AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1441180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441180 MtrunA17_Chr4g0076631 99.475 381 1 1 1 380 1 381 0.0 782
Msa1441180 MtrunA17_Chr2g0291031 81.792 346 63 0 1 346 1 346 0.0 582
Msa1441180 MtrunA17_Chr4g0065941 68.456 298 91 1 2 299 1 295 3.82e-155 441
Msa1441180 MtrunA17_Chr2g0287221 58.601 343 135 3 2 344 1 336 1.42e-146 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1441180 AT4G17150.4 72.727 396 102 3 1 390 10 405 0.0 553
Msa1441180 AT4G17150.1 75.603 373 87 2 1 369 10 382 0.0 553
Msa1441180 AT4G17150.3 76.796 362 82 1 1 360 10 371 0.0 549
Msa1441180 AT4G17150.2 76.796 362 82 1 1 360 10 371 0.0 549
Msa1441180 AT4G17150.5 74.775 333 80 2 41 369 26 358 8.13e-169 481
Msa1441180 AT4G14290.2 71.429 287 82 0 2 288 1 287 3.63e-158 456
Msa1441180 AT4G14290.1 71.429 287 82 0 2 288 1 287 5.48e-158 457
Msa1441180 AT3G23540.1 67.657 303 95 1 2 301 1 303 2.55e-155 450
Msa1441180 AT3G23540.3 69.091 275 82 1 30 301 2 276 1.94e-141 414
Msa1441180 AT4G14290.5 72.532 233 64 0 56 288 1 233 1.63e-127 377
Msa1441180 AT3G23540.2 67.500 160 49 1 145 301 1 160 8.84e-73 234
Msa1441180 AT4G14290.3 70.714 140 41 0 149 288 33 172 7.38e-68 221
Msa1441180 AT4G14290.4 70.803 137 40 0 152 288 1 137 2.62e-67 219

Find 183 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGAGGTGTTTGGTGTTCT+TGG 0.142159 tig0029232:+33083 Msa1441180:five_prime_UTR
GTGGGATTTAGCCTTCTTTA+TGG 0.167652 tig0029232:+35978 Msa1441180:intron
CTCGAGAAATATTATGATTT+AGG 0.172301 tig0029232:+37677 Msa1441180:CDS
AAATATCCCGTATAGGTTTA+TGG 0.173583 tig0029232:+35356 Msa1441180:CDS
TTTAGGAATTGCCAAATATT+TGG 0.181328 tig0029232:+41254 Msa1441180:three_prime_UTR
TTCTCCCAATTAGGTTAAAA+TGG 0.185844 tig0029232:+37062 Msa1441180:intron
ATACTTCTTCTCAGCTTATT+TGG 0.201453 tig0029232:+33193 Msa1441180:five_prime_UTR
TTGCTAACAAGCCAAATATT+TGG 0.214997 tig0029232:-41265 None:intergenic
GGGGCAGGTGTTCTTCATTT+AGG 0.262709 tig0029232:+39797 Msa1441180:three_prime_UTR
CTTGCGGCTTTGTCTTCTTA+AGG 0.270780 tig0029232:+40999 Msa1441180:three_prime_UTR
GCCAATCAGAAACCAATATT+TGG 0.276128 tig0029232:-41184 None:intergenic
TTCTCAAATCTGTCACTCTT+TGG 0.286897 tig0029232:-40955 None:intergenic
CACTCTTATGGACATTCTTT+TGG 0.291644 tig0029232:+38843 Msa1441180:three_prime_UTR
TGCACACTTGCGGCTTCATC+AGG 0.294214 tig0029232:-38695 None:intergenic
AGTTGTGAAGAAAGAGAGAT+TGG 0.297966 tig0029232:+33597 Msa1441180:five_prime_UTR
TGTCGTTGATGACATCATTT+TGG 0.300025 tig0029232:+39618 Msa1441180:three_prime_UTR
TCGAGAAATATTATGATTTA+GGG 0.306533 tig0029232:+37678 Msa1441180:CDS
GAGGACATTGTAGAAGAAAA+TGG 0.307349 tig0029232:-37624 None:intergenic
CTTGCCCTAAAAGTCATTAA+TGG 0.321122 tig0029232:-39719 None:intergenic
TTCTATTGCTGGAATGGTAT+TGG 0.336375 tig0029232:+36013 Msa1441180:CDS
TTGCGGCTTTGTCTTCTTAA+GGG 0.349769 tig0029232:+41000 Msa1441180:three_prime_UTR
ACCCTTGACTTCTCGGGGTC+AGG 0.351572 tig0029232:+34953 Msa1441180:CDS
GCCAAATATTGGTTTCTGAT+TGG 0.356584 tig0029232:+41183 Msa1441180:three_prime_UTR
GAGAATTACAGCCGCTTCAT+TGG 0.360136 tig0029232:-34906 None:intergenic
AATATCCCGTATAGGTTTAT+GGG 0.365038 tig0029232:+35357 Msa1441180:CDS
TTGAAGAACTTTGCAATTTG+AGG 0.368444 tig0029232:-38895 None:intergenic
TACATGTAAAATAAAATTCC+TGG 0.370005 tig0029232:-38758 None:intergenic
AATACCATTCCAGCAATAGA+AGG 0.376973 tig0029232:-36011 None:intergenic
GCCGAAGACCCTTCTATTGC+TGG 0.379355 tig0029232:+36002 Msa1441180:CDS
AAAACTAAGTCTTGATTGAA+TGG 0.381055 tig0029232:+39418 Msa1441180:three_prime_UTR
AAGCTCAAATAGAGAAAGTT+GGG 0.381819 tig0029232:+39777 Msa1441180:three_prime_UTR
TTATATATTGCCATGGAAAC+AGG 0.382845 tig0029232:+34731 Msa1441180:CDS
ATGCTAGTAACACACTCTTA+TGG 0.383088 tig0029232:+38831 Msa1441180:three_prime_UTR
ATAACTATGATCTGTTGATC+AGG 0.392222 tig0029232:-39509 None:intergenic
ATTACAATTAGATTGACTAT+TGG 0.394016 tig0029232:-41082 None:intergenic
AAATAAGCTGAGAAGAAGTA+TGG 0.398646 tig0029232:-33191 None:intergenic
TATGAAATTGAACTGTGTTC+TGG 0.398736 tig0029232:+37134 Msa1441180:CDS
CTACCAAAGGCAGGATTTAG+AGG 0.404625 tig0029232:+34504 Msa1441180:CDS
GAAAAGGAATTCTCTCTTGC+TGG 0.411836 tig0029232:+34475 Msa1441180:CDS
CGAAATGAAATGAAATGAAA+AGG 0.413453 tig0029232:-33250 None:intergenic
GATTTAGGGGATTTGAAACT+TGG 0.415584 tig0029232:+37692 Msa1441180:CDS
TGGTGTTCTTGGAATTGAAT+TGG 0.420124 tig0029232:+33094 Msa1441180:five_prime_UTR
TTGTTAGCTTTATGTAAGCC+TGG 0.422485 tig0029232:+39582 Msa1441180:three_prime_UTR
ACAGATGACAATGATGGAAT+TGG 0.425584 tig0029232:+38671 Msa1441180:CDS
