Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000760 | sp|Q9FLE8|Y5986_ARATH | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.69e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa0052460 | 0.804005 | 2.658395e-49 | -8.615850e-47 |
| Msa0000760 | Msa0072810 | 0.803084 | 4.126781e-49 | -8.615850e-47 |
| Msa0000760 | Msa0103000 | 0.809126 | 2.206851e-50 | -8.615850e-47 |
| Msa0000760 | Msa0110970 | 0.814451 | 1.530255e-51 | -8.615850e-47 |
| Msa0000760 | Msa0147560 | 0.807254 | 5.528965e-50 | -8.615850e-47 |
| Msa0000760 | Msa0197230 | 0.826777 | 2.251817e-54 | -8.615850e-47 |
| Msa0000760 | Msa0238890 | 0.827481 | 1.528006e-54 | -8.615850e-47 |
| Msa0000760 | Msa0239130 | 0.802114 | 6.541444e-49 | -8.615850e-47 |
| Msa0000760 | Msa0289890 | 0.832691 | 8.181709e-56 | -8.615850e-47 |
| Msa0000760 | Msa0306300 | 0.818956 | 1.495617e-52 | -8.615850e-47 |
| Msa0000760 | Msa0387510 | 0.813449 | 2.544840e-51 | -8.615850e-47 |
| Msa0000760 | Msa0450440 | 0.812291 | 4.564067e-51 | -8.615850e-47 |
| Msa0000760 | Msa0510980 | 0.816200 | 6.250145e-52 | -8.615850e-47 |
| Msa0000760 | Msa0872310 | 0.806272 | 8.918031e-50 | -8.615850e-47 |
| Msa0000760 | Msa0977320 | 0.812341 | 4.451579e-51 | -8.615850e-47 |
| Msa0000760 | Msa1014270 | 0.805991 | 1.021535e-49 | -8.615850e-47 |
| Msa0000760 | Msa1040320 | 0.812087 | 5.056422e-51 | -8.615850e-47 |
| Msa0000760 | Msa1055260 | 0.812241 | 4.680478e-51 | -8.615850e-47 |
| Msa0000760 | Msa1055280 | 0.818233 | 2.181696e-52 | -8.615850e-47 |
| Msa0000760 | Msa1055300 | 0.822403 | 2.414047e-53 | -8.615850e-47 |
| Msa0000760 | Msa1080870 | 0.979555 | 3.162585e-148 | -8.615850e-47 |
| Msa0000760 | Msa1119000 | 0.977160 | 3.140024e-143 | -8.615850e-47 |
| Msa0000760 | Msa1127950 | 0.831371 | 1.734003e-55 | -8.615850e-47 |
| Msa0000760 | Msa1166750 | 0.892708 | 1.237517e-74 | -8.615850e-47 |
| Msa0000760 | Msa1351760 | 0.836415 | 9.485296e-57 | -8.615850e-47 |
| Msa0000760 | Msa1380280 | 0.979062 | 3.763302e-147 | -8.615850e-47 |
| Msa0000760 | Msa1420500 | 0.996635 | 4.014112e-230 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000760 | MtrunA17_Chr7g0267591 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Msa0000760 | MtrunA17_Chr1g0196971 | 50.000 | 206 | 78 | 4 | 66 | 271 | 188 | 368 | 2.18e-59 | 192 |
| Msa0000760 | MtrunA17_Chr7g0266401 | 46.341 | 164 | 78 | 3 | 110 | 272 | 251 | 405 | 9.10e-46 | 158 |
| Msa0000760 | MtrunA17_Chr1g0171871 | 45.062 | 162 | 86 | 2 | 114 | 272 | 203 | 364 | 6.44e-42 | 147 |
| Msa0000760 | MtrunA17_Chr8g0388481 | 40.816 | 196 | 95 | 4 | 84 | 271 | 185 | 367 | 1.99e-41 | 146 |
| Msa0000760 | MtrunA17_Chr8g0352771 | 46.250 | 160 | 75 | 3 | 117 | 272 | 103 | 255 | 8.86e-41 | 141 |
| Msa0000760 | MtrunA17_Chr3g0083531 | 44.872 | 156 | 78 | 3 | 118 | 272 | 113 | 261 | 1.77e-40 | 141 |
| Msa0000760 | MtrunA17_Chr7g0256501 | 45.912 | 159 | 77 | 2 | 116 | 272 | 274 | 425 | 1.23e-39 | 142 |
| Msa0000760 | MtrunA17_Chr8g0392761 | 44.242 | 165 | 85 | 3 | 110 | 271 | 113 | 273 | 7.65e-39 | 137 |
| Msa0000760 | MtrunA17_Chr3g0105871 | 42.405 | 158 | 80 | 3 | 116 | 271 | 84 | 232 | 1.94e-35 | 127 |
| Msa0000760 | MtrunA17_Chr5g0437471 | 44.304 | 158 | 78 | 3 | 115 | 271 | 90 | 238 | 5.03e-35 | 126 |
| Msa0000760 | MtrunA17_Chr7g0217121 | 41.420 | 169 | 86 | 3 | 117 | 272 | 264 | 432 | 2.22e-31 | 120 |
| Msa0000760 | MtrunA17_Chr5g0431071 | 39.490 | 157 | 85 | 3 | 116 | 271 | 106 | 253 | 6.62e-31 | 115 |
| Msa0000760 | MtrunA17_Chr6g0453031 | 41.358 | 162 | 83 | 4 | 123 | 272 | 262 | 423 | 1.55e-30 | 118 |
| Msa0000760 | MtrunA17_Chr3g0113971 | 39.474 | 152 | 80 | 4 | 122 | 271 | 93 | 234 | 7.98e-28 | 107 |
| Msa0000760 | MtrunA17_Chr3g0089011 | 36.601 | 153 | 85 | 4 | 132 | 272 | 2 | 154 | 7.55e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000760 | AT5G06470.1 | 42.435 | 271 | 123 | 5 | 1 | 271 | 1 | 238 | 1.55e-65 | 204 |
| Msa0000760 | AT5G01420.1 | 49.701 | 167 | 73 | 3 | 107 | 271 | 243 | 400 | 1.75e-46 | 160 |
