Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380280 | XP_013450230.1 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380280 | sp|Q9FLE8|Y5986_ARATH | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.69e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380280 | A0A072U534 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000760 | Msa1380280 | 0.979062 | 3.763302e-147 | -8.615850e-47 |
| Msa0072810 | Msa1380280 | 0.800172 | 1.632505e-48 | -8.615850e-47 |
| Msa0103000 | Msa1380280 | 0.807939 | 3.956814e-50 | -8.615850e-47 |
| Msa0110970 | Msa1380280 | 0.821452 | 4.008481e-53 | -8.615850e-47 |
| Msa1351760 | Msa1380280 | 0.833220 | 6.042098e-56 | -8.615850e-47 |
| Msa1380280 | Msa1420500 | 0.976560 | 4.640036e-142 | -8.615850e-47 |
| Msa1380280 | Msa1438740 | 0.811248 | 7.697155e-51 | -8.615850e-47 |
| Msa0650090 | Msa1380280 | 0.801896 | 7.253702e-49 | -8.615850e-47 |
| Msa0147560 | Msa1380280 | 0.809409 | 1.919658e-50 | -8.615850e-47 |
| Msa0197230 | Msa1380280 | 0.828405 | 9.155769e-55 | -8.615850e-47 |
| Msa0387510 | Msa1380280 | 0.815099 | 1.099577e-51 | -8.615850e-47 |
| Msa0450440 | Msa1380280 | 0.812278 | 4.593586e-51 | -8.615850e-47 |
| Msa1014270 | Msa1380280 | 0.807113 | 5.924237e-50 | -8.615850e-47 |
| Msa1040320 | Msa1380280 | 0.814007 | 1.918152e-51 | -8.615850e-47 |
| Msa1055260 | Msa1380280 | 0.812584 | 3.938541e-51 | -8.615850e-47 |
| Msa1055280 | Msa1380280 | 0.818500 | 1.897380e-52 | -8.615850e-47 |
| Msa1055300 | Msa1380280 | 0.826797 | 2.227379e-54 | -8.615850e-47 |
| Msa1080870 | Msa1380280 | 0.999198 | 1.809173e-295 | -8.615850e-47 |
| Msa0238890 | Msa1380280 | 0.822473 | 2.324763e-53 | -8.615850e-47 |
| Msa0239130 | Msa1380280 | 0.806559 | 7.754617e-50 | -8.615850e-47 |
| Msa0289890 | Msa1380280 | 0.828174 | 1.041216e-54 | -8.615850e-47 |
| Msa0306300 | Msa1380280 | 0.825572 | 4.356204e-54 | -8.615850e-47 |
| Msa1119000 | Msa1380280 | 0.988135 | 7.579811e-173 | -8.615850e-47 |
| Msa1127950 | Msa1380280 | 0.822975 | 1.776771e-53 | -8.615850e-47 |
| Msa1166750 | Msa1380280 | 0.893993 | 3.744737e-75 | -8.615850e-47 |
| Msa0510980 | Msa1380280 | 0.814363 | 1.600688e-51 | -8.615850e-47 |
| Msa0872310 | Msa1380280 | 0.803732 | 3.029225e-49 | -8.615850e-47 |
| Msa0977320 | Msa1380280 | 0.807282 | 5.453511e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380280 | MtrunA17_Chr7g0267591 | 93.548 | 279 | 11 | 3 | 1 | 272 | 1 | 279 | 0.0 | 528 |
| Msa1380280 | MtrunA17_Chr1g0196971 | 50.000 | 206 | 78 | 4 | 66 | 271 | 188 | 368 | 2.18e-59 | 192 |
| Msa1380280 | MtrunA17_Chr7g0266401 | 46.341 | 164 | 78 | 3 | 110 | 272 | 251 | 405 | 9.10e-46 | 158 |
| Msa1380280 | MtrunA17_Chr1g0171871 | 45.062 | 162 | 86 | 2 | 114 | 272 | 203 | 364 | 6.44e-42 | 147 |
| Msa1380280 | MtrunA17_Chr8g0388481 | 40.816 | 196 | 95 | 4 | 84 | 271 | 185 | 367 | 1.99e-41 | 146 |
| Msa1380280 | MtrunA17_Chr8g0352771 | 46.250 | 160 | 75 | 3 | 117 | 272 | 103 | 255 | 8.86e-41 | 141 |
