msa1082410 | Msa1380320 | 0.818769 | 1.648606e-52 | -8.615850e-47 |
| Msa1119020 | Msa1380320 | 0.934161 | 6.193428e-96 | -8.615850e-47 |
| Msa1131930 | Msa1380320 | 0.959431 | 1.957253e-117 | -8.615850e-47 |
| Msa1166740 | Msa1380320 | 0.874880 | 4.778056e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380320 | MtrunA17_Chr7g0267631 | 95.828 | 743 | 29 | 2 | 1 | 742 | 1 | 742 | 0.0 | 1430 |
| Msa1380320 | MtrunA17_Chr1g0176961 | 59.073 | 777 | 259 | 17 | 1 | 742 | 1 | 753 | 0.0 | 845 |
| Msa1380320 | MtrunA17_Chr3g0137731 | 48.684 | 304 | 124 | 6 | 408 | 708 | 323 | 597 | 1.34e-81 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380320 | AT3G11760.1 | 52.639 | 758 | 246 | 23 | 1 | 709 | 1 | 694 | 0.0 | 682 |
| Msa1380320 | AT5G04860.1 | 44.403 | 795 | 349 | 27 | 1 | 737 | 1 | 760 | 1.41e-177 | 528 |
| Msa1380320 | AT5G04860.2 | 47.209 | 627 | 267 | 20 | 150 | 737 | 8 | 609 | 4.13e-150 | 452 |
| Msa1380320 | AT2G10560.1 | 50.187 | 267 | 107 | 9 | 484 | 736 | 3 | 257 | 8.21e-68 | 225 |
| Msa1380320 | AT2G25460.2 | 44.300 | 307 | 122 | 4 | 408 | 711 | 282 | 542 | 1.24e-65 | 228 |
| Msa1380320 | AT2G25460.1 | 51.748 | 143 | 63 | 2 | 408 | 549 | 282 | 419 | 4.04e-29 | 121 |
Find 159 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAGCGCTTCAGATTAAA+TGG | 0.216187 | tig0020342:-39022 | Msa1380320:CDS |
| CAATGTCTTTCGACAACATT+TGG | 0.231091 | tig0020342:-36478 | Msa1380320:CDS |
| TCACAGAATTTGTATCTTCT+AGG | 0.236134 | tig0020342:-37637 | Msa1380320:CDS |
| CTTTCCTCGTCCATTCCTTC+TGG | 0.245300 | tig0020342:+36521 | None:intergenic |
| GTTGGGAATTCATTCCATTA+TGG | 0.256333 | tig0020342:-37470 | Msa1380320:CDS |
| TCAATTGATCAGACCAGTTT+TGG | 0.293862 | tig0020342:-37991 | Msa1380320:CDS |
| TTTGCACTTTGTGAGAAATA+AGG | 0.301603 | tig0020342:+37293 | None:intergenic |
| GACTGTCGAACTGGGACTTT+AGG | 0.304229 | tig0020342:+36702 | None:intergenic |
| TTTGAAGAAGATTGACGTAT+AGG | 0.315711 | tig0020342:+39044 | None:intergenic |
| ATGGAGGAAGAGGAAGTTTA+GGG | 0.329597 | tig0020342:-37255 | Msa1380320:CDS |
| GTTCCTGGCAAATCCTTCAT+TGG | 0.348050 | tig0020342:-36554 | Msa1380320:CDS |
| TACTACATCATTGACACATT+GGG | 0.351009 | tig0020342:-36347 | Msa1380320:CDS |
| ACTGTCGAACTGGGACTTTA+GGG | 0.351450 | tig0020342:+36703 | None:intergenic |
| CATGGAGGAAGAGGAAGTTT+AGG | 0.356353 | tig0020342:-37256 | Msa1380320:CDS |
| CTCGAATTAGACTGTCGAAC+TGG | 0.358791 | tig0020342:+36693 | None:intergenic |
| CGTCCGCTCTCTGTTGTTCC+TGG | 0.365341 | tig0020342:-36569 | Msa1380320:CDS |
| TTCATTCCATTATGGAACTT+TGG | 0.376536 | tig0020342:-37462 | Msa1380320:CDS |
| GCATGAAATCATGATAGTTC+TGG | 0.391849 | tig0020342:+36726 | None:intergenic |
| GTAGTGGTAGCAAGTATTCT+AGG | 0.392435 | tig0020342:-37580 | Msa1380320:CDS |
| CAGAGGCCAAAGTTCCATAA+TGG | 0.393125 | tig0020342:+37456 | None:intergenic |
| TATGTTTGTTGTTGGGAGTT+GGG | 0.393335 | tig0020342:-36888 | Msa1380320:CDS |
| TGGAATGTTCAAACCAAAAC+TGG | 0.397341 | tig0020342:+37978 | None:intergenic |
| AATTCCCATCAGAGAGTTGC+AGG | 0.397783 | tig0020342:-36054 | Msa1380320:CDS |
| AGAGTACATCAAAAGCTTCT+TGG | 0.399472 | tig0020342:-36081 | Msa1380320:CDS |
| AACTATTGCATGCCTGATGC+TGG | 0.399535 | tig0020342:-37356 | Msa1380320:CDS |
| TGATGCTGGGCGTTCGCATA+TGG | 0.400316 | tig0020342:-37342 | Msa1380320:CDS |
| ATGTAATTGTAGGGATTCAA+TGG | 0.409783 | tig0020342:-38078 | Msa1380320:intron |
| GTTCACTAGTTTCACAAGAC+TGG | 0.409902 | tig0020342:-36941 | Msa1380320:intron |
| ATATGTTTGTTGTTGGGAGT+TGG | 0.412413 | tig0020342:-36889 | Msa1380320:CDS |
| TCTAGATCAAAATGCCCATC+AGG | 0.415438 | tig0020342:+36614 | None:intergenic |
| CATCATCTTTGTAATCTCAA+TGG | 0.419230 | tig0020342:-38873 | Msa1380320:CDS |
| AAGCCGCCTAAAGAAGTTAT+CGG | 0.423411 | tig0020342:-36170 | Msa1380320:CDS |
| TTGTGATGACAAAGACATTT+GGG | 0.430469 | tig0020342:-37387 | Msa1380320:CDS |
| AACATTCCACTCACAAATCC+TGG | 0.431727 | tig0020342:-37964 | Msa1380320:CDS |
| TTGTTGCCGTAATTGCTGAT+TGG | 0.432647 | tig0020342:-36751 | Msa1380320:CDS |
| ATTGTGATGACAAAGACATT+TGG | 0.437795 | tig0020342:-37388 | Msa1380320:CDS |
| GGAGATGATATGTTTGTTGT+TGG | 0.447708 | tig0020342:-36896 | Msa1380320:CDS |
| GATACGCCAATCTCTGAATT+CGG | 0.451330 | tig0020342:-36917 | Msa1380320:CDS |
