AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1172220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172220 MtrunA17_Chr4g0076631 99.402 502 2 1 1 501 1 502 0.0 1024
Msa1172220 MtrunA17_Chr2g0291031 68.263 501 119 5 1 501 1 461 0.0 638
Msa1172220 MtrunA17_Chr4g0065941 68.792 298 90 1 2 299 1 295 3.50e-154 442
Msa1172220 MtrunA17_Chr2g0287221 62.179 312 115 1 2 313 1 309 6.23e-146 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1172220 AT4G17150.1 64.522 513 148 5 1 500 10 501 0.0 626
Msa1172220 AT4G17150.4 71.182 406 106 4 1 398 10 412 0.0 558
Msa1172220 AT4G17150.5 63.002 473 141 5 41 500 26 477 0.0 555
Msa1172220 AT4G17150.3 76.796 362 82 1 1 360 10 371 0.0 549
Msa1172220 AT4G17150.2 76.796 362 82 1 1 360 10 371 0.0 549
Msa1172220 AT4G14290.2 71.429 287 82 0 2 288 1 287 5.96e-158 459
Msa1172220 AT4G14290.1 71.429 287 82 0 2 288 1 287 8.94e-158 460
Msa1172220 AT3G23540.1 67.657 303 95 1 2 301 1 303 1.30e-155 455
Msa1172220 AT3G23540.3 69.091 275 82 1 30 301 2 276 1.66e-141 418
Msa1172220 AT4G14290.5 72.532 233 64 0 56 288 1 233 2.23e-127 380
Msa1172220 AT3G23540.2 67.500 160 49 1 145 301 1 160 3.40e-73 238
Msa1172220 AT4G14290.3 70.714 140 41 0 149 288 33 172 1.14e-67 224
Msa1172220 AT4G14290.4 70.803 137 40 0 152 288 1 137 3.82e-67 222

Find 152 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGGTGTTTGGTGTTCT+TGG 0.142159 8_1:+2073417 Msa1172220:five_prime_UTR
GTGGGATTTAGCCTTCTTTA+TGG 0.167652 8_1:+2076328 Msa1172220:intron
CTCGAGAAATATTATGATTT+AGG 0.172301 8_1:+2078027 Msa1172220:CDS
AAATATCCCGTATAGGTTTA+TGG 0.173583 8_1:+2075705 Msa1172220:CDS
TTTAGGAATTGCCAAATATT+TGG 0.181328 8_1:+2081759 Msa1172220:three_prime_UTR
TTCTCCCAATTAGGTTAAAA+TGG 0.185844 8_1:+2077412 Msa1172220:intron
ATACTTCTTCTCAGCTTATT+TGG 0.201453 8_1:+2073527 Msa1172220:five_prime_UTR
TTGCTAACAAGCCAAATATT+TGG 0.214997 8_1:-2081770 None:intergenic
CTTGCGGCTTTGTCTTCTTA+AGG 0.270780 8_1:+2081504 Msa1172220:CDS
AATACTACCAATTTGACTTT+TGG 0.273768 8_1:+2073922 Msa1172220:five_prime_UTR
GCCAATCAGAAACCAATATT+TGG 0.276128 8_1:-2081689 None:intergenic
TTCTCAAATCTGTCACTCTT+TGG 0.286897 8_1:-2081460 None:intergenic
TGCACACTTGCGGCTTCATC+AGG 0.294214 8_1:-2079049 None:intergenic
TCGAGAAATATTATGATTTA+GGG 0.306533 8_1:+2078028 Msa1172220:CDS
GAGGACATTGTAGAAGAAAA+TGG 0.307349 8_1:-2077974 None:intergenic
AGTTGTGAAGAAAGAGAGAT+TGG 0.308468 8_1:+2073945 Msa1172220:five_prime_UTR
CACAACTCCAAAAGTCAAAT+TGG 0.322947 8_1:-2073929 None:intergenic
TGGGGCAGGTGTTCTTCATT+AGG 0.330333 8_1:+2080151 Msa1172220:CDS
TTCTATTGCTGGAATGGTAT+TGG 0.336375 8_1:+2076363 Msa1172220:CDS
TTGCGGCTTTGTCTTCTTAA+GGG 0.349769 8_1:+2081505 Msa1172220:CDS
ACCCTTGACTTCTCGGGGTC+AGG 0.351572 8_1:+2075302 Msa1172220:CDS
GCCAAATATTGGTTTCTGAT+TGG 0.356584 8_1:+2081688 Msa1172220:three_prime_UTR
GAGAATTACAGCCGCTTCAT+TGG 0.360136 8_1:-2075255 None:intergenic
AATATCCCGTATAGGTTTAT+GGG 0.365038 8_1:+2075706 Msa1172220:CDS
AATACCATTCCAGCAATAGA+AGG 0.376973 8_1:-2076361 None:intergenic
GCCGAAGACCCTTCTATTGC+TGG 0.379355 8_1:+2076352 Msa1172220:CDS
AAGCTCAAATAGAGAAAGTT+GGG 0.381819 8_1:+2080132 Msa1172220:CDS
TTATATATTGCCATGGAAAC+AGG 0.382845 8_1:+2075080 Msa1172220:CDS
ATTACAATTAGATTGACTAT+TGG 0.394016 8_1:-2081587 None:intergenic
AAATAAGCTGAGAAGAAGTA+TGG 0.398646 8_1:-2073525 None:intergenic
TATGAAATTGAACTGTGTTC+TGG 0.398736 8_1:+2077484 Msa1172220:CDS
CTACCAAAGGCAGGATTTAG+AGG 0.404625 8_1:+2074853 Msa1172220:CDS
GAAAAGGAATTCTCTCTTGC+TGG 0.411836 8_1:+2074824 Msa1172220:CDS
CGAAATGAAATGAAATGAAA+AGG 0.413453 8_1:-2073584 None:intergenic
GATTTAGGGGATTTGAAACT+TGG 0.415584 8_1:+2078042 Msa1172220:CDS
TGGTGTTCTTGGAATTGAAT+TGG 0.420124 8_1:+2073428 Msa1172220:five_prime_UTR
ACAGATGACAATGATGGAAT+TGG 0.425584 8_1:+2079025 Msa1172220:CDS
GGTCAATGGGCGCAGTTACT+AGG 0.428894 8_1:+2075732 Msa1172220:CDS
TTGCCTCTAAATCCTGCCTT+TGG 0.430450 8_1:-2074856 None:intergenic
TTGTGGACGTTTATAAAATC+CGG 0.430844 8_1:+2076425 Msa1172220:CDS
GTATCTTCAGGAAAAGGAAA+AGG 0.432727 8_1:-2075043 None:intergenic
GGGGATTTGAAACTTGGTTC+CGG 0.432780 8_1:+2078048 Msa1172220:CDS
CTTGCATGTCCAAATAAAAC+AGG 0.434305 8_1:-2077720 None:intergenic
CTCAGCTTATTTGGTGGTGG+TGG 0.435731 8_1:+2073536 Msa1172220:five_prime_UTR
GGACAGCTGGCTGAGGTGTT+TGG 0.436350 8_1:+2073408 Msa1172220:five_prime_UTR
CTTCTCAGCTTATTTGGTGG+TGG 0.438281 8_1:+2073533 Msa1172220:five_prime_UTR
GAGTGACAGATTTGAGAAGC+TGG 0.441559 8_1:+2081465 Msa1172220:CDS
AGAGAGAGTACCGTGAACTT+TGG 0.446970 8_1:-2076451 None:intergenic
AGATGACTTGTTTCTTCGAT+GGG 0.453630 8_1:-2081533 None:intergenic
AGAGAAGTATCTTCAGGAAA+AGG 0.459180 8_1:-2075049 None:intergenic
CTTCTTCTCAGCTTATTTGG+TGG 0.459744 8_1:+2073530 Msa1172220:five_prime_UTR
ATGAGCAACAATCTTCAATC+TGG 0.460440 8_1:-2080105 None:intergenic
GGCACCCTACTACATCAGTC+AGG 0.465060 8_1:-2078909 None:intergenic
AAGATGACTTGTTTCTTCGA+TGG 0.466764 8_1:-2081534 None:intergenic
CAAGGAAGAGAAGTATCTTC+AGG 0.469007 8_1:-2075055 None:intergenic
CAAGCTCAAATAGAGAAAGT+TGG 0.469326 8_1:+2080131 Msa1172220:CDS
GAGATAATGACTACACTTCA+AGG 0.474252 8_1:-2075020 None:intergenic
TTTCCCACAGATACTGATCC+GGG 0.477800 8_1:-2074805 None:intergenic
AAAACAGGAATGAATGTCTT+CGG 0.479091 8_1:-2077705 None:intergenic
TCCAGCAATAGAAGGGTCTT+CGG 0.485556 8_1:-2076353 None:intergenic
GAGATTATATAAGTTTGAAA+AGG 0.488604 8_1:-2076392 None:intergenic
AAAAGAATAAATTGATAAGA+GGG 0.488945 8_1:+2073378 Msa1172220:five_prime_UTR
ATTGTGGCCGGGAGGAATTA+TGG 0.491620 8_1:-2077933 None:intergenic
TGATGAAGCCGCAAGTGTGC+AGG 0.493167 8_1:+2079051 Msa1172220:CDS
GAGAAGAAGTATGGTTAGAG+AGG 0.493381 8_1:-2073516 None:intergenic
AAAACACAAATTTCGTGTGT+AGG 0.494347 8_1:+2081616 Msa1172220:three_prime_UTR
AACAAACAAATATCCCGTAT+AGG 0.496030 8_1:+2075698 Msa1172220:CDS
GAAATGAAATGAAATGAAAA+GGG 0.497133 8_1:-2073583 None:intergenic
TAATGATAACAGCGAAATGA+AGG 0.502100 8_1:-2081711 None:intergenic
CTCTAAATCCTGCCTTTGGT+AGG 0.502347 8_1:-2074852 None:intergenic
TGCTGATGATAAGCTCTCTC+AGG 0.502510 8_1:+2080207 Msa1172220:CDS
AATTGATAAGAGGGAAAGAA+AGG 0.506532 8_1:+2073387 Msa1172220:five_prime_UTR
TGGTAGCTTAGCTCAGACTT+TGG 0.510902 8_1:+2073556 Msa1172220:five_prime_UTR
TTAAATGATGCAGTGGATGT+AGG 0.518787 8_1:+2075225 Msa1172220:intron
AGATGAAAAGAAGCCGAAGA+AGG 0.519297 8_1:+2081396 Msa1172220:CDS
AGACCCTTCTATTGCTGGAA+TGG 0.522988 8_1:+2076357 Msa1172220:CDS
GAAACTACAGATGACAATGA+TGG 0.526697 8_1:+2079019 Msa1172220:CDS
GGATCAGTATCTGTGGGAAA+AGG 0.529501 8_1:+2074808 Msa1172220:CDS
ATTTCGTTATTCGCCCTCCC+AGG 0.531333 8_1:+2074089 Msa1172220:CDS
ATCATAAAAGAATTGTGGCC+GGG 0.532049 8_1:-2077944 None:intergenic
AGATTGTGGTGTCGCATTTG+AGG 0.532944 8_1:+2075672 Msa1172220:CDS
