Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420500 | sp|Q9FLE8|Y5986_ARATH | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.69e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420500 | A0A072U534 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa1420500 | 0.996635 | 4.014112e-230 | -8.615850e-47 |
| Msa0052460 | Msa1420500 | 0.803086 | 4.122479e-49 | -8.615850e-47 |
| Msa0110970 | Msa1420500 | 0.800008 | 1.762549e-48 | -8.615850e-47 |
| Msa1351760 | Msa1420500 | 0.823045 | 1.710733e-53 | -8.615850e-47 |
| Msa1380280 | Msa1420500 | 0.976560 | 4.640036e-142 | -8.615850e-47 |
| Msa0197230 | Msa1420500 | 0.817070 | 3.991050e-52 | -8.615850e-47 |
| Msa0387510 | Msa1420500 | 0.806813 | 6.856484e-50 | -8.615850e-47 |
| Msa0450440 | Msa1420500 | 0.803953 | 2.725221e-49 | -8.615850e-47 |
| Msa1014270 | Msa1420500 | 0.801431 | 9.034864e-49 | -8.615850e-47 |
| Msa1040320 | Msa1420500 | 0.804189 | 2.434493e-49 | -8.615850e-47 |
| Msa1055260 | Msa1420500 | 0.808521 | 2.972860e-50 | -8.615850e-47 |
| Msa1055280 | Msa1420500 | 0.813684 | 2.259402e-51 | -8.615850e-47 |
| Msa1055300 | Msa1420500 | 0.810035 | 1.407964e-50 | -8.615850e-47 |
| Msa1080870 | Msa1420500 | 0.977685 | 2.807850e-144 | -8.615850e-47 |
| Msa0238890 | Msa1420500 | 0.820014 | 8.580076e-53 | -8.615850e-47 |
| Msa0239130 | Msa1420500 | 0.800663 | 1.296879e-48 | -8.615850e-47 |
| Msa0289890 | Msa1420500 | 0.824022 | 1.010740e-53 | -8.615850e-47 |
| Msa0306300 | Msa1420500 | 0.810074 | 1.381342e-50 | -8.615850e-47 |
| Msa1119000 | Msa1420500 | 0.979222 | 1.699422e-147 | -8.615850e-47 |
| Msa1127950 | Msa1420500 | 0.817828 | 2.693518e-52 | -8.615850e-47 |
| Msa1166750 | Msa1420500 | 0.894483 | 2.364290e-75 | -8.615850e-47 |
| Msa0510980 | Msa1420500 | 0.809232 | 2.095054e-50 | -8.615850e-47 |
| Msa0977320 | Msa1420500 | 0.806065 | 9.859006e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420500 | MtrunA17_Chr7g0267591 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Msa1420500 | MtrunA17_Chr1g0196971 | 50.000 | 206 | 78 | 4 | 66 | 271 | 188 | 368 | 2.18e-59 | 192 |
| Msa1420500 | MtrunA17_Chr7g0266401 | 46.341 | 164 | 78 | 3 | 110 | 272 | 251 | 405 | 9.10e-46 | 158 |
| Msa1420500 | MtrunA17_Chr1g0171871 | 45.062 | 162 | 86 | 2 | 114 | 272 | 203 | 364 | 6.44e-42 | 147 |
| Msa1420500 | MtrunA17_Chr8g0388481 | 40.816 | 196 | 95 | 4 | 84 | 271 | 185 | 367 | 1.99e-41 | 146 |
| Msa1420500 | MtrunA17_Chr8g0352771 | 46.250 | 160 | 75 | 3 | 117 | 272 | 103 | 255 | 8.86e-41 | 141 |
| Msa1420500 | MtrunA17_Chr3g0083531 | 44.872 | 156 | 78 | 3 | 118 | 272 | 113 | 261 | 1.77e-40 | 141 |
| Msa1420500 | MtrunA17_Chr7g0256501 | 45.912 | 159 | 77 | 2 | 116 | 272 | 274 | 425 | 1.23e-39 | 142 |
| Msa1420500 | MtrunA17_Chr8g0392761 | 44.242 | 165 | 85 | 3 | 110 | 271 | 113 | 273 | 7.65e-39 | 137 |
| Msa1420500 | MtrunA17_Chr3g0105871 | 42.405 | 158 | 80 | 3 | 116 | 271 | 84 | 232 | 1.94e-35 | 127 |
| Msa1420500 | MtrunA17_Chr5g0437471 | 44.304 | 158 | 78 | 3 | 115 | 271 | 90 | 238 | 5.03e-35 | 126 |
| Msa1420500 | MtrunA17_Chr7g0217121 | 41.420 | 169 | 86 | 3 | 117 | 272 | 264 | 432 | 2.22e-31 | 120 |
| Msa1420500 | MtrunA17_Chr5g0431071 | 39.490 | 157 | 85 | 3 | 116 | 271 | 106 | 253 | 6.62e-31 | 115 |
| Msa1420500 | MtrunA17_Chr6g0453031 | 41.358 | 162 | 83 | 4 | 123 | 272 | 262 | 423 | 1.55e-30 | 118 |
| Msa1420500 | MtrunA17_Chr3g0113971 | 39.474 | 152 | 80 | 4 | 122 | 271 | 93 | 234 | 7.98e-28 | 107 |
| Msa1420500 | MtrunA17_Chr3g0089011 | 36.601 | 153 | 85 | 4 | 132 | 272 | 2 | 154 | 7.55e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1420500 | AT5G06470.1 | 42.435 | 271 | 123 | 5 | 1 | 271 | 1 | 238 | 1.55e-65 | 204 |
| Msa1420500 | AT5G01420.1 | 49.701 | 167 | 73 | 3 | 107 | 271 | 243 | 400 | 1.75e-46 | 160 |
| Msa1420500 | AT4G10630.1 | 43.931 | 173 | 81 | 3 | 110 | 271 | 166 | 333 | 4.71e-44 | 152 |
| Msa1420500 | AT3G11773.1 | 50.000 | 148 | 65 | 2 | 124 | 271 | 11 | 149 | 3.96e-43 | 144 |
