Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166750 | XP_013450230.1 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166750 | sp|Q9FLE8|Y5986_ARATH | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.69e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166750 | A0A072U534 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa1166750 | 0.892708 | 1.237517e-74 | -8.615850e-47 |
| Msa1080870 | Msa1166750 | 0.894100 | 3.386434e-75 | -8.615850e-47 |
| Msa1119000 | Msa1166750 | 0.897123 | 1.907225e-76 | -8.615850e-47 |
| Msa1166750 | Msa1380280 | 0.893993 | 3.744737e-75 | -8.615850e-47 |
| Msa1166750 | Msa1420500 | 0.894483 | 2.364290e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166750 | MtrunA17_Chr7g0267591 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Msa1166750 | MtrunA17_Chr1g0196971 | 50.000 | 206 | 78 | 4 | 66 | 271 | 188 | 368 | 2.18e-59 | 192 |
| Msa1166750 | MtrunA17_Chr7g0266401 | 46.341 | 164 | 78 | 3 | 110 | 272 | 251 | 405 | 9.10e-46 | 158 |
| Msa1166750 | MtrunA17_Chr1g0171871 | 45.062 | 162 | 86 | 2 | 114 | 272 | 203 | 364 | 6.44e-42 | 147 |
| Msa1166750 | MtrunA17_Chr8g0388481 | 40.816 | 196 | 95 | 4 | 84 | 271 | 185 | 367 | 1.99e-41 | 146 |
| Msa1166750 | MtrunA17_Chr8g0352771 | 46.250 | 160 | 75 | 3 | 117 | 272 | 103 | 255 | 8.86e-41 | 141 |
| Msa1166750 | MtrunA17_Chr3g0083531 | 44.872 | 156 | 78 | 3 | 118 | 272 | 113 | 261 | 1.77e-40 | 141 |
| Msa1166750 | MtrunA17_Chr7g0256501 | 45.912 | 159 | 77 | 2 | 116 | 272 | 274 | 425 | 1.23e-39 | 142 |
| Msa1166750 | MtrunA17_Chr8g0392761 | 44.242 | 165 | 85 | 3 | 110 | 271 | 113 | 273 | 7.65e-39 | 137 |
| Msa1166750 | MtrunA17_Chr3g0105871 | 42.405 | 158 | 80 | 3 | 116 | 271 | 84 | 232 | 1.94e-35 | 127 |
| Msa1166750 | MtrunA17_Chr5g0437471 | 44.304 | 158 | 78 | 3 | 115 | 271 | 90 | 238 | 5.03e-35 | 126 |
| Msa1166750 | MtrunA17_Chr7g0217121 | 41.420 | 169 | 86 | 3 | 117 | 272 | 264 | 432 | 2.22e-31 | 120 |
| Msa1166750 | MtrunA17_Chr5g0431071 | 39.490 | 157 | 85 | 3 | 116 | 271 | 106 | 253 | 6.62e-31 | 115 |
| Msa1166750 | MtrunA17_Chr6g0453031 | 41.358 | 162 | 83 | 4 | 123 | 272 | 262 | 423 | 1.55e-30 | 118 |
| Msa1166750 | MtrunA17_Chr3g0113971 | 39.474 | 152 | 80 | 4 | 122 | 271 | 93 | 234 | 7.98e-28 | 107 |
| Msa1166750 | MtrunA17_Chr3g0089011 | 36.601 | 153 | 85 | 4 | 132 | 272 | 2 | 154 | 7.55e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1166750 | AT5G06470.1 | 42.435 | 271 | 123 | 5 | 1 | 271 | 1 | 238 | 1.55e-65 | 204 |
| Msa1166750 | AT5G01420.1 | 49.701 | 167 | 73 | 3 | 107 | 271 | 243 | 400 | 1.75e-46 | 160 |
| Msa1166750 | AT4G10630.1 | 43.931 | 173 | 81 | 3 | 110 | 271 | 166 | 333 | 4.71e-44 | 152 |
| Msa1166750 | AT3G11773.1 | 50.000 | 148 | 65 | 2 | 124 | 271 | 11 | 149 | 3.96e-43 | 144 |
| Msa1166750 | AT1G64500.1 | 42.690 | 171 | 88 | 3 | 107 | 271 | 199 | 365 | 8.13e-41 | 145 |
| Msa1166750 | AT5G13810.1 | 46.497 | 157 | 76 | 3 | 116 | 271 | 123 | 272 | 8.48e-41 | 142 |
| Msa1166750 | AT5G03870.1 | 46.707 | 167 | 80 | 3 | 107 | 271 | 224 | 383 | 3.75e-40 | 143 |
| Msa1166750 | AT1G32760.1 | 45.087 | 173 | 84 | 3 | 105 | 271 | 146 | 313 | 1.30e-39 | 140 |
| Msa1166750 | AT3G57070.1 | 42.500 | 160 | 82 | 2 | 116 | 272 | 264 | 416 | 9.16e-39 | 140 |
| Msa1166750 | AT2G41330.1 | 45.161 | 155 | 76 | 2 | 120 | 272 | 254 | 401 | 1.22e-36 | 134 |
| Msa1166750 | AT5G39865.1 | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.72e-32 | 123 |
| Msa1166750 | AT3G11773.2 | 41.358 | 162 | 63 | 3 | 110 | 271 | 70 | 199 | 3.52e-32 | 117 |
| Msa1166750 | AT5G58530.1 | 39.759 | 166 | 81 | 4 | 116 | 271 | 109 | 265 | 2.78e-30 | 114 |
| Msa1166750 | AT3G28850.1 | 37.989 | 179 | 87 | 3 | 118 | 272 | 249 | 427 | 1.48e-29 | 115 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGCTGATGAAGTATT+TGG | 0.240252 | 7_4:-58863915 | Msa1166750:CDS |