AAGAATAATAATACCTGGGA+GGG 0.533025 8_1:-2074102 None:intergenic
TCGGGGTCAGGCTTATCTGA+TGG 0.533663 8_1:+2075314 Msa1172220:CDS
GCGGCGGGTTATTGAGAAGA+AGG 0.534978 8_1:+2077448 Msa1172220:CDS
TATCTTCAGGAAAAGGAAAA+GGG 0.536605 8_1:-2075042 None:intergenic
GGCAGGTGTTCTTCATTAGG+AGG 0.539678 8_1:+2080154 Msa1172220:CDS
CCTTGTGTTATATATTGCCA+TGG 0.540136 8_1:+2075073 Msa1172220:CDS
GATGAAAAGAAGCCGAAGAA+GGG 0.543208 8_1:+2081397 Msa1172220:CDS
GTATCTATCTTATAGCCACT+TGG 0.543355 8_1:-2074044 None:intergenic
TGTAGTTTCATCTTCAAGCA+AGG 0.545400 8_1:-2079005 None:intergenic
GTACCGTGAACTTTGGAAGC+CGG 0.545459 8_1:-2076444 None:intergenic
AGCCTGACCCCGAGAAGTCA+AGG 0.546559 8_1:-2075304 None:intergenic
AAACTTATATAATCTCATGA+TGG 0.546998 8_1:+2076399 Msa1172220:CDS
TAATCTCATGATGGAGCTTG+TGG 0.547533 8_1:+2076408 Msa1172220:CDS
ACTTGGTTCCGGTGTGGATG+AGG 0.547607 8_1:+2078059 Msa1172220:CDS
TTCTCTTTCATACTTCGCAA+AGG 0.549432 8_1:-2081355 None:intergenic
AATCATAAAAGAATTGTGGC+CGG 0.549501 8_1:-2077945 None:intergenic
GTAACACATACCTGTTTCCA+TGG 0.551077 8_1:-2075090 None:intergenic
GTATTAAATTAATACCGCAT+AGG 0.557960 8_1:-2077790 None:intergenic
AGGCTCTCAGCAGACGCTTG+CGG 0.561762 8_1:+2081488 Msa1172220:CDS
GGCTGTACAATACATGCGGC+GGG 0.564086 8_1:+2077433 Msa1172220:CDS
AGAGGGAAAGAAAGGACAGC+TGG 0.565313 8_1:+2073395 Msa1172220:five_prime_UTR
TATGATATGATATACAAAAG+AGG 0.565995 8_1:-2081559 None:intergenic
ATATCCCGTATAGGTTTATG+GGG 0.567406 8_1:+2075707 Msa1172220:CDS
TAAATGATGCAGTGGATGTA+GGG 0.568274 8_1:+2075226 Msa1172220:intron
CAAATAGAGAAAGTTGGGGC+AGG 0.573325 8_1:+2080137 Msa1172220:CDS
ACTGAATCATAAAAGAATTG+TGG 0.574633 8_1:-2077949 None:intergenic
ATGGCGACCATAATTCCTCC+CGG 0.574950 8_1:+2077926 Msa1172220:CDS
ACACTTCAAGGTATAGCCTC+TGG 0.577166 8_1:-2075008 None:intergenic
GTAGTTTCATCTTCAAGCAA+GGG 0.578611 8_1:-2079004 None:intergenic
GGTCTTCGGCTCCATAAAGA+AGG 0.579635 8_1:-2076339 None:intergenic
AAAGAAAGGACAGCTGGCTG+AGG 0.581463 8_1:+2073401 Msa1172220:five_prime_UTR
GATGGAGACTATGTCAGCCT+TGG 0.581558 8_1:+2075332 Msa1172220:CDS
GCACCCTACTACATCAGTCA+GGG 0.585755 8_1:-2078908 None:intergenic
ATGAAATGAAATGAAAAGGG+TGG 0.589383 8_1:-2073580 None:intergenic
GAAAGATGATCTGAAGATTG+TGG 0.598855 8_1:+2075658 Msa1172220:intron
AATCCGGCTTCCAAAGTTCA+CGG 0.601063 8_1:+2076441 Msa1172220:CDS
TGGTAGAACCTACCAAAGGC+AGG 0.601644 8_1:+2074844 Msa1172220:CDS
TGAAATGAAATGAAAAGGGT+GGG 0.607773 8_1:-2073579 None:intergenic
GAGACTATGTCAGCCTTGGT+TGG 0.607802 8_1:+2075336 Msa1172220:CDS
AAAGATAACCTGCACACTTG+CGG 0.608984 8_1:-2079059 None:intergenic
CGAGAAATATTATGATTTAG+GGG 0.610738 8_1:+2078029 Msa1172220:CDS
AACTTACTTCGTGCCAACCA+AGG 0.612981 8_1:-2075349 None:intergenic
GCACACTTGCGGCTTCATCA+GGG 0.613086 8_1:-2079048 None:intergenic
TTTGAAACTTGGTTCCGGTG+TGG 0.615743 8_1:+2078053 Msa1172220:CDS
ATACCATTCCAGCAATAGAA+GGG 0.616504 8_1:-2076360 None:intergenic
CCATGGCAATATATAACACA+AGG 0.617756 8_1:-2075073 None:intergenic
CAATAGAGACTTGAGGAGGA+CGG 0.628343 8_1:-2077996 None:intergenic
ATTCATTTCATGACGCCAAG+TGG 0.629844 8_1:+2074029 Msa1172220:five_prime_UTR
CTTAGCTTACAATTAGAGTG+AGG 0.631339 8_1:-2074003 None:intergenic
GTTAAATACCTCATCCACAC+CGG 0.635215 8_1:-2078067 None:intergenic
TGGCTGTACAATACATGCGG+CGG 0.639633 8_1:+2077432 Msa1172220:CDS
TCAGCAATAGAGACTTGAGG+AGG 0.640185 8_1:-2078000 None:intergenic
GCCTGACCCCGAGAAGTCAA+GGG 0.640197 8_1:-2075303 None:intergenic
TAGGGCAGATGCCAATGAAG+CGG 0.642371 8_1:+2075244 Msa1172220:CDS
ATAACCCGGATCAGTATCTG+TGG 0.647394 8_1:+2074801 Msa1172220:CDS
ACACAGGGCGGACTATAACC+CGG 0.648856 8_1:+2074787 Msa1172220:intron
GTCATGTCAGAATACTGTGA+AGG 0.652766 8_1:+2081321 Msa1172220:intron
ACGAGATTCTCTCTAGTCTG+CGG 0.652977 8_1:+2078794 Msa1172220:CDS
AAAGAATAATAATACCTGGG+AGG 0.656822 8_1:-2074103 None:intergenic
TGACAGATTTGAGAAGCTGG+AGG 0.661868 8_1:+2081468 Msa1172220:CDS
TAACCCGGATCAGTATCTGT+GGG 0.666671 8_1:+2074802 Msa1172220:CDS
AGCTCAAATAGAGAAAGTTG+GGG 0.674107 8_1:+2080133 Msa1172220:CDS
AAATGGCTGTACAATACATG+CGG 0.675349 8_1:+2077429 Msa1172220:CDS
TTGCTGGTAGAACCTACCAA+AGG 0.679162 8_1:+2074840 Msa1172220:CDS
CACCCTACTACATCAGTCAG+GGG 0.681270 8_1:-2078907 None:intergenic
GTGCAGCTCAAGAATGCCAG+AGG 0.686724 8_1:+2074992 Msa1172220:intron
ATAAAAGAATTGTGGCCGGG+AGG 0.694195 8_1:-2077941 None:intergenic
TAGAGACTTGAGGAGGACGG+AGG 0.699920 8_1:-2077993 None:intergenic
TATCCCGTATAGGTTTATGG+GGG 0.742479 8_1:+2075708 Msa1172220:CDS
GAGATGAGATCAGAGTGATG+CGG 0.757183 8_1:-2077762 None:intergenic
TCTCATCTCAGAATCCTATG+CGG 0.772408 8_1:+2077776 Msa1172220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTAAGATTTTATTT+TGG + chr8_1:2076774-2076793 Msa1172220:intron 10.0%
!! AAAAATATCATTAAATTTGA+TGG + chr8_1:2077907-2077926 Msa1172220:CDS 10.0%
!! AAAGTAACAATAATAATTTA+TGG - chr8_1:2078658-2078677 None:intergenic 10.0%
!! AATTATATTGTAATTATGTT+AGG - chr8_1:2080545-2080564 None:intergenic 10.0%
!! AAAAAAGGAAAAAAAAAAAA+AGG + chr8_1:2080694-2080713 Msa1172220:intron 10.0%
!! AAAAAGAATAAATTGATAAG+AGG + chr8_1:2073377-2073396 Msa1172220:five_prime_UTR 15.0%
!! AAAAGAATAAATTGATAAGA+GGG + chr8_1:2073378-2073397 Msa1172220:five_prime_UTR 15.0%
!! AAAAAAGAATAATAATACCT+GGG - chr8_1:2074109-2074128 None:intergenic 15.0%
!! TAAAAAAGAATAATAATACC+TGG - chr8_1:2074110-2074129 None:intergenic 15.0%
!!! TCTTTTTTATTCATCAAATT+TGG + chr8_1:2074121-2074140 Msa1172220:intron 15.0%
!!! AAAACTTTTTGAAATAGTAT+GGG - chr8_1:2074542-2074561 None:intergenic 15.0%
!! AAGTTAGATAGAAATATATA+TGG + chr8_1:2075800-2075819 Msa1172220:intron 15.0%
!! AAATTGTTAAAACAAAAGTT+GGG + chr8_1:2076839-2076858 Msa1172220:intron 15.0%
!!! CAAAGAACATAATTTTTTTT+GGG - chr8_1:2078146-2078165 None:intergenic 15.0%
!!! ACAAAGAACATAATTTTTTT+TGG - chr8_1:2078147-2078166 None:intergenic 15.0%
!! TAAAATTGAAGATATTAACT+TGG + chr8_1:2078402-2078421 Msa1172220:intron 15.0%
!! AAAATGGAAAAACAAAAAAA+AGG + chr8_1:2078469-2078488 Msa1172220:intron 15.0%
!! AACATTATCATGATTATATA+TGG + chr8_1:2078596-2078615 Msa1172220:intron 15.0%
!!! TTATTATTGTTACTTTTTTG+TGG + chr8_1:2078662-2078681 Msa1172220:intron 15.0%
!!! TTTTATATTAGTATGGTTTT+AGG + chr8_1:2078690-2078709 Msa1172220:intron 15.0%
!!! AACTAAATAGAAAGTTTTTT+TGG - chr8_1:2078960-2078979 None:intergenic 15.0%
!! TAAAATATAATTCACGAAAT+CGG - chr8_1:2079433-2079452 None:intergenic 15.0%
!! ATGCTAAAATTATAAAAATG+TGG - chr8_1:2080034-2080053 None:intergenic 15.0%
!!! TTTTTTTCCTTTTTTAGTTT+TGG - chr8_1:2080689-2080708 None:intergenic 15.0%
!! GAAATGAAATGAAATGAAAA+GGG - chr8_1:2073586-2073605 None:intergenic 20.0%
!!! CTTTTCATTTCATTTCATTT+CGG + chr8_1:2073585-2073604 Msa1172220:five_prime_UTR 20.0%
!!! ACTACTACTTTTTCATTTTT+CGG + chr8_1:2073837-2073856 Msa1172220:intron 20.0%