| AAGGCGGGCCGTGGAGAAGA+AGG | 0.457027 | tig0020342:-37605 | Msa1380320:CDS |
| CTGGAACCAATCAGCAATTA+CGG | 0.458400 | tig0020342:+36745 | None:intergenic |
| CTTAATGTAAAGAAACTCAT+TGG | 0.458855 | tig0020342:-39074 | Msa1380320:CDS |
| ACTTTGGCCTCTGCAAATGC+TGG | 0.460442 | tig0020342:-37446 | Msa1380320:CDS |
| AATGTCTTTCGACAACATTT+GGG | 0.464360 | tig0020342:-36477 | Msa1380320:CDS |
| GAGATGATATGTTTGTTGTT+GGG | 0.466826 | tig0020342:-36895 | Msa1380320:CDS |
| AAGCCGGCCTTAGGAAAGTA+AGG | 0.467172 | tig0020342:-37664 | Msa1380320:CDS |
| TCCTTACCGATAACTTCTTT+AGG | 0.471909 | tig0020342:+36164 | None:intergenic |
| ATATGCGAACGCCCAGCATC+AGG | 0.472606 | tig0020342:+37344 | None:intergenic |
| AGTTCTTACCTTCGAAGAGA+TGG | 0.472634 | tig0020342:+37142 | None:intergenic |
| ATCACAATTCATTCTCGTGT+TGG | 0.485727 | tig0020342:+37403 | None:intergenic |
| GCCATGGTTGCTTCCACCGC+AGG | 0.486435 | tig0020342:+35930 | None:intergenic |
| TTCACTGCGTTGATCAATTG+AGG | 0.487309 | tig0020342:+36805 | None:intergenic |
| GAAATTACAATGACAGAGAA+AGG | 0.488541 | tig0020342:-37704 | Msa1380320:CDS |
| TTCACTAGTTTCACAAGACT+GGG | 0.489487 | tig0020342:-36940 | Msa1380320:intron |
| TAGTGTGTCTGCTGCAGCCA+TGG | 0.489598 | tig0020342:+35914 | None:intergenic |
| GAATACGACCACGTTTCTGC+TGG | 0.496760 | tig0020342:-38924 | Msa1380320:CDS |
| CAACGCAGTGAACGCGCGGC+GGG | 0.497040 | tig0020342:-36794 | Msa1380320:CDS |
| ATCAGCCTGCAACTCTCTGA+TGG | 0.499347 | tig0020342:+36049 | None:intergenic |
| AAATCAGAAAAGGCGGGCCG+TGG | 0.509759 | tig0020342:-37614 | Msa1380320:CDS |
| AATGCAGATATCAATTAGCT+TGG | 0.510003 | tig0020342:-37789 | Msa1380320:intron |
| TCATCTCCGAATTCAGAGAT+TGG | 0.510194 | tig0020342:+36911 | None:intergenic |
| GCATACTTCCATGGAGGAAG+AGG | 0.512733 | tig0020342:-37265 | Msa1380320:CDS |
| AAACCTTACTTTCCTAAGGC+CGG | 0.513408 | tig0020342:+37661 | None:intergenic |
| TTGGTGACGAGTGGCGGCCA+TGG | 0.513831 | tig0020342:+39113 | None:intergenic |
| CAATGTCTTGTTTCATCCGT+GGG | 0.515075 | tig0020342:-38838 | Msa1380320:CDS |
| TGTAGAAATCGGTTCCCTGA+TGG | 0.515160 | tig0020342:-36629 | Msa1380320:CDS |
| TTTCACAAGAGAGGCTGTCA+TGG | 0.515952 | tig0020342:-38946 | Msa1380320:CDS |
| ATCAGGGAACCGATTTCTAC+AGG | 0.520123 | tig0020342:+36631 | None:intergenic |
| GGGAATGAGGATTCAAGTGT+TGG | 0.520748 | tig0020342:-37488 | Msa1380320:CDS |
| ACAATGAGACCTGTAGAAAT+CGG | 0.521853 | tig0020342:-36640 | Msa1380320:CDS |
| GTAGAAATCGGTTCCCTGAT+GGG | 0.523344 | tig0020342:-36628 | Msa1380320:CDS |
| TTTCTTTCATCCAGAAGGAA+TGG | 0.524452 | tig0020342:-36531 | Msa1380320:CDS |
| CTAAACTTCCTCTTCCTCCA+TGG | 0.527587 | tig0020342:+37257 | None:intergenic |
| TTCGAGAAGGCTCCTCAGAA+TGG | 0.527606 | tig0020342:-36676 | Msa1380320:CDS |
| ATTGGTTTCTTTCATCCAGA+AGG | 0.527618 | tig0020342:-36536 | Msa1380320:CDS |
| TTACTACATCATTGACACAT+TGG | 0.528944 | tig0020342:-36348 | Msa1380320:CDS |
| GCAGATATCAATTAGCTTGG+TGG | 0.531349 | tig0020342:-37786 | Msa1380320:intron |
| GAAGAGGAGGTTGTCTGCAG+AGG | 0.532288 | tig0020342:-36119 | Msa1380320:CDS |
| CGATTTAGAAGATTCAGACC+GGG | 0.534030 | tig0020342:-37510 | Msa1380320:CDS |
| TCTTGTGAAATTTCTTGCGA+CGG | 0.536971 | tig0020342:+38959 | None:intergenic |
| TACAGGTCTCATTGTCGCGT+AGG | 0.541505 | tig0020342:+36648 | None:intergenic |
| GGAATGAGGATTCAAGTGTT+GGG | 0.544126 | tig0020342:-37487 | Msa1380320:CDS |
| TGCGACGGAGCCTCGTCGCA+AGG | 0.545916 | tig0020342:+38974 | None:intergenic |
| GTCCCCACCGTCTTCAGCAT+AGG | 0.550462 | tig0020342:+37211 | None:intergenic |
| ATCTTCTAGGAAATCAGAAA+AGG | 0.550812 | tig0020342:-37624 | Msa1380320:CDS |
| CGTTCCTGTGTCATCACCAT+CGG | 0.552222 | tig0020342:-37738 | Msa1380320:CDS |
| CACTACTTCCTTCTTCTCCA+CGG | 0.552441 | tig0020342:+37597 | None:intergenic |
| AGATGATGAGGTGGCGTCCA+TGG | 0.552992 | tig0020342:-39130 | Msa1380320:CDS |
| ATTTCTTCTGATTGAGCCGA+TGG | 0.553305 | tig0020342:+37722 | None:intergenic |
| AAGAGGAGGTTGTCTGCAGA+GGG | 0.554332 | tig0020342:-36118 | Msa1380320:CDS |
| CGCAAGAAATTTCACAAGAG+AGG | 0.555370 | tig0020342:-38955 | Msa1380320:CDS |
| GATCTTTCTGCAATAAAAGC+CGG | 0.555462 | tig0020342:-37680 | Msa1380320:CDS |
| CACTTGAATCCTCATTCCCC+CGG | 0.560381 | tig0020342:+37492 | None:intergenic |
| GATTGCTGTGCAGAATCTCC+AGG | 0.563505 | tig0020342:+37946 | None:intergenic |
