AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792100 MtrunA17_Chr4g0076631 99.402 502 2 1 1 501 1 502 0.0 1024
Msa0792100 MtrunA17_Chr2g0291031 68.263 501 119 5 1 501 1 461 0.0 638
Msa0792100 MtrunA17_Chr4g0065941 68.792 298 90 1 2 299 1 295 3.50e-154 442
Msa0792100 MtrunA17_Chr2g0287221 62.179 312 115 1 2 313 1 309 6.23e-146 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792100 AT4G17150.1 64.522 513 148 5 1 500 10 501 0.0 626
Msa0792100 AT4G17150.4 71.182 406 106 4 1 398 10 412 0.0 558
Msa0792100 AT4G17150.5 63.002 473 141 5 41 500 26 477 0.0 555
Msa0792100 AT4G17150.3 76.796 362 82 1 1 360 10 371 0.0 549
Msa0792100 AT4G17150.2 76.796 362 82 1 1 360 10 371 0.0 549
Msa0792100 AT4G14290.2 71.429 287 82 0 2 288 1 287 5.96e-158 459
Msa0792100 AT4G14290.1 71.429 287 82 0 2 288 1 287 8.94e-158 460
Msa0792100 AT3G23540.1 67.657 303 95 1 2 301 1 303 1.30e-155 455
Msa0792100 AT3G23540.3 69.091 275 82 1 30 301 2 276 1.66e-141 418
Msa0792100 AT4G14290.5 72.532 233 64 0 56 288 1 233 2.23e-127 380
Msa0792100 AT3G23540.2 67.500 160 49 1 145 301 1 160 3.40e-73 238
Msa0792100 AT4G14290.3 70.714 140 41 0 149 288 33 172 1.14e-67 224
Msa0792100 AT4G14290.4 70.803 137 40 0 152 288 1 137 3.82e-67 222

Find 149 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGGTGTTTGGTGTTCT+TGG 0.142159 5_3:-3209789 Msa0792100:five_prime_UTR
GTGGGATTTAGCCTTCTTTA+TGG 0.167652 5_3:-3206887 Msa0792100:intron
CTCGAGAAATATTATGATTT+AGG 0.172301 5_3:-3205188 Msa0792100:CDS
AAATATCCCGTATAGGTTTA+TGG 0.173583 5_3:-3207509 Msa0792100:CDS
TTTAGGAATTGCCAAATATT+TGG 0.181328 5_3:-3201611 Msa0792100:three_prime_UTR
TTCTCCCAATTAGGTTAAAA+TGG 0.185844 5_3:-3205803 Msa0792100:intron
ATACTTCTTCTCAGCTTATT+TGG 0.201453 5_3:-3209679 Msa0792100:five_prime_UTR
TTGCTAACAAGCCAAATATT+TGG 0.214997 5_3:+3201600 None:intergenic
CTTGCGGCTTTGTCTTCTTA+AGG 0.270780 5_3:-3201866 Msa0792100:CDS
GCCAATCAGAAACCAATATT+TGG 0.276128 5_3:+3201681 None:intergenic
TTCTCAAATCTGTCACTCTT+TGG 0.286897 5_3:+3201910 None:intergenic
TGCACACTTGCGGCTTCATC+AGG 0.294214 5_3:+3204169 None:intergenic
AGTTGTGAAGAAAGAGAGAT+TGG 0.297966 5_3:-3209269 Msa0792100:five_prime_UTR
TCGAGAAATATTATGATTTA+GGG 0.306533 5_3:-3205187 Msa0792100:CDS
GAGGACATTGTAGAAGAAAA+TGG 0.307349 5_3:+3205241 None:intergenic
TGGGGCAGGTGTTCTTCATT+AGG 0.330333 5_3:-3203067 Msa0792100:CDS
TTCTATTGCTGGAATGGTAT+TGG 0.336375 5_3:-3206852 Msa0792100:CDS
TTGCGGCTTTGTCTTCTTAA+GGG 0.349769 5_3:-3201865 Msa0792100:CDS
ACCCTTGACTTCTCGGGGTC+AGG 0.351572 5_3:-3207912 Msa0792100:CDS
GCCAAATATTGGTTTCTGAT+TGG 0.356584 5_3:-3201682 Msa0792100:three_prime_UTR
GAGAATTACAGCCGCTTCAT+TGG 0.360136 5_3:+3207959 None:intergenic
AATATCCCGTATAGGTTTAT+GGG 0.365038 5_3:-3207508 Msa0792100:CDS
AATACCATTCCAGCAATAGA+AGG 0.376973 5_3:+3206854 None:intergenic
GCCGAAGACCCTTCTATTGC+TGG 0.379355 5_3:-3206863 Msa0792100:CDS
AAGCTCAAATAGAGAAAGTT+GGG 0.381819 5_3:-3203086 Msa0792100:CDS
TTATATATTGCCATGGAAAC+AGG 0.382845 5_3:-3208134 Msa0792100:intron
ATTACAATTAGATTGACTAT+TGG 0.394016 5_3:+3201783 None:intergenic
AAATAAGCTGAGAAGAAGTA+TGG 0.398646 5_3:+3209681 None:intergenic
TATGAAATTGAACTGTGTTC+TGG 0.398736 5_3:-3205731 Msa0792100:intron
CTACCAAAGGCAGGATTTAG+AGG 0.404625 5_3:-3208361 Msa0792100:intron
GAAAAGGAATTCTCTCTTGC+TGG 0.411836 5_3:-3208390 Msa0792100:CDS
CGAAATGAAATGAAATGAAA+AGG 0.413453 5_3:+3209622 None:intergenic
GATTTAGGGGATTTGAAACT+TGG 0.415584 5_3:-3205173 Msa0792100:CDS
TGGTGTTCTTGGAATTGAAT+TGG 0.420124 5_3:-3209778 Msa0792100:five_prime_UTR
ACAGATGACAATGATGGAAT+TGG 0.425584 5_3:-3204193 Msa0792100:CDS
GGTCAATGGGCGCAGTTACT+AGG 0.428894 5_3:-3207482 Msa0792100:intron
TTGCCTCTAAATCCTGCCTT+TGG 0.430450 5_3:+3208358 None:intergenic
TTGTGGACGTTTATAAAATC+CGG 0.430844 5_3:-3206790 Msa0792100:CDS
GTATCTTCAGGAAAAGGAAA+AGG 0.432727 5_3:+3208171 None:intergenic
GGGGATTTGAAACTTGGTTC+CGG 0.432780 5_3:-3205167 Msa0792100:CDS
CTTGCATGTCCAAATAAAAC+AGG 0.434305 5_3:+3205495 None:intergenic
CTCAGCTTATTTGGTGGTGG+TGG 0.435731 5_3:-3209670 Msa0792100:five_prime_UTR
GGACAGCTGGCTGAGGTGTT+TGG 0.436350 5_3:-3209798 Msa0792100:five_prime_UTR
CTTCTCAGCTTATTTGGTGG+TGG 0.438281 5_3:-3209673 Msa0792100:five_prime_UTR
GAGTGACAGATTTGAGAAGC+TGG 0.441559 5_3:-3201905 Msa0792100:CDS
AGAGAGAGTACCGTGAACTT+TGG 0.446970 5_3:+3206764 None:intergenic
AGATGACTTGTTTCTTCGAT+GGG 0.453630 5_3:+3201837 None:intergenic
AGAGAAGTATCTTCAGGAAA+AGG 0.459180 5_3:+3208165 None:intergenic
CTTCTTCTCAGCTTATTTGG+TGG 0.459744 5_3:-3209676 Msa0792100:five_prime_UTR
ATGAGCAACAATCTTCAATC+TGG 0.460440 5_3:+3203113 None:intergenic
GGCACCCTACTACATCAGTC+AGG 0.465060 5_3:+3204309 None:intergenic
AAGATGACTTGTTTCTTCGA+TGG 0.466764 5_3:+3201836 None:intergenic
CAAGGAAGAGAAGTATCTTC+AGG 0.469007 5_3:+3208159 None:intergenic
CAAGCTCAAATAGAGAAAGT+TGG 0.469326 5_3:-3203087 Msa0792100:CDS
GAGATAATGACTACACTTCA+AGG 0.474252 5_3:+3208194 None:intergenic
TTTCCCACAGATACTGATCC+GGG 0.477800 5_3:+3208409 None:intergenic
AAAACAGGAATGAATGTCTT+CGG 0.479091 5_3:+3205510 None:intergenic
TCCAGCAATAGAAGGGTCTT+CGG 0.485556 5_3:+3206862 None:intergenic
GAGATTATATAAGTTTGAAA+AGG 0.488604 5_3:+3206823 None:intergenic
AAAAGAATAAATTGATAAGA+GGG 0.488945 5_3:-3209828 Msa0792100:five_prime_UTR
ATTGTGGCCGGGAGGAATTA+TGG 0.491620 5_3:+3205282 None:intergenic
TGATGAAGCCGCAAGTGTGC+AGG 0.493167 5_3:-3204167 Msa0792100:intron
GAGAAGAAGTATGGTTAGAG+AGG 0.493381 5_3:+3209690 None:intergenic
AAAACACAAATTTCGTGTGT+AGG 0.494347 5_3:-3201754 Msa0792100:three_prime_UTR
AACAAACAAATATCCCGTAT+AGG 0.496030 5_3:-3207516 Msa0792100:CDS
GAAATGAAATGAAATGAAAA+GGG 0.497133 5_3:+3209623 None:intergenic
TAATGATAACAGCGAAATGA+AGG 0.502100 5_3:+3201659 None:intergenic
CTCTAAATCCTGCCTTTGGT+AGG 0.502347 5_3:+3208362 None:intergenic
TGCTGATGATAAGCTCTCTC+AGG 0.502510 5_3:-3203011 Msa0792100:intron
AATTGATAAGAGGGAAAGAA+AGG 0.506532 5_3:-3209819 Msa0792100:five_prime_UTR
TGGTAGCTTAGCTCAGACTT+TGG 0.510902 5_3:-3209650 Msa0792100:five_prime_UTR
TTAAATGATGCAGTGGATGT+AGG 0.518787 5_3:-3207989 Msa0792100:intron
AGATGAAAAGAAGCCGAAGA+AGG 0.519297 5_3:-3201974 Msa0792100:CDS
AGACCCTTCTATTGCTGGAA+TGG 0.522988 5_3:-3206858 Msa0792100:CDS
GAAACTACAGATGACAATGA+TGG 0.526697 5_3:-3204199 Msa0792100:CDS
GGATCAGTATCTGTGGGAAA+AGG 0.529501 5_3:-3208406 Msa0792100:CDS
ATTTCGTTATTCGCCCTCCC+AGG 0.531333 5_3:-3209125 Msa0792100:intron
ATCATAAAAGAATTGTGGCC+GGG 0.532049 5_3:+3205271 None:intergenic
AGATTGTGGTGTCGCATTTG+AGG 0.532944 5_3:-3207542 Msa0792100:CDS
AAGAATAATAATACCTGGGA+GGG 0.533025 5_3:+3209112 None:intergenic
TCGGGGTCAGGCTTATCTGA+TGG 0.533663 5_3:-3207900 Msa0792100:CDS