!!! ATTTTAATAAGCTATATTGG+AGG - chr8_1:2074263-2074282 None:intergenic 20.0%
!!! GGTATTTTAATAAGCTATAT+TGG - chr8_1:2074266-2074285 None:intergenic 20.0%
!!! AAACATCATATTAACTTGTT+TGG - chr8_1:2074405-2074424 None:intergenic 20.0%
!!! ATGTTTATCTTCTTTTGATT+TGG + chr8_1:2074471-2074490 Msa1172220:intron 20.0%
!!! AAACTTTTTGAAATAGTATG+GGG - chr8_1:2074541-2074560 None:intergenic 20.0%
!!! CAAAACTTTTTGAAATAGTA+TGG - chr8_1:2074543-2074562 None:intergenic 20.0%
!!! CATACTATTTCAAAAAGTTT+TGG + chr8_1:2074541-2074560 Msa1172220:intron 20.0%
!!! AGTATCGAGTATTTATTTTA+TGG + chr8_1:2074878-2074897 Msa1172220:intron 20.0%
!!! GTATCGAGTATTTATTTTAT+GGG + chr8_1:2074879-2074898 Msa1172220:intron 20.0%
!! GTAAAAACAGTAATATTTGA+TGG - chr8_1:2075284-2075303 None:intergenic 20.0%
!!! ATTAAGAATTTATGCTGTTT+TGG + chr8_1:2075908-2075927 Msa1172220:intron 20.0%
!!! AATATTTTTGTTTCAAACAC+AGG - chr8_1:2076097-2076116 None:intergenic 20.0%
!! GAGATTATATAAGTTTGAAA+AGG - chr8_1:2076395-2076414 None:intergenic 20.0%
!! AAACTTATATAATCTCATGA+TGG + chr8_1:2076399-2076418 Msa1172220:CDS 20.0%
!!! TTCAAGTCTTTTACAATAAA+GGG - chr8_1:2076532-2076551 None:intergenic 20.0%
!!! TTTCAAGTCTTTTACAATAA+AGG - chr8_1:2076533-2076552 None:intergenic 20.0%
!!! TAATTTCCTTTTTGTTAAGA+TGG + chr8_1:2076707-2076726 Msa1172220:intron 20.0%
!!! TAAGATTTTATTTTGGATCT+AGG + chr8_1:2076781-2076800 Msa1172220:intron 20.0%
!!! AAGATTTTATTTTGGATCTA+GGG + chr8_1:2076782-2076801 Msa1172220:intron 20.0%
!!! AATTATAGCTCTTTTTTACT+AGG + chr8_1:2076816-2076835 Msa1172220:intron 20.0%
!! GAAATTGTTAAAACAAAAGT+TGG + chr8_1:2076838-2076857 Msa1172220:intron 20.0%
!! AATTGTTAAAACAAAAGTTG+GGG + chr8_1:2076840-2076859 Msa1172220:intron 20.0%
!! ATTATTAATCATGACAAGTT+TGG + chr8_1:2076864-2076883 Msa1172220:intron 20.0%
!!! GAATATACTTTTATTTTGCA+TGG + chr8_1:2076901-2076920 Msa1172220:intron 20.0%
!! AACTAGTATCATGTATAATT+AGG + chr8_1:2076998-2077017 Msa1172220:intron 20.0%
!! AAAAAAATCTTTATGCATTG+TGG - chr8_1:2077046-2077065 None:intergenic 20.0%
!! TATATAGTTGTATACCAATT+TGG - chr8_1:2077145-2077164 None:intergenic 20.0%
!!! TGATTTTATAACTTTTATGC+TGG + chr8_1:2077289-2077308 Msa1172220:intron 20.0%
!!! GCATTAATTTAAGATAGAAA+TGG - chr8_1:2077664-2077683 None:intergenic 20.0%
!!! TAAACAGAAGTTAGATATTT+TGG - chr8_1:2077870-2077889 None:intergenic 20.0%
!! TCGAGAAATATTATGATTTA+GGG + chr8_1:2078028-2078047 Msa1172220:CDS 20.0%
!! ACATTTAACTAAATTCTTTG+AGG - chr8_1:2078311-2078330 None:intergenic 20.0%
!! TTATCCATTACTTATAATGT+AGG + chr8_1:2078979-2078998 Msa1172220:intron 20.0%
!! TACATGTAAAATAAAATTCC+TGG - chr8_1:2079115-2079134 None:intergenic 20.0%
!!! AGGAATTTTATTTTACATGT+AGG + chr8_1:2079114-2079133 Msa1172220:intron 20.0%
!! AGTAAATAAAATACTAGCAA+AGG - chr8_1:2079407-2079426 None:intergenic 20.0%
!! TTAAGAAAAGTTAATCTCAA+AGG - chr8_1:2079590-2079609 None:intergenic 20.0%
!! GAGTAGTTTATTATAAGAAA+AGG + chr8_1:2079835-2079854 Msa1172220:intron 20.0%
!!! AAAGTATTTTTTCTCAAATG+CGG - chr8_1:2081159-2081178 None:intergenic 20.0%
!! TATGATATGATATACAAAAG+AGG - chr8_1:2081562-2081581 None:intergenic 20.0%
!! ATTACAATTAGATTGACTAT+TGG - chr8_1:2081590-2081609 None:intergenic 20.0%
! CGAAATGAAATGAAATGAAA+AGG - chr8_1:2073587-2073606 None:intergenic 25.0%
!! TTTTCGACTTTAATCTTTCT+TGG - chr8_1:2073679-2073698 None:intergenic 25.0%
! ACAAGCAAGTTTATGAAATA+TGG - chr8_1:2073759-2073778 None:intergenic 25.0%
!!! TCAATGTCATACTACTTTTA+AGG + chr8_1:2073794-2073813 Msa1172220:intron 25.0%
!!! CAATGTCATACTACTTTTAA+GGG + chr8_1:2073795-2073814 Msa1172220:intron 25.0%
!!! CTACTACTTTTTCATTTTTC+GGG + chr8_1:2073838-2073857 Msa1172220:intron 25.0%
!!! AATACTACCAATTTGACTTT+TGG + chr8_1:2073922-2073941 Msa1172220:five_prime_UTR 25.0%
! TAAGATAAGCTACTCAAATA+AGG - chr8_1:2074151-2074170 None:intergenic 25.0%
! AAACAATCTCACAAAACTTA+TGG - chr8_1:2074176-2074195 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + chr8_1:2074175-2074194 Msa1172220:intron 25.0%
!!! CATAAGCTATTTTATAGCAA+AGG - chr8_1:2074327-2074346 None:intergenic 25.0%
! ATAATGAGAACTATCTAACA+TGG - chr8_1:2074605-2074624 None:intergenic 25.0%
! CAATTATTGTTGCCTATATA+TGG + chr8_1:2074908-2074927 Msa1172220:intron 25.0%
! AAATAAACACATTCACAAAG+AGG - chr8_1:2075376-2075395 None:intergenic 25.0%
! TATGTCATATTATCCTTAGT+TGG + chr8_1:2075467-2075486 Msa1172220:intron 25.0%
! CAAAAAACACATTCATAAAG+AGG - chr8_1:2075507-2075526 None:intergenic 25.0%
! TAAATCGGAAAAACATAAAG+CGG + chr8_1:2076131-2076150 Msa1172220:intron 25.0%
! ATGTATACAGAGAAAATGTA+AGG - chr8_1:2076254-2076273 None:intergenic 25.0%
! TACTTTCCATCTTAACAAAA+AGG - chr8_1:2076716-2076735 None:intergenic 25.0%
! AAGATGGAAAGTAAAGAAAA+AGG + chr8_1:2076723-2076742 Msa1172220:intron 25.0%
! AAGTATATTCTTCAATCCTA+GGG - chr8_1:2076752-2076771 None:intergenic 25.0%
! TAAGTATATTCTTCAATCCT+AGG - chr8_1:2076753-2076772 None:intergenic 25.0%
! AAAAGAGCTATAATTATGAG+AGG - chr8_1:2076811-2076830 None:intergenic 25.0%
!!! ATTTTGCATGGTTGTTTTTA+AGG + chr8_1:2076913-2076932 Msa1172220:intron 25.0%
!!! TTTTGCATGGTTGTTTTTAA+GGG + chr8_1:2076914-2076933 Msa1172220:intron 25.0%
!!! TGAACTATTTTTTAAGCTGT+AGG + chr8_1:2077079-2077098 Msa1172220:intron 25.0%
! AGCTGAAAATCAAAATATGT+GGG - chr8_1:2077115-2077134 None:intergenic 25.0%
! GTATACAACTATATATGCAT+TGG + chr8_1:2077150-2077169 Msa1172220:intron 25.0%
!!! TATGCATTGGATTTACTTTT+AGG + chr8_1:2077163-2077182 Msa1172220:intron 25.0%
! TCATTCAATCAAACAATACA+CGG - chr8_1:2077227-2077246 None:intergenic 25.0%
! AAACAAAATATGATCGATGA+AGG - chr8_1:2077567-2077586 None:intergenic 25.0%
!!! ACATTCATTCCTGTTTTATT+TGG + chr8_1:2077711-2077730 Msa1172220:CDS 25.0%
! GTATTAAATTAATACCGCAT+AGG - chr8_1:2077793-2077812 None:intergenic 25.0%
!!! GTTAGATATTTTGGCTATTA+AGG - chr8_1:2077861-2077880 None:intergenic 25.0%
! ACTTCTGTTTATGAATTTGT+AGG + chr8_1:2077879-2077898 Msa1172220:intron 25.0%
! CTTCTGTTTATGAATTTGTA+GGG + chr8_1:2077880-2077899 Msa1172220:intron 25.0%
! ACTGAATCATAAAAGAATTG+TGG - chr8_1:2077952-2077971 None:intergenic 25.0%
! CTCGAGAAATATTATGATTT+AGG + chr8_1:2078027-2078046 Msa1172220:CDS 25.0%
! CGAGAAATATTATGATTTAG+GGG + chr8_1:2078029-2078048 Msa1172220:CDS 25.0%
! TTATTTGTGAACTAACGAAA+TGG + chr8_1:2078336-2078355 Msa1172220:intron 25.0%
! AATGTTTCCAAAAACTGAAA+TGG - chr8_1:2078582-2078601 None:intergenic 25.0%
!!! GGCATTGTTTTATATTAGTA+TGG + chr8_1:2078683-2078702 Msa1172220:intron 25.0%
! AAAAAATAGACAGAAGGTTA+AGG - chr8_1:2078933-2078952 None:intergenic 25.0%
! TTGTCTGTGAAATTAAGAAA+TGG + chr8_1:2079088-2079107 Msa1172220:intron 25.0%
!! AAACTGCAAATGCAATTTTA+AGG + chr8_1:2079472-2079491 Msa1172220:intron 25.0%
!!! TGCAATTTTAAGGTTACTTT+CGG + chr8_1:2079482-2079501 Msa1172220:intron 25.0%