TAAAATATAATTCACGAAAT+CGG 0.425777 tig0029232:-39076 None:intergenic
GGTCAATGGGCGCAGTTACT+AGG 0.428894 tig0029232:+35383 Msa1441180:CDS
AACAATTATGTGCGCCTACA+AGG 0.429525 tig0029232:+39337 Msa1441180:three_prime_UTR
TTGCCTCTAAATCCTGCCTT+TGG 0.430450 tig0029232:-34507 None:intergenic
TTGTGGACGTTTATAAAATC+CGG 0.430844 tig0029232:+36075 Msa1441180:CDS
TTTAAGGTTACTTTCGGAAT+GGG 0.432675 tig0029232:+39133 Msa1441180:three_prime_UTR
GTATCTTCAGGAAAAGGAAA+AGG 0.432727 tig0029232:-34694 None:intergenic
GGGGATTTGAAACTTGGTTC+CGG 0.432780 tig0029232:+37698 Msa1441180:CDS
CTTGCATGTCCAAATAAAAC+AGG 0.434305 tig0029232:-37370 None:intergenic
CTCAGCTTATTTGGTGGTGG+TGG 0.435731 tig0029232:+33202 Msa1441180:five_prime_UTR
GGACAGCTGGCTGAGGTGTT+TGG 0.436350 tig0029232:+33074 Msa1441180:five_prime_UTR
CTTCTCAGCTTATTTGGTGG+TGG 0.438281 tig0029232:+33199 Msa1441180:five_prime_UTR
GAGTGACAGATTTGAGAAGC+TGG 0.441559 tig0029232:+40960 Msa1441180:three_prime_UTR
AGCTTTATGTAAGCCTGGCC+TGG 0.441669 tig0029232:+39587 Msa1441180:three_prime_UTR
AGAGAGAGTACCGTGAACTT+TGG 0.446970 tig0029232:-36101 None:intergenic
AGATGACTTGTTTCTTCGAT+GGG 0.453630 tig0029232:-41028 None:intergenic
GAGTAGTTTATTATAAGAAA+AGG 0.457917 tig0029232:+39480 Msa1441180:three_prime_UTR
AGAGAAGTATCTTCAGGAAA+AGG 0.459180 tig0029232:-34700 None:intergenic
CTTCTTCTCAGCTTATTTGG+TGG 0.459744 tig0029232:+33196 Msa1441180:five_prime_UTR
ATGAGCAACAATCTTCAATC+TGG 0.460440 tig0029232:-39750 None:intergenic
GGCACCCTACTACATCAGTC+AGG 0.465060 tig0029232:-38556 None:intergenic
AAGATGACTTGTTTCTTCGA+TGG 0.466764 tig0029232:-41029 None:intergenic
CTCTTTCTTCACAACTCAAA+AGG 0.468469 tig0029232:-33590 None:intergenic
CAAGGAAGAGAAGTATCTTC+AGG 0.469007 tig0029232:-34706 None:intergenic
CAAGCTCAAATAGAGAAAGT+TGG 0.469326 tig0029232:+39776 Msa1441180:three_prime_UTR
GAGATAATGACTACACTTCA+AGG 0.474252 tig0029232:-34671 None:intergenic
TTTCCCACAGATACTGATCC+GGG 0.477800 tig0029232:-34456 None:intergenic
AAAACAGGAATGAATGTCTT+CGG 0.479091 tig0029232:-37355 None:intergenic
AAACTAAGTCTTGATTGAAT+GGG 0.480982 tig0029232:+39419 Msa1441180:three_prime_UTR
TCCAGCAATAGAAGGGTCTT+CGG 0.485556 tig0029232:-36003 None:intergenic
GAGATTATATAAGTTTGAAA+AGG 0.488604 tig0029232:-36042 None:intergenic
AAAAGAATAAATTGATAAGA+GGG 0.488945 tig0029232:+33044 Msa1441180:five_prime_UTR
ATTGTGGCCGGGAGGAATTA+TGG 0.491620 tig0029232:-37583 None:intergenic
TGATGAAGCCGCAAGTGTGC+AGG 0.493167 tig0029232:+38697 Msa1441180:CDS
GAGAAGAAGTATGGTTAGAG+AGG 0.493381 tig0029232:-33182 None:intergenic
AAAACACAAATTTCGTGTGT+AGG 0.494347 tig0029232:+41111 Msa1441180:three_prime_UTR
AACAAACAAATATCCCGTAT+AGG 0.496030 tig0029232:+35349 Msa1441180:CDS
TTGTCTGTGAAATTAAGAAA+TGG 0.496373 tig0029232:+38734 Msa1441180:CDS
GAAATGAAATGAAATGAAAA+GGG 0.497133 tig0029232:-33249 None:intergenic
TAATGATAACAGCGAAATGA+AGG 0.502100 tig0029232:-41206 None:intergenic
CTCTAAATCCTGCCTTTGGT+AGG 0.502347 tig0029232:-34503 None:intergenic
TGCTGATGATAAGCTCTCTC+AGG 0.502510 tig0029232:+39853 Msa1441180:three_prime_UTR
AATTGATAAGAGGGAAAGAA+AGG 0.506532 tig0029232:+33053 Msa1441180:five_prime_UTR
TGGTAGCTTAGCTCAGACTT+TGG 0.510902 tig0029232:+33222 Msa1441180:five_prime_UTR
TTAAATGATGCAGTGGATGT+AGG 0.518787 tig0029232:+34876 Msa1441180:intron
AGATGAAAAGAAGCCGAAGA+AGG 0.519297 tig0029232:+40891 Msa1441180:three_prime_UTR
AGACCCTTCTATTGCTGGAA+TGG 0.522988 tig0029232:+36007 Msa1441180:CDS
GAAACTACAGATGACAATGA+TGG 0.526697 tig0029232:+38665 Msa1441180:CDS
GGATCAGTATCTGTGGGAAA+AGG 0.529501 tig0029232:+34459 Msa1441180:CDS
ATTTCGTTATTCGCCCTCCC+AGG 0.531333 tig0029232:+33741 Msa1441180:CDS
ATCATAAAAGAATTGTGGCC+GGG 0.532049 tig0029232:-37594 None:intergenic
AGATTGTGGTGTCGCATTTG+AGG 0.532944 tig0029232:+35323 Msa1441180:CDS
AAGAATAATAATACCTGGGA+GGG 0.533025 tig0029232:-33754 None:intergenic
TCGGGGTCAGGCTTATCTGA+TGG 0.533663 tig0029232:+34965 Msa1441180:CDS
GCGGCGGGTTATTGAGAAGA+AGG 0.534978 tig0029232:+37098 Msa1441180:CDS
GAAGTTAAAATTGACAAGTG+TGG 0.535213 tig0029232:+39644 Msa1441180:three_prime_UTR
TATCTTCAGGAAAAGGAAAA+GGG 0.536605 tig0029232:-34693 None:intergenic
GCAGGTGTTCTTCATTTAGG+AGG 0.536656 tig0029232:+39800 Msa1441180:three_prime_UTR
CGACATAAGAAAGCCAGGCC+AGG 0.537184 tig0029232:-39600 None:intergenic
CCTTGTGTTATATATTGCCA+TGG 0.540136 tig0029232:+34724 Msa1441180:CDS
GATGAAAAGAAGCCGAAGAA+GGG 0.543208 tig0029232:+40892 Msa1441180:three_prime_UTR
GTATCTATCTTATAGCCACT+TGG 0.543355 tig0029232:-33696 None:intergenic
TGTAGTTTCATCTTCAAGCA+AGG 0.545400 tig0029232:-38651 None:intergenic