| Msa1420500 | AT1G64500.1 | 42.690 | 171 | 88 | 3 | 107 | 271 | 199 | 365 | 8.13e-41 | 145 |
| Msa1420500 | AT5G13810.1 | 46.497 | 157 | 76 | 3 | 116 | 271 | 123 | 272 | 8.48e-41 | 142 |
| Msa1420500 | AT5G03870.1 | 46.707 | 167 | 80 | 3 | 107 | 271 | 224 | 383 | 3.75e-40 | 143 |
| Msa1420500 | AT1G32760.1 | 45.087 | 173 | 84 | 3 | 105 | 271 | 146 | 313 | 1.30e-39 | 140 |
| Msa1420500 | AT3G57070.1 | 42.500 | 160 | 82 | 2 | 116 | 272 | 264 | 416 | 9.16e-39 | 140 |
| Msa1420500 | AT2G41330.1 | 45.161 | 155 | 76 | 2 | 120 | 272 | 254 | 401 | 1.22e-36 | 134 |
| Msa1420500 | AT5G39865.1 | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.72e-32 | 123 |
| Msa1420500 | AT3G11773.2 | 41.358 | 162 | 63 | 3 | 110 | 271 | 70 | 199 | 3.52e-32 | 117 |
| Msa1420500 | AT5G58530.1 | 39.759 | 166 | 81 | 4 | 116 | 271 | 109 | 265 | 2.78e-30 | 114 |
| Msa1420500 | AT3G28850.1 | 37.989 | 179 | 87 | 3 | 118 | 272 | 249 | 427 | 1.48e-29 | 115 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGCTGATGAAGTATT+TGG | 0.240252 | tig0024822:-7784 | Msa1420500:CDS |
| GGGTTGGCTTGGAAAGATTT+TGG | 0.278994 | tig0024822:-7749 | Msa1420500:CDS |
| ACAAGAATTGTGGAATATAT+TGG | 0.291600 | tig0024822:-7854 | Msa1420500:CDS |
| TGTCATGAGTGCAATGAAAA+TGG | 0.303375 | tig0024822:-7580 | Msa1420500:CDS |
| GCTTTGTTTGGAATTGGTTT+TGG | 0.312675 | tig0024822:+8299 | None:intergenic |
| TTGAAGAATAAGGCTTTGTT+TGG | 0.313115 | tig0024822:+8287 | None:intergenic |
| AATAAGGCTTTGTTTGGAAT+TGG | 0.315616 | tig0024822:+8293 | None:intergenic |
| AGCTCAGTAAGGTTATTTAC+TGG | 0.340246 | tig0024822:+8162 | None:intergenic |
| ACCTCGAATCATTTACTTTG+TGG | 0.349053 | tig0024822:+8205 | None:intergenic |
| GAGTGTTGAGTTGAAGAATA+AGG | 0.358573 | tig0024822:+8277 | None:intergenic |
| TCTAGTGATTGTCTTTGTAT+TGG | 0.359751 | tig0024822:-7709 | Msa1420500:CDS |
| GTTATTTACTGGTCCGGATT+GGG | 0.362324 | tig0024822:+8173 | None:intergenic |
| CAACAAGTTTGAGAGGAATA+AGG | 0.368582 | tig0024822:-7972 | Msa1420500:CDS |
| AGTATTTGGTTTGCATGAAA+TGG | 0.370856 | tig0024822:-7770 | Msa1420500:CDS |
| CAAGAATTGTGGAATATATT+GGG | 0.395179 | tig0024822:-7853 | Msa1420500:CDS |
| GGTTATTTACTGGTCCGGAT+TGG | 0.410432 | tig0024822:+8172 | None:intergenic |
| AGTAAGGTTATTTACTGGTC+CGG | 0.418085 | tig0024822:+8167 | None:intergenic |
| TCTTACGAAACATTCATTGT+TGG | 0.427596 | tig0024822:+7603 | None:intergenic |
| AAGAGACGTGTCTCTGGACT+TGG | 0.430407 | tig0024822:-7884 | Msa1420500:CDS |
| GTATTTGGTTTGCATGAAAT+GGG | 0.439941 | tig0024822:-7769 | Msa1420500:CDS |
| TTAAACTTCTCAACAAGAAA+CGG | 0.443285 | tig0024822:+7923 | None:intergenic |
| TCATGAAAGAGACGTGTCTC+TGG | 0.446751 | tig0024822:-7890 | Msa1420500:CDS |
| TACTGGTCCGGATTGGGCCG+AGG | 0.460161 | tig0024822:+8179 | None:intergenic |
| GATTGTCTTTGTATTGGTTG+TGG | 0.460271 | tig0024822:-7703 | Msa1420500:CDS |
| AGGTGGACCTCGGCCCAATC+CGG | 0.462919 | tig0024822:-8186 | Msa1420500:CDS |
| TTGCATGAAATGGGTTGGCT+TGG | 0.477233 | tig0024822:-7760 | Msa1420500:CDS |
| TTGTATTGGTTGTGGCAACA+TGG | 0.495778 | tig0024822:-7695 | Msa1420500:CDS |
| AATCAATTTCTAGCAGCAAA+TGG | 0.503558 | tig0024822:+7543 | None:intergenic |
| TCTTCAAAATCTTTAAGAGA+TGG | 0.511251 | tig0024822:+8036 | None:intergenic |
| TCGTCGAAGAACGGTGAAGT+AGG | 0.513102 | tig0024822:+8228 | None:intergenic |
| TTGGTTTGCATGAAATGGGT+TGG | 0.514916 | tig0024822:-7765 | Msa1420500:CDS |
| TTTATCAAAGGAAGGTACAT+TGG | 0.518107 | tig0024822:-7805 | Msa1420500:CDS |
| GGCTAAACTCTAGCTCAGTA+AGG | 0.526434 | tig0024822:+8151 | None:intergenic |
| ACTATTTGTTCAACTTGTTG+TGG | 0.529923 | tig0024822:-7667 | Msa1420500:CDS |
| ATCAAAGGAAGGTACATTGG+AGG | 0.532217 | tig0024822:-7802 | Msa1420500:CDS |
| ACTTTGTGGTCGTCGAAGAA+CGG | 0.536006 | tig0024822:+8219 | None:intergenic |
| GTCATGAGTGCAATGAAAAT+GGG | 0.536463 | tig0024822:-7579 | Msa1420500:CDS |
