Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119000 | XP_013450230.1 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119000 | sp|Q9FLE8|Y5986_ARATH | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.69e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119000 | A0A072U534 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa1119000 | 0.977160 | 3.140024e-143 | -8.615850e-47 |
| Msa0072810 | Msa1119000 | 0.809970 | 1.454231e-50 | -8.615850e-47 |
| Msa0103000 | Msa1119000 | 0.811014 | 8.652147e-51 | -8.615850e-47 |
| Msa0110970 | Msa1119000 | 0.812219 | 4.732131e-51 | -8.615850e-47 |
| Msa0147560 | Msa1119000 | 0.805882 | 1.077044e-49 | -8.615850e-47 |
| Msa0197230 | Msa1119000 | 0.820464 | 6.766819e-53 | -8.615850e-47 |
| Msa0387510 | Msa1119000 | 0.808218 | 3.450139e-50 | -8.615850e-47 |
| Msa0450440 | Msa1119000 | 0.804769 | 1.842970e-49 | -8.615850e-47 |
| Msa1012810 | Msa1119000 | 0.800259 | 1.567418e-48 | -8.615850e-47 |
| Msa1014270 | Msa1119000 | 0.810664 | 1.030125e-50 | -8.615850e-47 |
| Msa1040320 | Msa1119000 | 0.815195 | 1.047123e-51 | -8.615850e-47 |
| Msa1055260 | Msa1119000 | 0.813899 | 2.026594e-51 | -8.615850e-47 |
| Msa1055280 | Msa1119000 | 0.818414 | 1.985070e-52 | -8.615850e-47 |
| Msa1055300 | Msa1119000 | 0.814108 | 1.822665e-51 | -8.615850e-47 |
| Msa1080870 | Msa1119000 | 0.989332 | 1.147504e-177 | -8.615850e-47 |
| Msa0238890 | Msa1119000 | 0.820677 | 6.044361e-53 | -8.615850e-47 |
| Msa0239130 | Msa1119000 | 0.801159 | 1.026949e-48 | -8.615850e-47 |
| Msa0289890 | Msa1119000 | 0.823176 | 1.594350e-53 | -8.615850e-47 |
| Msa0306300 | Msa1119000 | 0.815362 | 9.613059e-52 | -8.615850e-47 |
| Msa1119000 | Msa1127950 | 0.823279 | 1.508878e-53 | -8.615850e-47 |
| Msa1119000 | Msa1166750 | 0.897123 | 1.907225e-76 | -8.615850e-47 |
| Msa1119000 | Msa1351760 | 0.829505 | 4.959204e-55 | -8.615850e-47 |
| Msa1119000 | Msa1380280 | 0.988135 | 7.579811e-173 | -8.615850e-47 |
| Msa1119000 | Msa1420500 | 0.979222 | 1.699422e-147 | -8.615850e-47 |
| Msa0510980 | Msa1119000 | 0.809619 | 1.730379e-50 | -8.615850e-47 |
| Msa0872310 | Msa1119000 | 0.808194 | 3.490665e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119000 | MtrunA17_Chr7g0267591 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Msa1119000 | MtrunA17_Chr1g0196971 | 50.000 | 206 | 78 | 4 | 66 | 271 | 188 | 368 | 2.18e-59 | 192 |
| Msa1119000 | MtrunA17_Chr7g0266401 | 46.341 | 164 | 78 | 3 | 110 | 272 | 251 | 405 | 9.10e-46 | 158 |
| Msa1119000 | MtrunA17_Chr1g0171871 | 45.062 | 162 | 86 | 2 | 114 | 272 | 203 | 364 | 6.44e-42 | 147 |
| Msa1119000 | MtrunA17_Chr8g0388481 | 40.816 | 196 | 95 | 4 | 84 | 271 | 185 | 367 | 1.99e-41 | 146 |
| Msa1119000 | MtrunA17_Chr8g0352771 | 46.250 | 160 | 75 | 3 | 117 | 272 | 103 | 255 | 8.86e-41 | 141 |
| Msa1119000 | MtrunA17_Chr3g0083531 | 44.872 | 156 | 78 | 3 | 118 | 272 | 113 | 261 | 1.77e-40 | 141 |
| Msa1119000 | MtrunA17_Chr7g0256501 | 45.912 | 159 | 77 | 2 | 116 | 272 | 274 | 425 | 1.23e-39 | 142 |
| Msa1119000 | MtrunA17_Chr8g0392761 | 44.242 | 165 | 85 | 3 | 110 | 271 | 113 | 273 | 7.65e-39 | 137 |
| Msa1119000 | MtrunA17_Chr3g0105871 | 42.405 | 158 | 80 | 3 | 116 | 271 | 84 | 232 | 1.94e-35 | 127 |
| Msa1119000 | MtrunA17_Chr5g0437471 | 44.304 | 158 | 78 | 3 | 115 | 271 | 90 | 238 | 5.03e-35 | 126 |
| Msa1119000 | MtrunA17_Chr7g0217121 | 41.420 | 169 | 86 | 3 | 117 | 272 | 264 | 432 | 2.22e-31 | 120 |
| Msa1119000 | MtrunA17_Chr5g0431071 | 39.490 | 157 | 85 | 3 | 116 | 271 | 106 | 253 | 6.62e-31 | 115 |
| Msa1119000 | MtrunA17_Chr6g0453031 | 41.358 | 162 | 83 | 4 | 123 | 272 | 262 | 423 | 1.55e-30 | 118 |
| Msa1119000 | MtrunA17_Chr3g0113971 | 39.474 | 152 | 80 | 4 | 122 | 271 | 93 | 234 | 7.98e-28 | 107 |
| Msa1119000 | MtrunA17_Chr3g0089011 | 36.601 | 153 | 85 | 4 | 132 | 272 | 2 | 154 | 7.55e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119000 | AT5G06470.1 | 42.435 | 271 | 123 | 5 | 1 | 271 | 1 | 238 | 1.55e-65 | 204 |
| Msa1119000 | AT5G01420.1 | 49.701 | 167 | 73 | 3 | 107 | 271 | 243 | 400 | 1.75e-46 | 160 |
| Msa1119000 | AT4G10630.1 | 43.931 | 173 | 81 | 3 | 110 | 271 | 166 | 333 | 4.71e-44 | 152 |