| Msa0000760 | AT4G10630.1 | 43.931 | 173 | 81 | 3 | 110 | 271 | 166 | 333 | 4.71e-44 | 152 |
| Msa0000760 | AT3G11773.1 | 50.000 | 148 | 65 | 2 | 124 | 271 | 11 | 149 | 3.96e-43 | 144 |
| Msa0000760 | AT1G64500.1 | 42.690 | 171 | 88 | 3 | 107 | 271 | 199 | 365 | 8.13e-41 | 145 |
| Msa0000760 | AT5G13810.1 | 46.497 | 157 | 76 | 3 | 116 | 271 | 123 | 272 | 8.48e-41 | 142 |
| Msa0000760 | AT5G03870.1 | 46.707 | 167 | 80 | 3 | 107 | 271 | 224 | 383 | 3.75e-40 | 143 |
| Msa0000760 | AT1G32760.1 | 45.087 | 173 | 84 | 3 | 105 | 271 | 146 | 313 | 1.30e-39 | 140 |
| Msa0000760 | AT3G57070.1 | 42.500 | 160 | 82 | 2 | 116 | 272 | 264 | 416 | 9.16e-39 | 140 |
| Msa0000760 | AT2G41330.1 | 45.161 | 155 | 76 | 2 | 120 | 272 | 254 | 401 | 1.22e-36 | 134 |
| Msa0000760 | AT5G39865.1 | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.72e-32 | 123 |
| Msa0000760 | AT3G11773.2 | 41.358 | 162 | 63 | 3 | 110 | 271 | 70 | 199 | 3.52e-32 | 117 |
| Msa0000760 | AT5G58530.1 | 39.759 | 166 | 81 | 4 | 116 | 271 | 109 | 265 | 2.78e-30 | 114 |
| Msa0000760 | AT3G28850.1 | 37.989 | 179 | 87 | 3 | 118 | 272 | 249 | 427 | 1.48e-29 | 115 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGCTGATGAAGTATT+TGG | 0.240252 | 1_1:-2034257 | Msa0000760:CDS |
| GGGTTGGCTTGGAAAGATTT+TGG | 0.278994 | 1_1:-2034222 | Msa0000760:CDS |
| ACAAGAATTGTGGAATATAT+TGG | 0.291600 | 1_1:-2034327 | Msa0000760:CDS |
| TGTCATGAGTGCAATGAAAA+TGG | 0.303375 | 1_1:-2034053 | Msa0000760:CDS |
| GCTTTGTTTGGAATTGGTTT+TGG | 0.312675 | 1_1:+2034772 | None:intergenic |
| TTGAAGAATAAGGCTTTGTT+TGG | 0.313115 | 1_1:+2034760 | None:intergenic |
| AATAAGGCTTTGTTTGGAAT+TGG | 0.315616 | 1_1:+2034766 | None:intergenic |
| AGCTCAGTAAGGTTATTTAC+TGG | 0.340246 | 1_1:+2034635 | None:intergenic |
| ACCTCGAATCATTTACTTTG+TGG | 0.349053 | 1_1:+2034678 | None:intergenic |
| GAGTGTTGAGTTGAAGAATA+AGG | 0.358573 | 1_1:+2034750 | None:intergenic |
| TCTAGTGATTGTCTTTGTAT+TGG | 0.359751 | 1_1:-2034182 | Msa0000760:CDS |
| GTTATTTACTGGTCCGGATT+GGG | 0.362324 | 1_1:+2034646 | None:intergenic |
| CAACAAGTTTGAGAGGAATA+AGG | 0.368582 | 1_1:-2034445 | Msa0000760:CDS |
| AGTATTTGGTTTGCATGAAA+TGG | 0.370856 | 1_1:-2034243 | Msa0000760:CDS |
| CAAGAATTGTGGAATATATT+GGG | 0.395179 | 1_1:-2034326 | Msa0000760:CDS |
| GGTTATTTACTGGTCCGGAT+TGG | 0.410432 | 1_1:+2034645 | None:intergenic |
| AGTAAGGTTATTTACTGGTC+CGG | 0.418085 | 1_1:+2034640 | None:intergenic |
| TCTTACGAAACATTCATTGT+TGG | 0.427596 | 1_1:+2034076 | None:intergenic |
| AAGAGACGTGTCTCTGGACT+TGG | 0.430407 | 1_1:-2034357 | Msa0000760:CDS |
| GTATTTGGTTTGCATGAAAT+GGG | 0.439941 | 1_1:-2034242 | Msa0000760:CDS |
| TTAAACTTCTCAACAAGAAA+CGG | 0.443285 | 1_1:+2034396 | None:intergenic |
| TCATGAAAGAGACGTGTCTC+TGG | 0.446751 | 1_1:-2034363 | Msa0000760:CDS |
| TACTGGTCCGGATTGGGCCG+AGG | 0.460161 | 1_1:+2034652 | None:intergenic |
| GATTGTCTTTGTATTGGTTG+TGG | 0.460271 | 1_1:-2034176 | Msa0000760:CDS |
| AGGTGGACCTCGGCCCAATC+CGG | 0.462919 | 1_1:-2034659 | Msa0000760:CDS |
| TTGCATGAAATGGGTTGGCT+TGG | 0.477233 | 1_1:-2034233 | Msa0000760:CDS |
| TTGTATTGGTTGTGGCAACA+TGG | 0.495778 | 1_1:-2034168 | Msa0000760:CDS |
| AATCAATTTCTAGCAGCAAA+TGG | 0.503558 | 1_1:+2034016 | None:intergenic |
| TCTTCAAAATCTTTAAGAGA+TGG | 0.511251 | 1_1:+2034509 | None:intergenic |
| TCGTCGAAGAACGGTGAAGT+AGG | 0.513102 | 1_1:+2034701 | None:intergenic |
| TTGGTTTGCATGAAATGGGT+TGG | 0.514916 | 1_1:-2034238 | Msa0000760:CDS |
| TTTATCAAAGGAAGGTACAT+TGG | 0.518107 | 1_1:-2034278 | Msa0000760:CDS |
| GGCTAAACTCTAGCTCAGTA+AGG | 0.526434 | 1_1:+2034624 | None:intergenic |
| ACTATTTGTTCAACTTGTTG+TGG | 0.529923 | 1_1:-2034140 | Msa0000760:CDS |
| ATCAAAGGAAGGTACATTGG+AGG | 0.532217 | 1_1:-2034275 | Msa0000760:CDS |
| ACTTTGTGGTCGTCGAAGAA+CGG | 0.536006 | 1_1:+2034692 | None:intergenic |
| GTCATGAGTGCAATGAAAAT+GGG | 0.536463 | 1_1:-2034052 | Msa0000760:CDS |
| AATGATGTATCTTATCATCA+TGG | 0.540809 | 1_1:+2034597 | None:intergenic |
| TGTATTGGTTGTGGCAACAT+GGG | 0.561860 | 1_1:-2034167 | Msa0000760:CDS |