| GGGTTGGCTTGGAAAGATTT+TGG | 0.278994 | 7_4:-58863880 | Msa1166750:CDS |
| ACAAGAATTGTGGAATATAT+TGG | 0.291600 | 7_4:-58863985 | Msa1166750:CDS |
| TGTCATGAGTGCAATGAAAA+TGG | 0.303375 | 7_4:-58863711 | Msa1166750:CDS |
| GCTTTGTTTGGAATTGGTTT+TGG | 0.312675 | 7_4:+58864430 | None:intergenic |
| TTGAAGAATAAGGCTTTGTT+TGG | 0.313115 | 7_4:+58864418 | None:intergenic |
| AATAAGGCTTTGTTTGGAAT+TGG | 0.315616 | 7_4:+58864424 | None:intergenic |
| AGCTCAGTAAGGTTATTTAC+TGG | 0.340246 | 7_4:+58864293 | None:intergenic |
| ACCTCGAATCATTTACTTTG+TGG | 0.349053 | 7_4:+58864336 | None:intergenic |
| GAGTGTTGAGTTGAAGAATA+AGG | 0.358573 | 7_4:+58864408 | None:intergenic |
| TCTAGTGATTGTCTTTGTAT+TGG | 0.359751 | 7_4:-58863840 | Msa1166750:CDS |
| GTTATTTACTGGTCCGGATT+GGG | 0.362324 | 7_4:+58864304 | None:intergenic |
| CAACAAGTTTGAGAGGAATA+AGG | 0.368582 | 7_4:-58864103 | Msa1166750:CDS |
| AGTATTTGGTTTGCATGAAA+TGG | 0.370856 | 7_4:-58863901 | Msa1166750:CDS |
| CAAGAATTGTGGAATATATT+GGG | 0.395179 | 7_4:-58863984 | Msa1166750:CDS |
| GGTTATTTACTGGTCCGGAT+TGG | 0.410432 | 7_4:+58864303 | None:intergenic |
| AGTAAGGTTATTTACTGGTC+CGG | 0.418085 | 7_4:+58864298 | None:intergenic |
| TCTTACGAAACATTCATTGT+TGG | 0.427596 | 7_4:+58863734 | None:intergenic |
| AAGAGACGTGTCTCTGGACT+TGG | 0.430407 | 7_4:-58864015 | Msa1166750:CDS |
| GTATTTGGTTTGCATGAAAT+GGG | 0.439941 | 7_4:-58863900 | Msa1166750:CDS |
| TTAAACTTCTCAACAAGAAA+CGG | 0.443285 | 7_4:+58864054 | None:intergenic |
| TCATGAAAGAGACGTGTCTC+TGG | 0.446751 | 7_4:-58864021 | Msa1166750:CDS |
| TACTGGTCCGGATTGGGCCG+AGG | 0.460161 | 7_4:+58864310 | None:intergenic |
| GATTGTCTTTGTATTGGTTG+TGG | 0.460271 | 7_4:-58863834 | Msa1166750:CDS |
| AGGTGGACCTCGGCCCAATC+CGG | 0.462919 | 7_4:-58864317 | Msa1166750:CDS |
| TTGCATGAAATGGGTTGGCT+TGG | 0.477233 | 7_4:-58863891 | Msa1166750:CDS |
| TTGTATTGGTTGTGGCAACA+TGG | 0.495778 | 7_4:-58863826 | Msa1166750:CDS |
| AATCAATTTCTAGCAGCAAA+TGG | 0.503558 | 7_4:+58863674 | None:intergenic |
| TCTTCAAAATCTTTAAGAGA+TGG | 0.511251 | 7_4:+58864167 | None:intergenic |
| TCGTCGAAGAACGGTGAAGT+AGG | 0.513102 | 7_4:+58864359 | None:intergenic |
| TTGGTTTGCATGAAATGGGT+TGG | 0.514916 | 7_4:-58863896 | Msa1166750:CDS |
| TTTATCAAAGGAAGGTACAT+TGG | 0.518107 | 7_4:-58863936 | Msa1166750:CDS |
| GGCTAAACTCTAGCTCAGTA+AGG | 0.526434 | 7_4:+58864282 | None:intergenic |
| ACTATTTGTTCAACTTGTTG+TGG | 0.529923 | 7_4:-58863798 | Msa1166750:CDS |
| ATCAAAGGAAGGTACATTGG+AGG | 0.532217 | 7_4:-58863933 | Msa1166750:CDS |
| ACTTTGTGGTCGTCGAAGAA+CGG | 0.536006 | 7_4:+58864350 | None:intergenic |
| GTCATGAGTGCAATGAAAAT+GGG | 0.536463 | 7_4:-58863710 | Msa1166750:CDS |
| AATGATGTATCTTATCATCA+TGG | 0.540809 | 7_4:+58864255 | None:intergenic |
| TGTATTGGTTGTGGCAACAT+GGG | 0.561860 | 7_4:-58863825 | Msa1166750:CDS |
| GTATCTTATCATCATGGTCA+AGG | 0.566577 | 7_4:+58864261 | None:intergenic |
| CTTTACACAACAAGTTTGAG+AGG | 0.567777 | 7_4:-58864110 | Msa1166750:CDS |
| CGTCGAAGAACGGTGAAGTA+GGG | 0.568611 | 7_4:+58864360 | None:intergenic |
| TGGAATACAGACAAGAATTG+TGG | 0.592485 | 7_4:-58863995 | Msa1166750:CDS |
| TGCAAAGTCTTCATCAACAA+TGG | 0.594691 | 7_4:-58863771 | Msa1166750:CDS |
| ATCGAATTGCTTCCACCTGG+TGG | 0.594982 | 7_4:+58864137 | None:intergenic |
| ACCACAAAGTAAATGATTCG+AGG | 0.595693 | 7_4:-58864337 | Msa1166750:CDS |
| AAATGATTCGAGGTGGACCT+CGG | 0.604520 | 7_4:-58864327 | Msa1166750:CDS |
| TTTGAAGAAAAGTGTCCACC+AGG | 0.627686 | 7_4:-58864152 | Msa1166750:CDS |
| AGACAATCACTAGAAACAGT+TGG | 0.630148 | 7_4:+58863849 | None:intergenic |
| ATGATCGAATTGCTTCCACC+TGG | 0.638579 | 7_4:+58864134 | None:intergenic |
| GAAGAAAAGTGTCCACCAGG+TGG | 0.664756 | 7_4:-58864149 | Msa1166750:CDS |