GCGGCGGGTTATTGAGAAGA+AGG 0.534978 5_3:-3205767 Msa0792100:CDS
TATCTTCAGGAAAAGGAAAA+GGG 0.536605 5_3:+3208172 None:intergenic
GGCAGGTGTTCTTCATTAGG+AGG 0.539678 5_3:-3203064 Msa0792100:CDS
CCTTGTGTTATATATTGCCA+TGG 0.540136 5_3:-3208141 Msa0792100:CDS
GATGAAAAGAAGCCGAAGAA+GGG 0.543208 5_3:-3201973 Msa0792100:CDS
GTATCTATCTTATAGCCACT+TGG 0.543355 5_3:+3209170 None:intergenic
TGTAGTTTCATCTTCAAGCA+AGG 0.545400 5_3:+3204213 None:intergenic
GTACCGTGAACTTTGGAAGC+CGG 0.545459 5_3:+3206771 None:intergenic
AGCCTGACCCCGAGAAGTCA+AGG 0.546559 5_3:+3207910 None:intergenic
AAACTTATATAATCTCATGA+TGG 0.546998 5_3:-3206816 Msa0792100:CDS
TAATCTCATGATGGAGCTTG+TGG 0.547533 5_3:-3206807 Msa0792100:CDS
ACTTGGTTCCGGTGTGGATG+AGG 0.547607 5_3:-3205156 Msa0792100:intron
TTCTCTTTCATACTTCGCAA+AGG 0.549432 5_3:+3202015 None:intergenic
AATCATAAAAGAATTGTGGC+CGG 0.549501 5_3:+3205270 None:intergenic
GTAACACATACCTGTTTCCA+TGG 0.551077 5_3:+3208124 None:intergenic
GTATTAAATTAATACCGCAT+AGG 0.557960 5_3:+3205425 None:intergenic
AGGCTCTCAGCAGACGCTTG+CGG 0.561762 5_3:-3201882 Msa0792100:CDS
GGCTGTACAATACATGCGGC+GGG 0.564086 5_3:-3205782 Msa0792100:CDS
AGAGGGAAAGAAAGGACAGC+TGG 0.565313 5_3:-3209811 Msa0792100:five_prime_UTR
TATGATATGATATACAAAAG+AGG 0.565995 5_3:+3201811 None:intergenic
ATATCCCGTATAGGTTTATG+GGG 0.567406 5_3:-3207507 Msa0792100:CDS
TAAATGATGCAGTGGATGTA+GGG 0.568274 5_3:-3207988 Msa0792100:intron
CAAATAGAGAAAGTTGGGGC+AGG 0.573325 5_3:-3203081 Msa0792100:CDS
ACTGAATCATAAAAGAATTG+TGG 0.574633 5_3:+3205266 None:intergenic
ATGGCGACCATAATTCCTCC+CGG 0.574950 5_3:-3205289 Msa0792100:CDS
ACACTTCAAGGTATAGCCTC+TGG 0.577166 5_3:+3208206 None:intergenic
GTAGTTTCATCTTCAAGCAA+GGG 0.578611 5_3:+3204214 None:intergenic
GGTCTTCGGCTCCATAAAGA+AGG 0.579635 5_3:+3206876 None:intergenic
AAAGAAAGGACAGCTGGCTG+AGG 0.581463 5_3:-3209805 Msa0792100:five_prime_UTR
GATGGAGACTATGTCAGCCT+TGG 0.581558 5_3:-3207882 Msa0792100:CDS
GCACCCTACTACATCAGTCA+GGG 0.585755 5_3:+3204310 None:intergenic
ATGAAATGAAATGAAAAGGG+TGG 0.589383 5_3:+3209626 None:intergenic
GAAAGATGATCTGAAGATTG+TGG 0.598855 5_3:-3207556 Msa0792100:CDS
AATCCGGCTTCCAAAGTTCA+CGG 0.601063 5_3:-3206774 Msa0792100:intron
TGGTAGAACCTACCAAAGGC+AGG 0.601644 5_3:-3208370 Msa0792100:CDS
TGAAATGAAATGAAAAGGGT+GGG 0.607773 5_3:+3209627 None:intergenic
GAGACTATGTCAGCCTTGGT+TGG 0.607802 5_3:-3207878 Msa0792100:CDS
AAAGATAACCTGCACACTTG+CGG 0.608984 5_3:+3204159 None:intergenic
CGAGAAATATTATGATTTAG+GGG 0.610738 5_3:-3205186 Msa0792100:CDS
AACTTACTTCGTGCCAACCA+AGG 0.612981 5_3:+3207865 None:intergenic
GCACACTTGCGGCTTCATCA+GGG 0.613086 5_3:+3204170 None:intergenic
TTTGAAACTTGGTTCCGGTG+TGG 0.615743 5_3:-3205162 Msa0792100:CDS
ATACCATTCCAGCAATAGAA+GGG 0.616504 5_3:+3206855 None:intergenic
CCATGGCAATATATAACACA+AGG 0.617756 5_3:+3208141 None:intergenic
CAATAGAGACTTGAGGAGGA+CGG 0.628343 5_3:+3205219 None:intergenic
ATTCATTTCATGACGCCAAG+TGG 0.629844 5_3:-3209185 Msa0792100:five_prime_UTR
GTTAAATACCTCATCCACAC+CGG 0.635215 5_3:+3205148 None:intergenic
TGGCTGTACAATACATGCGG+CGG 0.639633 5_3:-3205783 Msa0792100:CDS
TCAGCAATAGAGACTTGAGG+AGG 0.640185 5_3:+3205215 None:intergenic
GCCTGACCCCGAGAAGTCAA+GGG 0.640197 5_3:+3207911 None:intergenic
TAGGGCAGATGCCAATGAAG+CGG 0.642371 5_3:-3207970 Msa0792100:CDS
ATAACCCGGATCAGTATCTG+TGG 0.647394 5_3:-3208413 Msa0792100:CDS
ACACAGGGCGGACTATAACC+CGG 0.648856 5_3:-3208427 Msa0792100:intron
GTCATGTCAGAATACTGTGA+AGG 0.652766 5_3:-3202049 Msa0792100:intron
ACGAGATTCTCTCTAGTCTG+CGG 0.652977 5_3:-3204424 Msa0792100:CDS
AAAGAATAATAATACCTGGG+AGG 0.656822 5_3:+3209111 None:intergenic
TGACAGATTTGAGAAGCTGG+AGG 0.661868 5_3:-3201902 Msa0792100:CDS
TAACCCGGATCAGTATCTGT+GGG 0.666671 5_3:-3208412 Msa0792100:CDS
AGCTCAAATAGAGAAAGTTG+GGG 0.674107 5_3:-3203085 Msa0792100:CDS
AAATGGCTGTACAATACATG+CGG 0.675349 5_3:-3205786 Msa0792100:CDS
TTGCTGGTAGAACCTACCAA+AGG 0.679162 5_3:-3208374 Msa0792100:CDS
CACCCTACTACATCAGTCAG+GGG 0.681270 5_3:+3204311 None:intergenic
GTGCAGCTCAAGAATGCCAG+AGG 0.686724 5_3:-3208222 Msa0792100:intron
ATAAAAGAATTGTGGCCGGG+AGG 0.694195 5_3:+3205274 None:intergenic
TAGAGACTTGAGGAGGACGG+AGG 0.699920 5_3:+3205222 None:intergenic
TATCCCGTATAGGTTTATGG+GGG 0.742479 5_3:-3207506 Msa0792100:CDS
GAGATGAGATCAGAGTGATG+CGG 0.757183 5_3:+3205453 None:intergenic
TCTCATCTCAGAATCCTATG+CGG 0.772408 5_3:-3205439 Msa0792100:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTAAGATTTTATTT+TGG - chr5_3:3205002-3205021 Msa0792100:intron 10.0%
!! AAAAATATCATTAAATTTGA+TGG - chr5_3:3206135-3206154 Msa0792100:intron 10.0%
!! AAAGTAACAATAATAATTTA+TGG + chr5_3:3206883-3206902 None:intergenic 10.0%
!! AATTATATTGTAATTATGTT+AGG + chr5_3:3208618-3208637 None:intergenic 10.0%
!! AAAAAAGGAAAAAAAAAAAA+AGG - chr5_3:3208767-3208786 Msa0792100:intron 10.0%
!! AAAAAGAATAAATTGATAAG+AGG - chr5_3:3201614-3201633 Msa0792100:three_prime_UTR 15.0%
!! AAAAGAATAAATTGATAAGA+GGG - chr5_3:3201615-3201634 Msa0792100:three_prime_UTR 15.0%
!! AAAAAAGAATAATAATACCT+GGG + chr5_3:3202338-3202357 None:intergenic 15.0%
!! TAAAAAAGAATAATAATACC+TGG + chr5_3:3202339-3202358 None:intergenic 15.0%
!!! TCTTTTTTATTCATCAAATT+TGG - chr5_3:3202350-3202369 Msa0792100:intron 15.0%
!!! AAAACTTTTTGAAATAGTAT+GGG + chr5_3:3202771-3202790 None:intergenic 15.0%
!! AAGTTAGATAGAAATATATA+TGG - chr5_3:3204029-3204048 Msa0792100:intron 15.0%
!! AAATTGTTAAAACAAAAGTT+GGG - chr5_3:3205067-3205086 Msa0792100:intron 15.0%
!!! CAAAGAACATAATTTTTTTT+GGG + chr5_3:3206374-3206393 None:intergenic 15.0%
!!! ACAAAGAACATAATTTTTTT+TGG + chr5_3:3206375-3206394 None:intergenic 15.0%
!!! ATGGTAATATTTAAGTTATA+TGG - chr5_3:3206580-3206599 Msa0792100:intron 15.0%
!! TAAAATTGAAGATATTAACT+TGG - chr5_3:3206627-3206646 Msa0792100:intron 15.0%
!! AAAATGGAAAAACAAAAAAA+AGG - chr5_3:3206694-3206713 Msa0792100:intron 15.0%
!! AACATTATCATGATTATATA+TGG - chr5_3:3206821-3206840 Msa0792100:CDS 15.0%
!!! TTATTATTGTTACTTTTTTG+TGG - chr5_3:3206887-3206906 Msa0792100:intron 15.0%
!!! TTTTATATTAGTATGGTTTT+AGG - chr5_3:3206915-3206934 Msa0792100:intron 15.0%
!!! AACTAAATAGAAAGTTTTTT+TGG + chr5_3:3207185-3207204 None:intergenic 15.0%
!! TAAAATATAATTCACGAAAT+CGG + chr5_3:3207658-3207677 None:intergenic 15.0%
!! ATGCTAAAATTATAAAAATG+TGG + chr5_3:3208259-3208278 None:intergenic 15.0%
!!! TTTTTTTCCTTTTTTAGTTT+TGG + chr5_3:3208762-3208781 None:intergenic 15.0%
!! GAAATGAAATGAAATGAAAA+GGG + chr5_3:3201823-3201842 None:intergenic 20.0%
!!! CTTTTCATTTCATTTCATTT+CGG - chr5_3:3201822-3201841 Msa0792100:exon 20.0%
!!! ACTACTACTTTTTCATTTTT+CGG - chr5_3:3202066-3202085 Msa0792100:intron 20.0%
!!! ATTTTAATAAGCTATATTGG+AGG + chr5_3:3202492-3202511 None:intergenic 20.0%