| TCAATTTGTAGTCTTTGATG+AGG | 0.565505 | tig0020342:+35999 | None:intergenic |
| GGTAGCAAGTATTCTAGGAG+TGG | 0.569478 | tig0020342:-37575 | Msa1380320:CDS |
| GCCTAAAGAAGTTATCGGTA+AGG | 0.570571 | tig0020342:-36165 | Msa1380320:CDS |
| ACGATTTAGAAGATTCAGAC+CGG | 0.570676 | tig0020342:-37511 | Msa1380320:CDS |
| ACTATTGCATGCCTGATGCT+GGG | 0.573068 | tig0020342:-37355 | Msa1380320:CDS |
| ACAATGTCTTGTTTCATCCG+TGG | 0.573090 | tig0020342:-38839 | Msa1380320:CDS |
| TCGAATTAGACTGTCGAACT+GGG | 0.575257 | tig0020342:+36694 | None:intergenic |
| TGGATGAAAGAAACCAATGA+AGG | 0.576485 | tig0020342:+36541 | None:intergenic |
| AAACCAATGAAGGATTTGCC+AGG | 0.576669 | tig0020342:+36551 | None:intergenic |
| AAGGAAGAAAGTGTTGACTT+AGG | 0.578642 | tig0020342:+38993 | None:intergenic |
| TGATGAATCCATCTCTTCGA+AGG | 0.579333 | tig0020342:-37150 | Msa1380320:intron |
| TTCTATTGAAGAGCAAGAAG+AGG | 0.579561 | tig0020342:-36135 | Msa1380320:CDS |
| TCCTGCGGTGGAAGCAACCA+TGG | 0.581159 | tig0020342:-35931 | Msa1380320:CDS |
| CAAAGCGCAGCATACTTCCA+TGG | 0.581184 | tig0020342:-37274 | Msa1380320:CDS |
| AAAGAAGTTATCGGTAAGGA+AGG | 0.581404 | tig0020342:-36161 | Msa1380320:CDS |
| AAAGAGATCACTAGCCGCGA+TGG | 0.581709 | tig0020342:-36860 | Msa1380320:CDS |
| GAAAACATGAGGTCCACCAT+TGG | 0.581782 | tig0020342:+36421 | None:intergenic |
| GGAGGTTGTCTGCAGAGGGA+AGG | 0.583123 | tig0020342:-36114 | Msa1380320:CDS |
| TTCTAGGAAATCAGAAAAGG+CGG | 0.583702 | tig0020342:-37621 | Msa1380320:CDS |
| AGGCCTATGCTGAAGACGGT+GGG | 0.586237 | tig0020342:-37214 | Msa1380320:CDS |
| GAAAGATTTGAGTTTCTTCG+CGG | 0.588708 | tig0020342:-36503 | Msa1380320:CDS |
| AATGGACTTACACAGAGTAA+AGG | 0.590140 | tig0020342:+37922 | None:intergenic |
| TATTGAAGAGCAAGAAGAGG+AGG | 0.590253 | tig0020342:-36132 | Msa1380320:CDS |
| GCGCTTCAGATTAAATGGAA+AGG | 0.591516 | tig0020342:-39017 | Msa1380320:CDS |
| TTACCGATAACTTCTTTAGG+CGG | 0.596458 | tig0020342:+36167 | None:intergenic |
| TCAGCCTGCAACTCTCTGAT+GGG | 0.597277 | tig0020342:+36050 | None:intergenic |
| TCTAGGAAATCAGAAAAGGC+GGG | 0.597356 | tig0020342:-37620 | Msa1380320:CDS |
| ACTACATCATTGACACATTG+GGG | 0.597911 | tig0020342:-36346 | Msa1380320:CDS |
| CGTGGAGAAGAAGGAAGTAG+TGG | 0.598459 | tig0020342:-37596 | Msa1380320:CDS |
| GCGTAGGTTTCTCCATTCTG+AGG | 0.601252 | tig0020342:+36664 | None:intergenic |
| AGATTGAAAGCGATTTCCCA+CGG | 0.606573 | tig0020342:+38822 | None:intergenic |
| TGATCAACGCAGTGAACGCG+CGG | 0.615289 | tig0020342:-36798 | Msa1380320:CDS |
| CATCAGGCATGCAATAGTTG+TGG | 0.616829 | tig0020342:+37360 | None:intergenic |
| GGAGTTGTTGTTGATAAACA+AGG | 0.618758 | tig0020342:+35951 | None:intergenic |
| CTGTCGAACTGGGACTTTAG+GGG | 0.621458 | tig0020342:+36704 | None:intergenic |
| GAACATGAGTGTCTCACCAA+TGG | 0.622666 | tig0020342:-36437 | Msa1380320:CDS |
| TTGGCCTCTGCAAATGCTGG+AGG | 0.623212 | tig0020342:-37443 | Msa1380320:CDS |
| ACACTTTCTTCCTTGCGACG+AGG | 0.625009 | tig0020342:-38984 | Msa1380320:CDS |
| CAACTCTCTGATGGGAATTG+CGG | 0.626152 | tig0020342:+36058 | None:intergenic |
| ATCAACAACAACTCCTGCGG+TGG | 0.626386 | tig0020342:-35943 | Msa1380320:CDS |
| TAATGGTGGTGAAGATGATG+AGG | 0.627803 | tig0020342:-39142 | Msa1380320:CDS |
| CGACGAAACCAGCAGAAACG+TGG | 0.635377 | tig0020342:+38916 | None:intergenic |
| CATGAGTGTCTCACCAATGG+TGG | 0.635662 | tig0020342:-36434 | Msa1380320:CDS |
| GGCCTATGCTGAAGACGGTG+GGG | 0.638192 | tig0020342:-37213 | Msa1380320:CDS |
| AACATTTGGGACGAGATCAG+TGG | 0.639738 | tig0020342:-36464 | Msa1380320:CDS |
| AAGGCCTATGCTGAAGACGG+TGG | 0.640513 | tig0020342:-37215 | Msa1380320:CDS |
| CAGATTCAGAGCTAAGCTGT+CGG | 0.643095 | tig0020342:+37171 | None:intergenic |
| GATTTAGAAGATTCAGACCG+GGG | 0.648372 | tig0020342:-37509 | Msa1380320:CDS |
| TTCGACAGTCTAATTCGAGA+AGG | 0.648846 | tig0020342:-36689 | Msa1380320:CDS |
| CTAGATCAAAATGCCCATCA+GGG | 0.650970 | tig0020342:+36615 | None:intergenic |
| GAATCTCCAGGATTTGTGAG+TGG | 0.651109 | tig0020342:+37958 | None:intergenic |
| CAACTAACAATGAAAACATG+AGG | 0.651723 | tig0020342:+36410 | None:intergenic |
| TTTATCAACAACAACTCCTG+CGG | 0.662831 | tig0020342:-35946 | Msa1380320:CDS |
| ATAAGGCTCAGAAGAAGACG+TGG | 0.663268 | tig0020342:+37310 | None:intergenic |
| TCATCCAGAAGGAATGGACG+AGG | 0.665308 | tig0020342:-36525 | Msa1380320:CDS |