| Msa1380280 | MtrunA17_Chr3g0083531 | 44.872 | 156 | 78 | 3 | 118 | 272 | 113 | 261 | 1.77e-40 | 141 |
| Msa1380280 | MtrunA17_Chr7g0256501 | 45.912 | 159 | 77 | 2 | 116 | 272 | 274 | 425 | 1.23e-39 | 142 |
| Msa1380280 | MtrunA17_Chr8g0392761 | 44.242 | 165 | 85 | 3 | 110 | 271 | 113 | 273 | 7.65e-39 | 137 |
| Msa1380280 | MtrunA17_Chr3g0105871 | 42.405 | 158 | 80 | 3 | 116 | 271 | 84 | 232 | 1.94e-35 | 127 |
| Msa1380280 | MtrunA17_Chr5g0437471 | 44.304 | 158 | 78 | 3 | 115 | 271 | 90 | 238 | 5.03e-35 | 126 |
| Msa1380280 | MtrunA17_Chr7g0217121 | 41.420 | 169 | 86 | 3 | 117 | 272 | 264 | 432 | 2.22e-31 | 120 |
| Msa1380280 | MtrunA17_Chr5g0431071 | 39.490 | 157 | 85 | 3 | 116 | 271 | 106 | 253 | 6.62e-31 | 115 |
| Msa1380280 | MtrunA17_Chr6g0453031 | 41.358 | 162 | 83 | 4 | 123 | 272 | 262 | 423 | 1.55e-30 | 118 |
| Msa1380280 | MtrunA17_Chr3g0113971 | 39.474 | 152 | 80 | 4 | 122 | 271 | 93 | 234 | 7.98e-28 | 107 |
| Msa1380280 | MtrunA17_Chr3g0089011 | 36.601 | 153 | 85 | 4 | 132 | 272 | 2 | 154 | 7.55e-23 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380280 | AT5G06470.1 | 42.435 | 271 | 123 | 5 | 1 | 271 | 1 | 238 | 1.55e-65 | 204 |
| Msa1380280 | AT5G01420.1 | 49.701 | 167 | 73 | 3 | 107 | 271 | 243 | 400 | 1.75e-46 | 160 |
| Msa1380280 | AT4G10630.1 | 43.931 | 173 | 81 | 3 | 110 | 271 | 166 | 333 | 4.71e-44 | 152 |
| Msa1380280 | AT3G11773.1 | 50.000 | 148 | 65 | 2 | 124 | 271 | 11 | 149 | 3.96e-43 | 144 |
| Msa1380280 | AT1G64500.1 | 42.690 | 171 | 88 | 3 | 107 | 271 | 199 | 365 | 8.13e-41 | 145 |
| Msa1380280 | AT5G13810.1 | 46.497 | 157 | 76 | 3 | 116 | 271 | 123 | 272 | 8.48e-41 | 142 |
| Msa1380280 | AT5G03870.1 | 46.707 | 167 | 80 | 3 | 107 | 271 | 224 | 383 | 3.75e-40 | 143 |
| Msa1380280 | AT1G32760.1 | 45.087 | 173 | 84 | 3 | 105 | 271 | 146 | 313 | 1.30e-39 | 140 |
| Msa1380280 | AT3G57070.1 | 42.500 | 160 | 82 | 2 | 116 | 272 | 264 | 416 | 9.16e-39 | 140 |
| Msa1380280 | AT2G41330.1 | 45.161 | 155 | 76 | 2 | 120 | 272 | 254 | 401 | 1.22e-36 | 134 |
| Msa1380280 | AT5G39865.1 | 39.645 | 169 | 86 | 4 | 118 | 272 | 223 | 389 | 1.72e-32 | 123 |
| Msa1380280 | AT3G11773.2 | 41.358 | 162 | 63 | 3 | 110 | 271 | 70 | 199 | 3.52e-32 | 117 |
| Msa1380280 | AT5G58530.1 | 39.759 | 166 | 81 | 4 | 116 | 271 | 109 | 265 | 2.78e-30 | 114 |
| Msa1380280 | AT3G28850.1 | 37.989 | 179 | 87 | 3 | 118 | 272 | 249 | 427 | 1.48e-29 | 115 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGAGCTGATGAAGTATT+TGG | 0.240252 | tig0020342:+14417 | Msa1380280:CDS |
| GGGTTGGCTTGGAAAGATTT+TGG | 0.278994 | tig0020342:+14452 | Msa1380280:CDS |
| ACAAGAATTGTGGAATATAT+TGG | 0.291600 | tig0020342:+14347 | Msa1380280:CDS |
| TGTCATGAGTGCAATGAAAA+TGG | 0.303375 | tig0020342:+14621 | Msa1380280:CDS |
| GCTTTGTTTGGAATTGGTTT+TGG | 0.312675 | tig0020342:-13902 | None:intergenic |
| TTGAAGAATAAGGCTTTGTT+TGG | 0.313115 | tig0020342:-13914 | None:intergenic |