!!! GGTATTTTAATAAGCTATAT+TGG + chr5_3:3202495-3202514 None:intergenic 20.0%
!!! AAACATCATATTAACTTGTT+TGG + chr5_3:3202634-3202653 None:intergenic 20.0%
!!! ATGTTTATCTTCTTTTGATT+TGG - chr5_3:3202700-3202719 Msa0792100:intron 20.0%
!!! AAACTTTTTGAAATAGTATG+GGG + chr5_3:3202770-3202789 None:intergenic 20.0%
!!! CAAAACTTTTTGAAATAGTA+TGG + chr5_3:3202772-3202791 None:intergenic 20.0%
!!! CATACTATTTCAAAAAGTTT+TGG - chr5_3:3202770-3202789 Msa0792100:intron 20.0%
!!! AGTATCGAGTATTTATTTTA+TGG - chr5_3:3203107-3203126 Msa0792100:CDS 20.0%
!!! GTATCGAGTATTTATTTTAT+GGG - chr5_3:3203108-3203127 Msa0792100:CDS 20.0%
!! GTAAAAACAGTAATATTTGA+TGG + chr5_3:3203513-3203532 None:intergenic 20.0%
!!! ATTAAGAATTTATGCTGTTT+TGG - chr5_3:3204137-3204156 Msa0792100:intron 20.0%
!!! AATATTTTTGTTTCAAACAC+AGG + chr5_3:3204326-3204345 None:intergenic 20.0%
!! GAGATTATATAAGTTTGAAA+AGG + chr5_3:3204623-3204642 None:intergenic 20.0%
!! AAACTTATATAATCTCATGA+TGG - chr5_3:3204627-3204646 Msa0792100:intron 20.0%
!!! TTCAAGTCTTTTACAATAAA+GGG + chr5_3:3204760-3204779 None:intergenic 20.0%
!!! TTTCAAGTCTTTTACAATAA+AGG + chr5_3:3204761-3204780 None:intergenic 20.0%
!!! TAATTTCCTTTTTGTTAAGA+TGG - chr5_3:3204935-3204954 Msa0792100:intron 20.0%
!!! TAAGATTTTATTTTGGATCT+AGG - chr5_3:3205009-3205028 Msa0792100:intron 20.0%
!!! AAGATTTTATTTTGGATCTA+GGG - chr5_3:3205010-3205029 Msa0792100:intron 20.0%
!!! AATTATAGCTCTTTTTTACT+AGG - chr5_3:3205044-3205063 Msa0792100:intron 20.0%
!! GAAATTGTTAAAACAAAAGT+TGG - chr5_3:3205066-3205085 Msa0792100:intron 20.0%
!! AATTGTTAAAACAAAAGTTG+GGG - chr5_3:3205068-3205087 Msa0792100:intron 20.0%
!! ATTATTAATCATGACAAGTT+TGG - chr5_3:3205092-3205111 Msa0792100:intron 20.0%
!!! GAATATACTTTTATTTTGCA+TGG - chr5_3:3205129-3205148 Msa0792100:intron 20.0%
!! AACTAGTATCATGTATAATT+AGG - chr5_3:3205226-3205245 Msa0792100:CDS 20.0%
!! AAAAAAATCTTTATGCATTG+TGG + chr5_3:3205274-3205293 None:intergenic 20.0%
!! TATATAGTTGTATACCAATT+TGG + chr5_3:3205373-3205392 None:intergenic 20.0%
!!! TGATTTTATAACTTTTATGC+TGG - chr5_3:3205517-3205536 Msa0792100:CDS 20.0%
!!! GCATTAATTTAAGATAGAAA+TGG + chr5_3:3205892-3205911 None:intergenic 20.0%
!!! TAAACAGAAGTTAGATATTT+TGG + chr5_3:3206098-3206117 None:intergenic 20.0%
!! TCGAGAAATATTATGATTTA+GGG - chr5_3:3206256-3206275 Msa0792100:intron 20.0%
!! ACATTTAACTAAATTCTTTG+AGG + chr5_3:3206536-3206555 None:intergenic 20.0%
!! TTATCCATTACTTATAATGT+AGG - chr5_3:3207204-3207223 Msa0792100:intron 20.0%
!! TACATGTAAAATAAAATTCC+TGG + chr5_3:3207340-3207359 None:intergenic 20.0%
!!! AGGAATTTTATTTTACATGT+AGG - chr5_3:3207339-3207358 Msa0792100:intron 20.0%
!! AGTAAATAAAATACTAGCAA+AGG + chr5_3:3207632-3207651 None:intergenic 20.0%
!! TTAAGAAAAGTTAATCTCAA+AGG + chr5_3:3207815-3207834 None:intergenic 20.0%
!! GAGTAGTTTATTATAAGAAA+AGG - chr5_3:3208060-3208079 Msa0792100:intron 20.0%
!!! AAAGTATTTTTTCTCAAATG+CGG + chr5_3:3209232-3209251 None:intergenic 20.0%
!! TATGATATGATATACAAAAG+AGG + chr5_3:3209635-3209654 None:intergenic 20.0%
!! ATTACAATTAGATTGACTAT+TGG + chr5_3:3209663-3209682 None:intergenic 20.0%
! CGAAATGAAATGAAATGAAA+AGG + chr5_3:3201824-3201843 None:intergenic 25.0%
!! TTTTCGACTTTAATCTTTCT+TGG + chr5_3:3201908-3201927 None:intergenic 25.0%
! ACAAGCAAGTTTATGAAATA+TGG + chr5_3:3201988-3202007 None:intergenic 25.0%
!!! TCAATGTCATACTACTTTTA+AGG - chr5_3:3202023-3202042 Msa0792100:CDS 25.0%
!!! CAATGTCATACTACTTTTAA+GGG - chr5_3:3202024-3202043 Msa0792100:CDS 25.0%
!!! CTACTACTTTTTCATTTTTC+GGG - chr5_3:3202067-3202086 Msa0792100:intron 25.0%
! AAACAATCTCACAAAACTTA+TGG + chr5_3:3202405-3202424 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG - chr5_3:3202404-3202423 Msa0792100:intron 25.0%
!!! CATAAGCTATTTTATAGCAA+AGG + chr5_3:3202556-3202575 None:intergenic 25.0%
! ATAATGAGAACTATCTAACA+TGG + chr5_3:3202834-3202853 None:intergenic 25.0%
! CAATTATTGTTGCCTATATA+TGG - chr5_3:3203137-3203156 Msa0792100:intron 25.0%
! AAATAAACACATTCACAAAG+AGG + chr5_3:3203605-3203624 None:intergenic 25.0%
! TATGTCATATTATCCTTAGT+TGG - chr5_3:3203696-3203715 Msa0792100:intron 25.0%
! CAAAAAACACATTCATAAAG+AGG + chr5_3:3203736-3203755 None:intergenic 25.0%
! TAAATCGGAAAAACATAAAG+CGG - chr5_3:3204360-3204379 Msa0792100:CDS 25.0%
! ATGTATACAGAGAAAATGTA+AGG + chr5_3:3204482-3204501 None:intergenic 25.0%
! TACTTTCCATCTTAACAAAA+AGG + chr5_3:3204944-3204963 None:intergenic 25.0%
! AAGATGGAAAGTAAAGAAAA+AGG - chr5_3:3204951-3204970 Msa0792100:intron 25.0%
! AAGTATATTCTTCAATCCTA+GGG + chr5_3:3204980-3204999 None:intergenic 25.0%
! TAAGTATATTCTTCAATCCT+AGG + chr5_3:3204981-3205000 None:intergenic 25.0%
! AAAAGAGCTATAATTATGAG+AGG + chr5_3:3205039-3205058 None:intergenic 25.0%
!!! ATTTTGCATGGTTGTTTTTA+AGG - chr5_3:3205141-3205160 Msa0792100:intron 25.0%
!!! TTTTGCATGGTTGTTTTTAA+GGG - chr5_3:3205142-3205161 Msa0792100:intron 25.0%
!!! TGAACTATTTTTTAAGCTGT+AGG - chr5_3:3205307-3205326 Msa0792100:CDS 25.0%
! AGCTGAAAATCAAAATATGT+GGG + chr5_3:3205343-3205362 None:intergenic 25.0%
! GTATACAACTATATATGCAT+TGG - chr5_3:3205378-3205397 Msa0792100:intron 25.0%
!!! TATGCATTGGATTTACTTTT+AGG - chr5_3:3205391-3205410 Msa0792100:intron 25.0%
! TCATTCAATCAAACAATACA+CGG + chr5_3:3205455-3205474 None:intergenic 25.0%
! AAACAAAATATGATCGATGA+AGG + chr5_3:3205795-3205814 None:intergenic 25.0%
!!! ACATTCATTCCTGTTTTATT+TGG - chr5_3:3205939-3205958 Msa0792100:intron 25.0%
! GTATTAAATTAATACCGCAT+AGG + chr5_3:3206021-3206040 None:intergenic 25.0%
!!! GTTAGATATTTTGGCTATTA+AGG + chr5_3:3206089-3206108 None:intergenic 25.0%
! ACTTCTGTTTATGAATTTGT+AGG - chr5_3:3206107-3206126 Msa0792100:intron 25.0%
! CTTCTGTTTATGAATTTGTA+GGG - chr5_3:3206108-3206127 Msa0792100:intron 25.0%
! ACTGAATCATAAAAGAATTG+TGG + chr5_3:3206180-3206199 None:intergenic 25.0%
! CTCGAGAAATATTATGATTT+AGG - chr5_3:3206255-3206274 Msa0792100:intron 25.0%
! CGAGAAATATTATGATTTAG+GGG - chr5_3:3206257-3206276 Msa0792100:intron 25.0%
! TTATTTGTGAACTAACGAAA+TGG - chr5_3:3206561-3206580 Msa0792100:intron 25.0%
! AATGTTTCCAAAAACTGAAA+TGG + chr5_3:3206807-3206826 None:intergenic 25.0%
!!! GGCATTGTTTTATATTAGTA+TGG - chr5_3:3206908-3206927 Msa0792100:intron 25.0%
! AAAAAATAGACAGAAGGTTA+AGG + chr5_3:3207158-3207177 None:intergenic 25.0%
! TTGTCTGTGAAATTAAGAAA+TGG - chr5_3:3207313-3207332 Msa0792100:intron 25.0%
!! AAACTGCAAATGCAATTTTA+AGG - chr5_3:3207697-3207716 Msa0792100:intron 25.0%
!!! TGCAATTTTAAGGTTACTTT+CGG - chr5_3:3207707-3207726 Msa0792100:intron 25.0%
! AAAACTAAGTCTTGATTGAA+TGG - chr5_3:3207998-3208017 Msa0792100:intron 25.0%
! AAACTAAGTCTTGATTGAAT+GGG - chr5_3:3207999-3208018 Msa0792100:intron 25.0%