GTACCGTGAACTTTGGAAGC+CGG 0.545459 tig0029232:-36094 None:intergenic
AGCCTGACCCCGAGAAGTCA+AGG 0.546559 tig0029232:-34955 None:intergenic
AAACTTATATAATCTCATGA+TGG 0.546998 tig0029232:+36049 Msa1441180:CDS
AGTAAATAAAATACTAGCAA+AGG 0.547131 tig0029232:-39050 None:intergenic
TAATCTCATGATGGAGCTTG+TGG 0.547533 tig0029232:+36058 Msa1441180:CDS
ACTTGGTTCCGGTGTGGATG+AGG 0.547607 tig0029232:+37709 Msa1441180:CDS
ATCAACGACATAAGAAAGCC+AGG 0.547607 tig0029232:-39605 None:intergenic
TTCTCTTTCATACTTCGCAA+AGG 0.549432 tig0029232:-40850 None:intergenic
AATCATAAAAGAATTGTGGC+CGG 0.549501 tig0029232:-37595 None:intergenic
GTAACACATACCTGTTTCCA+TGG 0.551077 tig0029232:-34741 None:intergenic
GTATTAAATTAATACCGCAT+AGG 0.557960 tig0029232:-37440 None:intergenic
CATTCCTCCTACACATTGAA+CGG 0.558359 tig0029232:+38994 Msa1441180:three_prime_UTR
AGGCTCTCAGCAGACGCTTG+CGG 0.561762 tig0029232:+40983 Msa1441180:three_prime_UTR
GGCTGTACAATACATGCGGC+GGG 0.564086 tig0029232:+37083 Msa1441180:CDS
AGAGGGAAAGAAAGGACAGC+TGG 0.565313 tig0029232:+33061 Msa1441180:five_prime_UTR
TATGATATGATATACAAAAG+AGG 0.565995 tig0029232:-41054 None:intergenic
ATATCCCGTATAGGTTTATG+GGG 0.567406 tig0029232:+35358 Msa1441180:CDS
TAAATGATGCAGTGGATGTA+GGG 0.568274 tig0029232:+34877 Msa1441180:intron
TTAAGAAAAGTTAATCTCAA+AGG 0.570697 tig0029232:-39232 None:intergenic
TCAATGTGTAGGAGGAATGT+TGG 0.573171 tig0029232:-38990 None:intergenic
CAAATAGAGAAAGTTGGGGC+AGG 0.573325 tig0029232:+39782 Msa1441180:three_prime_UTR
AATACTAGCAAAGGTACAGT+AGG 0.573330 tig0029232:-39041 None:intergenic
ACTGAATCATAAAAGAATTG+TGG 0.574633 tig0029232:-37599 None:intergenic
ATGGCGACCATAATTCCTCC+CGG 0.574950 tig0029232:+37576 Msa1441180:CDS
ACACTTCAAGGTATAGCCTC+TGG 0.577166 tig0029232:-34659 None:intergenic
GTAGTTTCATCTTCAAGCAA+GGG 0.578611 tig0029232:-38650 None:intergenic
GGTCTTCGGCTCCATAAAGA+AGG 0.579635 tig0029232:-35989 None:intergenic
AAAGAAAGGACAGCTGGCTG+AGG 0.581463 tig0029232:+33067 Msa1441180:five_prime_UTR
GATGGAGACTATGTCAGCCT+TGG 0.581558 tig0029232:+34983 Msa1441180:CDS
GCACCCTACTACATCAGTCA+GGG 0.585755 tig0029232:-38555 None:intergenic
GTGAAATTAAGAAATGGTCC+AGG 0.587195 tig0029232:+38740 Msa1441180:CDS
ATGAAATGAAATGAAAAGGG+TGG 0.589383 tig0029232:-33246 None:intergenic
AAAAGCACCGTTCAATGTGT+AGG 0.593998 tig0029232:-39001 None:intergenic
GAAAGATGATCTGAAGATTG+TGG 0.598855 tig0029232:+35309 Msa1441180:intron
AATCCGGCTTCCAAAGTTCA+CGG 0.601063 tig0029232:+36091 Msa1441180:CDS
AGCACCGTTCAATGTGTAGG+AGG 0.601412 tig0029232:-38998 None:intergenic
TGGTAGAACCTACCAAAGGC+AGG 0.601644 tig0029232:+34495 Msa1441180:CDS
TAATGGTCAAGTTCAAGTGA+AGG 0.604774 tig0029232:-39702 None:intergenic
TGAAATGAAATGAAAAGGGT+GGG 0.607773 tig0029232:-33245 None:intergenic
GAGACTATGTCAGCCTTGGT+TGG 0.607802 tig0029232:+34987 Msa1441180:CDS
AAAGATAACCTGCACACTTG+CGG 0.608984 tig0029232:-38705 None:intergenic
TAACTATGATCTGTTGATCA+GGG 0.610509 tig0029232:-39508 None:intergenic
CGAGAAATATTATGATTTAG+GGG 0.610738 tig0029232:+37679 Msa1441180:CDS
AACTTACTTCGTGCCAACCA+AGG 0.612981 tig0029232:-35000 None:intergenic
GCACACTTGCGGCTTCATCA+GGG 0.613086 tig0029232:-38694 None:intergenic
TTTGAAACTTGGTTCCGGTG+TGG 0.615743 tig0029232:+37703 Msa1441180:CDS
ATACCATTCCAGCAATAGAA+GGG 0.616504 tig0029232:-36010 None:intergenic
CCATGGCAATATATAACACA+AGG 0.617756 tig0029232:-34724 None:intergenic
CAATAGAGACTTGAGGAGGA+CGG 0.628343 tig0029232:-37646 None:intergenic
ATTCATTTCATGACGCCAAG+TGG 0.629844 tig0029232:+33681 Msa1441180:five_prime_UTR
GATAGACAAAGTTCGAAGAG+TGG 0.633850 tig0029232:+39175 Msa1441180:three_prime_UTR
GTTAAATACCTCATCCACAC+CGG 0.635215 tig0029232:-37717 None:intergenic
AAAGTTCGAAGAGTGGCTAG+TGG 0.637490 tig0029232:+39182 Msa1441180:three_prime_UTR
TGGCTGTACAATACATGCGG+CGG 0.639633 tig0029232:+37082 Msa1441180:CDS
TCAGCAATAGAGACTTGAGG+AGG 0.640185 tig0029232:-37650 None:intergenic
GCCTGACCCCGAGAAGTCAA+GGG 0.640197 tig0029232:-34954 None:intergenic
TAGGGCAGATGCCAATGAAG+CGG 0.642371 tig0029232:+34895 Msa1441180:CDS
CACTTTAAAATCTACACGAG+AGG 0.643395 tig0029232:+38807 Msa1441180:three_prime_UTR
ATAACCCGGATCAGTATCTG+TGG 0.647394 tig0029232:+34452 Msa1441180:CDS
ACACAGGGCGGACTATAACC+CGG 0.648856 tig0029232:+34438 Msa1441180:intron
GTCATGTCAGAATACTGTGA+AGG 0.652766 tig0029232:+40816 Msa1441180:intron
ACGAGATTCTCTCTAGTCTG+CGG 0.652977 tig0029232:+38441 Msa1441180:CDS
AAAGAATAATAATACCTGGG+AGG 0.656822 tig0029232:-33755 None:intergenic
TGACAGATTTGAGAAGCTGG+AGG 0.661868 tig0029232:+40963 Msa1441180:three_prime_UTR
TAACCCGGATCAGTATCTGT+GGG 0.666671 tig0029232:+34453 Msa1441180:CDS