| AATAAGGCTTTGTTTGGAAT+TGG | 0.315616 | tig0020342:-13908 | None:intergenic |
| AGCTCAGTAAGGTTATTTAC+TGG | 0.340246 | tig0020342:-14039 | None:intergenic |
| ACCTCGAATCATTTACTTTG+TGG | 0.349053 | tig0020342:-13996 | None:intergenic |
| GAGTGTTGAGTTGAAGAATA+AGG | 0.358573 | tig0020342:-13924 | None:intergenic |
| TCTAGTGATTGTCTTTGTAT+TGG | 0.359751 | tig0020342:+14492 | Msa1380280:CDS |
| GTTATTTACTGGTCCGGATT+GGG | 0.362324 | tig0020342:-14028 | None:intergenic |
| CAACAAGTTTGAGAGGAATA+AGG | 0.368582 | tig0020342:+14229 | Msa1380280:CDS |
| AGTATTTGGTTTGCATGAAA+TGG | 0.370856 | tig0020342:+14431 | Msa1380280:CDS |
| CAAGAATTGTGGAATATATT+GGG | 0.395179 | tig0020342:+14348 | Msa1380280:CDS |
| GGTTATTTACTGGTCCGGAT+TGG | 0.410432 | tig0020342:-14029 | None:intergenic |
| AGTAAGGTTATTTACTGGTC+CGG | 0.418085 | tig0020342:-14034 | None:intergenic |
| TCTTACGAAACATTCATTGT+TGG | 0.427596 | tig0020342:-14598 | None:intergenic |
| AAGAGACGTGTCTCTGGACT+TGG | 0.430407 | tig0020342:+14317 | Msa1380280:CDS |
| GTATTTGGTTTGCATGAAAT+GGG | 0.439941 | tig0020342:+14432 | Msa1380280:CDS |
| TTAAACTTCTCAACAAGAAA+CGG | 0.443285 | tig0020342:-14278 | None:intergenic |
| TCATGAAAGAGACGTGTCTC+TGG | 0.446751 | tig0020342:+14311 | Msa1380280:CDS |
| TACTGGTCCGGATTGGGCCG+AGG | 0.460161 | tig0020342:-14022 | None:intergenic |
| GATTGTCTTTGTATTGGTTG+TGG | 0.460271 | tig0020342:+14498 | Msa1380280:CDS |
| AGGTGGACCTCGGCCCAATC+CGG | 0.462919 | tig0020342:+14015 | Msa1380280:CDS |
| TTGCATGAAATGGGTTGGCT+TGG | 0.477233 | tig0020342:+14441 | Msa1380280:CDS |
| TTGTATTGGTTGTGGCAACA+TGG | 0.495778 | tig0020342:+14506 | Msa1380280:CDS |
| AATCAATTTCTAGCAGCAAA+TGG | 0.503558 | tig0020342:-14658 | None:intergenic |
| TCTTCAAAATCTTTAAGAGA+TGG | 0.511251 | tig0020342:-14165 | None:intergenic |
| TCGTCGAAGAACGGTGAAGT+AGG | 0.513102 | tig0020342:-13973 | None:intergenic |
| TTGGTTTGCATGAAATGGGT+TGG | 0.514916 | tig0020342:+14436 | Msa1380280:CDS |
| TTTATCAAAGGAAGGTACAT+TGG | 0.518107 | tig0020342:+14396 | Msa1380280:CDS |
| GGCTAAACTCTAGCTCAGTA+AGG | 0.526434 | tig0020342:-14050 | None:intergenic |
| ACTATTTGTTCAACTTGTTG+TGG | 0.529923 | tig0020342:+14534 | Msa1380280:CDS |
| ATCAAAGGAAGGTACATTGG+AGG | 0.532217 | tig0020342:+14399 | Msa1380280:CDS |
| ACTTTGTGGTCGTCGAAGAA+CGG | 0.536006 | tig0020342:-13982 | None:intergenic |
| GTCATGAGTGCAATGAAAAT+GGG | 0.536463 | tig0020342:+14622 | Msa1380280:CDS |
| AATGATGTATCTTATCATCA+TGG | 0.540809 | tig0020342:-14077 | None:intergenic |
| TGTATTGGTTGTGGCAACAT+GGG | 0.561860 | tig0020342:+14507 | Msa1380280:CDS |
| GTATCTTATCATCATGGTCA+AGG | 0.566577 | tig0020342:-14071 | None:intergenic |
| CTTTACACAACAAGTTTGAG+AGG | 0.567777 | tig0020342:+14222 | Msa1380280:CDS |
| CGTCGAAGAACGGTGAAGTA+GGG | 0.568611 | tig0020342:-13972 | None:intergenic |
| TGGAATACAGACAAGAATTG+TGG | 0.592485 | tig0020342:+14337 | Msa1380280:CDS |
| TGCAAAGTCTTCATCAACAA+TGG | 0.594691 | tig0020342:+14561 | Msa1380280:CDS |