!! TTTCATTAGTAGACTTTTTG+TGG - chr5_3:3208029-3208048 Msa0792100:intron 25.0%
!!! TTTTAAGTGTTGTTTTACTC+TGG - chr5_3:3208125-3208144 Msa0792100:intron 25.0%
!! TTGACCATTAATGACTTTTA+GGG - chr5_3:3208295-3208314 Msa0792100:intron 25.0%
! CCTTGCTTATATATATTTCA+TGG + chr5_3:3208723-3208742 None:intergenic 25.0%
! CCATGAAATATATATAAGCA+AGG - chr5_3:3208720-3208739 Msa0792100:intron 25.0%
!!! TTTAGTTTTGGACCTAAATT+TGG + chr5_3:3208750-3208769 None:intergenic 25.0%
! TTTAGGTCCAAAACTAAAAA+AGG - chr5_3:3208752-3208771 Msa0792100:intron 25.0%
! AAAAAAAAAAAAGGACACCA+AGG - chr5_3:3208776-3208795 Msa0792100:intron 25.0%
! AAAAAAAAAAAGGACACCAA+GGG - chr5_3:3208777-3208796 Msa0792100:intron 25.0%
! AAAAGTGAGAATTTGAGAAA+TGG + chr5_3:3208942-3208961 None:intergenic 25.0%
! AGAATAGAAGATGTAGAAAT+TGG - chr5_3:3209081-3209100 Msa0792100:intron 25.0%
! GAATAGAAGATGTAGAAATT+GGG - chr5_3:3209082-3209101 Msa0792100:intron 25.0%
! AATAGAAGATGTAGAAATTG+GGG - chr5_3:3209083-3209102 Msa0792100:intron 25.0%
!!! TTTTAGGAATTGCCAAATAT+TGG - chr5_3:3209750-3209769 Msa0792100:five_prime_UTR 25.0%
! TTTAGGAATTGCCAAATATT+TGG - chr5_3:3209751-3209770 Msa0792100:five_prime_UTR 25.0%
AATTGATAAGAGGGAAAGAA+AGG - chr5_3:3201624-3201643 Msa0792100:three_prime_UTR 30.0%
AAATAAGCTGAGAAGAAGTA+TGG + chr5_3:3201765-3201784 None:intergenic 30.0%
ATACTTCTTCTCAGCTTATT+TGG - chr5_3:3201764-3201783 Msa0792100:three_prime_UTR 30.0%
TGAAATGAAATGAAAAGGGT+GGG + chr5_3:3201819-3201838 None:intergenic 30.0%
ATGAAATGAAATGAAAAGGG+TGG + chr5_3:3201820-3201839 None:intergenic 30.0%
ACTTTAATCTTTCTTGGCTT+GGG + chr5_3:3201902-3201921 None:intergenic 30.0%
! TGCGTCAATTTTTCATCATT+TGG - chr5_3:3201930-3201949 Msa0792100:CDS 30.0%
! GCGTCAATTTTTCATCATTT+GGG - chr5_3:3201931-3201950 Msa0792100:CDS 30.0%
! GATTCTTTTAAACTTCTCAC+AGG - chr5_3:3202089-3202108 Msa0792100:intron 30.0%
TTTAAACTTCTCACAGGAAT+TGG - chr5_3:3202095-3202114 Msa0792100:intron 30.0%
CACAACTCAAAAAGTCAAAT+TGG + chr5_3:3202161-3202180 None:intergenic 30.0%
AAGAATAATAATACCTGGGA+GGG + chr5_3:3202334-3202353 None:intergenic 30.0%
AAAGAATAATAATACCTGGG+AGG + chr5_3:3202335-3202354 None:intergenic 30.0%
TAAGATAAGCTGCTCAAATA+AGG + chr5_3:3202380-3202399 None:intergenic 30.0%
ATGTTTCTTTCTTCACTAAG+AGG - chr5_3:3202648-3202667 Msa0792100:intron 30.0%
TTGCAAATTGAGTTACAGTT+TGG - chr5_3:3202973-3202992 Msa0792100:intron 30.0%
TGCAAATTGAGTTACAGTTT+GGG - chr5_3:3202974-3202993 Msa0792100:intron 30.0%
TATTGTTGCCTATATATGGA+AGG - chr5_3:3203141-3203160 Msa0792100:intron 30.0%
TATCTTCAGGAAAAGGAAAA+GGG + chr5_3:3203274-3203293 None:intergenic 30.0%
TTATATATTGCCATGGAAAC+AGG - chr5_3:3203309-3203328 Msa0792100:intron 30.0%
!!! ACAGGTATGTGTTACTTTTA+TGG - chr5_3:3203327-3203346 Msa0792100:intron 30.0%
ACAAGTACACATATCAAAAG+GGG + chr5_3:3203433-3203452 None:intergenic 30.0%
CACAAGTACACATATCAAAA+GGG + chr5_3:3203434-3203453 None:intergenic 30.0%
ACACAAGTACACATATCAAA+AGG + chr5_3:3203435-3203454 None:intergenic 30.0%
AACAAACAAATATCCCGTAT+AGG - chr5_3:3203927-3203946 Msa0792100:intron 30.0%
AAATATCCCGTATAGGTTTA+TGG - chr5_3:3203934-3203953 Msa0792100:intron 30.0%
AATATCCCGTATAGGTTTAT+GGG - chr5_3:3203935-3203954 Msa0792100:intron 30.0%
TAGAACATTATTGCATCGTT+TGG - chr5_3:3204059-3204078 Msa0792100:intron 30.0%
AAATCGGAAAAACATAAAGC+GGG - chr5_3:3204361-3204380 Msa0792100:CDS 30.0%
!! TAATGTTCACTTTGCTTTTG+TGG - chr5_3:3204537-3204556 Msa0792100:intron 30.0%
!! AATGTTCACTTTGCTTTTGT+GGG - chr5_3:3204538-3204557 Msa0792100:intron 30.0%
TTGTGGACGTTTATAAAATC+CGG - chr5_3:3204653-3204672 Msa0792100:intron 30.0%
! TCTTTTACAATAAAGGGAGT+TGG + chr5_3:3204754-3204773 None:intergenic 30.0%
!!! TTTGCATGGTTGTTTTTAAG+GGG - chr5_3:3205143-3205162 Msa0792100:intron 30.0%
ATGATACTAGTTGAAACTCT+CGG + chr5_3:3205218-3205237 None:intergenic 30.0%
!!! ATTTTTTAAGCTGTAGGTGT+AGG - chr5_3:3205313-3205332 Msa0792100:CDS 30.0%
GAGCTGAAAATCAAAATATG+TGG + chr5_3:3205344-3205363 None:intergenic 30.0%
GTTTGATTGAATGAATGAAC+TGG - chr5_3:3205461-3205480 Msa0792100:CDS 30.0%
GTTATAAAATCACGCAAACT+AGG + chr5_3:3205509-3205528 None:intergenic 30.0%
! GTCTAGTATGTTTGTTAAGT+CGG - chr5_3:3205602-3205621 Msa0792100:intron 30.0%
TTCTCCCAATTAGGTTAAAA+TGG - chr5_3:3205640-3205659 Msa0792100:intron 30.0%
!! ACAGCCATTTTAACCTAATT+GGG + chr5_3:3205647-3205666 None:intergenic 30.0%
!! TACAGCCATTTTAACCTAAT+TGG + chr5_3:3205648-3205667 None:intergenic 30.0%
TATGAAATTGAACTGTGTTC+TGG - chr5_3:3205712-3205731 Msa0792100:intron 30.0%
!!! TTAATGCTTTTAAAGCGTAC+AGG - chr5_3:3205905-3205924 Msa0792100:intron 30.0%
AAAACAGGAATGAATGTCTT+CGG + chr5_3:3205936-3205955 None:intergenic 30.0%
AATCATAAAAGAATTGTGGC+CGG + chr5_3:3206176-3206195 None:intergenic 30.0%
AAGAACATAATTAAGTGAGC+AGG + chr5_3:3206344-3206363 None:intergenic 30.0%
TCTTGAGCAAGGTAAAATTA+TGG + chr5_3:3206669-3206688 None:intergenic 30.0%
! TCAACTTCCATTTCAGTTTT+TGG - chr5_3:3206797-3206816 Msa0792100:CDS 30.0%
! GATTTTGTTGCAGATATTGT+TGG + chr5_3:3207084-3207103 None:intergenic 30.0%
GGAAGAAAAAAATAGACAGA+AGG + chr5_3:3207164-3207183 None:intergenic 30.0%
TTGAAGAACTTTGCAATTTG+AGG + chr5_3:3207477-3207496 None:intergenic 30.0%
!!! TTTTAAGGTTACTTTCGGAA+TGG - chr5_3:3207712-3207731 Msa0792100:intron 30.0%
! TTTAAGGTTACTTTCGGAAT+GGG - chr5_3:3207713-3207732 Msa0792100:intron 30.0%
ACTTGTGAAAAAATCCTTGT+AGG + chr5_3:3207934-3207953 None:intergenic 30.0%
!!! ACTTAGTTTTTAGAGTAGTG+GGG + chr5_3:3207988-3208007 None:intergenic 30.0%
!!! GACTTAGTTTTTAGAGTAGT+GGG + chr5_3:3207989-3208008 None:intergenic 30.0%
!!! AGACTTAGTTTTTAGAGTAG+TGG + chr5_3:3207990-3208009 None:intergenic 30.0%
TAACTATGATCTGTTGATCA+GGG + chr5_3:3208091-3208110 None:intergenic 30.0%
ATAACTATGATCTGTTGATC+AGG + chr5_3:3208092-3208111 None:intergenic 30.0%
ACATAAAGCTAACAAAGACA+TGG + chr5_3:3208157-3208176 None:intergenic 30.0%
GAAGTTAAAATTGACAAGTG+TGG - chr5_3:3208224-3208243 Msa0792100:intron 30.0%
! CTTGACCATTAATGACTTTT+AGG - chr5_3:3208294-3208313 Msa0792100:intron 30.0%
AAGCTCAAATAGAGAAAGTT+GGG - chr5_3:3208357-3208376 Msa0792100:intron 30.0%
!! GTTAGGAGTAATTAGTCTTT+AGG + chr5_3:3208601-3208620 None:intergenic 30.0%
CACTTAAGTAGGTTAATGAA+GGG + chr5_3:3208674-3208693 None:intergenic 30.0%
TCACTTAAGTAGGTTAATGA+AGG + chr5_3:3208675-3208694 None:intergenic 30.0%
GAATAGGTAATATTGACCAA+GGG - chr5_3:3208799-3208818 Msa0792100:intron 30.0%
AAGATGGTAAATTGACATCA+TGG - chr5_3:3208823-3208842 Msa0792100:intron 30.0%
TTGACATCATGGCTATAAAT+AGG - chr5_3:3208834-3208853 Msa0792100:intron 30.0%
ATCAGAGTTCACAAAATTTG+CGG - chr5_3:3208874-3208893 Msa0792100:intron 30.0%
ATTTGAGAAATGGTGATTTG+TGG + chr5_3:3208932-3208951 None:intergenic 30.0%