| TGGTGGTGAAGATGATGAGG+TGG | 0.670788 | tig0020342:-39139 | Msa1380320:CDS |
| TGGAGGAAGAGGAAGTTTAG+GGG | 0.671003 | tig0020342:-37254 | Msa1380320:CDS |
| TTGCCAGGAACAACAGAGAG+CGG | 0.680350 | tig0020342:+36566 | None:intergenic |
| TCAACGCAGTGAACGCGCGG+CGG | 0.681053 | tig0020342:-36795 | Msa1380320:CDS |
| TGATCCTCCAGCATTTGCAG+AGG | 0.682683 | tig0020342:+37439 | None:intergenic |
| TGAGCCGATGGTGATGACAC+AGG | 0.701956 | tig0020342:+37734 | None:intergenic |
| TCACTAGTTTCACAAGACTG+GGG | 0.702314 | tig0020342:-36939 | Msa1380320:intron |
| ATTTAGAAGATTCAGACCGG+GGG | 0.706186 | tig0020342:-37508 | Msa1380320:CDS |
| CTACATCATTGACACATTGG+GGG | 0.708648 | tig0020342:-36345 | Msa1380320:CDS |
| CAAGCTTCATGTGACCATCG+CGG | 0.715114 | tig0020342:+36846 | None:intergenic |
| AGCGCAGCATACTTCCATGG+AGG | 0.725294 | tig0020342:-37271 | Msa1380320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTCATTTTTTTTTAAT+TGG | - | tig0020342:36308-36327 | Msa1380320:CDS | 10.0% |
| !!! | AGATTCATTTTTTTTTAATT+GGG | - | tig0020342:36309-36328 | Msa1380320:CDS | 10.0% |
| !!! | GGATTTTTTAAATAAAATAT+TGG | - | tig0020342:36696-36715 | Msa1380320:CDS | 10.0% |
| !! | TTATATTAGAAAAATCATAA+TGG | + | tig0020342:36788-36807 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAATGTAATTGTA+GGG | - | tig0020342:36937-36956 | Msa1380320:intron | 10.0% |
| !!! | AATCTTTTTTTGTTGATTTT+AGG | - | tig0020342:36349-36368 | Msa1380320:CDS | 15.0% |
| !!! | ATCTTTTTTTGTTGATTTTA+GGG | - | tig0020342:36350-36369 | Msa1380320:CDS | 15.0% |
| !!! | TTTTATTGTTTTTCTTTTGT+TGG | - | tig0020342:36416-36435 | Msa1380320:CDS | 15.0% |
| !!! | TTTATTGTTTTTCTTTTGTT+GGG | - | tig0020342:36417-36436 | Msa1380320:CDS | 15.0% |
| !!! | TTTTTATGTTTCCTAATATT+TGG | - | tig0020342:36514-36533 | Msa1380320:CDS | 15.0% |
| !!! | GTTTTTTTAAATGTAATTGT+AGG | - | tig0020342:36936-36955 | Msa1380320:intron | 15.0% |
| !! | ATAATAAACTATCAACATTA+TGG | - | tig0020342:37160-37179 | Msa1380320:CDS | 15.0% |
| !! | AAAGAAAAAGAAAGAAAAGA+TGG | + | tig0020342:36261-36280 | None:intergenic | 20.0% |
| !! | ACAAAAACAGATCAAATAAA+AGG | + | tig0020342:36495-36514 | None:intergenic | 20.0% |
| !!! | TTTTTATCATTTGATGATTG+AGG | + | tig0020342:38785-38804 | None:intergenic | 20.0% |
| ! | CTTAATGTAAAGAAACTCAT+TGG | - | tig0020342:35950-35969 | Msa1380320:CDS | 25.0% |
| ! | AAACAGATCAAATAAAAGGA+CGG | + | tig0020342:36491-36510 | None:intergenic | 25.0% |
| ! | TTTGACAAAAAAAACGAAGT+AGG | - | tig0020342:36675-36694 | Msa1380320:CDS | 25.0% |
| !!! | TTATTTAATCGGTTAGTTTG+AGG | - | tig0020342:36822-36841 | Msa1380320:CDS | 25.0% |
| ! | ATGACAATAAATTACAAGAG+AGG | + | tig0020342:37136-37155 | None:intergenic | 25.0% |
| !! | CAACTTTGAGAATGAAAAAA+TGG | + | tig0020342:38646-38665 | None:intergenic | 25.0% |
| ! | TCAAATGATAAAAAAGCAAC+TGG | - | tig0020342:38791-38810 | Msa1380320:intron | 25.0% |
| TTTGAAGAAGATTGACGTAT+AGG | + | tig0020342:35983-36002 | None:intergenic | 30.0% | |
| AATTAGCGCTTCAGATTAAA+TGG | - | tig0020342:36002-36021 | Msa1380320:CDS | 30.0% | |
| CATCATCTTTGTAATCTCAA+TGG | - | tig0020342:36151-36170 | Msa1380320:CDS | 30.0% | |
| ! | TTTTCTTTTGTTGGGTTTGT+AGG | - | tig0020342:36425-36444 | Msa1380320:CDS | 30.0% |
| TTGTAGGATGGATGAAAATT+TGG | - | tig0020342:36441-36460 | Msa1380320:CDS | 30.0% | |
| AATTTCCAGGACCAAATATT+AGG | + | tig0020342:36528-36547 | None:intergenic | 30.0% | |
| ! | TGTTGAAGAGAAAGTTGATT+AGG | + | tig0020342:36563-36582 | None:intergenic | 30.0% |
| TCTCTTCAACAATGAAGTTA+AGG | - | tig0020342:36572-36591 | Msa1380320:CDS | 30.0% | |
| GTTAAGGTCATTAATTGAAG+AGG | - | tig0020342:36588-36607 | Msa1380320:CDS | 30.0% | |
| ATGTAATTGTAGGGATTCAA+TGG | - | tig0020342:36946-36965 | Msa1380320:intron | 30.0% | |
| AATGCAGATATCAATTAGCT+TGG | - | tig0020342:37235-37254 | Msa1380320:CDS | 30.0% | |
| GAAATTACAATGACAGAGAA+AGG | - | tig0020342:37320-37339 | Msa1380320:CDS | 30.0% | |
| TGAAAAACCTTACTTTCCTA+AGG | + | tig0020342:37370-37389 | None:intergenic | 30.0% | |
| TCACAGAATTTGTATCTTCT+AGG | - | tig0020342:37387-37406 | Msa1380320:CDS | 30.0% | |
| ! | ATCTTCTAGGAAATCAGAAA+AGG | - | tig0020342:37400-37419 | Msa1380320:CDS | 30.0% |
| TTCATTCCATTATGGAACTT+TGG | - | tig0020342:37562-37581 | Msa1380320:CDS | 30.0% | |