| ATCGAATTGCTTCCACCTGG+TGG | 0.594982 | tig0020342:-14195 | None:intergenic |
| ACCACAAAGTAAATGATTCG+AGG | 0.595693 | tig0020342:+13995 | Msa1380280:CDS |
| AAATGATTCGAGGTGGACCT+CGG | 0.604520 | tig0020342:+14005 | Msa1380280:CDS |
| TTTGAAGAAAAGTGTCCACC+AGG | 0.627686 | tig0020342:+14180 | Msa1380280:CDS |
| AGACAATCACTAGAAACAGT+TGG | 0.630148 | tig0020342:-14483 | None:intergenic |
| ATGATCGAATTGCTTCCACC+TGG | 0.638579 | tig0020342:-14198 | None:intergenic |
| GAAGAAAAGTGTCCACCAGG+TGG | 0.664756 | tig0020342:+14183 | Msa1380280:CDS |
| ACAAAGTAAATGATTCGAGG+TGG | 0.686682 | tig0020342:+13998 | Msa1380280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGATGTATCTTATCATCA+TGG | - | tig0020342:14080-14099 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | + | tig0020342:14083-14102 | Msa1380280:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | - | tig0020342:14168-14187 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | - | tig0020342:14281-14300 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | + | tig0020342:14347-14366 | Msa1380280:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | + | tig0020342:14348-14367 | Msa1380280:CDS | 25.0% |
| ! | AATGATGTATCTTATCATCA+TGG | - | tig0020342:14080-14099 | None:intergenic | 25.0% |
| !! | TGATAAGATACATCATTTTG+AGG | + | tig0020342:14083-14102 | Msa1380280:CDS | 25.0% |
| !! | TCTTCAAAATCTTTAAGAGA+TGG | - | tig0020342:14168-14187 | None:intergenic | 25.0% |
| ! | TTAAACTTCTCAACAAGAAA+CGG | - | tig0020342:14281-14300 | None:intergenic | 25.0% |
| ! | ACAAGAATTGTGGAATATAT+TGG | + | tig0020342:14347-14366 | Msa1380280:CDS | 25.0% |
| ! | CAAGAATTGTGGAATATATT+GGG | + | tig0020342:14348-14367 | Msa1380280:CDS | 25.0% |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | - | tig0020342:13911-13930 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | - | tig0020342:13917-13936 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | - | tig0020342:13949-13968 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | - | tig0020342:14390-14409 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | + | tig0020342:14388-14407 | Msa1380280:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | + | tig0020342:14396-14415 | Msa1380280:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | + | tig0020342:14431-14450 | Msa1380280:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | + | tig0020342:14432-14451 | Msa1380280:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | + | tig0020342:14492-14511 | Msa1380280:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | + | tig0020342:14534-14553 | Msa1380280:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | - | tig0020342:14601-14620 | None:intergenic | 30.0% | |
| !! | AATAAGGCTTTGTTTGGAAT+TGG | - | tig0020342:13911-13930 | None:intergenic | 30.0% |
| !! | TTGAAGAATAAGGCTTTGTT+TGG | - | tig0020342:13917-13936 | None:intergenic | 30.0% |
| ! | TTTTGAATGCAGAACATATC+TGG | - | tig0020342:13949-13968 | None:intergenic | 30.0% |