!! ACTTGTTTGTGGTTTTACTA+CGG + chr5_3:3208978-3208997 None:intergenic 30.0%
CTGAAAATTCTACTTGTTTG+TGG + chr5_3:3208989-3209008 None:intergenic 30.0%
TAAATAAGCTTCTTCACACT+TGG + chr5_3:3209026-3209045 None:intergenic 30.0%
AGAAGCTTATTTACTGAAGA+TGG - chr5_3:3209033-3209052 Msa0792100:intron 30.0%
ATAGAAGATGTAGAAATTGG+GGG - chr5_3:3209084-3209103 Msa0792100:intron 30.0%
! ATTTGCCTGCTAGTTTATAT+AGG - chr5_3:3209322-3209341 Msa0792100:five_prime_UTR 30.0%
! TTTGCCTGCTAGTTTATATA+GGG - chr5_3:3209323-3209342 Msa0792100:five_prime_UTR 30.0%
TAGCAATAAATACACATGAG+TGG + chr5_3:3209363-3209382 None:intergenic 30.0%
! TTCTTCTTTTTACCCTTCTT+CGG + chr5_3:3209485-3209504 None:intergenic 30.0%
GAAGAAGAAAAAAGCTGAAA+CGG - chr5_3:3209499-3209518 Msa0792100:intron 30.0%
AAAACACAAATTTCGTGTGT+AGG - chr5_3:3209689-3209708 Msa0792100:five_prime_UTR 30.0%
!! AGCATGACTAACTCATTTTT+AGG - chr5_3:3209734-3209753 Msa0792100:five_prime_UTR 30.0%
TAATGATAACAGCGAAATGA+AGG + chr5_3:3209787-3209806 None:intergenic 30.0%
! GAACATGACTAACTCATTTT+AGG - chr5_3:3209815-3209834 Msa0792100:five_prime_UTR 30.0%
TGGTGTTCTTGGAATTGAAT+TGG - chr5_3:3201665-3201684 Msa0792100:three_prime_UTR 35.0%
GACTTTAATCTTTCTTGGCT+TGG + chr5_3:3201903-3201922 None:intergenic 35.0%
GTAGTAGTTTCAGATCCAAA+TGG + chr5_3:3202054-3202073 None:intergenic 35.0%
AGTTGTGAAGAAAGAGAGAT+TGG - chr5_3:3202174-3202193 Msa0792100:intron 35.0%
GTATCTATCTTATAGCCACT+TGG + chr5_3:3202276-3202295 None:intergenic 35.0%
TAAGCTATATTGGAGGACTT+AGG + chr5_3:3202485-3202504 None:intergenic 35.0%
! TGTGTTTTGTGTATGCTGTA+AGG + chr5_3:3202516-3202535 None:intergenic 35.0%
TTCTTCACTAAGAGGTCAAT+AGG - chr5_3:3202656-3202675 Msa0792100:intron 35.0%
TCTTCACTAAGAGGTCAATA+GGG - chr5_3:3202657-3202676 Msa0792100:intron 35.0%
! CATGGTTCTTTGAAGATTGT+TGG + chr5_3:3202816-3202835 None:intergenic 35.0%
ACATGTTGAGACTTGAGAAA+TGG + chr5_3:3202939-3202958 None:intergenic 35.0%
TTATACTTTGCCACATACAC+AGG - chr5_3:3203000-3203019 Msa0792100:intron 35.0%
TATACTTTGCCACATACACA+GGG - chr5_3:3203001-3203020 Msa0792100:intron 35.0%
GTGATGTACCTTCCATATAT+AGG + chr5_3:3203152-3203171 None:intergenic 35.0%
GAGATAATGACTACACTTCA+AGG + chr5_3:3203252-3203271 None:intergenic 35.0%
GTATCTTCAGGAAAAGGAAA+AGG + chr5_3:3203275-3203294 None:intergenic 35.0%
!! AGAGAAGTATCTTCAGGAAA+AGG + chr5_3:3203281-3203300 None:intergenic 35.0%
CCATGGCAATATATAACACA+AGG + chr5_3:3203305-3203324 None:intergenic 35.0%
CCTTGTGTTATATATTGCCA+TGG - chr5_3:3203302-3203321 Msa0792100:intron 35.0%
TAATTCAGAACCAATAGCAG+TGG + chr5_3:3203353-3203372 None:intergenic 35.0%
ACTTGTGTTAAATGATGCAG+TGG - chr5_3:3203447-3203466 Msa0792100:intron 35.0%
TTAAATGATGCAGTGGATGT+AGG - chr5_3:3203454-3203473 Msa0792100:intron 35.0%
TAAATGATGCAGTGGATGTA+GGG - chr5_3:3203455-3203474 Msa0792100:intron 35.0%
!! TGTTTTTACCCTTGACTTCT+CGG - chr5_3:3203524-3203543 Msa0792100:intron 35.0%
!! TGTTTTTACCCTTGTCTTCT+CGG - chr5_3:3203650-3203669 Msa0792100:intron 35.0%
AAGTTACTTCAAGCCAACTA+AGG + chr5_3:3203712-3203731 None:intergenic 35.0%
TCTTGCACGTGAAATTGTAA+CGG + chr5_3:3203829-3203848 None:intergenic 35.0%
ATCATCTTTCTACCACACAA+AGG + chr5_3:3203877-3203896 None:intergenic 35.0%
GAAAGATGATCTGAAGATTG+TGG - chr5_3:3203887-3203906 Msa0792100:intron 35.0%
ATATCCCGTATAGGTTTATG+GGG - chr5_3:3203936-3203955 Msa0792100:intron 35.0%
AAAACTTATCCCACTAAGTG+GGG + chr5_3:3204098-3204117 None:intergenic 35.0%
CAAAACTTATCCCACTAAGT+GGG + chr5_3:3204099-3204118 None:intergenic 35.0%
GTATCTCACCAAGAAAAGAA+AGG - chr5_3:3204180-3204199 Msa0792100:CDS 35.0%
! ATTGAGGTCCTTTCTTTTCT+TGG + chr5_3:3204191-3204210 None:intergenic 35.0%
AAGAAAAGAAAGGACCTCAA+TGG - chr5_3:3204190-3204209 Msa0792100:CDS 35.0%
AGAAAAGAAAGGACCTCAAT+GGG - chr5_3:3204191-3204210 Msa0792100:CDS 35.0%
TATGTGAAAATCACCCATTG+AGG + chr5_3:3204207-3204226 None:intergenic 35.0%
! TCCACTAAAGTTTTCTGTCA+AGG - chr5_3:3204242-3204261 Msa0792100:intron 35.0%
! CCACTAAAGTTTTCTGTCAA+GGG - chr5_3:3204243-3204262 Msa0792100:intron 35.0%
ATACCATTCCAGCAATAGAA+GGG + chr5_3:3204591-3204610 None:intergenic 35.0%
AATACCATTCCAGCAATAGA+AGG + chr5_3:3204592-3204611 None:intergenic 35.0%
TTCTATTGCTGGAATGGTAT+TGG - chr5_3:3204591-3204610 Msa0792100:intron 35.0%
CATTCTTCATAAGTTGTTGC+TGG - chr5_3:3204841-3204860 Msa0792100:intron 35.0%
GTAAAGAAAAAGGAATCCCT+AGG - chr5_3:3204961-3204980 Msa0792100:intron 35.0%
ATGTATAATTAGGCCAAAGC+TGG - chr5_3:3205236-3205255 Msa0792100:CDS 35.0%
TGTATAATTAGGCCAAAGCT+GGG - chr5_3:3205237-3205256 Msa0792100:CDS 35.0%
CAATTCTAACTGACAGCTAT+AGG + chr5_3:3205583-3205602 None:intergenic 35.0%
! TGTTGCATTTTCTCCCAATT+AGG - chr5_3:3205631-3205650 Msa0792100:intron 35.0%
AAATGGCTGTACAATACATG+CGG - chr5_3:3205657-3205676 Msa0792100:intron 35.0%
ATGACGAATCTAACCACAAT+AGG - chr5_3:3205824-3205843 Msa0792100:intron 35.0%
!! AACCACAATAGGCTTTATTC+AGG - chr5_3:3205835-3205854 Msa0792100:intron 35.0%
AACCTGAATAAAGCCTATTG+TGG + chr5_3:3205840-3205859 None:intergenic 35.0%
CTTGCATGTCCAAATAAAAC+AGG + chr5_3:3205951-3205970 None:intergenic 35.0%
ATCATAAAAGAATTGTGGCC+GGG + chr5_3:3206175-3206194 None:intergenic 35.0%
GAGGACATTGTAGAAGAAAA+TGG + chr5_3:3206205-3206224 None:intergenic 35.0%
! TTTTCAGCAATAGAGACTTG+AGG + chr5_3:3206234-3206253 None:intergenic 35.0%
! GATTTAGGGGATTTGAAACT+TGG - chr5_3:3206270-3206289 Msa0792100:intron 35.0%
TGAATAACTAGTAGTGTGGA+GGG + chr5_3:3206407-3206426 None:intergenic 35.0%
! AACTAAATTCTTTGAGGACC+AGG + chr5_3:3206530-3206549 None:intergenic 35.0%
! CATTTTGTTGATCTTGAGCA+AGG + chr5_3:3206680-3206699 None:intergenic 35.0%
CTTGCTCAAGATCAACAAAA+TGG - chr5_3:3206678-3206697 Msa0792100:intron 35.0%
TGAAACCTCTAATCATGTCT+GGG - chr5_3:3206744-3206763 Msa0792100:intron 35.0%
GGTGCCTACATTATAAGTAA+TGG + chr5_3:3207211-3207230 None:intergenic 35.0%
GTAGTTTCATCTTCAAGCAA+GGG + chr5_3:3207232-3207251 None:intergenic 35.0%
TGTAGTTTCATCTTCAAGCA+AGG + chr5_3:3207233-3207252 None:intergenic 35.0%
GAAACTACAGATGACAATGA+TGG - chr5_3:3207244-3207263 Msa0792100:intron 35.0%
! ACAGATGACAATGATGGAAT+TGG - chr5_3:3207250-3207269 Msa0792100:intron 35.0%
GTGAAATTAAGAAATGGTCC+AGG - chr5_3:3207319-3207338 Msa0792100:intron 35.0%
!! CACTTTAAAATCTACACGAG+AGG - chr5_3:3207386-3207405 Msa0792100:intron 35.0%
ATGCTAGTAACACACTCTTA+TGG - chr5_3:3207410-3207429 Msa0792100:intron 35.0%
! CACTCTTATGGACATTCTTT+TGG - chr5_3:3207422-3207441 Msa0792100:intron 35.0%
! AATACTAGCAAAGGTACAGT+AGG + chr5_3:3207623-3207642 None:intergenic 35.0%
!! TTGTTAGCTTTATGTAAGCC+TGG - chr5_3:3208162-3208181 Msa0792100:CDS 35.0%
!!! TGTCGTTGATGACATCATTT+TGG - chr5_3:3208198-3208217 Msa0792100:CDS 35.0%