| AATGATGTATCTTATCATCA+TGG | 0.540809 | tig0024822:+8124 | None:intergenic |
| TGTATTGGTTGTGGCAACAT+GGG | 0.561860 | tig0024822:-7694 | Msa1420500:CDS |
| GTATCTTATCATCATGGTCA+AGG | 0.566577 | tig0024822:+8130 | None:intergenic |
| CTTTACACAACAAGTTTGAG+AGG | 0.567777 | tig0024822:-7979 | Msa1420500:CDS |
| CGTCGAAGAACGGTGAAGTA+GGG | 0.568611 | tig0024822:+8229 | None:intergenic |
| TGGAATACAGACAAGAATTG+TGG | 0.592485 | tig0024822:-7864 | Msa1420500:CDS |
| TGCAAAGTCTTCATCAACAA+TGG | 0.594691 | tig0024822:-7640 | Msa1420500:CDS |
| ATCGAATTGCTTCCACCTGG+TGG | 0.594982 | tig0024822:+8006 | None:intergenic |
| ACCACAAAGTAAATGATTCG+AGG | 0.595693 | tig0024822:-8206 | Msa1420500:CDS |
| AAATGATTCGAGGTGGACCT+CGG | 0.604520 | tig0024822:-8196 | Msa1420500:CDS |
| TTTGAAGAAAAGTGTCCACC+AGG | 0.627686 | tig0024822:-8021 | Msa1420500:CDS |
| AGACAATCACTAGAAACAGT+TGG | 0.630148 | tig0024822:+7718 | None:intergenic |
| ATGATCGAATTGCTTCCACC+TGG | 0.638579 | tig0024822:+8003 | None:intergenic |
| GAAGAAAAGTGTCCACCAGG+TGG | 0.664756 | tig0024822:-8018 | Msa1420500:CDS |
| ACAAAGTAAATGATTCGAGG+TGG | 0.686682 | tig0024822:-8203 | Msa1420500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATGTATCTTATCATCA+TGG | + | tig0024822:7779-7798 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | tig0024822:7782-7801 | Msa1420500:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | tig0024822:7867-7886 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | tig0024822:7980-7999 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | tig0024822:8046-8065 | Msa1420500:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | tig0024822:8047-8066 | Msa1420500:CDS | 25.0% |
| ! | AATGATGTATCTTATCATCA+TGG | + | tig0024822:7779-7798 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | tig0024822:7782-7801 | Msa1420500:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | tig0024822:7867-7886 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | tig0024822:7980-7999 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | tig0024822:8046-8065 | Msa1420500:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | tig0024822:8047-8066 | Msa1420500:CDS | 25.0% |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | tig0024822:7610-7629 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | tig0024822:7616-7635 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | tig0024822:7648-7667 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | tig0024822:8089-8108 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | tig0024822:8087-8106 | Msa1420500:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | tig0024822:8095-8114 | Msa1420500:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | tig0024822:8130-8149 | Msa1420500:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | tig0024822:8131-8150 | Msa1420500:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | tig0024822:8191-8210 | Msa1420500:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | tig0024822:8233-8252 | Msa1420500:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | tig0024822:8300-8319 | None:intergenic | 30.0% | |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | tig0024822:7610-7629 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | tig0024822:7616-7635 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | tig0024822:7648-7667 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | tig0024822:8089-8108 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | tig0024822:8087-8106 | Msa1420500:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | tig0024822:8095-8114 | Msa1420500:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | tig0024822:8130-8149 | Msa1420500:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | tig0024822:8131-8150 | Msa1420500:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | tig0024822:8191-8210 | Msa1420500:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | tig0024822:8233-8252 | Msa1420500:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | tig0024822:8300-8319 | None:intergenic | 30.