| GTATCTTATCATCATGGTCA+AGG | 0.566577 | 1_1:+2034603 | None:intergenic |
| CTTTACACAACAAGTTTGAG+AGG | 0.567777 | 1_1:-2034452 | Msa0000760:CDS |
| CGTCGAAGAACGGTGAAGTA+GGG | 0.568611 | 1_1:+2034702 | None:intergenic |
| TGGAATACAGACAAGAATTG+TGG | 0.592485 | 1_1:-2034337 | Msa0000760:CDS |
| TGCAAAGTCTTCATCAACAA+TGG | 0.594691 | 1_1:-2034113 | Msa0000760:CDS |
| ATCGAATTGCTTCCACCTGG+TGG | 0.594982 | 1_1:+2034479 | None:intergenic |
| ACCACAAAGTAAATGATTCG+AGG | 0.595693 | 1_1:-2034679 | Msa0000760:CDS |
| AAATGATTCGAGGTGGACCT+CGG | 0.604520 | 1_1:-2034669 | Msa0000760:CDS |
| TTTGAAGAAAAGTGTCCACC+AGG | 0.627686 | 1_1:-2034494 | Msa0000760:CDS |
| AGACAATCACTAGAAACAGT+TGG | 0.630148 | 1_1:+2034191 | None:intergenic |
| ATGATCGAATTGCTTCCACC+TGG | 0.638579 | 1_1:+2034476 | None:intergenic |
| GAAGAAAAGTGTCCACCAGG+TGG | 0.664756 | 1_1:-2034491 | Msa0000760:CDS |
| ACAAAGTAAATGATTCGAGG+TGG | 0.686682 | 1_1:-2034676 | Msa0000760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATGTATCTTATCATCA+TGG | + | chr1_1:2034252-2034271 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | chr1_1:2034255-2034274 | Msa0000760:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | chr1_1:2034340-2034359 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | chr1_1:2034453-2034472 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | chr1_1:2034519-2034538 | Msa0000760:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | chr1_1:2034520-2034539 | Msa0000760:CDS | 25.0% |
| ! | AATGATGTATCTTATCATCA+TGG | + | chr1_1:2034252-2034271 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | - | chr1_1:2034255-2034274 | Msa0000760:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | + | chr1_1:2034340-2034359 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | + | chr1_1:2034453-2034472 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | - | chr1_1:2034519-2034538 | Msa0000760:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | - | chr1_1:2034520-2034539 | Msa0000760:CDS | 25.0% |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | chr1_1:2034083-2034102 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | chr1_1:2034089-2034108 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | chr1_1:2034121-2034140 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | chr1_1:2034562-2034581 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | chr1_1:2034560-2034579 | Msa0000760:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | chr1_1:2034568-2034587 | Msa0000760:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | chr1_1:2034603-2034622 | Msa0000760:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | chr1_1:2034604-2034623 | Msa0000760:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | chr1_1:2034664-2034683 | Msa0000760:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | chr1_1:2034706-2034725 | Msa0000760:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | chr1_1:2034773-2034792 | None:intergenic | 30.0% | |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | + | chr1_1:2034083-2034102 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | + | chr1_1:2034089-2034108 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | + | chr1_1:2034121-2034140 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | + | chr1_1:2034562-2034581 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | - | chr1_1:2034560-2034579 | Msa0000760:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | - | chr1_1:2034568-2034587 | Msa0000760:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | - | chr1_1:2034603-2034622 | Msa0000760:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | - | chr1_1:2034604-2034623 | Msa0000760:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | - | chr1_1:2034664-2034683 | Msa0000760:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | - | chr1_1:2034706-2034725 | Msa0000760:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | + | chr1_1:2034773-2034792 | None:intergenic | 30.