TAATGGTCAAGTTCAAGTGA+AGG + chr5_3:3208285-3208304 None:intergenic 35.0%
CTTGCCCTAAAAGTCATTAA+TGG + chr5_3:3208302-3208321 None:intergenic 35.0%
ATGAGCAACAATCTTCAATC+TGG + chr5_3:3208333-3208352 None:intergenic 35.0%
CAAGCTCAAATAGAGAAAGT+TGG - chr5_3:3208356-3208375 Msa0792100:intron 35.0%
AGCTCAAATAGAGAAAGTTG+GGG - chr5_3:3208358-3208377 Msa0792100:intron 35.0%
TTGAGTTTCTACAAAGGGTA+AGG + chr5_3:3208521-3208540 None:intergenic 35.0%
TTACCCTTTGTAGAAACTCA+AGG - chr5_3:3208520-3208539 Msa0792100:intron 35.0%
TCTCCTTGAGTTTCTACAAA+GGG + chr5_3:3208526-3208545 None:intergenic 35.0%
TTCTCCTTGAGTTTCTACAA+AGG + chr5_3:3208527-3208546 None:intergenic 35.0%
AACCTACTTAAGTGAGTTAG+AGG - chr5_3:3208680-3208699 Msa0792100:intron 35.0%
!! GTTTTGGACCTAAATTTGGT+TGG + chr5_3:3208746-3208765 None:intergenic 35.0%
GTCAATATTACCTATTCCCT+TGG + chr5_3:3208796-3208815 None:intergenic 35.0%
GGAATAGGTAATATTGACCA+AGG - chr5_3:3208798-3208817 Msa0792100:intron 35.0%
AATATTGACCAAGGGTAAGA+TGG - chr5_3:3208807-3208826 Msa0792100:intron 35.0%
TCAATTTACCATCTTACCCT+TGG + chr5_3:3208818-3208837 None:intergenic 35.0%
GCTATAAATAGGAGATAGCA+AGG - chr5_3:3208845-3208864 Msa0792100:intron 35.0%
TACTGAAGATGGAAGATCAA+CGG - chr5_3:3209044-3209063 Msa0792100:intron 35.0%
!! TAACGCCTCATTTTTAGAGA+GGG + chr5_3:3209260-3209279 None:intergenic 35.0%
!! ATAACGCCTCATTTTTAGAG+AGG + chr5_3:3209261-3209280 None:intergenic 35.0%
AGAACCCTATATAAACTAGC+AGG + chr5_3:3209330-3209349 None:intergenic 35.0%
TTCTCTTTCATACTTCGCAA+AGG + chr5_3:3209431-3209450 None:intergenic 35.0%
TTCTCAAATCTGTCACTCTT+TGG + chr5_3:3209536-3209555 None:intergenic 35.0%
!! AGATGACTTGTTTCTTCGAT+GGG + chr5_3:3209609-3209628 None:intergenic 35.0%
!! AAGATGACTTGTTTCTTCGA+TGG + chr5_3:3209610-3209629 None:intergenic 35.0%
!! GCCAAATATTGGTTTCTGAT+TGG - chr5_3:3209761-3209780 Msa0792100:five_prime_UTR 35.0%
GCCAATCAGAAACCAATATT+TGG + chr5_3:3209765-3209784 None:intergenic 35.0%
! GAGAAGAAGTATGGTTAGAG+AGG + chr5_3:3201756-3201775 None:intergenic 40.0%
CTTCTTCTCAGCTTATTTGG+TGG - chr5_3:3201767-3201786 Msa0792100:three_prime_UTR 40.0%
!! ACTTTTAAGGGAACGCCATT+TGG - chr5_3:3202036-3202055 Msa0792100:CDS 40.0%
ATTCATTTCATGACGCCAAG+TGG - chr5_3:3202258-3202277 Msa0792100:intron 40.0%
TACTGTGCTCAAACTGAACA+TGG - chr5_3:3202738-3202757 Msa0792100:intron 40.0%
GACTTGAGAAATGGATGTTG+AGG + chr5_3:3202930-3202949 None:intergenic 40.0%
! TTTTCCCACAGATACTGATC+CGG + chr5_3:3203038-3203057 None:intergenic 40.0%
GAAAAGGAATTCTCTCTTGC+TGG - chr5_3:3203053-3203072 Msa0792100:CDS 40.0%
GCAGTACATACGCAAACAAT+TGG + chr5_3:3203179-3203198 None:intergenic 40.0%
!! CAAGGAAGAGAAGTATCTTC+AGG + chr5_3:3203287-3203306 None:intergenic 40.0%
GTAACACATACCTGTTTCCA+TGG + chr5_3:3203322-3203341 None:intergenic 40.0%
! ACTTTTATGGCCACTGCTAT+TGG - chr5_3:3203340-3203359 Msa0792100:intron 40.0%
! GTTTTTACCCTTGACTTCTC+GGG - chr5_3:3203525-3203544 Msa0792100:intron 40.0%
! TTTTTACCCTTGACTTCTCG+GGG - chr5_3:3203526-3203545 Msa0792100:intron 40.0%
! GTTTTTACCCTTGTCTTCTC+GGG - chr5_3:3203651-3203670 Msa0792100:intron 40.0%
! TTTTTACCCTTGTCTTCTCG+GGG - chr5_3:3203652-3203671 Msa0792100:intron 40.0%
CACACAAAGGAATGGTCAAA+AGG + chr5_3:3203864-3203883 None:intergenic 40.0%
! CTTTTGACCATTCCTTTGTG+TGG - chr5_3:3203862-3203881 Msa0792100:intron 40.0%
CTTTCTACCACACAAAGGAA+TGG + chr5_3:3203872-3203891 None:intergenic 40.0%
TATCCCGTATAGGTTTATGG+GGG - chr5_3:3203937-3203956 Msa0792100:intron 40.0%
CCAAAACTTATCCCACTAAG+TGG + chr5_3:3204100-3204119 None:intergenic 40.0%
! CCACTTAGTGGGATAAGTTT+TGG - chr5_3:3204097-3204116 Msa0792100:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG - chr5_3:3204100-3204119 Msa0792100:intron 40.0%
CCCTTGACAGAAAACTTTAG+TGG + chr5_3:3204246-3204265 None:intergenic 40.0%
TTTCTCTCCATGCATCTTTG+TGG - chr5_3:3204281-3204300 Msa0792100:intron 40.0%
! GTTTTGTCCACAAAGATGCA+TGG + chr5_3:3204291-3204310 None:intergenic 40.0%
CTTTGTGGACAAAACTGTTG+AGG - chr5_3:3204296-3204315 Msa0792100:intron 40.0%
! GTGGGATTTAGCCTTCTTTA+TGG - chr5_3:3204556-3204575 Msa0792100:intron 40.0%
! TAATCTCATGATGGAGCTTG+TGG - chr5_3:3204636-3204655 Msa0792100:intron 40.0%
TAAAGGGAGTTGGCAATACT+TGG + chr5_3:3204744-3204763 None:intergenic 40.0%
CATAAGTTGTTGCTGGAATC+TGG - chr5_3:3204848-3204867 Msa0792100:intron 40.0%
! TATTCTAGCCTCTAGCTTGT+AGG - chr5_3:3204883-3204902 Msa0792100:intron 40.0%
!! TGTTTTTAAGGGGTTGTCAC+AGG - chr5_3:3205153-3205172 Msa0792100:intron 40.0%
GTAGTTGAAATTCCCAGCTT+TGG + chr5_3:3205252-3205271 None:intergenic 40.0%
!!! CTGGTTACTTTTGAGCAACA+TGG - chr5_3:3205536-3205555 Msa0792100:intron 40.0%
TCTCATCTCAGAATCCTATG+CGG - chr5_3:3206004-3206023 Msa0792100:intron 40.0%
GTTAAATACCTCATCCACAC+CGG + chr5_3:3206298-3206317 None:intergenic 40.0%
CTGAATAACTAGTAGTGTGG+AGG + chr5_3:3206408-3206427 None:intergenic 40.0%
GCACTGAATAACTAGTAGTG+TGG + chr5_3:3206411-3206430 None:intergenic 40.0%
TAGAGGTTTCAGGCAAGTTA+AGG + chr5_3:3206735-3206754 None:intergenic 40.0%
CAGACATGATTAGAGGTTTC+AGG + chr5_3:3206745-3206764 None:intergenic 40.0%
CTGAAACCTCTAATCATGTC+TGG - chr5_3:3206743-3206762 Msa0792100:intron 40.0%
GAAACCTCTAATCATGTCTG+GGG - chr5_3:3206745-3206764 Msa0792100:intron 40.0%
AAAGATAACCTGCACACTTG+CGG + chr5_3:3207287-3207306 None:intergenic 40.0%
TCAATGTGTAGGAGGAATGT+TGG + chr5_3:3207572-3207591 None:intergenic 40.0%
CATTCCTCCTACACATTGAA+CGG - chr5_3:3207573-3207592 Msa0792100:intron 40.0%
!! AAAAGCACCGTTCAATGTGT+AGG + chr5_3:3207583-3207602 None:intergenic 40.0%
GATAGACAAAGTTCGAAGAG+TGG - chr5_3:3207755-3207774 Msa0792100:intron 40.0%
AACAATTATGTGCGCCTACA+AGG - chr5_3:3207917-3207936 Msa0792100:CDS 40.0%
ATCAACGACATAAGAAAGCC+AGG + chr5_3:3208188-3208207 None:intergenic 40.0%
!!! GACTTTTAGGGCAAGCTAAA+TGG - chr5_3:3208307-3208326 Msa0792100:intron 40.0%
AGGTGAAGATTGGGAAAATG+TGG + chr5_3:3208501-3208520 None:intergenic 40.0%
CAAAGGGTAAGGTGAAGATT+GGG + chr5_3:3208510-3208529 None:intergenic 40.0%
ACAAAGGGTAAGGTGAAGAT+TGG + chr5_3:3208511-3208530 None:intergenic 40.0%
CTCCTCTAACTCACTTAAGT+AGG + chr5_3:3208685-3208704 None:intergenic 40.0%
AAGCAAGGCCAACCAAATTT+AGG - chr5_3:3208735-3208754 Msa0792100:intron 40.0%
AAAAAGGACACCAAGGGAAT+AGG - chr5_3:3208783-3208802 Msa0792100:intron 40.0%
AAGCTTCTTCACACTTGGAA+TGG + chr5_3:3209021-3209040 None:intergenic 40.0%
AGATGTAGAAATTGGGGGAA+AGG - chr5_3:3209089-3209108 Msa0792100:intron 40.0%
! AAGCTCCCTCTCTAAAAATG+AGG - chr5_3:3209252-3209271 Msa0792100:five_prime_UTR 40.0%
GTCATGTCAGAATACTGTGA+AGG - chr5_3:3209394-3209413 Msa0792100:intron 40.0%
AGATGAAAAGAAGCCGAAGA+AGG - chr5_3:3209469-3209488 Msa0792100:intron 40.0%