ACATAAAGCTAACAAAGACA+TGG 0.672344 tig0029232:-39574 None:intergenic
AGCTCAAATAGAGAAAGTTG+GGG 0.674107 tig0029232:+39778 Msa1441180:three_prime_UTR
AAATGGCTGTACAATACATG+CGG 0.675349 tig0029232:+37079 Msa1441180:CDS
TTGCTGGTAGAACCTACCAA+AGG 0.679162 tig0029232:+34491 Msa1441180:CDS
CACCCTACTACATCAGTCAG+GGG 0.681270 tig0029232:-38554 None:intergenic
GTGCAGCTCAAGAATGCCAG+AGG 0.686724 tig0029232:+34643 Msa1441180:intron
ATAAAAGAATTGTGGCCGGG+AGG 0.694195 tig0029232:-37591 None:intergenic
TAGAGACTTGAGGAGGACGG+AGG 0.699920 tig0029232:-37643 None:intergenic
TATCCCGTATAGGTTTATGG+GGG 0.742479 tig0029232:+35359 Msa1441180:CDS
GAGATGAGATCAGAGTGATG+CGG 0.757183 tig0029232:-37412 None:intergenic
TCTCATCTCAGAATCCTATG+CGG 0.772408 tig0029232:+37426 Msa1441180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTAAGATTTTATTT+TGG + tig0029232:36424-36443 Msa1441180:intron 10.0%
!! AAAAATATCATTAAATTTGA+TGG + tig0029232:37557-37576 Msa1441180:CDS 10.0%
!! AAAGTAACAATAATAATTTA+TGG - tig0029232:38305-38324 None:intergenic 10.0%
!! AATTATATTGTAATTATGTT+AGG - tig0029232:40039-40058 None:intergenic 10.0%
!! AAAAAGGAAAAAAAAAAAAA+AGG + tig0029232:40189-40208 Msa1441180:intron 10.0%
!! AAAAAGAATAAATTGATAAG+AGG + tig0029232:33043-33062 Msa1441180:five_prime_UTR 15.0%
!! AAAAGAATAAATTGATAAGA+GGG + tig0029232:33044-33063 Msa1441180:five_prime_UTR 15.0%
!! AAAAAAGAATAATAATACCT+GGG - tig0029232:33761-33780 None:intergenic 15.0%
!! TAAAAAAGAATAATAATACC+TGG - tig0029232:33762-33781 None:intergenic 15.0%
!!! TCTTTTTTATTCATCAAATT+TGG + tig0029232:33773-33792 Msa1441180:intron 15.0%
!!! AAAACTTTTTGAAATAGTAT+GGG - tig0029232:34194-34213 None:intergenic 15.0%
!! AAGTTAGATAGAAATATATA+TGG + tig0029232:35451-35470 Msa1441180:intron 15.0%
!! AAATTGTTAAAACAAAAGTT+GGG + tig0029232:36489-36508 Msa1441180:intron 15.0%
!!! CAAAGAACATAATTTTTTTT+GGG - tig0029232:37796-37815 None:intergenic 15.0%
!!! ACAAAGAACATAATTTTTTT+TGG - tig0029232:37797-37816 None:intergenic 15.0%
!!! ATGGTAATATTTAAGTTATA+TGG + tig0029232:38002-38021 Msa1441180:intron 15.0%
!! TAAAATTGAAGATATTAACT+TGG + tig0029232:38049-38068 Msa1441180:intron 15.0%
!! AAAATGGAAAAACAAAAAAA+AGG + tig0029232:38116-38135 Msa1441180:intron 15.0%
!! AACATTATCATGATTATATA+TGG + tig0029232:38243-38262 Msa1441180:intron 15.0%
!!! TTATTATTGTTACTTTTTTG+TGG + tig0029232:38309-38328 Msa1441180:intron 15.0%
!!! TTTTATATTAGTATGGTTTT+AGG + tig0029232:38337-38356 Msa1441180:intron 15.0%
!!! AACTAAATAGAAAGTTTTTT+TGG - tig0029232:38606-38625 None:intergenic 15.0%
!! TAAAATATAATTCACGAAAT+CGG - tig0029232:39079-39098 None:intergenic 15.0%
!! ATGCTAAAATTATAAAAATG+TGG - tig0029232:39679-39698 None:intergenic 15.0%
!!! TTTTTTTCCTTTTTTAGTTT+TGG - tig0029232:40183-40202 None:intergenic 15.0%
!! GAAATGAAATGAAATGAAAA+GGG - tig0029232:33252-33271 None:intergenic 20.0%
!!! CTTTTCATTTCATTTCATTT+CGG + tig0029232:33251-33270 Msa1441180:five_prime_UTR 20.0%
!!! ACTACTACTTTTTCATTTTT+CGG + tig0029232:33494-33513 Msa1441180:intron 20.0%
!!! ATTTTAATAAGCTATATTGG+AGG - tig0029232:33915-33934 None:intergenic 20.0%
!!! GGTATTTTAATAAGCTATAT+TGG - tig0029232:33918-33937 None:intergenic 20.0%
!!! AAACATCATATTAACTTGTT+TGG - tig0029232:34057-34076 None:intergenic 20.0%
!!! ATGTTTATCTTCTTTTGATT+TGG + tig0029232:34123-34142 Msa1441180:intron 20.0%
!!! AAACTTTTTGAAATAGTATG+GGG - tig0029232:34193-34212 None:intergenic 20.0%
!!! CAAAACTTTTTGAAATAGTA+TGG - tig0029232:34195-34214 None:intergenic 20.0%
!!! CATACTATTTCAAAAAGTTT+TGG + tig0029232:34193-34212 Msa1441180:intron 20.0%
!!! AGTATCGAGTATTTATTTTA+TGG + tig0029232:34529-34548 Msa1441180:intron 20.0%
!!! GTATCGAGTATTTATTTTAT+GGG + tig0029232:34530-34549 Msa1441180:intron 20.0%
!! GTAAAAACAGTAATATTTGA+TGG - tig0029232:34935-34954 None:intergenic 20.0%
!!! ATTAAGAATTTATGCTGTTT+TGG + tig0029232:35559-35578 Msa1441180:intron 20.0%
!!! AATATTTTTGTTTCAAACAC+AGG - tig0029232:35748-35767 None:intergenic 20.0%
!! GAGATTATATAAGTTTGAAA+AGG - tig0029232:36045-36064 None:intergenic 20.0%
!! AAACTTATATAATCTCATGA+TGG + tig0029232:36049-36068 Msa1441180:CDS 20.0%
!!! TTCAAGTCTTTTACAATAAA+GGG - tig0029232:36182-36201 None:intergenic 20.0%
!!! TTTCAAGTCTTTTACAATAA+AGG - tig0029232:36183-36202 None:intergenic 20.0%
!!! TAATTTCCTTTTTGTTAAGA+TGG + tig0029232:36357-36376 Msa1441180:intron 20.0%
!!! TAAGATTTTATTTTGGATCT+AGG + tig0029232:36431-36450 Msa1441180:intron 20.0%
!!! AAGATTTTATTTTGGATCTA+GGG + tig0029232:36432-36451 Msa1441180:intron 20.0%
!!! AATTATAGCTCTTTTTTACT+AGG + tig0029232:36466-36485 Msa1441180:intron 20.0%