! AAAACTAAGTCTTGATTGAA+TGG + chr8_1:2079773-2079792 Msa1172220:intron 25.0%
! AAACTAAGTCTTGATTGAAT+GGG + chr8_1:2079774-2079793 Msa1172220:intron 25.0%
!! TTTCATTAGTAGACTTTTTG+TGG + chr8_1:2079804-2079823 Msa1172220:intron 25.0%
!!! TTTTAAGTGTTGTTTTACTC+TGG + chr8_1:2079900-2079919 Msa1172220:intron 25.0%
!! TTGACCATTAATGACTTTTA+GGG + chr8_1:2080070-2080089 Msa1172220:intron 25.0%
! TATGTGTGTAAAAAGTGAAA+CGG - chr8_1:2080302-2080321 None:intergenic 25.0%
! AATGATTACCATTATCCTAT+TGG + chr8_1:2080328-2080347 Msa1172220:intron 25.0%
! TAGTATTACTACTAACCAAT+AGG - chr8_1:2080346-2080365 None:intergenic 25.0%
! CCTTGCTTATATATATTTCA+TGG - chr8_1:2080650-2080669 None:intergenic 25.0%
! CCATGAAATATATATAAGCA+AGG + chr8_1:2080647-2080666 Msa1172220:intron 25.0%
!!! TTTAGTTTTGGACCTAAATT+TGG - chr8_1:2080677-2080696 None:intergenic 25.0%
! TTTAGGTCCAAAACTAAAAA+AGG + chr8_1:2080679-2080698 Msa1172220:intron 25.0%
! AAAAAAAAAAAAGGACACCA+AGG + chr8_1:2080703-2080722 Msa1172220:intron 25.0%
! AAAAAAAAAAAGGACACCAA+GGG + chr8_1:2080704-2080723 Msa1172220:intron 25.0%
! AAAAGTGAGAATTTGAGAAA+TGG - chr8_1:2080869-2080888 None:intergenic 25.0%
! AGAATAGAAGATGTAGAAAT+TGG + chr8_1:2081008-2081027 Msa1172220:intron 25.0%
! GAATAGAAGATGTAGAAATT+GGG + chr8_1:2081009-2081028 Msa1172220:intron 25.0%
! AATAGAAGATGTAGAAATTG+GGG + chr8_1:2081010-2081029 Msa1172220:intron 25.0%
!!! TTTTAGGAATTGCCAAATAT+TGG + chr8_1:2081677-2081696 Msa1172220:three_prime_UTR 25.0%
! TTTAGGAATTGCCAAATATT+TGG + chr8_1:2081678-2081697 Msa1172220:three_prime_UTR 25.0%
AATTGATAAGAGGGAAAGAA+AGG + chr8_1:2073387-2073406 Msa1172220:five_prime_UTR 30.0%
AAATAAGCTGAGAAGAAGTA+TGG - chr8_1:2073528-2073547 None:intergenic 30.0%
ATACTTCTTCTCAGCTTATT+TGG + chr8_1:2073527-2073546 Msa1172220:five_prime_UTR 30.0%
TGAAATGAAATGAAAAGGGT+GGG - chr8_1:2073582-2073601 None:intergenic 30.0%
ATGAAATGAAATGAAAAGGG+TGG - chr8_1:2073583-2073602 None:intergenic 30.0%
ACTTTAATCTTTCTTGGCTT+GGG - chr8_1:2073673-2073692 None:intergenic 30.0%
! TGCGTCAATTTTTCATCATT+TGG + chr8_1:2073701-2073720 Msa1172220:intron 30.0%
! GCGTCAATTTTTCATCATTT+GGG + chr8_1:2073702-2073721 Msa1172220:intron 30.0%
! GATTCTTTTAAACTTCTCAC+AGG + chr8_1:2073860-2073879 Msa1172220:intron 30.0%
TTTAAACTTCTCACAGGAAT+TGG + chr8_1:2073866-2073885 Msa1172220:intron 30.0%
AAGAATAATAATACCTGGGA+GGG - chr8_1:2074105-2074124 None:intergenic 30.0%
AAAGAATAATAATACCTGGG+AGG - chr8_1:2074106-2074125 None:intergenic 30.0%
ATGTTTCTTTCTTCACTAAG+AGG + chr8_1:2074419-2074438 Msa1172220:intron 30.0%
TTGCAAATTGAGTTACAGTT+TGG + chr8_1:2074744-2074763 Msa1172220:intron 30.0%
TGCAAATTGAGTTACAGTTT+GGG + chr8_1:2074745-2074764 Msa1172220:intron 30.0%
TATTGTTGCCTATATATGGA+AGG + chr8_1:2074912-2074931 Msa1172220:intron 30.0%
TATCTTCAGGAAAAGGAAAA+GGG - chr8_1:2075045-2075064 None:intergenic 30.0%
TTATATATTGCCATGGAAAC+AGG + chr8_1:2075080-2075099 Msa1172220:CDS 30.0%
!!! ACAGGTATGTGTTACTTTTA+TGG + chr8_1:2075098-2075117 Msa1172220:intron 30.0%
ACAAGTACACATATCAAAAG+GGG - chr8_1:2075204-2075223 None:intergenic 30.0%
CACAAGTACACATATCAAAA+GGG - chr8_1:2075205-2075224 None:intergenic 30.0%
ACACAAGTACACATATCAAA+AGG - chr8_1:2075206-2075225 None:intergenic 30.0%
AACAAACAAATATCCCGTAT+AGG + chr8_1:2075698-2075717 Msa1172220:CDS 30.0%
AAATATCCCGTATAGGTTTA+TGG + chr8_1:2075705-2075724 Msa1172220:CDS 30.0%
AATATCCCGTATAGGTTTAT+GGG + chr8_1:2075706-2075725 Msa1172220:CDS 30.0%
TAGAACATTATTGCATCGTT+TGG + chr8_1:2075830-2075849 Msa1172220:intron 30.0%
AAATCGGAAAAACATAAAGC+GGG + chr8_1:2076132-2076151 Msa1172220:intron 30.0%
!! TAATGTTCACTTTGCTTTTG+TGG + chr8_1:2076309-2076328 Msa1172220:intron 30.0%
!! AATGTTCACTTTGCTTTTGT+GGG + chr8_1:2076310-2076329 Msa1172220:intron 30.0%
TTGTGGACGTTTATAAAATC+CGG + chr8_1:2076425-2076444 Msa1172220:CDS 30.0%
! TCTTTTACAATAAAGGGAGT+TGG - chr8_1:2076526-2076545 None:intergenic 30.0%
!!! TTTGCATGGTTGTTTTTAAG+GGG + chr8_1:2076915-2076934 Msa1172220:intron 30.0%
ATGATACTAGTTGAAACTCT+CGG - chr8_1:2076990-2077009 None:intergenic 30.0%
!!! ATTTTTTAAGCTGTAGGTGT+AGG + chr8_1:2077085-2077104 Msa1172220:intron 30.0%
GAGCTGAAAATCAAAATATG+TGG - chr8_1:2077116-2077135 None:intergenic 30.0%
GTTTGATTGAATGAATGAAC+TGG + chr8_1:2077233-2077252 Msa1172220:intron 30.0%
GTTATAAAATCACGCAAACT+AGG - chr8_1:2077281-2077300 None:intergenic 30.0%
! GTCTAGTATGTTTGTTAAGT+CGG + chr8_1:2077374-2077393 Msa1172220:intron 30.0%
TTCTCCCAATTAGGTTAAAA+TGG + chr8_1:2077412-2077431 Msa1172220:intron 30.0%
!! ACAGCCATTTTAACCTAATT+GGG - chr8_1:2077419-2077438 None:intergenic 30.0%
!! TACAGCCATTTTAACCTAAT+TGG - chr8_1:2077420-2077439 None:intergenic 30.0%
TATGAAATTGAACTGTGTTC+TGG + chr8_1:2077484-2077503 Msa1172220:CDS 30.0%
!!! TTAATGCTTTTAAAGCGTAC+AGG + chr8_1:2077677-2077696 Msa1172220:intron 30.0%
AAAACAGGAATGAATGTCTT+CGG - chr8_1:2077708-2077727 None:intergenic 30.0%
AATCATAAAAGAATTGTGGC+CGG - chr8_1:2077948-2077967 None:intergenic 30.0%
AAGAACATAATTAAGTGAGC+AGG - chr8_1:2078116-2078135 None:intergenic 30.0%
TCTTGAGCAAGGTAAAATTA+TGG - chr8_1:2078444-2078463 None:intergenic 30.0%
! TCAACTTCCATTTCAGTTTT+TGG + chr8_1:2078572-2078591 Msa1172220:intron 30.0%
! GATTTTGTTGCAGATATTGT+TGG - chr8_1:2078859-2078878 None:intergenic 30.0%
GGAAGAAAAAAATAGACAGA+AGG - chr8_1:2078939-2078958 None:intergenic 30.0%
TTGAAGAACTTTGCAATTTG+AGG - chr8_1:2079252-2079271 None:intergenic 30.0%
!!! TTTTAAGGTTACTTTCGGAA+TGG + chr8_1:2079487-2079506 Msa1172220:intron 30.0%
! TTTAAGGTTACTTTCGGAAT+GGG + chr8_1:2079488-2079507 Msa1172220:intron 30.0%
ACTTGTGAAAAAATCCTTGT+AGG - chr8_1:2079709-2079728 None:intergenic 30.0%
!!! ACTTAGTTTTTAGAGTAGTG+GGG - chr8_1:2079763-2079782 None:intergenic 30.0%
!!! GACTTAGTTTTTAGAGTAGT+GGG - chr8_1:2079764-2079783 None:intergenic 30.0%
!!! AGACTTAGTTTTTAGAGTAG+TGG - chr8_1:2079765-2079784 None:intergenic 30.0%
TAACTATGATCTGTTGATCA+GGG - chr8_1:2079866-2079885 None:intergenic 30.0%
ATAACTATGATCTGTTGATC+AGG - chr8_1:2079867-2079886 None:intergenic 30.0%
ACATAAAGCTAACAAAGACA+TGG - chr8_1:2079932-2079951 None:intergenic 30.0%
GAAGTTAAAATTGACAAGTG+TGG + chr8_1:2079999-2080018 Msa1172220:intron 30.0%
! CTTGACCATTAATGACTTTT+AGG + chr8_1:2080069-2080088 Msa1172220:intron 30.0%
AAGCTCAAATAGAGAAAGTT+GGG + chr8_1:2080132-2080151 Msa1172220:CDS 30.0%
TATTTAGCTATGGGAAAATG+TGG - chr8_1:2080276-2080295 None:intergenic 30.0%
!! AAACGGAAGTATTTAGCTAT+GGG - chr8_1:2080285-2080304 None:intergenic 30.0%
ACTACTAACCAATAGGATAA+TGG - chr8_1:2080339-2080358 None:intergenic 30.0%
!! GTTAGGAGTAATTAGTCTTT+AGG - chr8_1:2080528-2080547 None:intergenic 30.0%
CACTTAAGTAGGTTAATGAA+GGG - chr8_1:2080601-2080620 None:intergenic 30.0%
TCACTTAAGTAGGTTAATGA+AGG - chr8_1:2080602-2080621 None:intergenic 30.0%