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | chr1_1:2034072-2034091 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | chr1_1:2034073-2034092 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | chr1_1:2034077-2034096 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | chr1_1:2034099-2034118 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | chr1_1:2034167-2034186 | Msa0000760:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | chr1_1:2034171-2034190 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | chr1_1:2034170-2034189 | Msa0000760:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | chr1_1:2034209-2034228 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | chr1_1:2034214-2034233 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | chr1_1:2034246-2034265 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | chr1_1:2034394-2034413 | Msa0000760:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | chr1_1:2034401-2034420 | Msa0000760:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | chr1_1:2034509-2034528 | Msa0000760:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | chr1_1:2034559-2034578 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | chr1_1:2034556-2034575 | Msa0000760:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | chr1_1:2034658-2034677 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | chr1_1:2034670-2034689 | Msa0000760:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | chr1_1:2034733-2034752 | Msa0000760:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | chr1_1:2034793-2034812 | Msa0000760:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | chr1_1:2034794-2034813 | Msa0000760:CDS | 35.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | + | chr1_1:2034072-2034091 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | + | chr1_1:2034073-2034092 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | + | chr1_1:2034077-2034096 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | + | chr1_1:2034099-2034118 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | - | chr1_1:2034167-2034186 | Msa0000760:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | + | chr1_1:2034171-2034190 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | - | chr1_1:2034170-2034189 | Msa0000760:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | + | chr1_1:2034209-2034228 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | + | chr1_1:2034214-2034233 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | + | chr1_1:2034246-2034265 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | - | chr1_1:2034394-2034413 | Msa0000760:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | - | chr1_1:2034401-2034420 | Msa0000760:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | - | chr1_1:2034509-2034528 | Msa0000760:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | + | chr1_1:2034559-2034578 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | - | chr1_1:2034556-2034575 | Msa0000760:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | + | chr1_1:2034658-2034677 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | - | chr1_1:2034670-2034689 | Msa0000760:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | - | chr1_1:2034733-2034752 | Msa0000760:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | - | chr1_1:2034793-2034812 | Msa0000760:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | - | chr1_1:2034794-2034813 | Msa0000760:CDS | 35.0% | |
| GTTATTTACTGGTCCGGATT+GGG | + | chr1_1:2034203-2034222 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | chr1_1:2034352-2034371 | Msa0000760:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | chr1_1:2034571-2034590 | Msa0000760:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | chr1_1:2034608-2034627 | Msa0000760:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | chr1_1:2034628-2034647 | Msa0000760:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | chr1_1:2034678-2034697 | Msa0000760:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | chr1_1:2034679-2034698 | Msa0000760:CDS | 40.0% |