| ATTGTGATGACAAAGACATT+TGG | - | tig0020342:37636-37655 | Msa1380320:CDS | 30.0% | |
| TTGTGATGACAAAGACATTT+GGG | - | tig0020342:37637-37656 | Msa1380320:CDS | 30.0% | |
| TTTGCACTTTGTGAGAAATA+AGG | + | tig0020342:37734-37753 | None:intergenic | 30.0% | |
| !! | GAGATGATATGTTTGTTGTT+GGG | - | tig0020342:38129-38148 | Msa1380320:intron | 30.0% |
| AATGTCTTTCGACAACATTT+GGG | - | tig0020342:38547-38566 | Msa1380320:intron | 30.0% | |
| CAACTAACAATGAAAACATG+AGG | + | tig0020342:38617-38636 | None:intergenic | 30.0% | |
| ! | CTCATGTTTTCATTGTTAGT+TGG | - | tig0020342:38615-38634 | Msa1380320:intron | 30.0% |
| TTACTACATCATTGACACAT+TGG | - | tig0020342:38676-38695 | Msa1380320:intron | 30.0% | |
| TACTACATCATTGACACATT+GGG | - | tig0020342:38677-38696 | Msa1380320:intron | 30.0% | |
| AATGATAAAAAAGCAACTGG+TGG | - | tig0020342:38794-38813 | Msa1380320:intron | 30.0% | |
| TCAATTTGTAGTCTTTGATG+AGG | + | tig0020342:39028-39047 | None:intergenic | 30.0% | |
| !! | AAGGAAGAAAGTGTTGACTT+AGG | + | tig0020342:36034-36053 | None:intergenic | 35.0% |
| TCTTGTGAAATTTCTTGCGA+CGG | + | tig0020342:36068-36087 | None:intergenic | 35.0% | |
| ATTTGGATGATTCTGTGTGT+TGG | - | tig0020342:36458-36477 | Msa1380320:CDS | 35.0% | |
| TTTGGATGATTCTGTGTGTT+GGG | - | tig0020342:36459-36478 | Msa1380320:CDS | 35.0% | |
| TGTTTCCTAATATTTGGTCC+TGG | - | tig0020342:36520-36539 | Msa1380320:CDS | 35.0% | |
| AAGGTCATTAATTGAAGAGG+TGG | - | tig0020342:36591-36610 | Msa1380320:CDS | 35.0% | |
| TTAATTGAAGAGGTGGAGAT+TGG | - | tig0020342:36598-36617 | Msa1380320:CDS | 35.0% | |
| !! | CTTTCCCTTTCAGTTTTATG+CGG | - | tig0020342:36721-36740 | Msa1380320:CDS | 35.0% |
| ACTACCGCATAAAACTGAAA+GGG | + | tig0020342:36728-36747 | None:intergenic | 35.0% | |
| TACTACCGCATAAAACTGAA+AGG | + | tig0020342:36729-36748 | None:intergenic | 35.0% | |
| AATGGAAGCCCAAGAAAAAA+GGG | - | tig0020342:36964-36983 | Msa1380320:intron | 35.0% | |
| !!! | CAACAGTACCCTTTTTTCTT+GGG | + | tig0020342:36975-36994 | None:intergenic | 35.0% |
| !!! | ACAACAGTACCCTTTTTTCT+TGG | + | tig0020342:36976-36995 | None:intergenic | 35.0% |
| !! | AGAAAAAAGGGTACTGTTGT+TGG | - | tig0020342:36976-36995 | Msa1380320:intron | 35.0% |
| ! | TCAATTGATCAGACCAGTTT+TGG | - | tig0020342:37033-37052 | Msa1380320:intron | 35.0% |
| TGGAATGTTCAAACCAAAAC+TGG | + | tig0020342:37049-37068 | None:intergenic | 35.0% | |
| ! | AATGGACTTACACAGAGTAA+AGG | + | tig0020342:37105-37124 | None:intergenic | 35.0% |
| ACAAGAGAGGATTAACTGAA+TGG | + | tig0020342:37123-37142 | None:intergenic | 35.0% | |
| GATCTTTCTGCAATAAAAGC+CGG | - | tig0020342:37344-37363 | Msa1380320:CDS | 35.0% | |
| ! | TTCTAGGAAATCAGAAAAGG+CGG | - | tig0020342:37403-37422 | Msa1380320:CDS | 35.0% |
| ACGATTTAGAAGATTCAGAC+CGG | - | tig0020342:37513-37532 | Msa1380320:CDS | 35.0% | |
| GTTGGGAATTCATTCCATTA+TGG | - | tig0020342:37554-37573 | Msa1380320:CDS | 35.0% | |
| ATCACAATTCATTCTCGTGT+TGG | + | tig0020342:37624-37643 | None:intergenic | 35.0% | |
| !!! | GCATAGGCCTTTTTTAACAA+TGG | + | tig0020342:37800-37819 | None:intergenic | 35.0% |
| ! | TTCACTAGTTTCACAAGACT+GGG | - | tig0020342:38084-38103 | Msa1380320:intron | 35.0% |
| !! | GGAGATGATATGTTTGTTGT+TGG | - | tig0020342:38128-38147 | Msa1380320:intron | 35.0% |
| !! | ATATGTTTGTTGTTGGGAGT+TGG | - | tig0020342:38135-38154 | Msa1380320:intron | 35.0% |
| !! | TATGTTTGTTGTTGGGAGTT+GGG | - | tig0020342:38136-38155 | Msa1380320:intron | 35.0% |
| GCATGAAATCATGATAGTTC+TGG | + | tig0020342:38301-38320 | None:intergenic | 35.0% | |
| ACAATGAGACCTGTAGAAAT+CGG | - | tig0020342:38384-38403 | Msa1380320:intron | 35.0% | |
| TGGATGAAAGAAACCAATGA+AGG | + | tig0020342:38486-38505 | None:intergenic | 35.0% | |
| ! | ATTGGTTTCTTTCATCCAGA+AGG | - | tig0020342:38488-38507 | Msa1380320:intron | 35.0% |
| TTTCTTTCATCCAGAAGGAA+TGG | - | tig0020342:38493-38512 | Msa1380320:intron | 35.0% | |
| ! | GAAAGATTTGAGTTTCTTCG+CGG | - | tig0020342:38521-38540 | Msa1380320:intron | 35.0% |
| CAATGTCTTTCGACAACATT+TGG | - | tig0020342:38546-38565 | Msa1380320:intron | 35.0% | |
| ACTACATCATTGACACATTG+GGG | - | tig0020342:38678-38697 | Msa1380320:intron | 35.0% | |
| !! | CTGTGTTGCTGTCAAATTTT+AGG | + | tig0020342:38739-38758 | None:intergenic | 35.0% |