| Msa1119000 | AT3G11773.1 | 50.000 | 148 | 65 | 2 | 124 | 271 | 11 | 149 | 3.96e-43 | 144 |
| Msa1119000 | AT1G64500.1 | 42.690 | 171 | 88 | 3 | 107 | 271 | 199 | 365 | 8.13e-41 | 145 |
| Msa1119000 | AT5G13810.1 | 46.497 | 157 | 76 | 3 | 116 | 271 | 123 | 272 | 8.48e-41 | 142 |
| Msa1119000 | AT5G03870.1 | 46.707 | 167 | 80 | 3 | 107 | 271 | 224 | 383 | 3.75e-40 | 143 |
| Msa1119000 | AT1G32760.1 | 45.087 | 173 | 84 | 3 | 105 | 271 | 146 | 313 | 1.30e-39 | 140 |
| Msa1119000 | AT3G57070.1 | 42.500 | 160 | 82 | 2 | 116 | 272 | 264 | 416 | 9.16e-39 | 140 |
| Msa1119000 | AT2G41330.1 | 45.161 | 155 | 76 | 2 | 120 | 272 | 254 | 401 | 1.22e-36 | 134 |
| Msa1119000 | AT5G39865.1 | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.72e-32 | 123 |
| Msa1119000 | AT3G11773.2 | 41.358 | 162 | 63 | 3 | 110 | 271 | 70 | 199 | 3.52e-32 | 117 |
| Msa1119000 | AT5G58530.1 | 39.759 | 166 | 81 | 4 | 116 | 271 | 109 | 265 | 2.78e-30 | 114 |
| Msa1119000 | AT3G28850.1 | 37.989 | 179 | 87 | 3 | 118 | 272 | 249 | 427 | 1.48e-29 | 115 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGCTGATGAAGTATT+TGG | 0.240252 | 7_3:+67862623 | Msa1119000:CDS |
| GGGTTGGCTTGGAAAGATTT+TGG | 0.278994 | 7_3:+67862658 | Msa1119000:CDS |
| ACAAGAATTGTGGAATATAT+TGG | 0.291600 | 7_3:+67862553 | Msa1119000:CDS |
| TGTCATGAGTGCAATGAAAA+TGG | 0.303375 | 7_3:+67862827 | Msa1119000:CDS |
| GCTTTGTTTGGAATTGGTTT+TGG | 0.312675 | 7_3:-67862108 | None:intergenic |
| TTGAAGAATAAGGCTTTGTT+TGG | 0.313115 | 7_3:-67862120 | None:intergenic |
| AATAAGGCTTTGTTTGGAAT+TGG | 0.315616 | 7_3:-67862114 | None:intergenic |
| AGCTCAGTAAGGTTATTTAC+TGG | 0.340246 | 7_3:-67862245 | None:intergenic |
| ACCTCGAATCATTTACTTTG+TGG | 0.349053 | 7_3:-67862202 | None:intergenic |
| GAGTGTTGAGTTGAAGAATA+AGG | 0.358573 | 7_3:-67862130 | None:intergenic |
| TCTAGTGATTGTCTTTGTAT+TGG | 0.359751 | 7_3:+67862698 | Msa1119000:CDS |
| GTTATTTACTGGTCCGGATT+GGG | 0.362324 | 7_3:-67862234 | None:intergenic |
| CAACAAGTTTGAGAGGAATA+AGG | 0.368582 | 7_3:+67862435 | Msa1119000:CDS |
| AGTATTTGGTTTGCATGAAA+TGG | 0.370856 | 7_3:+67862637 | Msa1119000:CDS |
| CAAGAATTGTGGAATATATT+GGG | 0.395179 | 7_3:+67862554 | Msa1119000:CDS |
| GGTTATTTACTGGTCCGGAT+TGG | 0.410432 | 7_3:-67862235 | None:intergenic |
| AGTAAGGTTATTTACTGGTC+CGG | 0.418085 | 7_3:-67862240 | None:intergenic |
| TCTTACGAAACATTCATTGT+TGG | 0.427596 | 7_3:-67862804 | None:intergenic |
| AAGAGACGTGTCTCTGGACT+TGG | 0.430407 | 7_3:+67862523 | Msa1119000:CDS |
| GTATTTGGTTTGCATGAAAT+GGG | 0.439941 | 7_3:+67862638 | Msa1119000:CDS |
| TTAAACTTCTCAACAAGAAA+CGG | 0.443285 | 7_3:-67862484 | None:intergenic |
| TCATGAAAGAGACGTGTCTC+TGG | 0.446751 | 7_3:+67862517 | Msa1119000:CDS |
| TACTGGTCCGGATTGGGCCG+AGG | 0.460161 | 7_3:-67862228 | None:intergenic |
| GATTGTCTTTGTATTGGTTG+TGG | 0.460271 | 7_3:+67862704 | Msa1119000:CDS |
| AGGTGGACCTCGGCCCAATC+CGG | 0.462919 | 7_3:+67862221 | Msa1119000:CDS |
| TTGCATGAAATGGGTTGGCT+TGG | 0.477233 | 7_3:+67862647 | Msa1119000:CDS |
| TTGTATTGGTTGTGGCAACA+TGG | 0.495778 | 7_3:+67862712 | Msa1119000:CDS |
| AATCAATTTCTAGCAGCAAA+TGG | 0.503558 | 7_3:-67862864 | None:intergenic |
| TCTTCAAAATCTTTAAGAGA+TGG | 0.511251 | 7_3:-67862371 | None:intergenic |
| TCGTCGAAGAACGGTGAAGT+AGG | 0.513102 | 7_3:-67862179 | None:intergenic |
| TTGGTTTGCATGAAATGGGT+TGG | 0.514916 | 7_3:+67862642 | Msa1119000:CDS |
| TTTATCAAAGGAAGGTACAT+TGG | 0.518107 | 7_3:+67862602 | Msa1119000:CDS |
| GGCTAAACTCTAGCTCAGTA+AGG | 0.526434 | 7_3:-67862256 | None:intergenic |
| ACTATTTGTTCAACTTGTTG+TGG | 0.529923 | 7_3:+67862740 | Msa1119000:CDS |
| ATCAAAGGAAGGTACATTGG+AGG | 0.532217 | 7_3:+67862605 | Msa1119000:CDS |
| ACTTTGTGGTCGTCGAAGAA+CGG | 0.536006 | 7_3:-67862188 | None:intergenic |
| GTCATGAGTGCAATGAAAAT+GGG | 0.536463 | 7_3:+67862828 | Msa1119000:CDS |
| AATGATGTATCTTATCATCA+TGG | 0.540809 | 7_3:-67862283 | None:intergenic |
| TGTATTGGTTGTGGCAACAT+GGG | 0.561860 | 7_3:+67862713 | Msa1119000:CDS |
| GTATCTTATCATCATGGTCA+AGG | 0.566577 | 7_3:-67862277 | None:intergenic |
| CTTTACACAACAAGTTTGAG+AGG | 0.567777 | 7_3:+67862428 | Msa1119000:CDS |