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | tig0024822:7599-7618 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | tig0024822:7600-7619 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | tig0024822:7604-7623 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | tig0024822:7626-7645 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | tig0024822:7694-7713 | Msa1420500:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | tig0024822:7698-7717 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | tig0024822:7697-7716 | Msa1420500:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | tig0024822:7736-7755 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | tig0024822:7741-7760 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | tig0024822:7773-7792 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | tig0024822:7921-7940 | Msa1420500:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | tig0024822:7928-7947 | Msa1420500:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | tig0024822:8036-8055 | Msa1420500:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | tig0024822:8086-8105 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | tig0024822:8083-8102 | Msa1420500:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | tig0024822:8185-8204 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | tig0024822:8197-8216 | Msa1420500:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | tig0024822:8260-8279 | Msa1420500:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | tig0024822:8320-8339 | Msa1420500:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | tig0024822:8321-8340 | Msa1420500:CDS | 35.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | tig0024822:7599-7618 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | tig0024822:7600-7619 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | tig0024822:7604-7623 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | tig0024822:7626-7645 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | tig0024822:7694-7713 | Msa1420500:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | tig0024822:7698-7717 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | tig0024822:7697-7716 | Msa1420500:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | tig0024822:7736-7755 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | tig0024822:7741-7760 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | tig0024822:7773-7792 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | tig0024822:7921-7940 | Msa1420500:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | tig0024822:7928-7947 | Msa1420500:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | tig0024822:8036-8055 | Msa1420500:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | tig0024822:8086-8105 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | tig0024822:8083-8102 | Msa1420500:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | tig0024822:8185-8204 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | tig0024822:8197-8216 | Msa1420500:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | tig0024822:8260-8279 | Msa1420500:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | tig0024822:8320-8339 | Msa1420500:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | tig0024822:8321-8340 | Msa1420500:CDS | 35.0% | |
| GTTATTTACTGGTCCGGATT+GGG | + | tig0024822:7730-7749 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | tig0024822:7879-7898 | Msa1420500:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | tig0024822:8098-8117 | Msa1420500:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | tig0024822:8135-8154 | Msa1420500:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | tig0024822:8155-8174 | Msa1420500:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | tig0024822:8205-8224 | Msa1420500:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | tig0024822:8206-8225 | Msa1420500:CDS | 40.0% |