| TTACCGATAACTTCTTTAGG+CGG | + | tig0020342:38860-38879 | None:intergenic | 35.0% | |
| TCCTTACCGATAACTTCTTT+AGG | + | tig0020342:38863-38882 | None:intergenic | 35.0% | |
| AAAGAAGTTATCGGTAAGGA+AGG | - | tig0020342:38863-38882 | Msa1380320:CDS | 35.0% | |
| TTCTATTGAAGAGCAAGAAG+AGG | - | tig0020342:38889-38908 | Msa1380320:CDS | 35.0% | |
| AGAGTACATCAAAAGCTTCT+TGG | - | tig0020342:38943-38962 | Msa1380320:CDS | 35.0% | |
| ! | GGAGTTGTTGTTGATAAACA+AGG | + | tig0020342:39076-39095 | None:intergenic | 35.0% |
| TTTATCAACAACAACTCCTG+CGG | - | tig0020342:39078-39097 | Msa1380320:CDS | 35.0% | |
| !!! | TGATACTTTTTGGTGACGAG+TGG | + | tig0020342:35923-35942 | None:intergenic | 40.0% |
| !! | TCACCAAAAAGTATCACGTC+AGG | - | tig0020342:35927-35946 | Msa1380320:CDS | 40.0% |
| ! | AAGCCTGACGTGATACTTTT+TGG | + | tig0020342:35933-35952 | None:intergenic | 40.0% |
| GCGCTTCAGATTAAATGGAA+AGG | - | tig0020342:36007-36026 | Msa1380320:CDS | 40.0% | |
| CGCAAGAAATTTCACAAGAG+AGG | - | tig0020342:36069-36088 | Msa1380320:CDS | 40.0% | |
| !! | ACAATGTCTTGTTTCATCCG+TGG | - | tig0020342:36185-36204 | Msa1380320:CDS | 40.0% |
| !! | CAATGTCTTGTTTCATCCGT+GGG | - | tig0020342:36186-36205 | Msa1380320:CDS | 40.0% |
| AGATTGAAAGCGATTTCCCA+CGG | + | tig0020342:36205-36224 | None:intergenic | 40.0% | |
| ! | CTTTTGTTGGGTTTGTAGGA+TGG | - | tig0020342:36429-36448 | Msa1380320:CDS | 40.0% |
| GTGTGACACAACAAATTTCC+AGG | + | tig0020342:36541-36560 | None:intergenic | 40.0% | |
| ! | GCGGTAGTAGTTGACTTATT+TGG | - | tig0020342:36740-36759 | Msa1380320:CDS | 40.0% |
| CAATGGAAGCCCAAGAAAAA+AGG | - | tig0020342:36963-36982 | Msa1380320:intron | 40.0% | |
| AACATTCCACTCACAAATCC+TGG | - | tig0020342:37060-37079 | Msa1380320:intron | 40.0% | |
| ! | GCAGATATCAATTAGCTTGG+TGG | - | tig0020342:37238-37257 | Msa1380320:CDS | 40.0% |
| ATTTCTTCTGATTGAGCCGA+TGG | + | tig0020342:37305-37324 | None:intergenic | 40.0% | |
| AAACCTTACTTTCCTAAGGC+CGG | + | tig0020342:37366-37385 | None:intergenic | 40.0% | |
| TCTAGGAAATCAGAAAAGGC+GGG | - | tig0020342:37404-37423 | Msa1380320:CDS | 40.0% | |
| GTAGTGGTAGCAAGTATTCT+AGG | - | tig0020342:37444-37463 | Msa1380320:CDS | 40.0% | |
| CGATTTAGAAGATTCAGACC+GGG | - | tig0020342:37514-37533 | Msa1380320:CDS | 40.0% | |
| GATTTAGAAGATTCAGACCG+GGG | - | tig0020342:37515-37534 | Msa1380320:CDS | 40.0% | |
| ATTTAGAAGATTCAGACCGG+GGG | - | tig0020342:37516-37535 | Msa1380320:CDS | 40.0% | |
| GGAATGAGGATTCAAGTGTT+GGG | - | tig0020342:37537-37556 | Msa1380320:CDS | 40.0% | |
| ATGGAGGAAGAGGAAGTTTA+GGG | - | tig0020342:37769-37788 | Msa1380320:CDS | 40.0% | |
| GGGAGAGCCATTGTTAAAAA+AGG | - | tig0020342:37790-37809 | Msa1380320:intron | 40.0% | |
| AAAAAGGCCTATGCTGAAGA+CGG | - | tig0020342:37806-37825 | Msa1380320:intron | 40.0% | |
| TGATGAATCCATCTCTTCGA+AGG | - | tig0020342:37874-37893 | Msa1380320:intron | 40.0% | |
| AGTTCTTACCTTCGAAGAGA+TGG | + | tig0020342:37885-37904 | None:intergenic | 40.0% | |
| ! | GTTCACTAGTTTCACAAGAC+TGG | - | tig0020342:38083-38102 | Msa1380320:intron | 40.0% |
| ! | TCACTAGTTTCACAAGACTG+GGG | - | tig0020342:38085-38104 | Msa1380320:intron | 40.0% |
| GATACGCCAATCTCTGAATT+CGG | - | tig0020342:38107-38126 | Msa1380320:intron | 40.0% | |
| TCATCTCCGAATTCAGAGAT+TGG | + | tig0020342:38116-38135 | None:intergenic | 40.0% | |
| ! | TTCACTGCGTTGATCAATTG+AGG | + | tig0020342:38222-38241 | None:intergenic | 40.0% |
| TTGTTGCCGTAATTGCTGAT+TGG | - | tig0020342:38273-38292 | Msa1380320:intron | 40.0% | |
| CTGGAACCAATCAGCAATTA+CGG | + | tig0020342:38282-38301 | None:intergenic | 40.0% | |
| TCGAATTAGACTGTCGAACT+GGG | + | tig0020342:38333-38352 | None:intergenic | 40.0% | |
| TTCGACAGTCTAATTCGAGA+AGG | - | tig0020342:38335-38354 | Msa1380320:intron | 40.0% | |
| CTAGATCAAAATGCCCATCA+GGG | + | tig0020342:38412-38431 | None:intergenic | 40.0% | |
| TCTAGATCAAAATGCCCATC+AGG | + | tig0020342:38413-38432 | None:intergenic | 40.0% | |
| AAACCAATGAAGGATTTGCC+AGG | + | tig0020342:38476-38495 | None:intergenic | 40.0% | |
| CTACATCATTGACACATTGG+GGG | - | tig0020342:38679-38698 | Msa1380320:intron | 40.0% | |
| ATAAAAAAGCAACTGGTGGC+TGG | - | tig0020342:38798-38817 | Msa1380320:intron | 40.0% | |
| AAGCCGCCTAAAGAAGTTAT+CGG | - | tig0020342:38854-38873 | Msa1380320:CDS | 40.0% | |