| CGTCGAAGAACGGTGAAGTA+GGG | 0.568611 | 7_3:-67862178 | None:intergenic |
| TGGAATACAGACAAGAATTG+TGG | 0.592485 | 7_3:+67862543 | Msa1119000:CDS |
| TGCAAAGTCTTCATCAACAA+TGG | 0.594691 | 7_3:+67862767 | Msa1119000:CDS |
| ATCGAATTGCTTCCACCTGG+TGG | 0.594982 | 7_3:-67862401 | None:intergenic |
| ACCACAAAGTAAATGATTCG+AGG | 0.595693 | 7_3:+67862201 | Msa1119000:CDS |
| AAATGATTCGAGGTGGACCT+CGG | 0.604520 | 7_3:+67862211 | Msa1119000:CDS |
| TTTGAAGAAAAGTGTCCACC+AGG | 0.627686 | 7_3:+67862386 | Msa1119000:CDS |
| AGACAATCACTAGAAACAGT+TGG | 0.630148 | 7_3:-67862689 | None:intergenic |
| ATGATCGAATTGCTTCCACC+TGG | 0.638579 | 7_3:-67862404 | None:intergenic |
| GAAGAAAAGTGTCCACCAGG+TGG | 0.664756 | 7_3:+67862389 | Msa1119000:CDS |
| ACAAAGTAAATGATTCGAGG+TGG | 0.686682 | 7_3:+67862204 | Msa1119000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATGTATCTTATCATCA+TGG | - | chr7_3:67862286-67862305 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | + | chr7_3:67862289-67862308 | Msa1119000:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | - | chr7_3:67862374-67862393 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | - | chr7_3:67862487-67862506 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | + | chr7_3:67862553-67862572 | Msa1119000:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | + | chr7_3:67862554-67862573 | Msa1119000:CDS | 25.0% |
| ! | AATGATGTATCTTATCATCA+TGG | - | chr7_3:67862286-67862305 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | + | chr7_3:67862289-67862308 | Msa1119000:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | - | chr7_3:67862374-67862393 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | - | chr7_3:67862487-67862506 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | + | chr7_3:67862553-67862572 | Msa1119000:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | + | chr7_3:67862554-67862573 | Msa1119000:CDS | 25.0% |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | - | chr7_3:67862117-67862136 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | - | chr7_3:67862123-67862142 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | - | chr7_3:67862155-67862174 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | - | chr7_3:67862596-67862615 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | + | chr7_3:67862594-67862613 | Msa1119000:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | + | chr7_3:67862602-67862621 | Msa1119000:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | + | chr7_3:67862637-67862656 | Msa1119000:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | + | chr7_3:67862638-67862657 | Msa1119000:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | + | chr7_3:67862698-67862717 | Msa1119000:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | + | chr7_3:67862740-67862759 | Msa1119000:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | - | chr7_3:67862807-67862826 | None:intergenic | 30.0% | |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | - | chr7_3:67862117-67862136 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | - | chr7_3:67862123-67862142 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | - | chr7_3:67862155-67862174 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | - | chr7_3:67862596-67862615 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | + | chr7_3:67862594-67862613 | Msa1119000:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | + | chr7_3:67862602-67862621 | Msa1119000:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | + | chr7_3:67862637-67862656 | Msa1119000:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | + | chr7_3:67862638-67862657 | Msa1119000:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | + | chr7_3:67862698-67862717 | Msa1119000:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | + | chr7_3:67862740-67862759 | Msa1119000:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | - | chr7_3:67862807-67862826 | None:intergenic | 30.