GAATAGGTAATATTGACCAA+GGG + chr8_1:2080726-2080745 Msa1172220:intron 30.0%
AAGATGGTAAATTGACATCA+TGG + chr8_1:2080750-2080769 Msa1172220:intron 30.0%
TTGACATCATGGCTATAAAT+AGG + chr8_1:2080761-2080780 Msa1172220:intron 30.0%
ATCAGAGTTCACAAAATTTG+CGG + chr8_1:2080801-2080820 Msa1172220:intron 30.0%
ATTTGAGAAATGGTGATTTG+TGG - chr8_1:2080859-2080878 None:intergenic 30.0%
!! ACTTGTTTGTGGTTTTACTA+CGG - chr8_1:2080905-2080924 None:intergenic 30.0%
CTGAAAATTCTACTTGTTTG+TGG - chr8_1:2080916-2080935 None:intergenic 30.0%
TAAATAAGCTTCTTCACACT+TGG - chr8_1:2080953-2080972 None:intergenic 30.0%
AGAAGCTTATTTACTGAAGA+TGG + chr8_1:2080960-2080979 Msa1172220:intron 30.0%
ATAGAAGATGTAGAAATTGG+GGG + chr8_1:2081011-2081030 Msa1172220:intron 30.0%
! ATTTGCCTGCTAGTTTATAT+AGG + chr8_1:2081249-2081268 Msa1172220:intron 30.0%
! TTTGCCTGCTAGTTTATATA+GGG + chr8_1:2081250-2081269 Msa1172220:intron 30.0%
TAGCAATAAATACACATGAG+TGG - chr8_1:2081290-2081309 None:intergenic 30.0%
! TTCTTCTTTTTACCCTTCTT+CGG - chr8_1:2081412-2081431 None:intergenic 30.0%
GAAGAAGAAAAAAGCTGAAA+CGG + chr8_1:2081426-2081445 Msa1172220:CDS 30.0%
AAAACACAAATTTCGTGTGT+AGG + chr8_1:2081616-2081635 Msa1172220:three_prime_UTR 30.0%
!! AGCATGACTAACTCATTTTT+AGG + chr8_1:2081661-2081680 Msa1172220:three_prime_UTR 30.0%
TAATGATAACAGCGAAATGA+AGG - chr8_1:2081714-2081733 None:intergenic 30.0%
! GAACATGACTAACTCATTTT+AGG + chr8_1:2081742-2081761 Msa1172220:three_prime_UTR 30.0%
TGGTGTTCTTGGAATTGAAT+TGG + chr8_1:2073428-2073447 Msa1172220:five_prime_UTR 35.0%
GACTTTAATCTTTCTTGGCT+TGG - chr8_1:2073674-2073693 None:intergenic 35.0%
GTAGTAGTTTCAGATCCAAA+TGG - chr8_1:2073825-2073844 None:intergenic 35.0%
CACAACTCCAAAAGTCAAAT+TGG - chr8_1:2073932-2073951 None:intergenic 35.0%
AGTTGTGAAGAAAGAGAGAT+TGG + chr8_1:2073945-2073964 Msa1172220:five_prime_UTR 35.0%
CTTAGCTTACAATTAGAGTG+AGG - chr8_1:2074006-2074025 None:intergenic 35.0%
GTATCTATCTTATAGCCACT+TGG - chr8_1:2074047-2074066 None:intergenic 35.0%
TAAGCTATATTGGAGGACTT+AGG - chr8_1:2074256-2074275 None:intergenic 35.0%
! TGTGTTTTGTGTATGCTGTA+AGG - chr8_1:2074287-2074306 None:intergenic 35.0%
TTCTTCACTAAGAGGTCAAT+AGG + chr8_1:2074427-2074446 Msa1172220:intron 35.0%
TCTTCACTAAGAGGTCAATA+GGG + chr8_1:2074428-2074447 Msa1172220:intron 35.0%
! CATGGTTCTTTGAAGATTGT+TGG - chr8_1:2074587-2074606 None:intergenic 35.0%
ACATGTTGAGACTTGAGAAA+TGG - chr8_1:2074710-2074729 None:intergenic 35.0%
TTATACTTTGCCACATACAC+AGG + chr8_1:2074771-2074790 Msa1172220:intron 35.0%
TATACTTTGCCACATACACA+GGG + chr8_1:2074772-2074791 Msa1172220:intron 35.0%
GTGATGTACCTTCCATATAT+AGG - chr8_1:2074923-2074942 None:intergenic 35.0%
GAGATAATGACTACACTTCA+AGG - chr8_1:2075023-2075042 None:intergenic 35.0%
GTATCTTCAGGAAAAGGAAA+AGG - chr8_1:2075046-2075065 None:intergenic 35.0%
!! AGAGAAGTATCTTCAGGAAA+AGG - chr8_1:2075052-2075071 None:intergenic 35.0%
CCATGGCAATATATAACACA+AGG - chr8_1:2075076-2075095 None:intergenic 35.0%
CCTTGTGTTATATATTGCCA+TGG + chr8_1:2075073-2075092 Msa1172220:CDS 35.0%
TAATTCAGAACCAATAGCAG+TGG - chr8_1:2075124-2075143 None:intergenic 35.0%
ACTTGTGTTAAATGATGCAG+TGG + chr8_1:2075218-2075237 Msa1172220:intron 35.0%
TTAAATGATGCAGTGGATGT+AGG + chr8_1:2075225-2075244 Msa1172220:intron 35.0%
TAAATGATGCAGTGGATGTA+GGG + chr8_1:2075226-2075245 Msa1172220:intron 35.0%
!! TGTTTTTACCCTTGACTTCT+CGG + chr8_1:2075295-2075314 Msa1172220:CDS 35.0%
!! TGTTTTTACCCTTGTCTTCT+CGG + chr8_1:2075421-2075440 Msa1172220:intron 35.0%
AAGTTACTTCAAGCCAACTA+AGG - chr8_1:2075483-2075502 None:intergenic 35.0%
TCTTGCACGTGAAATTGTAA+CGG - chr8_1:2075600-2075619 None:intergenic 35.0%
ATCATCTTTCTACCACACAA+AGG - chr8_1:2075648-2075667 None:intergenic 35.0%
GAAAGATGATCTGAAGATTG+TGG + chr8_1:2075658-2075677 Msa1172220:intron 35.0%
ATATCCCGTATAGGTTTATG+GGG + chr8_1:2075707-2075726 Msa1172220:CDS 35.0%
AAAACTTATCCCACTAAGTG+GGG - chr8_1:2075869-2075888 None:intergenic 35.0%
CAAAACTTATCCCACTAAGT+GGG - chr8_1:2075870-2075889 None:intergenic 35.0%
GTATCTCACCAAGAAAAGAA+AGG + chr8_1:2075951-2075970 Msa1172220:intron 35.0%
! ATTGAGGTCCTTTCTTTTCT+TGG - chr8_1:2075962-2075981 None:intergenic 35.0%
AAGAAAAGAAAGGACCTCAA+TGG + chr8_1:2075961-2075980 Msa1172220:intron 35.0%
AGAAAAGAAAGGACCTCAAT+GGG + chr8_1:2075962-2075981 Msa1172220:intron 35.0%
TATGTGAAAATCACCCATTG+AGG - chr8_1:2075978-2075997 None:intergenic 35.0%
! TCCACTAAAGTTTTCTGTCA+AGG + chr8_1:2076013-2076032 Msa1172220:intron 35.0%
! CCACTAAAGTTTTCTGTCAA+GGG + chr8_1:2076014-2076033 Msa1172220:intron 35.0%
ATACCATTCCAGCAATAGAA+GGG - chr8_1:2076363-2076382 None:intergenic 35.0%
AATACCATTCCAGCAATAGA+AGG - chr8_1:2076364-2076383 None:intergenic 35.0%
TTCTATTGCTGGAATGGTAT+TGG + chr8_1:2076363-2076382 Msa1172220:CDS 35.0%
CATTCTTCATAAGTTGTTGC+TGG + chr8_1:2076613-2076632 Msa1172220:intron 35.0%
GTAAAGAAAAAGGAATCCCT+AGG + chr8_1:2076733-2076752 Msa1172220:intron 35.0%
ATGTATAATTAGGCCAAAGC+TGG + chr8_1:2077008-2077027 Msa1172220:intron 35.0%
TGTATAATTAGGCCAAAGCT+GGG + chr8_1:2077009-2077028 Msa1172220:intron 35.0%
CAATTCTAACTGACAGCTAT+AGG - chr8_1:2077355-2077374 None:intergenic 35.0%
! TGTTGCATTTTCTCCCAATT+AGG + chr8_1:2077403-2077422 Msa1172220:intron 35.0%
AAATGGCTGTACAATACATG+CGG + chr8_1:2077429-2077448 Msa1172220:CDS 35.0%
ATGACGAATCTAACCACAAT+AGG + chr8_1:2077596-2077615 Msa1172220:intron 35.0%
!! AACCACAATAGGCTTTATTC+AGG + chr8_1:2077607-2077626 Msa1172220:intron 35.0%
AACCTGAATAAAGCCTATTG+TGG - chr8_1:2077612-2077631 None:intergenic 35.0%
CTTGCATGTCCAAATAAAAC+AGG - chr8_1:2077723-2077742 None:intergenic 35.0%
ATCATAAAAGAATTGTGGCC+GGG - chr8_1:2077947-2077966 None:intergenic 35.0%
GAGGACATTGTAGAAGAAAA+TGG - chr8_1:2077977-2077996 None:intergenic 35.0%
! TTTTCAGCAATAGAGACTTG+AGG - chr8_1:2078006-2078025 None:intergenic 35.0%
! GATTTAGGGGATTTGAAACT+TGG + chr8_1:2078042-2078061 Msa1172220:CDS 35.0%
TGAATAACTAGTAGTGTGGA+GGG - chr8_1:2078179-2078198 None:intergenic 35.0%
! AACTAAATTCTTTGAGGACC+AGG - chr8_1:2078305-2078324 None:intergenic 35.0%
! CATTTTGTTGATCTTGAGCA+AGG - chr8_1:2078455-2078474 None:intergenic 35.0%
CTTGCTCAAGATCAACAAAA+TGG + chr8_1:2078453-2078472 Msa1172220:intron 35.0%
TGAAACCTCTAATCATGTCT+GGG + chr8_1:2078519-2078538 Msa1172220:intron 35.0%
GGTGCCTACATTATAAGTAA+TGG - chr8_1:2078986-2079005 None:intergenic 35.0%
GTAGTTTCATCTTCAAGCAA+GGG - chr8_1:2079007-2079026 None:intergenic 35.0%
TGTAGTTTCATCTTCAAGCA+AGG - chr8_1:2079008-2079027 None:intergenic 35.0%
GAAACTACAGATGACAATGA+TGG + chr8_1:2079019-2079038 Msa1172220:CDS 35.0%
! ACAGATGACAATGATGGAAT+TGG + chr8_1:2079025-2079044 Msa1172220:CDS 35.0%
GTGAAATTAAGAAATGGTCC+AGG + chr8_1:2079094-2079113 Msa1172220:intron 35.0%