| ACAAAGTAAATGATTCGAGG+TGG | 0.686682 | 7_4:-58864334 | Msa1166750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATGTATCTTATCATCA+TGG | + | chr7_4:58863910-58863929 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | chr7_4:58863913-58863932 | Msa1166750:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | chr7_4:58863998-58864017 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | chr7_4:58864111-58864130 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | chr7_4:58864177-58864196 | Msa1166750:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | chr7_4:58864178-58864197 | Msa1166750:CDS | 25.0% |
| ! | AATGATGTATCTTATCATCA+TGG | + | chr7_4:58863910-58863929 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | chr7_4:58863913-58863932 | Msa1166750:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | chr7_4:58863998-58864017 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | chr7_4:58864111-58864130 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | chr7_4:58864177-58864196 | Msa1166750:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | chr7_4:58864178-58864197 | Msa1166750:CDS | 25.0% |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | chr7_4:58863741-58863760 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | chr7_4:58863747-58863766 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | chr7_4:58863779-58863798 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | chr7_4:58864220-58864239 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | chr7_4:58864218-58864237 | Msa1166750:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | chr7_4:58864226-58864245 | Msa1166750:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | chr7_4:58864261-58864280 | Msa1166750:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | chr7_4:58864262-58864281 | Msa1166750:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | chr7_4:58864322-58864341 | Msa1166750:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | chr7_4:58864364-58864383 | Msa1166750:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | chr7_4:58864431-58864450 | None:intergenic | 30.0% | |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | chr7_4:58863741-58863760 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | chr7_4:58863747-58863766 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | chr7_4:58863779-58863798 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | chr7_4:58864220-58864239 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | chr7_4:58864218-58864237 | Msa1166750:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | chr7_4:58864226-58864245 | Msa1166750:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | chr7_4:58864261-58864280 | Msa1166750:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | chr7_4:58864262-58864281 | Msa1166750:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | chr7_4:58864322-58864341 | Msa1166750:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | chr7_4:58864364-58864383 | Msa1166750:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | chr7_4:58864431-58864450 | None:intergenic | 30.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | chr7_4:58863730-58863749 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | chr7_4:58863731-58863750 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | chr7_4:58863735-58863754 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | chr7_4:58863757-58863776 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | chr7_4:58863825-58863844 | Msa1166750:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | chr7_4:58863829-58863848 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | chr7_4:58863828-58863847 | Msa1166750:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | chr7_4:58863867-58863886 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | chr7_4:58863872-58863891 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | chr7_4:58863904-58863923 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | chr7_4:58864052-58864071 | Msa1166750:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | chr7_4:58864059-58864078 | Msa1166750:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | chr7_4:58864167-58864186 | Msa1166750:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | chr7_4:58864217-58864236 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | chr7_4:58864214-58864233 | Msa1166750:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | chr7_4:58864316-58864335 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | chr7_4:58864328-58864347 | Msa1166750:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | chr7_4:58864391-58864410 | Msa1166750:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | chr7_4:58864451-58864470 | Msa1166750:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | chr7_4:58864452-58864471 | Msa1166750:CDS | 35.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | chr7_4:58863730-58863749 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | chr7_4:58863731-58863750 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | chr7_4:58863735-58863754 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | chr7_4:58863757-58863776 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | chr7_4:58863825-58863844 | Msa1166750:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | chr7_4:58863829-58863848 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | chr7_4:58863828-58863847 | Msa1166750:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | chr7_4:58863867-58863886 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | chr7_4:58863872-58863891 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | chr7_4:58863904-58863923 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | chr7_4:58864052-58864071 | Msa1166750:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | chr7_4:58864059-58864078 | Msa1166750:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | chr7_4:58864167-58864186 | Msa1166750:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | chr7_4:58864217-58864236 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | chr7_4:58864214-58864233 | Msa1166750:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | chr7_4:58864316-58864335 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | chr7_4:58864328-58864347 | Msa1166750:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | chr7_4:58864391-58864410 | Msa1166750:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | chr7_4:58864451-58864470 | Msa1166750:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | chr7_4:58864452-58864471 | Msa1166750:CDS | 35.0% | |
| GTTATTTACTGGTCCGGATT+GGG | + | chr7_4:58863861-58863880 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | chr7_4:58864010-58864029 | Msa1166750:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | chr7_4:58864229-58864248 | Msa1166750:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | chr7_4:58864266-58864285 | Msa1166750:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | chr7_4:58864286-58864305 | Msa1166750:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | chr7_4:58864336-58864355 | Msa1166750:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | chr7_4:58864337-58864356 | Msa1166750:CDS | 40.0% |