| CTTCCTTTGATAAAAAGCTT+TGG | - | tig0020342:14390-14409 | None:intergenic | 30.0% | |
| ! | CAAAGCTTTTTATCAAAGGA+AGG | + | tig0020342:14388-14407 | Msa1380280:CDS | 30.0% |
| ! | TTTATCAAAGGAAGGTACAT+TGG | + | tig0020342:14396-14415 | Msa1380280:CDS | 30.0% |
| !! | AGTATTTGGTTTGCATGAAA+TGG | + | tig0020342:14431-14450 | Msa1380280:CDS | 30.0% |
| !! | GTATTTGGTTTGCATGAAAT+GGG | + | tig0020342:14432-14451 | Msa1380280:CDS | 30.0% |
| TCTAGTGATTGTCTTTGTAT+TGG | + | tig0020342:14492-14511 | Msa1380280:CDS | 30.0% | |
| !! | ACTATTTGTTCAACTTGTTG+TGG | + | tig0020342:14534-14553 | Msa1380280:CDS | 30.0% |
| TCTTACGAAACATTCATTGT+TGG | - | tig0020342:14601-14620 | None:intergenic | 30.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | - | tig0020342:13900-13919 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | - | tig0020342:13901-13920 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | - | tig0020342:13905-13924 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | - | tig0020342:13927-13946 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | + | tig0020342:13995-14014 | Msa1380280:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | - | tig0020342:13999-14018 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | + | tig0020342:13998-14017 | Msa1380280:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | - | tig0020342:14037-14056 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | - | tig0020342:14042-14061 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | - | tig0020342:14074-14093 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | + | tig0020342:14222-14241 | Msa1380280:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | + | tig0020342:14229-14248 | Msa1380280:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | + | tig0020342:14337-14356 | Msa1380280:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | - | tig0020342:14387-14406 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | + | tig0020342:14384-14403 | Msa1380280:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | - | tig0020342:14486-14505 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | + | tig0020342:14498-14517 | Msa1380280:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | + | tig0020342:14561-14580 | Msa1380280:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | + | tig0020342:14621-14640 | Msa1380280:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | + | tig0020342:14622-14641 | Msa1380280:CDS | 35.0% | |
| !!! | GTTTGGAATTGGTTTTGGTT+GGG | - | tig0020342:13900-13919 | None:intergenic | 35.0% |
| !!! | TGTTTGGAATTGGTTTTGGT+TGG | - | tig0020342:13901-13920 | None:intergenic | 35.0% |
| !!! | GCTTTGTTTGGAATTGGTTT+TGG | - | tig0020342:13905-13924 | None:intergenic | 35.0% |
| !! | GAGTGTTGAGTTGAAGAATA+AGG | - | tig0020342:13927-13946 | None:intergenic | 35.0% |
| ACCACAAAGTAAATGATTCG+AGG | + | tig0020342:13995-14014 | Msa1380280:CDS | 35.0% | |