!! CACTTTAAAATCTACACGAG+AGG + chr8_1:2079161-2079180 Msa1172220:intron 35.0%
ATGCTAGTAACACACTCTTA+TGG + chr8_1:2079185-2079204 Msa1172220:intron 35.0%
! CACTCTTATGGACATTCTTT+TGG + chr8_1:2079197-2079216 Msa1172220:intron 35.0%
! AATACTAGCAAAGGTACAGT+AGG - chr8_1:2079398-2079417 None:intergenic 35.0%
!! TTGTTAGCTTTATGTAAGCC+TGG + chr8_1:2079937-2079956 Msa1172220:intron 35.0%
!!! TGTCGTTGATGACATCATTT+TGG + chr8_1:2079973-2079992 Msa1172220:intron 35.0%
TAATGGTCAAGTTCAAGTGA+AGG - chr8_1:2080060-2080079 None:intergenic 35.0%
CTTGCCCTAAAAGTCATTAA+TGG - chr8_1:2080077-2080096 None:intergenic 35.0%
ATGAGCAACAATCTTCAATC+TGG - chr8_1:2080108-2080127 None:intergenic 35.0%
CAAGCTCAAATAGAGAAAGT+TGG + chr8_1:2080131-2080150 Msa1172220:CDS 35.0%
AGCTCAAATAGAGAAAGTTG+GGG + chr8_1:2080133-2080152 Msa1172220:CDS 35.0%
!! GAAACGGAAGTATTTAGCTA+TGG - chr8_1:2080286-2080305 None:intergenic 35.0%
TTGAGTTTCTACAAAGGGTA+AGG - chr8_1:2080448-2080467 None:intergenic 35.0%
TTACCCTTTGTAGAAACTCA+AGG + chr8_1:2080447-2080466 Msa1172220:intron 35.0%
TCTCCTTGAGTTTCTACAAA+GGG - chr8_1:2080453-2080472 None:intergenic 35.0%
TTCTCCTTGAGTTTCTACAA+AGG - chr8_1:2080454-2080473 None:intergenic 35.0%
AACCTACTTAAGTGAGTTAG+AGG + chr8_1:2080607-2080626 Msa1172220:intron 35.0%
!! GTTTTGGACCTAAATTTGGT+TGG - chr8_1:2080673-2080692 None:intergenic 35.0%
GTCAATATTACCTATTCCCT+TGG - chr8_1:2080723-2080742 None:intergenic 35.0%
GGAATAGGTAATATTGACCA+AGG + chr8_1:2080725-2080744 Msa1172220:intron 35.0%
AATATTGACCAAGGGTAAGA+TGG + chr8_1:2080734-2080753 Msa1172220:intron 35.0%
TCAATTTACCATCTTACCCT+TGG - chr8_1:2080745-2080764 None:intergenic 35.0%
GCTATAAATAGGAGATAGCA+AGG + chr8_1:2080772-2080791 Msa1172220:intron 35.0%
TACTGAAGATGGAAGATCAA+CGG + chr8_1:2080971-2080990 Msa1172220:intron 35.0%
!! TAACGCCTCATTTTTAGAGA+GGG - chr8_1:2081187-2081206 None:intergenic 35.0%
!! ATAACGCCTCATTTTTAGAG+AGG - chr8_1:2081188-2081207 None:intergenic 35.0%
AGAACCCTATATAAACTAGC+AGG - chr8_1:2081257-2081276 None:intergenic 35.0%
TTCTCTTTCATACTTCGCAA+AGG - chr8_1:2081358-2081377 None:intergenic 35.0%
TTCTCAAATCTGTCACTCTT+TGG - chr8_1:2081463-2081482 None:intergenic 35.0%
!! AGATGACTTGTTTCTTCGAT+GGG - chr8_1:2081536-2081555 None:intergenic 35.0%
!! AAGATGACTTGTTTCTTCGA+TGG - chr8_1:2081537-2081556 None:intergenic 35.0%
!! GCCAAATATTGGTTTCTGAT+TGG + chr8_1:2081688-2081707 Msa1172220:three_prime_UTR 35.0%
GCCAATCAGAAACCAATATT+TGG - chr8_1:2081692-2081711 None:intergenic 35.0%
! GAGAAGAAGTATGGTTAGAG+AGG - chr8_1:2073519-2073538 None:intergenic 40.0%
CTTCTTCTCAGCTTATTTGG+TGG + chr8_1:2073530-2073549 Msa1172220:five_prime_UTR 40.0%
!! ACTTTTAAGGGAACGCCATT+TGG + chr8_1:2073807-2073826 Msa1172220:intron 40.0%
ATTCATTTCATGACGCCAAG+TGG + chr8_1:2074029-2074048 Msa1172220:five_prime_UTR 40.0%
TACTGTGCTCAAACTGAACA+TGG + chr8_1:2074509-2074528 Msa1172220:intron 40.0%
GACTTGAGAAATGGATGTTG+AGG - chr8_1:2074701-2074720 None:intergenic 40.0%
! TTTTCCCACAGATACTGATC+CGG - chr8_1:2074809-2074828 None:intergenic 40.0%
GAAAAGGAATTCTCTCTTGC+TGG + chr8_1:2074824-2074843 Msa1172220:CDS 40.0%
GCAGTACATACGCAAACAAT+TGG - chr8_1:2074950-2074969 None:intergenic 40.0%
!! CAAGGAAGAGAAGTATCTTC+AGG - chr8_1:2075058-2075077 None:intergenic 40.0%
GTAACACATACCTGTTTCCA+TGG - chr8_1:2075093-2075112 None:intergenic 40.0%
! ACTTTTATGGCCACTGCTAT+TGG + chr8_1:2075111-2075130 Msa1172220:intron 40.0%
! GTTTTTACCCTTGACTTCTC+GGG + chr8_1:2075296-2075315 Msa1172220:CDS 40.0%
! TTTTTACCCTTGACTTCTCG+GGG + chr8_1:2075297-2075316 Msa1172220:CDS 40.0%
! GTTTTTACCCTTGTCTTCTC+GGG + chr8_1:2075422-2075441 Msa1172220:intron 40.0%
! TTTTTACCCTTGTCTTCTCG+GGG + chr8_1:2075423-2075442 Msa1172220:intron 40.0%
CACACAAAGGAATGGTCAAA+AGG - chr8_1:2075635-2075654 None:intergenic 40.0%
! CTTTTGACCATTCCTTTGTG+TGG + chr8_1:2075633-2075652 Msa1172220:intron 40.0%
CTTTCTACCACACAAAGGAA+TGG - chr8_1:2075643-2075662 None:intergenic 40.0%
TATCCCGTATAGGTTTATGG+GGG + chr8_1:2075708-2075727 Msa1172220:CDS 40.0%
CCAAAACTTATCCCACTAAG+TGG - chr8_1:2075871-2075890 None:intergenic 40.0%
! CCACTTAGTGGGATAAGTTT+TGG + chr8_1:2075868-2075887 Msa1172220:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG + chr8_1:2075871-2075890 Msa1172220:intron 40.0%
CCCTTGACAGAAAACTTTAG+TGG - chr8_1:2076017-2076036 None:intergenic 40.0%
TTTCTCTCCATGCATCTTTG+TGG + chr8_1:2076052-2076071 Msa1172220:intron 40.0%
! GTTTTGTCCACAAAGATGCA+TGG - chr8_1:2076062-2076081 None:intergenic 40.0%
CTTTGTGGACAAAACTGTTG+AGG + chr8_1:2076067-2076086 Msa1172220:intron 40.0%
! GTGGGATTTAGCCTTCTTTA+TGG + chr8_1:2076328-2076347 Msa1172220:intron 40.0%
! TAATCTCATGATGGAGCTTG+TGG + chr8_1:2076408-2076427 Msa1172220:CDS 40.0%
TAAAGGGAGTTGGCAATACT+TGG - chr8_1:2076516-2076535 None:intergenic 40.0%
CATAAGTTGTTGCTGGAATC+TGG + chr8_1:2076620-2076639 Msa1172220:intron 40.0%
! TATTCTAGCCTCTAGCTTGT+AGG + chr8_1:2076655-2076674 Msa1172220:intron 40.0%
!! TGTTTTTAAGGGGTTGTCAC+AGG + chr8_1:2076925-2076944 Msa1172220:intron 40.0%
GTAGTTGAAATTCCCAGCTT+TGG - chr8_1:2077024-2077043 None:intergenic 40.0%
!!! CTGGTTACTTTTGAGCAACA+TGG + chr8_1:2077308-2077327 Msa1172220:intron 40.0%
TCTCATCTCAGAATCCTATG+CGG + chr8_1:2077776-2077795 Msa1172220:CDS 40.0%
GTTAAATACCTCATCCACAC+CGG - chr8_1:2078070-2078089 None:intergenic 40.0%
CTGAATAACTAGTAGTGTGG+AGG - chr8_1:2078180-2078199 None:intergenic 40.0%
GCACTGAATAACTAGTAGTG+TGG - chr8_1:2078183-2078202 None:intergenic 40.0%
TAGAGGTTTCAGGCAAGTTA+AGG - chr8_1:2078510-2078529 None:intergenic 40.0%
CAGACATGATTAGAGGTTTC+AGG - chr8_1:2078520-2078539 None:intergenic 40.0%
CTGAAACCTCTAATCATGTC+TGG + chr8_1:2078518-2078537 Msa1172220:intron 40.0%
GAAACCTCTAATCATGTCTG+GGG + chr8_1:2078520-2078539 Msa1172220:intron 40.0%
AAAGATAACCTGCACACTTG+CGG - chr8_1:2079062-2079081 None:intergenic 40.0%
TCAATGTGTAGGAGGAATGT+TGG - chr8_1:2079347-2079366 None:intergenic 40.0%
CATTCCTCCTACACATTGAA+CGG + chr8_1:2079348-2079367 Msa1172220:intron 40.0%
!! AAAAGCACCGTTCAATGTGT+AGG - chr8_1:2079358-2079377 None:intergenic 40.0%
GATAGACAAAGTTCGAAGAG+TGG + chr8_1:2079530-2079549 Msa1172220:intron 40.0%
AACAATTATGTGCGCCTACA+AGG + chr8_1:2079692-2079711 Msa1172220:intron 40.0%
ATCAACGACATAAGAAAGCC+AGG - chr8_1:2079963-2079982 None:intergenic 40.0%
!!! GACTTTTAGGGCAAGCTAAA+TGG + chr8_1:2080082-2080101 Msa1172220:intron 40.0%
CTCCTCTAACTCACTTAAGT+AGG - chr8_1:2080612-2080631 None:intergenic 40.0%
AAGCAAGGCCAACCAAATTT+AGG + chr8_1:2080662-2080681 Msa1172220:intron 40.0%
AAAAAGGACACCAAGGGAAT+AGG + chr8_1:2080710-2080729 Msa1172220:intron 40.0%
AAGCTTCTTCACACTTGGAA+TGG - chr8_1:2080948-2080967 None:intergenic 40.0%
AGATGTAGAAATTGGGGGAA+AGG + chr8_1:2081016-2081035 Msa1172220:intron 40.0%