| GTTATTTACTGGTCCGGATT+GGG | + | chr7_4:58863861-58863880 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | chr7_4:58864010-58864029 | Msa1166750:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | chr7_4:58864229-58864248 | Msa1166750:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | chr7_4:58864266-58864285 | Msa1166750:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | chr7_4:58864286-58864305 | Msa1166750:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | chr7_4:58864336-58864355 | Msa1166750:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | chr7_4:58864337-58864356 | Msa1166750:CDS | 40.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | chr7_4:58863815-58863834 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | chr7_4:58863835-58863854 | Msa1166750:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | chr7_4:58863862-58863881 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | chr7_4:58863883-58863902 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | chr7_4:58864031-58864050 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | chr7_4:58864141-58864160 | Msa1166750:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | chr7_4:58864247-58864266 | Msa1166750:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | chr7_4:58864271-58864290 | Msa1166750:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | chr7_4:58864282-58864301 | Msa1166750:CDS | 45.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | chr7_4:58863815-58863834 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | chr7_4:58863835-58863854 | Msa1166750:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | chr7_4:58863862-58863881 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | chr7_4:58863883-58863902 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | chr7_4:58864031-58864050 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | chr7_4:58864141-58864160 | Msa1166750:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | chr7_4:58864247-58864266 | Msa1166750:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | chr7_4:58864271-58864290 | Msa1166750:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | chr7_4:58864282-58864301 | Msa1166750:CDS | 45.0% |
| CGTCGAAGAACGGTGAAGTA+GGG | + | chr7_4:58863805-58863824 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | chr7_4:58863806-58863825 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | chr7_4:58864013-58864032 | Msa1166750:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | chr7_4:58864028-58864047 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | chr7_4:58864147-58864166 | Msa1166750:CDS | 50.0% | |
| CGTCGAAGAACGGTGAAGTA+GGG | + | chr7_4:58863805-58863824 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | chr7_4:58863806-58863825 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | chr7_4:58864013-58864032 | Msa1166750:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | chr7_4:58864028-58864047 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | chr7_4:58864147-58864166 | Msa1166750:CDS | 50.0% | |
| AGGTGGACCTCGGCCCAATC+CGG | - | chr7_4:58863845-58863864 | Msa1166750:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | chr7_4:58863855-58863874 | None:intergenic | 65.0% |
| AGGTGGACCTCGGCCCAATC+CGG | - | chr7_4:58863845-58863864 | Msa1166750:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | chr7_4:58863855-58863874 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 58863683 | 58864501 | 58863683 | ID=Msa1166750;Name=Msa1166750 |
| chr7_4 | mRNA | 58863683 | 58864501 | 58863683 | ID=Msa1166750-mRNA-1;Parent=Msa1166750;Name=Msa1166750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr7_4 | exon | 58863683 | 58864501 | 58863683 | ID=Msa1166750-mRNA-1:exon:18138;Parent=Msa1166750-mRNA-1 |
| chr7_4 | CDS | 58863683 | 58864501 | 58863683 | ID=Msa1166750-mRNA-1:cds;Parent=Msa1166750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