| ACCTCGAATCATTTACTTTG+TGG | - | tig0020342:13999-14018 | None:intergenic | 35.0% | |
| ACAAAGTAAATGATTCGAGG+TGG | + | tig0020342:13998-14017 | Msa1380280:CDS | 35.0% | |
| AGTAAGGTTATTTACTGGTC+CGG | - | tig0020342:14037-14056 | None:intergenic | 35.0% | |
| AGCTCAGTAAGGTTATTTAC+TGG | - | tig0020342:14042-14061 | None:intergenic | 35.0% | |
| GTATCTTATCATCATGGTCA+AGG | - | tig0020342:14074-14093 | None:intergenic | 35.0% | |
| CTTTACACAACAAGTTTGAG+AGG | + | tig0020342:14222-14241 | Msa1380280:CDS | 35.0% | |
| CAACAAGTTTGAGAGGAATA+AGG | + | tig0020342:14229-14248 | Msa1380280:CDS | 35.0% | |
| TGGAATACAGACAAGAATTG+TGG | + | tig0020342:14337-14356 | Msa1380280:CDS | 35.0% | |
| ! | CCTTTGATAAAAAGCTTTGG+AGG | - | tig0020342:14387-14406 | None:intergenic | 35.0% |
| ! | CCTCCAAAGCTTTTTATCAA+AGG | + | tig0020342:14384-14403 | Msa1380280:CDS | 35.0% |
| AGACAATCACTAGAAACAGT+TGG | - | tig0020342:14486-14505 | None:intergenic | 35.0% | |
| !! | GATTGTCTTTGTATTGGTTG+TGG | + | tig0020342:14498-14517 | Msa1380280:CDS | 35.0% |
| TGCAAAGTCTTCATCAACAA+TGG | + | tig0020342:14561-14580 | Msa1380280:CDS | 35.0% | |
| TGTCATGAGTGCAATGAAAA+TGG | + | tig0020342:14621-14640 | Msa1380280:CDS | 35.0% | |
| GTCATGAGTGCAATGAAAAT+GGG | + | tig0020342:14622-14641 | Msa1380280:CDS | 35.0% | |
| GTTATTTACTGGTCCGGATT+GGG | - | tig0020342:14031-14050 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | + | tig0020342:14180-14199 | Msa1380280:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | + | tig0020342:14399-14418 | Msa1380280:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | + | tig0020342:14436-14455 | Msa1380280:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | + | tig0020342:14456-14475 | Msa1380280:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | + | tig0020342:14506-14525 | Msa1380280:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | + | tig0020342:14507-14526 | Msa1380280:CDS | 40.0% |
| GTTATTTACTGGTCCGGATT+GGG | - | tig0020342:14031-14050 | None:intergenic | 40.0% | |
| !! | TTTGAAGAAAAGTGTCCACC+AGG | + | tig0020342:14180-14199 | Msa1380280:CDS | 40.0% |
| ! | ATCAAAGGAAGGTACATTGG+AGG | + | tig0020342:14399-14418 | Msa1380280:CDS | 40.0% |
| !! | TTGGTTTGCATGAAATGGGT+TGG | + | tig0020342:14436-14455 | Msa1380280:CDS | 40.0% |
| !! | TGGCTTGGAAAGATTTTGGA+AGG | + | tig0020342:14456-14475 | Msa1380280:CDS | 40.0% |
| !! | TTGTATTGGTTGTGGCAACA+TGG | + | tig0020342:14506-14525 | Msa1380280:CDS | 40.0% |
| !! | TGTATTGGTTGTGGCAACAT+GGG | + | tig0020342:14507-14526 | Msa1380280:CDS | 40.