! AAGCTCCCTCTCTAAAAATG+AGG + chr8_1:2081179-2081198 Msa1172220:intron 40.0%
GTCATGTCAGAATACTGTGA+AGG + chr8_1:2081321-2081340 Msa1172220:intron 40.0%
AGATGAAAAGAAGCCGAAGA+AGG + chr8_1:2081396-2081415 Msa1172220:CDS 40.0%
GATGAAAAGAAGCCGAAGAA+GGG + chr8_1:2081397-2081416 Msa1172220:CDS 40.0%
! TTGCGGCTTTGTCTTCTTAA+GGG + chr8_1:2081505-2081524 Msa1172220:CDS 40.0%
! CTTCTCAGCTTATTTGGTGG+TGG + chr8_1:2073533-2073552 Msa1172220:five_prime_UTR 45.0%
TGGTAGCTTAGCTCAGACTT+TGG + chr8_1:2073556-2073575 Msa1172220:five_prime_UTR 45.0%
GGCTTGGGAACAGACAAAAA+AGG - chr8_1:2073658-2073677 None:intergenic 45.0%
ATAACCCGGATCAGTATCTG+TGG + chr8_1:2074801-2074820 Msa1172220:CDS 45.0%
TAACCCGGATCAGTATCTGT+GGG + chr8_1:2074802-2074821 Msa1172220:CDS 45.0%
TTTCCCACAGATACTGATCC+GGG - chr8_1:2074808-2074827 None:intergenic 45.0%
GGATCAGTATCTGTGGGAAA+AGG + chr8_1:2074808-2074827 Msa1172220:CDS 45.0%
TTGCTGGTAGAACCTACCAA+AGG + chr8_1:2074840-2074859 Msa1172220:CDS 45.0%
CTCTAAATCCTGCCTTTGGT+AGG - chr8_1:2074855-2074874 None:intergenic 45.0%
CTACCAAAGGCAGGATTTAG+AGG + chr8_1:2074853-2074872 Msa1172220:CDS 45.0%
TTGCCTCTAAATCCTGCCTT+TGG - chr8_1:2074859-2074878 None:intergenic 45.0%
ACACTTCAAGGTATAGCCTC+TGG - chr8_1:2075011-2075030 None:intergenic 45.0%
GAGAATTACAGCCGCTTCAT+TGG - chr8_1:2075258-2075277 None:intergenic 45.0%
AACTTACTTCGTGCCAACCA+AGG - chr8_1:2075352-2075371 None:intergenic 45.0%
!! AGATTGTGGTGTCGCATTTG+AGG + chr8_1:2075672-2075691 Msa1172220:CDS 45.0%
ACCTCCCCCATAAACCTATA+CGG - chr8_1:2075715-2075734 None:intergenic 45.0%
TCCAGCAATAGAAGGGTCTT+CGG - chr8_1:2076356-2076375 None:intergenic 45.0%
AGACCCTTCTATTGCTGGAA+TGG + chr8_1:2076357-2076376 Msa1172220:CDS 45.0%
AATCCGGCTTCCAAAGTTCA+CGG + chr8_1:2076441-2076460 Msa1172220:CDS 45.0%
!! AGAGAGAGTACCGTGAACTT+TGG - chr8_1:2076454-2076473 None:intergenic 45.0%
CAATACTTGGCATCCACACA+GGG - chr8_1:2076503-2076522 None:intergenic 45.0%
TTCAGCTCGACTGTCCAAAT+TGG + chr8_1:2077128-2077147 Msa1172220:intron 45.0%
GAGATGAGATCAGAGTGATG+CGG - chr8_1:2077765-2077784 None:intergenic 45.0%
ATAAAAGAATTGTGGCCGGG+AGG - chr8_1:2077944-2077963 None:intergenic 45.0%
CAATAGAGACTTGAGGAGGA+CGG - chr8_1:2077999-2078018 None:intergenic 45.0%
TCAGCAATAGAGACTTGAGG+AGG - chr8_1:2078003-2078022 None:intergenic 45.0%
! GGGGATTTGAAACTTGGTTC+CGG + chr8_1:2078048-2078067 Msa1172220:CDS 45.0%
! TTTGAAACTTGGTTCCGGTG+TGG + chr8_1:2078053-2078072 Msa1172220:CDS 45.0%
GTTTCAGGCAAGTTAAGGCT+AGG - chr8_1:2078505-2078524 None:intergenic 45.0%
ACGAGATTCTCTCTAGTCTG+CGG + chr8_1:2078794-2078813 Msa1172220:CDS 45.0%
AAAGTTCGAAGAGTGGCTAG+TGG + chr8_1:2079537-2079556 Msa1172220:intron 45.0%
CAAATAGAGAAAGTTGGGGC+AGG + chr8_1:2080137-2080156 Msa1172220:CDS 45.0%
TGCTGATGATAAGCTCTCTC+AGG + chr8_1:2080207-2080226 Msa1172220:CDS 45.0%
! ATGGTGATTTGTGGCGTGAA+GGG - chr8_1:2080850-2080869 None:intergenic 45.0%
! AATGGTGATTTGTGGCGTGA+AGG - chr8_1:2080851-2080870 None:intergenic 45.0%
TGAAGATGGAAGATCAACGG+AGG + chr8_1:2080974-2080993 Msa1172220:intron 45.0%
ATGGAAGATCAACGGAGGTT+AGG + chr8_1:2080979-2080998 Msa1172220:intron 45.0%
TGGAAGATCAACGGAGGTTA+GGG + chr8_1:2080980-2080999 Msa1172220:intron 45.0%
GAGTGACAGATTTGAGAAGC+TGG + chr8_1:2081465-2081484 Msa1172220:CDS 45.0%
TGACAGATTTGAGAAGCTGG+AGG + chr8_1:2081468-2081487 Msa1172220:CDS 45.0%
! CTTGCGGCTTTGTCTTCTTA+AGG + chr8_1:2081504-2081523 Msa1172220:CDS 45.0%
!!! TTTTTAATCATTTTATAAAT+CGG + chr8_1:2076116-2076135 Msa1172220:intron 5.0%
!!! ATAAAGATTTTTTTTTTTTT+TGG + chr8_1:2077052-2077071 Msa1172220:intron 5.0%
!!! TAAAGATTTTTTTTTTTTTT+GGG + chr8_1:2077053-2077072 Msa1172220:intron 5.0%
AGAGGGAAAGAAAGGACAGC+TGG + chr8_1:2073395-2073414 Msa1172220:five_prime_UTR 50.0%
AAAGAAAGGACAGCTGGCTG+AGG + chr8_1:2073401-2073420 Msa1172220:five_prime_UTR 50.0%
!! GCTGAGGTGTTTGGTGTTCT+TGG + chr8_1:2073417-2073436 Msa1172220:five_prime_UTR 50.0%
!! CTCAGCTTATTTGGTGGTGG+TGG + chr8_1:2073536-2073555 Msa1172220:five_prime_UTR 50.0%
ATTTCGTTATTCGCCCTCCC+AGG + chr8_1:2074089-2074108 Msa1172220:CDS 50.0%
ACTTTGCCACATACACAGGG+CGG + chr8_1:2074775-2074794 Msa1172220:intron 50.0%
TATAGTCCGCCCTGTGTATG+TGG - chr8_1:2074784-2074803 None:intergenic 50.0%
TGGTAGAACCTACCAAAGGC+AGG + chr8_1:2074844-2074863 Msa1172220:CDS 50.0%
TAGGGCAGATGCCAATGAAG+CGG + chr8_1:2075244-2075263 Msa1172220:CDS 50.0%
GATGGAGACTATGTCAGCCT+TGG + chr8_1:2075332-2075351 Msa1172220:CDS 50.0%
GAGACTATGTCAGCCTTGGT+TGG + chr8_1:2075336-2075355 Msa1172220:CDS 50.0%
CCTCCCCCATAAACCTATAC+GGG - chr8_1:2075714-2075733 None:intergenic 50.0%
AGGTTTATGGGGGAGGTCAA+TGG + chr8_1:2075718-2075737 Msa1172220:CDS 50.0%
GGTTTATGGGGGAGGTCAAT+GGG + chr8_1:2075719-2075738 Msa1172220:CDS 50.0%
ATGCAACCAACCCCACTTAG+TGG + chr8_1:2075856-2075875 Msa1172220:intron 50.0%
TGCAACCAACCCCACTTAGT+GGG + chr8_1:2075857-2075876 Msa1172220:intron 50.0%
CTTATCCCACTAAGTGGGGT+TGG - chr8_1:2075865-2075884 None:intergenic 50.0%
GGTCTTCGGCTCCATAAAGA+AGG - chr8_1:2076342-2076361 None:intergenic 50.0%
! GTACCGTGAACTTTGGAAGC+CGG - chr8_1:2076447-2076466 None:intergenic 50.0%
GCAATACTTGGCATCCACAC+AGG - chr8_1:2076504-2076523 None:intergenic 50.0%
! AGCCTCTAGCTTGTAGGACT+TGG + chr8_1:2076661-2076680 Msa1172220:intron 50.0%
CACCAAGTCCTACAAGCTAG+AGG - chr8_1:2076666-2076685 None:intergenic 50.0%
TGGCTGTACAATACATGCGG+CGG + chr8_1:2077432-2077451 Msa1172220:CDS 50.0%
ATGGCGACCATAATTCCTCC+CGG + chr8_1:2077926-2077945 Msa1172220:CDS 50.0%
ATTGTGGCCGGGAGGAATTA+TGG - chr8_1:2077936-2077955 None:intergenic 50.0%
AGCTGCACTTATGAGAAGCC+TGG + chr8_1:2078284-2078303 Msa1172220:intron 50.0%
ACCTCTAATCATGTCTGGGG+CGG + chr8_1:2078523-2078542 Msa1172220:intron 50.0%
CTCCCCTGACTGATGTAGTA+GGG + chr8_1:2078905-2078924 Msa1172220:intron 50.0%
CACCCTACTACATCAGTCAG+GGG - chr8_1:2078910-2078929 None:intergenic 50.0%
GCACCCTACTACATCAGTCA+GGG - chr8_1:2078911-2078930 None:intergenic 50.0%
AGCACCGTTCAATGTGTAGG+AGG - chr8_1:2079355-2079374 None:intergenic 50.0%
! AGCTTTATGTAAGCCTGGCC+TGG + chr8_1:2079942-2079961 Msa1172220:intron 50.0%
TGGGGCAGGTGTTCTTCATT+AGG + chr8_1:2080151-2080170 Msa1172220:CDS 50.0%
GGCAGGTGTTCTTCATTAGG+AGG + chr8_1:2080154-2080173 Msa1172220:CDS 50.0%
! TGGTGATTTGTGGCGTGAAG+GGG - chr8_1:2080849-2080868 None:intergenic 50.0%
!! ACACAGGGCGGACTATAACC+CGG + chr8_1:2074787-2074806 Msa1172220:intron 55.0%
GTGCAGCTCAAGAATGCCAG+AGG + chr8_1:2074992-2075011 Msa1172220:intron 55.0%
TCGGGGTCAGGCTTATCTGA+TGG + chr8_1:2075314-2075333 Msa1172220:CDS 55.0%
TCGGGGTCAGGCTTATCTGA+TGG + chr8_1:2075314-2075333 Msa1172220:CDS 55.0%
CCCGTATAGGTTTATGGGGG+AGG + chr8_1:2075711-2075730 Msa1172220:CDS 55.0%
GGTCAATGGGCGCAGTTACT+AGG + chr8_1:2075732-2075751 Msa1172220:CDS 55.0%