GATGAAAAGAAGCCGAAGAA+GGG - chr5_3:3209470-3209489 Msa0792100:intron 40.0%
! TTGCGGCTTTGTCTTCTTAA+GGG - chr5_3:3209578-3209597 Msa0792100:intron 40.0%
! CTTCTCAGCTTATTTGGTGG+TGG - chr5_3:3201770-3201789 Msa0792100:three_prime_UTR 45.0%
TGGTAGCTTAGCTCAGACTT+TGG - chr5_3:3201793-3201812 Msa0792100:three_prime_UTR 45.0%
GGCTTGGGAACAGACAAAAA+AGG + chr5_3:3201887-3201906 None:intergenic 45.0%
ATAACCCGGATCAGTATCTG+TGG - chr5_3:3203030-3203049 Msa0792100:CDS 45.0%
TAACCCGGATCAGTATCTGT+GGG - chr5_3:3203031-3203050 Msa0792100:CDS 45.0%
TTTCCCACAGATACTGATCC+GGG + chr5_3:3203037-3203056 None:intergenic 45.0%
GGATCAGTATCTGTGGGAAA+AGG - chr5_3:3203037-3203056 Msa0792100:CDS 45.0%
TTGCTGGTAGAACCTACCAA+AGG - chr5_3:3203069-3203088 Msa0792100:CDS 45.0%
CTCTAAATCCTGCCTTTGGT+AGG + chr5_3:3203084-3203103 None:intergenic 45.0%
CTACCAAAGGCAGGATTTAG+AGG - chr5_3:3203082-3203101 Msa0792100:CDS 45.0%
TTGCCTCTAAATCCTGCCTT+TGG + chr5_3:3203088-3203107 None:intergenic 45.0%
ACACTTCAAGGTATAGCCTC+TGG + chr5_3:3203240-3203259 None:intergenic 45.0%
GAGAATTACAGCCGCTTCAT+TGG + chr5_3:3203487-3203506 None:intergenic 45.0%
AACTTACTTCGTGCCAACCA+AGG + chr5_3:3203581-3203600 None:intergenic 45.0%
!! AGATTGTGGTGTCGCATTTG+AGG - chr5_3:3203901-3203920 Msa0792100:intron 45.0%
ACCTCCCCCATAAACCTATA+CGG + chr5_3:3203944-3203963 None:intergenic 45.0%
TCCAGCAATAGAAGGGTCTT+CGG + chr5_3:3204584-3204603 None:intergenic 45.0%
AGACCCTTCTATTGCTGGAA+TGG - chr5_3:3204585-3204604 Msa0792100:intron 45.0%
AATCCGGCTTCCAAAGTTCA+CGG - chr5_3:3204669-3204688 Msa0792100:intron 45.0%
!! AGAGAGAGTACCGTGAACTT+TGG + chr5_3:3204682-3204701 None:intergenic 45.0%
CAATACTTGGCATCCACACA+GGG + chr5_3:3204731-3204750 None:intergenic 45.0%
TTCAGCTCGACTGTCCAAAT+TGG - chr5_3:3205356-3205375 Msa0792100:intron 45.0%
GAGATGAGATCAGAGTGATG+CGG + chr5_3:3205993-3206012 None:intergenic 45.0%
ATAAAAGAATTGTGGCCGGG+AGG + chr5_3:3206172-3206191 None:intergenic 45.0%
CAATAGAGACTTGAGGAGGA+CGG + chr5_3:3206227-3206246 None:intergenic 45.0%
TCAGCAATAGAGACTTGAGG+AGG + chr5_3:3206231-3206250 None:intergenic 45.0%
! GGGGATTTGAAACTTGGTTC+CGG - chr5_3:3206276-3206295 Msa0792100:intron 45.0%
! TTTGAAACTTGGTTCCGGTG+TGG - chr5_3:3206281-3206300 Msa0792100:intron 45.0%
GTTTCAGGCAAGTTAAGGCT+AGG + chr5_3:3206730-3206749 None:intergenic 45.0%
ACGAGATTCTCTCTAGTCTG+CGG - chr5_3:3207019-3207038 Msa0792100:intron 45.0%
AAAGTTCGAAGAGTGGCTAG+TGG - chr5_3:3207762-3207781 Msa0792100:intron 45.0%
CAAATAGAGAAAGTTGGGGC+AGG - chr5_3:3208362-3208381 Msa0792100:CDS 45.0%
TGCTGATGATAAGCTCTCTC+AGG - chr5_3:3208432-3208451 Msa0792100:intron 45.0%
! ATGGTGATTTGTGGCGTGAA+GGG + chr5_3:3208923-3208942 None:intergenic 45.0%
! AATGGTGATTTGTGGCGTGA+AGG + chr5_3:3208924-3208943 None:intergenic 45.0%
TGAAGATGGAAGATCAACGG+AGG - chr5_3:3209047-3209066 Msa0792100:intron 45.0%
ATGGAAGATCAACGGAGGTT+AGG - chr5_3:3209052-3209071 Msa0792100:intron 45.0%
TGGAAGATCAACGGAGGTTA+GGG - chr5_3:3209053-3209072 Msa0792100:intron 45.0%
GAGTGACAGATTTGAGAAGC+TGG - chr5_3:3209538-3209557 Msa0792100:intron 45.0%
TGACAGATTTGAGAAGCTGG+AGG - chr5_3:3209541-3209560 Msa0792100:intron 45.0%
! CTTGCGGCTTTGTCTTCTTA+AGG - chr5_3:3209577-3209596 Msa0792100:intron 45.0%
!!! TTTTTAATCATTTTATAAAT+CGG - chr5_3:3204345-3204364 Msa0792100:CDS 5.0%
!!! ATAAAGATTTTTTTTTTTTT+TGG - chr5_3:3205280-3205299 Msa0792100:CDS 5.0%
!!! TAAAGATTTTTTTTTTTTTT+GGG - chr5_3:3205281-3205300 Msa0792100:CDS 5.0%
AGAGGGAAAGAAAGGACAGC+TGG - chr5_3:3201632-3201651 Msa0792100:three_prime_UTR 50.0%
AAAGAAAGGACAGCTGGCTG+AGG - chr5_3:3201638-3201657 Msa0792100:three_prime_UTR 50.0%
!! GCTGAGGTGTTTGGTGTTCT+TGG - chr5_3:3201654-3201673 Msa0792100:three_prime_UTR 50.0%
!! CTCAGCTTATTTGGTGGTGG+TGG - chr5_3:3201773-3201792 Msa0792100:three_prime_UTR 50.0%
ATTTCGTTATTCGCCCTCCC+AGG - chr5_3:3202318-3202337 Msa0792100:intron 50.0%
ACTTTGCCACATACACAGGG+CGG - chr5_3:3203004-3203023 Msa0792100:intron 50.0%
TATAGTCCGCCCTGTGTATG+TGG + chr5_3:3203013-3203032 None:intergenic 50.0%
TGGTAGAACCTACCAAAGGC+AGG - chr5_3:3203073-3203092 Msa0792100:CDS 50.0%
TAGGGCAGATGCCAATGAAG+CGG - chr5_3:3203473-3203492 Msa0792100:intron 50.0%
GATGGAGACTATGTCAGCCT+TGG - chr5_3:3203561-3203580 Msa0792100:intron 50.0%
GAGACTATGTCAGCCTTGGT+TGG - chr5_3:3203565-3203584 Msa0792100:intron 50.0%
CCTCCCCCATAAACCTATAC+GGG + chr5_3:3203943-3203962 None:intergenic 50.0%
AGGTTTATGGGGGAGGTCAA+TGG - chr5_3:3203947-3203966 Msa0792100:intron 50.0%
GGTTTATGGGGGAGGTCAAT+GGG - chr5_3:3203948-3203967 Msa0792100:intron 50.0%
ATGCAACCAACCCCACTTAG+TGG - chr5_3:3204085-3204104 Msa0792100:intron 50.0%
TGCAACCAACCCCACTTAGT+GGG - chr5_3:3204086-3204105 Msa0792100:intron 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr5_3:3204094-3204113 None:intergenic 50.0%
GGTCTTCGGCTCCATAAAGA+AGG + chr5_3:3204570-3204589 None:intergenic 50.0%
! GTACCGTGAACTTTGGAAGC+CGG + chr5_3:3204675-3204694 None:intergenic 50.0%
GCAATACTTGGCATCCACAC+AGG + chr5_3:3204732-3204751 None:intergenic 50.0%
! AGCCTCTAGCTTGTAGGACT+TGG - chr5_3:3204889-3204908 Msa0792100:intron 50.0%
CACCAAGTCCTACAAGCTAG+AGG + chr5_3:3204894-3204913 None:intergenic 50.0%
TGGCTGTACAATACATGCGG+CGG - chr5_3:3205660-3205679 Msa0792100:intron 50.0%
ATGGCGACCATAATTCCTCC+CGG - chr5_3:3206154-3206173 Msa0792100:intron 50.0%
ATTGTGGCCGGGAGGAATTA+TGG + chr5_3:3206164-3206183 None:intergenic 50.0%
AGCTGCACTTATGAGAAGCC+TGG - chr5_3:3206509-3206528 Msa0792100:intron 50.0%
ACCTCTAATCATGTCTGGGG+CGG - chr5_3:3206748-3206767 Msa0792100:intron 50.0%
CTCCCCTGACTGATGTAGTA+GGG - chr5_3:3207130-3207149 Msa0792100:intron 50.0%
CACCCTACTACATCAGTCAG+GGG + chr5_3:3207135-3207154 None:intergenic 50.0%
GCACCCTACTACATCAGTCA+GGG + chr5_3:3207136-3207155 None:intergenic 50.0%
AGCACCGTTCAATGTGTAGG+AGG + chr5_3:3207580-3207599 None:intergenic 50.0%
! AGCTTTATGTAAGCCTGGCC+TGG - chr5_3:3208167-3208186 Msa0792100:CDS 50.0%
TGGGGCAGGTGTTCTTCATT+AGG - chr5_3:3208376-3208395 Msa0792100:CDS 50.0%
GGCAGGTGTTCTTCATTAGG+AGG - chr5_3:3208379-3208398 Msa0792100:CDS 50.0%
! TGGTGATTTGTGGCGTGAAG+GGG + chr5_3:3208922-3208941 None:intergenic 50.0%
!! ACACAGGGCGGACTATAACC+CGG - chr5_3:3203016-3203035 Msa0792100:CDS 55.0%
GTGCAGCTCAAGAATGCCAG+AGG - chr5_3:3203221-3203240 Msa0792100:intron 55.0%
TCGGGGTCAGGCTTATCTGA+TGG - chr5_3:3203543-3203562 Msa0792100:intron 55.0%
TCGGGGTCAGGCTTATCTGA+TGG - chr5_3:3203543-3203562 Msa0792100:intron 55.0%
CCCGTATAGGTTTATGGGGG+AGG - chr5_3:3203940-3203959 Msa0792100:intron 55.0%
GGTCAATGGGCGCAGTTACT+AGG - chr5_3:3203961-3203980 Msa0792100:intron 55.0%
GCCGAAGACCCTTCTATTGC+TGG - chr5_3:3204580-3204599 Msa0792100:intron 55.0%