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | - | tig0020342:13985-14004 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | + | tig0020342:14005-14024 | Msa1380280:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | - | tig0020342:14032-14051 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | - | tig0020342:14053-14072 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | - | tig0020342:14201-14220 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | + | tig0020342:14311-14330 | Msa1380280:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | + | tig0020342:14417-14436 | Msa1380280:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | + | tig0020342:14441-14460 | Msa1380280:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | + | tig0020342:14452-14471 | Msa1380280:CDS | 45.0% |
| ACTTTGTGGTCGTCGAAGAA+CGG | - | tig0020342:13985-14004 | None:intergenic | 45.0% | |
| AAATGATTCGAGGTGGACCT+CGG | + | tig0020342:14005-14024 | Msa1380280:CDS | 45.0% | |
| GGTTATTTACTGGTCCGGAT+TGG | - | tig0020342:14032-14051 | None:intergenic | 45.0% | |
| ! | GGCTAAACTCTAGCTCAGTA+AGG | - | tig0020342:14053-14072 | None:intergenic | 45.0% |
| ATGATCGAATTGCTTCCACC+TGG | - | tig0020342:14201-14220 | None:intergenic | 45.0% | |
| TCATGAAAGAGACGTGTCTC+TGG | + | tig0020342:14311-14330 | Msa1380280:CDS | 45.0% | |
| ! | GGAGGAGCTGATGAAGTATT+TGG | + | tig0020342:14417-14436 | Msa1380280:CDS | 45.0% |
| !! | TTGCATGAAATGGGTTGGCT+TGG | + | tig0020342:14441-14460 | Msa1380280:CDS | 45.0% |
| !!! | GGGTTGGCTTGGAAAGATTT+TGG | + | tig0020342:14452-14471 | Msa1380280:CDS | 45.0% |
| CGTCGAAGAACGGTGAAGTA+GGG | - | tig0020342:13975-13994 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | - | tig0020342:13976-13995 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | + | tig0020342:14183-14202 | Msa1380280:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | - | tig0020342:14198-14217 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | + | tig0020342:14317-14336 | Msa1380280:CDS | 50.0% | |
| CGTCGAAGAACGGTGAAGTA+GGG | - | tig0020342:13975-13994 | None:intergenic | 50.0% | |
| TCGTCGAAGAACGGTGAAGT+AGG | - | tig0020342:13976-13995 | None:intergenic | 50.0% | |
| !! | GAAGAAAAGTGTCCACCAGG+TGG | + | tig0020342:14183-14202 | Msa1380280:CDS | 50.0% |
| ATCGAATTGCTTCCACCTGG+TGG | - | tig0020342:14198-14217 | None:intergenic | 50.0% | |
| AAGAGACGTGTCTCTGGACT+TGG | + | tig0020342:14317-14336 | Msa1380280:CDS | 50.0% | |
| AGGTGGACCTCGGCCCAATC+CGG | + | tig0020342:14015-14034 | Msa1380280:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | - | tig0020342:14025-14044 | None:intergenic | 65.0% |
| AGGTGGACCTCGGCCCAATC+CGG | + | tig0020342:14015-14034 | Msa1380280:CDS | 65.0% | |
| ! | TACTGGTCCGGATTGGGCCG+AGG | - | tig0020342:14025-14044 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020342 | gene | 13853 | 14671 | 13853 | ID=Msa1380280;Name=Msa1380280 |
| tig0020342 | mRNA | 13853 | 14671 | 13853 | ID=Msa1380280-mRNA-1;Parent=Msa1380280;Name=Msa1380280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|272 |
| tig0020342 | exon | 13853 | 14671 | 13853 | ID=Msa1380280-mRNA-1:exon:7067;Parent=Msa1380280-mRNA-1 |
| tig0020342 | CDS | 13853 | 14671 | 13853 | ID=Msa1380280-mRNA-1:cds;Parent=Msa1380280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