| GCCTAAAGAAGTTATCGGTA+AGG | - | tig0020342:38859-38878 | Msa1380320:CDS | 40.0% | |
| TATTGAAGAGCAAGAAGAGG+AGG | - | tig0020342:38892-38911 | Msa1380320:CDS | 40.0% | |
| !!! | TACTTTTTGGTGACGAGTGG+CGG | + | tig0020342:35920-35939 | None:intergenic | 45.0% |
| TTTCACAAGAGAGGCTGTCA+TGG | - | tig0020342:36078-36097 | Msa1380320:CDS | 45.0% | |
| GAATCTCCAGGATTTGTGAG+TGG | + | tig0020342:37069-37088 | None:intergenic | 45.0% | |
| CACTACTTCCTTCTTCTCCA+CGG | + | tig0020342:37430-37449 | None:intergenic | 45.0% | |
| ! | GGTAGCAAGTATTCTAGGAG+TGG | - | tig0020342:37449-37468 | Msa1380320:CDS | 45.0% |
| GGGAATGAGGATTCAAGTGT+TGG | - | tig0020342:37536-37555 | Msa1380320:CDS | 45.0% | |
| CAGAGGCCAAAGTTCCATAA+TGG | + | tig0020342:37571-37590 | None:intergenic | 45.0% | |
| CATCAGGCATGCAATAGTTG+TGG | + | tig0020342:37667-37686 | None:intergenic | 45.0% | |
| AACTATTGCATGCCTGATGC+TGG | - | tig0020342:37668-37687 | Msa1380320:CDS | 45.0% | |
| ACTATTGCATGCCTGATGCT+GGG | - | tig0020342:37669-37688 | Msa1380320:CDS | 45.0% | |
| ATAAGGCTCAGAAGAAGACG+TGG | + | tig0020342:37717-37736 | None:intergenic | 45.0% | |
| CTAAACTTCCTCTTCCTCCA+TGG | + | tig0020342:37770-37789 | None:intergenic | 45.0% | |
| CATGGAGGAAGAGGAAGTTT+AGG | - | tig0020342:37768-37787 | Msa1380320:CDS | 45.0% | |
| TGGAGGAAGAGGAAGTTTAG+GGG | - | tig0020342:37770-37789 | Msa1380320:CDS | 45.0% | |
| CAGATTCAGAGCTAAGCTGT+CGG | + | tig0020342:37856-37875 | None:intergenic | 45.0% | |
| ACTGTCGAACTGGGACTTTA+GGG | + | tig0020342:38324-38343 | None:intergenic | 45.0% | |
| CTCGAATTAGACTGTCGAAC+TGG | + | tig0020342:38334-38353 | None:intergenic | 45.0% | |
| ! | ATCAGGGAACCGATTTCTAC+AGG | + | tig0020342:38396-38415 | None:intergenic | 45.0% |
| ! | TGTAGAAATCGGTTCCCTGA+TGG | - | tig0020342:38395-38414 | Msa1380320:intron | 45.0% |
| ! | GTAGAAATCGGTTCCCTGAT+GGG | - | tig0020342:38396-38415 | Msa1380320:intron | 45.0% |
| !! | GCGGACGTATTTTTGCTTCA+AGG | + | tig0020342:38442-38461 | None:intergenic | 45.0% |
| GTTCCTGGCAAATCCTTCAT+TGG | - | tig0020342:38470-38489 | Msa1380320:intron | 45.0% | |
| ! | AACATTTGGGACGAGATCAG+TGG | - | tig0020342:38560-38579 | Msa1380320:intron | 45.0% |
| GAACATGAGTGTCTCACCAA+TGG | - | tig0020342:38587-38606 | Msa1380320:intron | 45.0% | |
| GAAAACATGAGGTCCACCAT+TGG | + | tig0020342:38606-38625 | None:intergenic | 45.0% | |
| CAACTCTCTGATGGGAATTG+CGG | + | tig0020342:38969-38988 | None:intergenic | 45.0% | |
| AATTCCCATCAGAGAGTTGC+AGG | - | tig0020342:38970-38989 | Msa1380320:CDS | 45.0% | |
| !!! | TTTATTTATTGTTATTTAAT+CGG | - | tig0020342:36811-36830 | Msa1380320:CDS | 5.0% |
| ! | TGGTGGTGAAGATGATGAGG+TGG | - | tig0020342:35885-35904 | Msa1380320:CDS | 50.0% |
| ACACTTTCTTCCTTGCGACG+AGG | - | tig0020342:36040-36059 | Msa1380320:CDS | 50.0% | |
| GAATACGACCACGTTTCTGC+TGG | - | tig0020342:36100-36119 | Msa1380320:CDS | 50.0% | |
| GATTGCTGTGCAGAATCTCC+AGG | + | tig0020342:37081-37100 | None:intergenic | 50.0% | |
| CGTTCCTGTGTCATCACCAT+CGG | - | tig0020342:37286-37305 | Msa1380320:CDS | 50.0% | |
| CTGCAATAAAAGCCGGCCTT+AGG | - | tig0020342:37351-37370 | Msa1380320:CDS | 50.0% | |
| AAGCCGGCCTTAGGAAAGTA+AGG | - | tig0020342:37360-37379 | Msa1380320:CDS | 50.0% | |
| CGTGGAGAAGAAGGAAGTAG+TGG | - | tig0020342:37428-37447 | Msa1380320:CDS | 50.0% | |
| CACTTGAATCCTCATTCCCC+CGG | + | tig0020342:37535-37554 | None:intergenic | 50.0% | |
| ACTTTGGCCTCTGCAAATGC+TGG | - | tig0020342:37578-37597 | Msa1380320:CDS | 50.0% | |
| TGATCCTCCAGCATTTGCAG+AGG | + | tig0020342:37588-37607 | None:intergenic | 50.0% | |
| CAAAGCGCAGCATACTTCCA+TGG | - | tig0020342:37750-37769 | Msa1380320:CDS | 50.0% | |
| GCATACTTCCATGGAGGAAG+AGG | - | tig0020342:37759-37778 | Msa1380320:CDS | 50.0% | |
| AAAGAGATCACTAGCCGCGA+TGG | - | tig0020342:38164-38183 | Msa1380320:intron | 50.0% | |
| CAAGCTTCATGTGACCATCG+CGG | + | tig0020342:38181-38200 | None:intergenic | 50.0% | |
| CTGTCGAACTGGGACTTTAG+GGG | + | tig0020342:38323-38342 | None:intergenic | 50.0% | |
| GACTGTCGAACTGGGACTTT+AGG | + | tig0020342:38325-38344 | None:intergenic | 50.0% | |
| TTCGAGAAGGCTCCTCAGAA+TGG | - | tig0020342:38348-38367 | Msa1380320:intron | 50.0% | |
| GCGTAGGTTTCTCCATTCTG+AGG | + | tig0020342:38363-38382 | None:intergenic | 50.0% | |