| GTTATTTACTGGTCCGGATT+GGG | + | chr1_1:2034203-2034222 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | - | chr1_1:2034352-2034371 | Msa0000760:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | - | chr1_1:2034571-2034590 | Msa0000760:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | - | chr1_1:2034608-2034627 | Msa0000760:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | - | chr1_1:2034628-2034647 | Msa0000760:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | - | chr1_1:2034678-2034697 | Msa0000760:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | - | chr1_1:2034679-2034698 | Msa0000760:CDS | 40.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | chr1_1:2034157-2034176 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | chr1_1:2034177-2034196 | Msa0000760:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | chr1_1:2034204-2034223 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | chr1_1:2034225-2034244 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | chr1_1:2034373-2034392 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | chr1_1:2034483-2034502 | Msa0000760:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | chr1_1:2034589-2034608 | Msa0000760:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | chr1_1:2034613-2034632 | Msa0000760:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | chr1_1:2034624-2034643 | Msa0000760:CDS | 45.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | + | chr1_1:2034157-2034176 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | - | chr1_1:2034177-2034196 | Msa0000760:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | + | chr1_1:2034204-2034223 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | + | chr1_1:2034225-2034244 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | + | chr1_1:2034373-2034392 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | - | chr1_1:2034483-2034502 | Msa0000760:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | - | chr1_1:2034589-2034608 | Msa0000760:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | - | chr1_1:2034613-2034632 | Msa0000760:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | - | chr1_1:2034624-2034643 | Msa0000760:CDS | 45.0% |
| CGTCGAAGAACGGTGAAGTA+GGG | + | chr1_1:2034147-2034166 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | chr1_1:2034148-2034167 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | chr1_1:2034355-2034374 | Msa0000760:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | chr1_1:2034370-2034389 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | chr1_1:2034489-2034508 | Msa0000760:CDS | 50.0% | |
| CGTCGAAGAACGGTGAAGTA+GGG | + | chr1_1:2034147-2034166 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | + | chr1_1:2034148-2034167 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | - | chr1_1:2034355-2034374 | Msa0000760:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | + | chr1_1:2034370-2034389 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | - | chr1_1:2034489-2034508 | Msa0000760:CDS | 50.0% | |
| AGGTGGACCTCGGCCCAATC+CGG | - | chr1_1:2034187-2034206 | Msa0000760:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | chr1_1:2034197-2034216 | None:intergenic | 65.0% |
| AGGTGGACCTCGGCCCAATC+CGG | - | chr1_1:2034187-2034206 | Msa0000760:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | + | chr1_1:2034197-2034216 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2034025 | 2034843 | 2034025 | ID=Msa0000760;Name=Msa0000760 |
| chr1_1 | mRNA | 2034025 | 2034843 | 2034025 | ID=Msa0000760-mRNA-1;Parent=Msa0000760;Name=Msa0000760-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr1_1 | exon | 2034025 | 2034843 | 2034025 | ID=Msa0000760-mRNA-1:exon:402;Parent=Msa0000760-mRNA-1 |
| chr1_1 | CDS | 2034025 | 2034843 | 2034025 | ID=Msa0000760-mRNA-1:cds;Parent=Msa0000760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