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | - | chr7_3:67862106-67862125 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | - | chr7_3:67862107-67862126 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | - | chr7_3:67862111-67862130 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | - | chr7_3:67862133-67862152 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | + | chr7_3:67862201-67862220 | Msa1119000:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | - | chr7_3:67862205-67862224 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | + | chr7_3:67862204-67862223 | Msa1119000:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | - | chr7_3:67862243-67862262 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | - | chr7_3:67862248-67862267 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | - | chr7_3:67862280-67862299 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | + | chr7_3:67862428-67862447 | Msa1119000:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | + | chr7_3:67862435-67862454 | Msa1119000:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | + | chr7_3:67862543-67862562 | Msa1119000:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | - | chr7_3:67862593-67862612 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | + | chr7_3:67862590-67862609 | Msa1119000:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | - | chr7_3:67862692-67862711 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | + | chr7_3:67862704-67862723 | Msa1119000:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | + | chr7_3:67862767-67862786 | Msa1119000:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | + | chr7_3:67862827-67862846 | Msa1119000:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | + | chr7_3:67862828-67862847 | Msa1119000:CDS | 35.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | - | chr7_3:67862106-67862125 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | - | chr7_3:67862107-67862126 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | - | chr7_3:67862111-67862130 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | - | chr7_3:67862133-67862152 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | + | chr7_3:67862201-67862220 | Msa1119000:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | - | chr7_3:67862205-67862224 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | + | chr7_3:67862204-67862223 | Msa1119000:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | - | chr7_3:67862243-67862262 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | - | chr7_3:67862248-67862267 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | - | chr7_3:67862280-67862299 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | + | chr7_3:67862428-67862447 | Msa1119000:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | + | chr7_3:67862435-67862454 | Msa1119000:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | + | chr7_3:67862543-67862562 | Msa1119000:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | - | chr7_3:67862593-67862612 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | + | chr7_3:67862590-67862609 | Msa1119000:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | - | chr7_3:67862692-67862711 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | + | chr7_3:67862704-67862723 | Msa1119000:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | + | chr7_3:67862767-67862786 | Msa1119000:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | + | chr7_3:67862827-67862846 | Msa1119000:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | + | chr7_3:67862828-67862847 | Msa1119000:CDS | 35.0% | |
| GTTATTTACTGGTCCGGATT+GGG | - | chr7_3:67862237-67862256 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | + | chr7_3:67862386-67862405 | Msa1119000:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | + | chr7_3:67862605-67862624 | Msa1119000:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | + | chr7_3:67862642-67862661 | Msa1119000:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | + | chr7_3:67862662-67862681 | Msa1119000:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | + | chr7_3:67862712-67862731 | Msa1119000:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | + | chr7_3:67862713-67862732 | Msa1119000:CDS | 40.0% |