!! GAAATTGTTAAAACAAAAGT+TGG + tig0029232:36488-36507 Msa1441180:intron 20.0%
!! AATTGTTAAAACAAAAGTTG+GGG + tig0029232:36490-36509 Msa1441180:intron 20.0%
!! ATTATTAATCATGACAAGTT+TGG + tig0029232:36514-36533 Msa1441180:intron 20.0%
!!! GAATATACTTTTATTTTGCA+TGG + tig0029232:36551-36570 Msa1441180:intron 20.0%
!! AACTAGTATCATGTATAATT+AGG + tig0029232:36648-36667 Msa1441180:intron 20.0%
!! AAAAAAATCTTTATGCATTG+TGG - tig0029232:36696-36715 None:intergenic 20.0%
!! TATATAGTTGTATACCAATT+TGG - tig0029232:36795-36814 None:intergenic 20.0%
!!! TGATTTTATAACTTTTATGC+TGG + tig0029232:36939-36958 Msa1441180:intron 20.0%
!!! GCATTAATTTAAGATAGAAA+TGG - tig0029232:37314-37333 None:intergenic 20.0%
!!! TAAACAGAAGTTAGATATTT+TGG - tig0029232:37520-37539 None:intergenic 20.0%
!! TCGAGAAATATTATGATTTA+GGG + tig0029232:37678-37697 Msa1441180:CDS 20.0%
!! ACATTTAACTAAATTCTTTG+AGG - tig0029232:37958-37977 None:intergenic 20.0%
!! TTATCCATTACTTATAATGT+AGG + tig0029232:38625-38644 Msa1441180:intron 20.0%
!! TACATGTAAAATAAAATTCC+TGG - tig0029232:38761-38780 None:intergenic 20.0%
!!! AGGAATTTTATTTTACATGT+AGG + tig0029232:38760-38779 Msa1441180:CDS 20.0%
!! AGTAAATAAAATACTAGCAA+AGG - tig0029232:39053-39072 None:intergenic 20.0%
!! TTAAGAAAAGTTAATCTCAA+AGG - tig0029232:39235-39254 None:intergenic 20.0%
!! GAGTAGTTTATTATAAGAAA+AGG + tig0029232:39480-39499 Msa1441180:three_prime_UTR 20.0%
!!! AAAGTATTTTTTCTCAAATG+CGG - tig0029232:40654-40673 None:intergenic 20.0%
!! TATGATATGATATACAAAAG+AGG - tig0029232:41057-41076 None:intergenic 20.0%
!! ATTACAATTAGATTGACTAT+TGG - tig0029232:41085-41104 None:intergenic 20.0%
! CGAAATGAAATGAAATGAAA+AGG - tig0029232:33253-33272 None:intergenic 25.0%
!! TTTTCGACTTTAATCTTTCT+TGG - tig0029232:33337-33356 None:intergenic 25.0%
! ACAAGCAAGTTTATGAAATA+TGG - tig0029232:33416-33435 None:intergenic 25.0%
!!! TCAATGTCATACTACTTTTA+AGG + tig0029232:33451-33470 Msa1441180:intron 25.0%
!!! CAATGTCATACTACTTTTAA+GGG + tig0029232:33452-33471 Msa1441180:intron 25.0%
!!! CTACTACTTTTTCATTTTTC+GGG + tig0029232:33495-33514 Msa1441180:intron 25.0%
! AAACAATCTCACAAAACTTA+TGG - tig0029232:33828-33847 None:intergenic 25.0%
!!! ATAAGTTTTGTGAGATTGTT+TGG + tig0029232:33827-33846 Msa1441180:intron 25.0%
!!! CATAAGCTATTTTATAGCAA+AGG - tig0029232:33979-33998 None:intergenic 25.0%
! ATAATGAGAACTATCTAACA+TGG - tig0029232:34257-34276 None:intergenic 25.0%
! CAATTATTGTTGCCTATATA+TGG + tig0029232:34559-34578 Msa1441180:intron 25.0%
! AAATAAACACATTCACAAAG+AGG - tig0029232:35027-35046 None:intergenic 25.0%
! TATGTCATATTATCCTTAGT+TGG + tig0029232:35118-35137 Msa1441180:intron 25.0%
! CAAAAAACACATTCATAAAG+AGG - tig0029232:35158-35177 None:intergenic 25.0%
! TAAATCGGAAAAACATAAAG+CGG + tig0029232:35782-35801 Msa1441180:intron 25.0%
! ATGTATACAGAGAAAATGTA+AGG - tig0029232:35904-35923 None:intergenic 25.0%
! TACTTTCCATCTTAACAAAA+AGG - tig0029232:36366-36385 None:intergenic 25.0%
! AAGATGGAAAGTAAAGAAAA+AGG + tig0029232:36373-36392 Msa1441180:intron 25.0%
! AAGTATATTCTTCAATCCTA+GGG - tig0029232:36402-36421 None:intergenic 25.0%
! TAAGTATATTCTTCAATCCT+AGG - tig0029232:36403-36422 None:intergenic 25.0%
! AAAAGAGCTATAATTATGAG+AGG - tig0029232:36461-36480 None:intergenic 25.0%
!!! ATTTTGCATGGTTGTTTTTA+AGG + tig0029232:36563-36582 Msa1441180:intron 25.0%
!!! TTTTGCATGGTTGTTTTTAA+GGG + tig0029232:36564-36583 Msa1441180:intron 25.0%
!!! TGAACTATTTTTTAAGCTGT+AGG + tig0029232:36729-36748 Msa1441180:intron 25.0%
! AGCTGAAAATCAAAATATGT+GGG - tig0029232:36765-36784 None:intergenic 25.0%
! GTATACAACTATATATGCAT+TGG + tig0029232:36800-36819 Msa1441180:intron 25.0%
!!! TATGCATTGGATTTACTTTT+AGG + tig0029232:36813-36832 Msa1441180:intron 25.0%
! TCATTCAATCAAACAATACA+CGG - tig0029232:36877-36896 None:intergenic 25.0%
! AAACAAAATATGATCGATGA+AGG - tig0029232:37217-37236 None:intergenic 25.0%
!!! ACATTCATTCCTGTTTTATT+TGG + tig0029232:37361-37380 Msa1441180:CDS 25.0%
! GTATTAAATTAATACCGCAT+AGG - tig0029232:37443-37462 None:intergenic 25.0%
!!! GTTAGATATTTTGGCTATTA+AGG - tig0029232:37511-37530 None:intergenic 25.0%
! ACTTCTGTTTATGAATTTGT+AGG + tig0029232:37529-37548 Msa1441180:intron 25.0%
! CTTCTGTTTATGAATTTGTA+GGG + tig0029232:37530-37549 Msa1441180:intron 25.0%
! ACTGAATCATAAAAGAATTG+TGG - tig0029232:37602-37621 None:intergenic 25.0%
! CTCGAGAAATATTATGATTT+AGG + tig0029232:37677-37696 Msa1441180:CDS 25.0%
! CGAGAAATATTATGATTTAG+GGG + tig0029232:37679-37698 Msa1441180:CDS 25.0%
! TTATTTGTGAACTAACGAAA+TGG + tig0029232:37983-38002 Msa1441180:intron 25.0%