GCCGAAGACCCTTCTATTGC+TGG + chr8_1:2076352-2076371 Msa1172220:CDS 55.0%
TCTGTGCGTGTATCCCTGTG+TGG + chr8_1:2076487-2076506 Msa1172220:intron 55.0%
GGCTGTACAATACATGCGGC+GGG + chr8_1:2077433-2077452 Msa1172220:CDS 55.0%
!! GCGGCGGGTTATTGAGAAGA+AGG + chr8_1:2077448-2077467 Msa1172220:CDS 55.0%
TAGAGACTTGAGGAGGACGG+AGG - chr8_1:2077996-2078015 None:intergenic 55.0%
ACTTGGTTCCGGTGTGGATG+AGG + chr8_1:2078059-2078078 Msa1172220:CDS 55.0%
TCCGCCCCAGACATGATTAG+AGG - chr8_1:2078527-2078546 None:intergenic 55.0%
GCTCCCCTGACTGATGTAGT+AGG + chr8_1:2078904-2078923 Msa1172220:intron 55.0%
GGCACCCTACTACATCAGTC+AGG - chr8_1:2078912-2078931 None:intergenic 55.0%
GCACACTTGCGGCTTCATCA+GGG - chr8_1:2079051-2079070 None:intergenic 55.0%
TGCACACTTGCGGCTTCATC+AGG - chr8_1:2079052-2079071 None:intergenic 55.0%
TGATGAAGCCGCAAGTGTGC+AGG + chr8_1:2079051-2079070 Msa1172220:CDS 55.0%
CGACATAAGAAAGCCAGGCC+AGG - chr8_1:2079958-2079977 None:intergenic 55.0%
GCGTGAAGGGGTGAAGTTTG+TGG - chr8_1:2080837-2080856 None:intergenic 55.0%
! GGACAGCTGGCTGAGGTGTT+TGG + chr8_1:2073408-2073427 Msa1172220:five_prime_UTR 60.0%
ACCCTTGACTTCTCGGGGTC+AGG + chr8_1:2075302-2075321 Msa1172220:CDS 60.0%
GCCTGACCCCGAGAAGTCAA+GGG - chr8_1:2075306-2075325 None:intergenic 60.0%
AGCCTGACCCCGAGAAGTCA+AGG - chr8_1:2075307-2075326 None:intergenic 60.0%
ACCCTTGTCTTCTCGGGGTC+AGG + chr8_1:2075428-2075447 Msa1172220:intron 60.0%
GCCTGACCCCGAGAAGACAA+GGG - chr8_1:2075432-2075451 None:intergenic 60.0%
AGCCTGACCCCGAGAAGACA+AGG - chr8_1:2075433-2075452 None:intergenic 60.0%
AGGCTCTCAGCAGACGCTTG+CGG + chr8_1:2081488-2081507 Msa1172220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 2073367 2081788 2073367 ID=Msa1172220;Name=Msa1172220
chr8_1 mRNA 2073367 2081788 2073367 ID=Msa1172220-mRNA-1;Parent=Msa1172220;Name=Msa1172220-mRNA-1;_AED=0.21;_eAED=0.21;_QI=428|0.92|0.92|1|0.92|0.92|14|230|501
chr8_1 exon 2073367 2073606 2073367 ID=Msa1172220-mRNA-1:exon:757;Parent=Msa1172220-mRNA-1
chr8_1 exon 2073882 2074110 2073882 ID=Msa1172220-mRNA-1:exon:758;Parent=Msa1172220-mRNA-1
chr8_1 exon 2074793 2074874 2074793 ID=Msa1172220-mRNA-1:exon:759;Parent=Msa1172220-mRNA-1
chr8_1 exon 2074998 2075101 2074998 ID=Msa1172220-mRNA-1:exon:760;Parent=Msa1172220-mRNA-1
chr8_1 exon 2075238 2075364 2075238 ID=Msa1172220-mRNA-1:exon:761;Parent=Msa1172220-mRNA-1
chr8_1 exon 2075659 2075753 2075659 ID=Msa1172220-mRNA-1:exon:762;Parent=Msa1172220-mRNA-1
chr8_1 exon 2076339 2076462 2076339 ID=Msa1172220-mRNA-1:exon:763;Parent=Msa1172220-mRNA-1
chr8_1 exon 2077425 2077505 2077425 ID=Msa1172220-mRNA-1:exon:764;Parent=Msa1172220-mRNA-1
chr8_1 exon 2077699 2077797 2077699 ID=Msa1172220-mRNA-1:exon:765;Parent=Msa1172220-mRNA-1
chr8_1 exon 2077901 2078080 2077901 ID=Msa1172220-mRNA-1:exon:766;Parent=Msa1172220-mRNA-1
chr8_1 exon 2078784 2078918 2078784 ID=Msa1172220-mRNA-1:exon:767;Parent=Msa1172220-mRNA-1
chr8_1 exon 2079001 2079072 2079001 ID=Msa1172220-mRNA-1:exon:768;Parent=Msa1172220-mRNA-1
chr8_1 exon 2080091 2080228 2080091 ID=Msa1172220-mRNA-1:exon:769;Parent=Msa1172220-mRNA-1
chr8_1 exon 2081331 2081788 2081331 ID=Msa1172220-mRNA-1:exon:770;Parent=Msa1172220-mRNA-1
chr8_1 five_prime_UTR 2073367 2073606 2073367 ID=Msa1172220-mRNA-1:five_prime_utr;Parent=Msa1172220-mRNA-1
chr8_1 five_prime_UTR 2073882 2074069 2073882 ID=Msa1172220-mRNA-1:five_prime_utr;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2074070 2074110 2074070 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2074793 2074874 2074793 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2074998 2075101 2074998 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2075238 2075364 2075238 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2075659 2075753 2075659 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2076339 2076462 2076339 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2077425 2077505 2077425 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2077699 2077797 2077699 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2077901 2078080 2077901 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2078784 2078918 2078784 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2079001 2079072 2079001 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2080091 2080228 2080091 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 CDS 2081331 2081558 2081331 ID=Msa1172220-mRNA-1:cds;Parent=Msa1172220-mRNA-1
chr8_1 three_prime_UTR 2081559 2081788 2081559 ID=Msa1172220-mRNA-1:three_prime_utr;Parent=Msa1172220-mRNA-1
Gene Sequence

>Msa1172220

ATGATTGAGCAATTCATCAATTTCGTTATTCGCCCTCCCAGGGCGGACTATAACCCGGATCAGTATCTGTGGGAAAAGGAATTCTCTCTTGCTGGTAGAACCTACCAAAGGCAGGATTTAGAGCTCAAGAATGCCAGAGGCTATACCTTGAAGTGTAGTCATTATCTCCCTTTTCCTTTTCCTGAAGATACTTCTCTTCCTTGTGTTATATATTGCCATGGAAACAGTGGATGTAGGGCAGATGCCAATGAAGCGGCTGTAATTCTCTTGCCATCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTCAGCCTTGGTTGGCACGAAAAAGATGATCTGAAGATTGTGGTGTCGCATTTGAGGAGCAACAAACAAATATCCCGTATAGGTTTATGGGGGAGGTCAATGGGCGCAGTTACTAGCCTTCTTTATGGAGCCGAAGACCCTTCTATTGCTGGAATGGTATTGGATAGCGCCTTTTCAAACTTATATAATCTCATGATGGAGCTTGTGGACGTTTATAAAATCCGGCTTCCAAAGTTCACGGTTAAAATGGCTGTACAATACATGCGGCGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAAATTGAACTGTGTTCTGGTTGCTCCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGTGATGACAAATTCATTCAGCCGCATCACTCTGATCTCATCTCAGAATCCTATGCGGGTGATAAAAATATCATTAAATTTGATGGCGACCATAATTCCTCCCGGCCACAATTCTTTTATGATTCAGTTTCCATTTTCTTCTACAATGTCCTCCGTCCTCCTCAAGTCTCTATTGCTGAAAAGCTCGAGAAATATTATGATTTAGGGGATTTGAAACTTGGTTCCGGTGTGGATGAGAGCGTATTATACGAGATTCTCTCTAGTCTGCGGTCTGCAACTACTGATGCTGCAAGTTCATCTTCTACATTTCCAACAATATCTGCAACAAAATCAGTTAGCGAACTTCTTTCAGAAGTTGCTCCCCTGACTGATGCACCCTTGCTTGAAGATGAAACTACAGATGACAATGATGGAATTGGCCCTGATGAAGCCGCAAGTGTGCAGGGCAAGCTAAATGGCCAGATTGAAGATTGTTGCTCATATACAAGCTCAAATAGAGAAAGTTGGGGCAGGTGTTCTTCATTAGGAGGCAGTGATCAAGAATTTTGTGCAGATTTAAGTGCTGATGATAAGCTCTCTCAGAATACTGTGAAGGTATTTGCAACACCTTTGCGAAGTATGAAAGAGAAATCATCAGACTCAAAAGAAGATGAAAAGAAGCCGAAGAAGGGTAAAAAGAAGAAGAAAAAAGCTGAAACGGTTGCAAAGAAACCAAAGAGTGACAGATTTGAGAAGCTGGAGGCTCTCAGCAGACGCTTGCGGCTTTGTCTTCTTAAGGGATCAACCCATCGAAGAAACAAGTCATCTTGA

Protein sequence

>Msa1172220

MIEQFINFVIRPPRADYNPDQYLWEKEFSLAGRTYQRQDLELKNARGYTLKCSHYLPFPFPEDTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKIVVSHLRSNKQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLYNLMMELVDVYKIRLPKFTVKMAVQYMRRVIEKKAKFDIMKLNCVLVAPKTFIPVLFGHASDDKFIQPHHSDLISESYAGDKNIIKFDGDHNSSRPQFFYDSVSIFFYNVLRPPQVSIAEKLEKYYDLGDLKLGSGVDESVLYEILSSLRSATTDAASSSSTFPTISATKSVSELLSEVAPLTDAPLLEDETTDDNDGIGPDEAASVQGKLNGQIEDCCSYTSSNRESWGRCSSLGGSDQEFCADLSADDKLSQNTVKVFATPLRSMKEKSSDSKEDEKKPKKGKKKKKKAETVAKKPKSDRFEKLEALSRRLRLCLLKGSTHRRNKSS*