| TACAGGTCTCATTGTCGCGT+AGG | + | tig0020342:38379-38398 | None:intergenic | 50.0% | |
| TTGCCAGGAACAACAGAGAG+CGG | + | tig0020342:38461-38480 | None:intergenic | 50.0% | |
| TCATCCAGAAGGAATGGACG+AGG | - | tig0020342:38499-38518 | Msa1380320:intron | 50.0% | |
| CTTTCCTCGTCCATTCCTTC+TGG | + | tig0020342:38506-38525 | None:intergenic | 50.0% | |
| CATGAGTGTCTCACCAATGG+TGG | - | tig0020342:38590-38609 | Msa1380320:intron | 50.0% | |
| TCATTGACACATTGGGGGAG+AGG | - | tig0020342:38684-38703 | Msa1380320:intron | 50.0% | |
| AAGAGGAGGTTGTCTGCAGA+GGG | - | tig0020342:38906-38925 | Msa1380320:CDS | 50.0% | |
| TCAGCCTGCAACTCTCTGAT+GGG | + | tig0020342:38977-38996 | None:intergenic | 50.0% | |
| ATCAGCCTGCAACTCTCTGA+TGG | + | tig0020342:38978-38997 | None:intergenic | 50.0% | |
| ATCAACAACAACTCCTGCGG+TGG | - | tig0020342:39081-39100 | Msa1380320:CDS | 50.0% | |
| AGATGATGAGGTGGCGTCCA+TGG | - | tig0020342:35894-35913 | Msa1380320:CDS | 55.0% | |
| CGACGAAACCAGCAGAAACG+TGG | + | tig0020342:36111-36130 | None:intergenic | 55.0% | |
| ! | TGAGCCGATGGTGATGACAC+AGG | + | tig0020342:37293-37312 | None:intergenic | 55.0% |
| AAATCAGAAAAGGCGGGCCG+TGG | - | tig0020342:37410-37429 | Msa1380320:CDS | 55.0% | |
| AGATTCAGACCGGGGGAATG+AGG | - | tig0020342:37523-37542 | Msa1380320:CDS | 55.0% | |
| TTGGCCTCTGCAAATGCTGG+AGG | - | tig0020342:37581-37600 | Msa1380320:CDS | 55.0% | |
| ATATGCGAACGCCCAGCATC+AGG | + | tig0020342:37683-37702 | None:intergenic | 55.0% | |
| TGATGCTGGGCGTTCGCATA+TGG | - | tig0020342:37682-37701 | Msa1380320:CDS | 55.0% | |
| AGCGCAGCATACTTCCATGG+AGG | - | tig0020342:37753-37772 | Msa1380320:CDS | 55.0% | |
| AAGGCCTATGCTGAAGACGG+TGG | - | tig0020342:37809-37828 | Msa1380320:intron | 55.0% | |
| AGGCCTATGCTGAAGACGGT+GGG | - | tig0020342:37810-37829 | Msa1380320:intron | 55.0% | |
| TGATCAACGCAGTGAACGCG+CGG | - | tig0020342:38226-38245 | Msa1380320:intron | 55.0% | |
| TTGGGGGAGAGGCTTCATGA+AGG | - | tig0020342:38695-38714 | Msa1380320:intron | 55.0% | |
| GAAGAGGAGGTTGTCTGCAG+AGG | - | tig0020342:38905-38924 | Msa1380320:CDS | 55.0% | |
| TAGTGTGTCTGCTGCAGCCA+TGG | + | tig0020342:39113-39132 | None:intergenic | 55.0% | |
| GGCCTATGCTGAAGACGGTG+GGG | - | tig0020342:37811-37830 | Msa1380320:intron | 60.0% | |
| GTCCCCACCGTCTTCAGCAT+AGG | + | tig0020342:37816-37835 | None:intergenic | 60.0% | |
| CGTCCGCTCTCTGTTGTTCC+TGG | - | tig0020342:38455-38474 | Msa1380320:intron | 60.0% | |
| GGAGGTTGTCTGCAGAGGGA+AGG | - | tig0020342:38910-38929 | Msa1380320:CDS | 60.0% | |
| TCCTGCGGTGGAAGCAACCA+TGG | - | tig0020342:39093-39112 | Msa1380320:CDS | 60.0% | |
| !! | TTGGTGACGAGTGGCGGCCA+TGG | + | tig0020342:35914-35933 | None:intergenic | 65.0% |
| AAGGCGGGCCGTGGAGAAGA+AGG | - | tig0020342:37419-37438 | Msa1380320:CDS | 65.0% | |
| TCAACGCAGTGAACGCGCGG+CGG | - | tig0020342:38229-38248 | Msa1380320:intron | 65.0% | |
| GCCATGGTTGCTTCCACCGC+AGG | + | tig0020342:39097-39116 | None:intergenic | 65.0% | |
| TGCGACGGAGCCTCGTCGCA+AGG | + | tig0020342:36053-36072 | None:intergenic | 70.0% | |
| CAACGCAGTGAACGCGCGGC+GGG | - | tig0020342:38230-38249 | Msa1380320:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020342 | gene | 35884 | 39162 | 35884 | ID=Msa1380320;Name=Msa1380320 |
| tig0020342 | mRNA | 35884 | 39162 | 35884 | ID=Msa1380320-mRNA-1;Parent=Msa1380320;Name=Msa1380320-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0.66|0|1|1|1|4|0|742 |
| tig0020342 | exon | 38815 | 39162 | 38815 | ID=Msa1380320-mRNA-1:exon:7116;Parent=Msa1380320-mRNA-1 |
| tig0020342 | exon | 37933 | 38088 | 37933 | ID=Msa1380320-mRNA-1:exon:7115;Parent=Msa1380320-mRNA-1 |
| tig0020342 | exon | 37151 | 37804 | 37151 | ID=Msa1380320-mRNA-1:exon:7114;Parent=Msa1380320-mRNA-1 |
| tig0020342 | exon | 35884 | 36954 | 35884 | ID=Msa1380320-mRNA-1:exon:7113;Parent=Msa1380320-mRNA-1 |
| tig0020342 | CDS | 38815 | 39162 | 38815 | ID=Msa1380320-mRNA-1:cds;Parent=Msa1380320-mRNA-1 |
| tig0020342 | CDS | 37933 | 38088 | 37933 | ID=Msa1380320-mRNA-1:cds;Parent=Msa1380320-mRNA-1 |
| tig0020342 | CDS | 37151 | 37804 | 37151 | ID=Msa1380320-mRNA-1:cds;Parent=Msa1380320-mRNA-1 |
| tig0020342 | CDS | 35884 | 36954 | 35884 | ID=Msa1380320-mRNA-1:cds;Parent=Msa1380320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