! AATGTTTCCAAAAACTGAAA+TGG - tig0029232:38229-38248 None:intergenic 25.0%
!!! GGCATTGTTTTATATTAGTA+TGG + tig0029232:38330-38349 Msa1441180:intron 25.0%
! AAAAAATAGACAGAAGGTTA+AGG - tig0029232:38580-38599 None:intergenic 25.0%
! TGGAAAAAAAAATAGACAGA+AGG - tig0029232:38586-38605 None:intergenic 25.0%
! TTGTCTGTGAAATTAAGAAA+TGG + tig0029232:38734-38753 Msa1441180:CDS 25.0%
!! AAACTGCAAATGCAATTTTA+AGG + tig0029232:39117-39136 Msa1441180:three_prime_UTR 25.0%
!!! TGCAATTTTAAGGTTACTTT+CGG + tig0029232:39127-39146 Msa1441180:three_prime_UTR 25.0%
! AAAACTAAGTCTTGATTGAA+TGG + tig0029232:39418-39437 Msa1441180:three_prime_UTR 25.0%
! AAACTAAGTCTTGATTGAAT+GGG + tig0029232:39419-39438 Msa1441180:three_prime_UTR 25.0%
!! TTTCATTAGTAGACTTTTTG+TGG + tig0029232:39449-39468 Msa1441180:three_prime_UTR 25.0%
!!! TTTTAAGTGTTGTTTTACTC+TGG + tig0029232:39545-39564 Msa1441180:three_prime_UTR 25.0%
!! TTGACCATTAATGACTTTTA+GGG + tig0029232:39715-39734 Msa1441180:three_prime_UTR 25.0%
! CCTTGCTTATATATATTTCA+TGG - tig0029232:40144-40163 None:intergenic 25.0%
! CCATGAAATATATATAAGCA+AGG + tig0029232:40141-40160 Msa1441180:intron 25.0%
!!! TTTAGTTTTGGACCTAAATT+TGG - tig0029232:40171-40190 None:intergenic 25.0%
! TTTAGGTCCAAAACTAAAAA+AGG + tig0029232:40173-40192 Msa1441180:intron 25.0%
! AAAAAAAAAAAAGGACACCA+AGG + tig0029232:40198-40217 Msa1441180:intron 25.0%
! AAAAAAAAAAAGGACACCAA+GGG + tig0029232:40199-40218 Msa1441180:intron 25.0%
! AAAAGTGAGAATTTGAGAAA+TGG - tig0029232:40364-40383 None:intergenic 25.0%
! AGAATAGAAGATGTAGAAAT+TGG + tig0029232:40503-40522 Msa1441180:intron 25.0%
! GAATAGAAGATGTAGAAATT+GGG + tig0029232:40504-40523 Msa1441180:intron 25.0%
! AATAGAAGATGTAGAAATTG+GGG + tig0029232:40505-40524 Msa1441180:intron 25.0%
!!! TTTTAGGAATTGCCAAATAT+TGG + tig0029232:41172-41191 Msa1441180:three_prime_UTR 25.0%
! TTTAGGAATTGCCAAATATT+TGG + tig0029232:41173-41192 Msa1441180:three_prime_UTR 25.0%
AATTGATAAGAGGGAAAGAA+AGG + tig0029232:33053-33072 Msa1441180:five_prime_UTR 30.0%
AAATAAGCTGAGAAGAAGTA+TGG - tig0029232:33194-33213 None:intergenic 30.0%
ATACTTCTTCTCAGCTTATT+TGG + tig0029232:33193-33212 Msa1441180:five_prime_UTR 30.0%
TGAAATGAAATGAAAAGGGT+GGG - tig0029232:33248-33267 None:intergenic 30.0%
ATGAAATGAAATGAAAAGGG+TGG - tig0029232:33249-33268 None:intergenic 30.0%
ACTTTAATCTTTCTTGGCTT+GGG - tig0029232:33331-33350 None:intergenic 30.0%
! TGCGTCAATTTTCATCATTT+GGG + tig0029232:33359-33378 Msa1441180:intron 30.0%
! GATTCTTTTAAACTTCTCAC+AGG + tig0029232:33517-33536 Msa1441180:intron 30.0%
TTTAAACTTCTCACAGGAAT+TGG + tig0029232:33523-33542 Msa1441180:intron 30.0%
AAGAATAATAATACCTGGGA+GGG - tig0029232:33757-33776 None:intergenic 30.0%
AAAGAATAATAATACCTGGG+AGG - tig0029232:33758-33777 None:intergenic 30.0%
TAAGATAAGCTGCTCAAATA+AGG - tig0029232:33803-33822 None:intergenic 30.0%
ATGTTTCTTTCTTCACTAAG+AGG + tig0029232:34071-34090 Msa1441180:intron 30.0%
TTGCAAATTGAGTTACAGTT+TGG + tig0029232:34395-34414 Msa1441180:intron 30.0%
TGCAAATTGAGTTACAGTTT+GGG + tig0029232:34396-34415 Msa1441180:intron 30.0%
TATTGTTGCCTATATATGGA+AGG + tig0029232:34563-34582 Msa1441180:intron 30.0%
TATCTTCAGGAAAAGGAAAA+GGG - tig0029232:34696-34715 None:intergenic 30.0%
TTATATATTGCCATGGAAAC+AGG + tig0029232:34731-34750 Msa1441180:CDS 30.0%
!!! ACAGGTATGTGTTACTTTTA+TGG + tig0029232:34749-34768 Msa1441180:intron 30.0%
ACAAGTACACATATCAAAAG+GGG - tig0029232:34855-34874 None:intergenic 30.0%
CACAAGTACACATATCAAAA+GGG - tig0029232:34856-34875 None:intergenic 30.0%
ACACAAGTACACATATCAAA+AGG - tig0029232:34857-34876 None:intergenic 30.0%
AACAAACAAATATCCCGTAT+AGG + tig0029232:35349-35368 Msa1441180:CDS 30.0%
AAATATCCCGTATAGGTTTA+TGG + tig0029232:35356-35375 Msa1441180:CDS 30.0%
AATATCCCGTATAGGTTTAT+GGG + tig0029232:35357-35376 Msa1441180:CDS 30.0%
TAGAACATTATTGCATCGTT+TGG + tig0029232:35481-35500 Msa1441180:intron 30.0%
AAATCGGAAAAACATAAAGC+GGG + tig0029232:35783-35802 Msa1441180:intron 30.0%
!! TAATGTTCACTTTGCTTTTG+TGG + tig0029232:35959-35978 Msa1441180:intron 30.0%
!! AATGTTCACTTTGCTTTTGT+GGG + tig0029232:35960-35979 Msa1441180:intron 30.0%
TTGTGGACGTTTATAAAATC+CGG + tig0029232:36075-36094 Msa1441180:CDS 30.0%
! TCTTTTACAATAAAGGGAGT+TGG - tig0029232:36176-36195 None:intergenic 30.0%
!!! TTTGCATGGTTGTTTTTAAG+GGG + tig0029232:36565-36584 Msa1441180:intron 30.0%
ATGATACTAGTTGAAACTCT+CGG - tig0029232:36640-36659 None:intergenic 30.0%
!!! ATTTTTTAAGCTGTAGGTGT+AGG + tig0029232:36735-36754 Msa1441180:intron 30.0%
GAGCTGAAAATCAAAATATG+TGG - tig0029232:36766-36785 None:intergenic 30.0%