TCTGTGCGTGTATCCCTGTG+TGG - chr5_3:3204715-3204734 Msa0792100:intron 55.0%
GGCTGTACAATACATGCGGC+GGG - chr5_3:3205661-3205680 Msa0792100:intron 55.0%
!! GCGGCGGGTTATTGAGAAGA+AGG - chr5_3:3205676-3205695 Msa0792100:intron 55.0%
TAGAGACTTGAGGAGGACGG+AGG + chr5_3:3206224-3206243 None:intergenic 55.0%
ACTTGGTTCCGGTGTGGATG+AGG - chr5_3:3206287-3206306 Msa0792100:intron 55.0%
TCCGCCCCAGACATGATTAG+AGG + chr5_3:3206752-3206771 None:intergenic 55.0%
GCTCCCCTGACTGATGTAGT+AGG - chr5_3:3207129-3207148 Msa0792100:intron 55.0%
GGCACCCTACTACATCAGTC+AGG + chr5_3:3207137-3207156 None:intergenic 55.0%
GCACACTTGCGGCTTCATCA+GGG + chr5_3:3207276-3207295 None:intergenic 55.0%
TGCACACTTGCGGCTTCATC+AGG + chr5_3:3207277-3207296 None:intergenic 55.0%
TGATGAAGCCGCAAGTGTGC+AGG - chr5_3:3207276-3207295 Msa0792100:intron 55.0%
CGACATAAGAAAGCCAGGCC+AGG + chr5_3:3208183-3208202 None:intergenic 55.0%
GCGTGAAGGGGTGAAGTTTG+TGG + chr5_3:3208910-3208929 None:intergenic 55.0%
! GGACAGCTGGCTGAGGTGTT+TGG - chr5_3:3201645-3201664 Msa0792100:three_prime_UTR 60.0%
ACCCTTGACTTCTCGGGGTC+AGG - chr5_3:3203531-3203550 Msa0792100:intron 60.0%
GCCTGACCCCGAGAAGTCAA+GGG + chr5_3:3203535-3203554 None:intergenic 60.0%
AGCCTGACCCCGAGAAGTCA+AGG + chr5_3:3203536-3203555 None:intergenic 60.0%
ACCCTTGTCTTCTCGGGGTC+AGG - chr5_3:3203657-3203676 Msa0792100:intron 60.0%
GCCTGACCCCGAGAAGACAA+GGG + chr5_3:3203661-3203680 None:intergenic 60.0%
AGCCTGACCCCGAGAAGACA+AGG + chr5_3:3203662-3203681 None:intergenic 60.0%
AGGCTCTCAGCAGACGCTTG+CGG - chr5_3:3209561-3209580 Msa0792100:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3201604 3209861 3201604 ID=Msa0792100;Name=Msa0792100
chr5_3 mRNA 3201604 3209861 3201604 ID=Msa0792100-mRNA-1;Parent=Msa0792100;Name=Msa0792100-mRNA-1;_AED=0.20;_eAED=0.20;_QI=428|0.92|0.92|1|0.92|0.92|14|230|501
chr5_3 exon 3201604 3202061 3201604 ID=Msa0792100-mRNA-1:exon:1444;Parent=Msa0792100-mRNA-1
chr5_3 exon 3203012 3203149 3203012 ID=Msa0792100-mRNA-1:exon:1443;Parent=Msa0792100-mRNA-1
chr5_3 exon 3204168 3204239 3204168 ID=Msa0792100-mRNA-1:exon:1442;Parent=Msa0792100-mRNA-1
chr5_3 exon 3204322 3204456 3204322 ID=Msa0792100-mRNA-1:exon:1441;Parent=Msa0792100-mRNA-1
chr5_3 exon 3205157 3205336 3205157 ID=Msa0792100-mRNA-1:exon:1440;Parent=Msa0792100-mRNA-1
chr5_3 exon 3205440 3205538 3205440 ID=Msa0792100-mRNA-1:exon:1439;Parent=Msa0792100-mRNA-1
chr5_3 exon 3205732 3205812 3205732 ID=Msa0792100-mRNA-1:exon:1438;Parent=Msa0792100-mRNA-1
chr5_3 exon 3206775 3206898 3206775 ID=Msa0792100-mRNA-1:exon:1437;Parent=Msa0792100-mRNA-1
chr5_3 exon 3207483 3207577 3207483 ID=Msa0792100-mRNA-1:exon:1436;Parent=Msa0792100-mRNA-1
chr5_3 exon 3207872 3207998 3207872 ID=Msa0792100-mRNA-1:exon:1435;Parent=Msa0792100-mRNA-1
chr5_3 exon 3208135 3208238 3208135 ID=Msa0792100-mRNA-1:exon:1434;Parent=Msa0792100-mRNA-1
chr5_3 exon 3208362 3208443 3208362 ID=Msa0792100-mRNA-1:exon:1433;Parent=Msa0792100-mRNA-1
chr5_3 exon 3209126 3209354 3209126 ID=Msa0792100-mRNA-1:exon:1432;Parent=Msa0792100-mRNA-1
chr5_3 exon 3209622 3209861 3209622 ID=Msa0792100-mRNA-1:exon:1431;Parent=Msa0792100-mRNA-1
chr5_3 five_prime_UTR 3209622 3209861 3209622 ID=Msa0792100-mRNA-1:five_prime_utr;Parent=Msa0792100-mRNA-1
chr5_3 five_prime_UTR 3209167 3209354 3209167 ID=Msa0792100-mRNA-1:five_prime_utr;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3209126 3209166 3209126 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3208362 3208443 3208362 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3208135 3208238 3208135 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3207872 3207998 3207872 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3207483 3207577 3207483 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3206775 3206898 3206775 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3205732 3205812 3205732 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3205440 3205538 3205440 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3205157 3205336 3205157 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3204322 3204456 3204322 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3204168 3204239 3204168 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3203012 3203149 3203012 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 CDS 3201834 3202061 3201834 ID=Msa0792100-mRNA-1:cds;Parent=Msa0792100-mRNA-1
chr5_3 three_prime_UTR 3201604 3201833 3201604 ID=Msa0792100-mRNA-1:three_prime_utr;Parent=Msa0792100-mRNA-1
Gene Sequence

>Msa0792100

ATGATTGAGCAATTCATCAATTTCGTTATTCGCCCTCCCAGGGCGGACTATAACCCGGATCAGTATCTGTGGGAAAAGGAATTCTCTCTTGCTGGTAGAACCTACCAAAGGCAGGATTTAGAGCTCAAGAATGCCAGAGGCTATACCTTGAAGTGTAGTCATTATCTCCCTTTTCCTTTTCCTGAAGATACTTCTCTTCCTTGTGTTATATATTGCCATGGAAACAGTGGATGTAGGGCAGATGCCAATGAAGCGGCTGTAATTCTCTTGCCATCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTCAGCCTTGGTTGGCACGAAAAAGATGATCTGAAGATTGTGGTGTCGCATTTGAGGAGCAACAAACAAATATCCCGTATAGGTTTATGGGGGAGGTCAATGGGCGCAGTTACTAGCCTTCTTTATGGAGCCGAAGACCCTTCTATTGCTGGAATGGTATTGGATAGCGCCTTTTCAAACTTATATAATCTCATGATGGAGCTTGTGGACGTTTATAAAATCCGGCTTCCAAAGTTCACGGTTAAAATGGCTGTACAATACATGCGGCGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAAATTGAACTGTGTTCTGGTTGCTCCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGTGATGACAAATTCATTCAGCCGCATCACTCTGATCTCATCTCAGAATCCTATGCGGGTGATAAAAATATCATTAAATTTGATGGCGACCATAATTCCTCCCGGCCACAATTCTTTTATGATTCAGTTTCCATTTTCTTCTACAATGTCCTCCGTCCTCCTCAAGTCTCTATTGCTGAAAAGCTCGAGAAATATTATGATTTAGGGGATTTGAAACTTGGTTCCGGTGTGGATGAGAGCGTATTATACGAGATTCTCTCTAGTCTGCGGTCTGCAACTACTGATGCTGCAAGTTCATCTTCTACATTTCCAACAATATCTGCAACAAAATCAGTTAGCGAACTTCTTTCAGAAGTTGCTCCCCTGACTGATGCACCCTTGCTTGAAGATGAAACTACAGATGACAATGATGGAATTGGCCCTGATGAAGCCGCAAGTGTGCAGGGCAAGCTAAATGGCCAGATTGAAGATTGTTGCTCATATACAAGCTCAAATAGAGAAAGTTGGGGCAGGTGTTCTTCATTAGGAGGCAGTGATCAAGAATTTTGTGCAGATTTAAGTGCTGATGATAAGCTCTCTCAGAATACTGTGAAGGTATTTGCAACACCTTTGCGAAGTATGAAAGAGAAATCATCAGACTCAAAAGAAGATGAAAAGAAGCCGAAGAAGGGTAAAAAGAAGAAGAAAAAAGCTGAAACGGTTGCAAAGAAACCAAAGAGTGACAGATTTGAGAAGCTGGAGGCTCTCAGCAGACGCTTGCGGCTTTGTCTTCTTAAGGGATCAACCCATCGAAGAAACAAGTCATCTTGA

Protein sequence

>Msa0792100

MIEQFINFVIRPPRADYNPDQYLWEKEFSLAGRTYQRQDLELKNARGYTLKCSHYLPFPFPEDTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKIVVSHLRSNKQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLYNLMMELVDVYKIRLPKFTVKMAVQYMRRVIEKKAKFDIMKLNCVLVAPKTFIPVLFGHASDDKFIQPHHSDLISESYAGDKNIIKFDGDHNSSRPQFFYDSVSIFFYNVLRPPQVSIAEKLEKYYDLGDLKLGSGVDESVLYEILSSLRSATTDAASSSSTFPTISATKSVSELLSEVAPLTDAPLLEDETTDDNDGIGPDEAASVQGKLNGQIEDCCSYTSSNRESWGRCSSLGGSDQEFCADLSADDKLSQNTVKVFATPLRSMKEKSSDSKEDEKKPKKGKKKKKKAETVAKKPKSDRFEKLEALSRRLRLCLLKGSTHRRNKSS*