| GTTATTTACTGGTCCGGATT+GGG | + | tig0024822:7730-7749 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | tig0024822:7879-7898 | Msa1420500:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | tig0024822:8098-8117 | Msa1420500:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | tig0024822:8135-8154 | Msa1420500:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | tig0024822:8155-8174 | Msa1420500:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | tig0024822:8205-8224 | Msa1420500:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | tig0024822:8206-8225 | Msa1420500:CDS | 40.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | tig0024822:7684-7703 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | tig0024822:7704-7723 | Msa1420500:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | tig0024822:7731-7750 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | tig0024822:7752-7771 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | tig0024822:7900-7919 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | tig0024822:8010-8029 | Msa1420500:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | tig0024822:8116-8135 | Msa1420500:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | tig0024822:8140-8159 | Msa1420500:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | tig0024822:8151-8170 | Msa1420500:CDS | 45.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | tig0024822:7684-7703 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | tig0024822:7704-7723 | Msa1420500:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | tig0024822:7731-7750 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | tig0024822:7752-7771 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | tig0024822:7900-7919 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | tig0024822:8010-8029 | Msa1420500:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | tig0024822:8116-8135 | Msa1420500:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | tig0024822:8140-8159 | Msa1420500:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | tig0024822:8151-8170 | Msa1420500:CDS | 45.0% |
| CGTCGAAGAACGGTGAAGTA+GGG | + | tig0024822:7674-7693 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | tig0024822:7675-7694 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | tig0024822:7882-7901 | Msa1420500:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | tig0024822:7897-7916 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | tig0024822:8016-8035 | Msa1420500:CDS | 50.0% | |
| CGTCGAAGAACGGTGAAGTA+GGG | + | tig0024822:7674-7693 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | tig0024822:7675-7694 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | tig0024822:7882-7901 | Msa1420500:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | tig0024822:7897-7916 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | tig0024822:8016-8035 | Msa1420500:CDS | 50.0% | |
| AGGTGGACCTCGGCCCAATC+CGG | - | tig0024822:7714-7733 | Msa1420500:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | tig0024822:7724-7743 | None:intergenic | 65.0% |
| AGGTGGACCTCGGCCCAATC+CGG | - | tig0024822:7714-7733 | Msa1420500:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | tig0024822:7724-7743 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024822 | gene | 7552 | 8370 | 7552 | ID=Msa1420500;Name=Msa1420500 |
| tig0024822 | mRNA | 7552 | 8370 | 7552 | ID=Msa1420500-mRNA-1;Parent=Msa1420500;Name=Msa1420500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|272 |
| tig0024822 | exon | 7552 | 8370 | 7552 | ID=Msa1420500-mRNA-1:exon:1547;Parent=Msa1420500-mRNA-1 |
| tig0024822 | CDS | 7552 | 8370 | 7552 | ID=Msa1420500-mRNA-1:cds;Parent=Msa1420500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