GTTTGATTGAATGAATGAAC+TGG + tig0029232:36883-36902 Msa1441180:intron 30.0%
GTTATAAAATCACGCAAACT+AGG - tig0029232:36931-36950 None:intergenic 30.0%
! GTCTAGTATGTTTGTTAAGT+CGG + tig0029232:37024-37043 Msa1441180:intron 30.0%
TTCTCCCAATTAGGTTAAAA+TGG + tig0029232:37062-37081 Msa1441180:intron 30.0%
!! ACAGCCATTTTAACCTAATT+GGG - tig0029232:37069-37088 None:intergenic 30.0%
!! TACAGCCATTTTAACCTAAT+TGG - tig0029232:37070-37089 None:intergenic 30.0%
TATGAAATTGAACTGTGTTC+TGG + tig0029232:37134-37153 Msa1441180:CDS 30.0%
!!! TTAATGCTTTTAAAGCGTAC+AGG + tig0029232:37327-37346 Msa1441180:intron 30.0%
AAAACAGGAATGAATGTCTT+CGG - tig0029232:37358-37377 None:intergenic 30.0%
AATCATAAAAGAATTGTGGC+CGG - tig0029232:37598-37617 None:intergenic 30.0%
AAGAACATAATTAAGTGAGC+AGG - tig0029232:37766-37785 None:intergenic 30.0%
TCTTGAGCAAGGTAAAATTA+TGG - tig0029232:38091-38110 None:intergenic 30.0%
! TCAACTTCCATTTCAGTTTT+TGG + tig0029232:38219-38238 Msa1441180:intron 30.0%
! GATTTTGTTGCAGATATTGT+TGG - tig0029232:38506-38525 None:intergenic 30.0%
TTGAAGAACTTTGCAATTTG+AGG - tig0029232:38898-38917 None:intergenic 30.0%
!!! TTTTAAGGTTACTTTCGGAA+TGG + tig0029232:39132-39151 Msa1441180:three_prime_UTR 30.0%
! TTTAAGGTTACTTTCGGAAT+GGG + tig0029232:39133-39152 Msa1441180:three_prime_UTR 30.0%
ACTTGTGAAAAAATCCTTGT+AGG - tig0029232:39354-39373 None:intergenic 30.0%
!!! ACTTAGTTTTTAGAGTAGTG+GGG - tig0029232:39408-39427 None:intergenic 30.0%
!!! GACTTAGTTTTTAGAGTAGT+GGG - tig0029232:39409-39428 None:intergenic 30.0%
!!! AGACTTAGTTTTTAGAGTAG+TGG - tig0029232:39410-39429 None:intergenic 30.0%
TAACTATGATCTGTTGATCA+GGG - tig0029232:39511-39530 None:intergenic 30.0%
ATAACTATGATCTGTTGATC+AGG - tig0029232:39512-39531 None:intergenic 30.0%
ACATAAAGCTAACAAAGACA+TGG - tig0029232:39577-39596 None:intergenic 30.0%
GAAGTTAAAATTGACAAGTG+TGG + tig0029232:39644-39663 Msa1441180:three_prime_UTR 30.0%
! CTTGACCATTAATGACTTTT+AGG + tig0029232:39714-39733 Msa1441180:three_prime_UTR 30.0%
AAGCTCAAATAGAGAAAGTT+GGG + tig0029232:39777-39796 Msa1441180:three_prime_UTR 30.0%
!! GTTAGGAGTAATTAGTCTTT+AGG - tig0029232:40022-40041 None:intergenic 30.0%
CACTTAAGTAGGTTAATGAA+GGG - tig0029232:40095-40114 None:intergenic 30.0%
TCACTTAAGTAGGTTAATGA+AGG - tig0029232:40096-40115 None:intergenic 30.0%
GAATAGGTAATATTGACCAA+GGG + tig0029232:40221-40240 Msa1441180:intron 30.0%
AAGATGGTAAATTGACATCA+TGG + tig0029232:40245-40264 Msa1441180:intron 30.0%
TTGACATCATGGCTATAAAT+AGG + tig0029232:40256-40275 Msa1441180:intron 30.0%
ATCAGAGTTCACAAAATTTG+CGG + tig0029232:40296-40315 Msa1441180:intron 30.0%
ATTTGAGAAATGGTGATTTG+TGG - tig0029232:40354-40373 None:intergenic 30.0%
!! ACTTGTTTGTGGTTTTACTA+CGG - tig0029232:40400-40419 None:intergenic 30.0%
CTGAAAATTCTACTTGTTTG+TGG - tig0029232:40411-40430 None:intergenic 30.0%
TAAATAAGCTTCTTCACACT+TGG - tig0029232:40448-40467 None:intergenic 30.0%
AGAAGCTTATTTACTGAAGA+TGG + tig0029232:40455-40474 Msa1441180:intron 30.0%
ATAGAAGATGTAGAAATTGG+GGG + tig0029232:40506-40525 Msa1441180:intron 30.0%
! ATTTGCCTGCTAGTTTATAT+AGG + tig0029232:40744-40763 Msa1441180:intron 30.0%
! TTTGCCTGCTAGTTTATATA+GGG + tig0029232:40745-40764 Msa1441180:intron 30.0%
TAGCAATAAATACACATGAG+TGG - tig0029232:40785-40804 None:intergenic 30.0%
! TTCTTCTTTTTACCCTTCTT+CGG - tig0029232:40907-40926 None:intergenic 30.0%
GAAGAAGAAAAAAGCTGAAA+CGG + tig0029232:40921-40940 Msa1441180:three_prime_UTR 30.0%
AAAACACAAATTTCGTGTGT+AGG + tig0029232:41111-41130 Msa1441180:three_prime_UTR 30.0%
!! AGCATGACTAACTCATTTTT+AGG + tig0029232:41156-41175 Msa1441180:three_prime_UTR 30.0%
TAATGATAACAGCGAAATGA+AGG - tig0029232:41209-41228 None:intergenic 30.0%
! GAACATGACTAACTCATTTT+AGG + tig0029232:41237-41256 Msa1441180:three_prime_UTR 30.0%
TGGTGTTCTTGGAATTGAAT+TGG + tig0029232:33094-33113 Msa1441180:five_prime_UTR 35.0%
GACTTTAATCTTTCTTGGCT+TGG - tig0029232:33332-33351 None:intergenic 35.0%
! GTGCGTCAATTTTCATCATT+TGG + tig0029232:33358-33377 Msa1441180:intron 35.0%
GTAGTAGTTTCAGATCCAAA+TGG - tig0029232:33482-33501 None:intergenic 35.0%
CTCTTTCTTCACAACTCAAA+AGG - tig0029232:33593-33612 None:intergenic 35.0%
AGTTGTGAAGAAAGAGAGAT+TGG + tig0029232:33597-33616 Msa1441180:five_prime_UTR 35.0%
GTATCTATCTTATAGCCACT+TGG - tig0029232:33699-33718 None:intergenic 35.0%
TAAGCTATATTGGAGGACTT+AGG - tig0029232:33908-33927 None:intergenic 35.0%
! TGTGTTTTGTGTATGCTGTA+AGG - tig0029232:33939-33958 None:intergenic 35.0%
TTCTTCACTAAGAGGTCAAT+AGG + tig0029232:34079-34098 Msa1441180:intron 35.0%