| GTTATTTACTGGTCCGGATT+GGG | - | chr7_3:67862237-67862256 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | + | chr7_3:67862386-67862405 | Msa1119000:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | + | chr7_3:67862605-67862624 | Msa1119000:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | + | chr7_3:67862642-67862661 | Msa1119000:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | + | chr7_3:67862662-67862681 | Msa1119000:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | + | chr7_3:67862712-67862731 | Msa1119000:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | + | chr7_3:67862713-67862732 | Msa1119000:CDS | 40.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | - | chr7_3:67862191-67862210 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | + | chr7_3:67862211-67862230 | Msa1119000:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | - | chr7_3:67862238-67862257 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | - | chr7_3:67862259-67862278 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | - | chr7_3:67862407-67862426 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | + | chr7_3:67862517-67862536 | Msa1119000:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | + | chr7_3:67862623-67862642 | Msa1119000:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | + | chr7_3:67862647-67862666 | Msa1119000:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | + | chr7_3:67862658-67862677 | Msa1119000:CDS | 45.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | - | chr7_3:67862191-67862210 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | + | chr7_3:67862211-67862230 | Msa1119000:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | - | chr7_3:67862238-67862257 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | - | chr7_3:67862259-67862278 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | - | chr7_3:67862407-67862426 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | + | chr7_3:67862517-67862536 | Msa1119000:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | + | chr7_3:67862623-67862642 | Msa1119000:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | + | chr7_3:67862647-67862666 | Msa1119000:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | + | chr7_3:67862658-67862677 | Msa1119000:CDS | 45.0% |
| CGTCGAAGAACGGTGAAGTA+GGG | - | chr7_3:67862181-67862200 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | - | chr7_3:67862182-67862201 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | + | chr7_3:67862389-67862408 | Msa1119000:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | - | chr7_3:67862404-67862423 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | + | chr7_3:67862523-67862542 | Msa1119000:CDS | 50.0% | |
| CGTCGAAGAACGGTGAAGTA+GGG | - | chr7_3:67862181-67862200 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | - | chr7_3:67862182-67862201 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | + | chr7_3:67862389-67862408 | Msa1119000:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | - | chr7_3:67862404-67862423 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | + | chr7_3:67862523-67862542 | Msa1119000:CDS | 50.0% | |
| AGGTGGACCTCGGCCCAATC+CGG | + | chr7_3:67862221-67862240 | Msa1119000:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | - | chr7_3:67862231-67862250 | None:intergenic | 65.0% |
| AGGTGGACCTCGGCCCAATC+CGG | + | chr7_3:67862221-67862240 | Msa1119000:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | - | chr7_3:67862231-67862250 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 67862059 | 67862877 | 67862059 | ID=Msa1119000;Name=Msa1119000 |
| chr7_3 | mRNA | 67862059 | 67862877 | 67862059 | ID=Msa1119000-mRNA-1;Parent=Msa1119000;Name=Msa1119000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|272 |
| chr7_3 | exon | 67862059 | 67862877 | 67862059 | ID=Msa1119000-mRNA-1:exon:16760;Parent=Msa1119000-mRNA-1 |
| chr7_3 | CDS | 67862059 | 67862877 | 67862059 | ID=Msa1119000-mRNA-1:cds;Parent=Msa1119000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