TCTTCACTAAGAGGTCAATA+GGG + tig0029232:34080-34099 Msa1441180:intron 35.0%
! CATGGTTCTTTGAAGATTGT+TGG - tig0029232:34239-34258 None:intergenic 35.0%
ACATGTTGAGACTTGAGAAA+TGG - tig0029232:34361-34380 None:intergenic 35.0%
TTATACTTTGCCACATACAC+AGG + tig0029232:34422-34441 Msa1441180:intron 35.0%
TATACTTTGCCACATACACA+GGG + tig0029232:34423-34442 Msa1441180:intron 35.0%
GTGATGTACCTTCCATATAT+AGG - tig0029232:34574-34593 None:intergenic 35.0%
GAGATAATGACTACACTTCA+AGG - tig0029232:34674-34693 None:intergenic 35.0%
GTATCTTCAGGAAAAGGAAA+AGG - tig0029232:34697-34716 None:intergenic 35.0%
!! AGAGAAGTATCTTCAGGAAA+AGG - tig0029232:34703-34722 None:intergenic 35.0%
CCATGGCAATATATAACACA+AGG - tig0029232:34727-34746 None:intergenic 35.0%
CCTTGTGTTATATATTGCCA+TGG + tig0029232:34724-34743 Msa1441180:CDS 35.0%
TAATTCAGAACCAATAGCAG+TGG - tig0029232:34775-34794 None:intergenic 35.0%
ACTTGTGTTAAATGATGCAG+TGG + tig0029232:34869-34888 Msa1441180:intron 35.0%
TTAAATGATGCAGTGGATGT+AGG + tig0029232:34876-34895 Msa1441180:intron 35.0%
TAAATGATGCAGTGGATGTA+GGG + tig0029232:34877-34896 Msa1441180:intron 35.0%
!! TGTTTTTACCCTTGACTTCT+CGG + tig0029232:34946-34965 Msa1441180:CDS 35.0%
!! TGTTTTTACCCTTGTCTTCT+CGG + tig0029232:35072-35091 Msa1441180:intron 35.0%
AAGTTACTTCAAGCCAACTA+AGG - tig0029232:35134-35153 None:intergenic 35.0%
TCTTGCACGTGAAATTGTAA+CGG - tig0029232:35251-35270 None:intergenic 35.0%
ATCATCTTTCTACCACACAA+AGG - tig0029232:35299-35318 None:intergenic 35.0%
GAAAGATGATCTGAAGATTG+TGG + tig0029232:35309-35328 Msa1441180:intron 35.0%
ATATCCCGTATAGGTTTATG+GGG + tig0029232:35358-35377 Msa1441180:CDS 35.0%
AAAACTTATCCCACTAAGTG+GGG - tig0029232:35520-35539 None:intergenic 35.0%
CAAAACTTATCCCACTAAGT+GGG - tig0029232:35521-35540 None:intergenic 35.0%
GTATCTCACCAAGAAAAGAA+AGG + tig0029232:35602-35621 Msa1441180:intron 35.0%
! ATTGAGGTCCTTTCTTTTCT+TGG - tig0029232:35613-35632 None:intergenic 35.0%
AAGAAAAGAAAGGACCTCAA+TGG + tig0029232:35612-35631 Msa1441180:intron 35.0%
AGAAAAGAAAGGACCTCAAT+GGG + tig0029232:35613-35632 Msa1441180:intron 35.0%
TATGTGAAAATCACCCATTG+AGG - tig0029232:35629-35648 None:intergenic 35.0%
! TCCACTAAAGTTTTCTGTCA+AGG + tig0029232:35664-35683 Msa1441180:intron 35.0%
! CCACTAAAGTTTTCTGTCAA+GGG + tig0029232:35665-35684 Msa1441180:intron 35.0%
ATACCATTCCAGCAATAGAA+GGG - tig0029232:36013-36032 None:intergenic 35.0%
AATACCATTCCAGCAATAGA+AGG - tig0029232:36014-36033 None:intergenic 35.0%
TTCTATTGCTGGAATGGTAT+TGG + tig0029232:36013-36032 Msa1441180:CDS 35.0%
CATTCTTCATAAGTTGTTGC+TGG + tig0029232:36263-36282 Msa1441180:intron 35.0%
GTAAAGAAAAAGGAATCCCT+AGG + tig0029232:36383-36402 Msa1441180:intron 35.0%
ATGTATAATTAGGCCAAAGC+TGG + tig0029232:36658-36677 Msa1441180:intron 35.0%
TGTATAATTAGGCCAAAGCT+GGG + tig0029232:36659-36678 Msa1441180:intron 35.0%
CAATTCTAACTGACAGCTAT+AGG - tig0029232:37005-37024 None:intergenic 35.0%
! TGTTGCATTTTCTCCCAATT+AGG + tig0029232:37053-37072 Msa1441180:intron 35.0%
AAATGGCTGTACAATACATG+CGG + tig0029232:37079-37098 Msa1441180:CDS 35.0%
ATGACGAATCTAACCACAAT+AGG + tig0029232:37246-37265 Msa1441180:intron 35.0%
!! AACCACAATAGGCTTTATTC+AGG + tig0029232:37257-37276 Msa1441180:intron 35.0%
AACCTGAATAAAGCCTATTG+TGG - tig0029232:37262-37281 None:intergenic 35.0%
CTTGCATGTCCAAATAAAAC+AGG - tig0029232:37373-37392 None:intergenic 35.0%
ATCATAAAAGAATTGTGGCC+GGG - tig0029232:37597-37616 None:intergenic 35.0%
GAGGACATTGTAGAAGAAAA+TGG - tig0029232:37627-37646 None:intergenic 35.0%
! TTTTCAGCAATAGAGACTTG+AGG - tig0029232:37656-37675 None:intergenic 35.0%
! GATTTAGGGGATTTGAAACT+TGG + tig0029232:37692-37711 Msa1441180:CDS 35.0%
TGAATAACTAGTAGTGTGGA+GGG - tig0029232:37829-37848 None:intergenic 35.0%
! AACTAAATTCTTTGAGGACC+AGG - tig0029232:37952-37971 None:intergenic 35.0%
! CATTTTGTTGATCTTGAGCA+AGG - tig0029232:38102-38121 None:intergenic 35.0%
CTTGCTCAAGATCAACAAAA+TGG + tig0029232:38100-38119 Msa1441180:intron 35.0%
TGAAACCTCTAATCATGTCT+GGG + tig0029232:38166-38185 Msa1441180:intron 35.0%
GGTGCCTACATTATAAGTAA+TGG - tig0029232:38632-38651 None:intergenic 35.0%
GTAGTTTCATCTTCAAGCAA+GGG - tig0029232:38653-38672 None:intergenic 35.0%
TGTAGTTTCATCTTCAAGCA+AGG - tig0029232:38654-38673 None:intergenic 35.0%
GAAACTACAGATGACAATGA+TGG + tig0029232:38665-38684 Msa1441180:CDS 35.0%
! ACAGATGACAATGATGGAAT+TGG + tig0029232:38671-38690 Msa1441180:CDS 35.0%
GTGAAATTAAGAAATGGTCC+AGG + tig0029232:38740-38759 Msa1441180:CDS 35.0%
!! CACTTTAAAATCTACACGAG+AGG + tig0029232:38807-38826 Msa1441180:three_prime_UTR 35.0%
ATGCTAGTAACACACTCTTA+TGG + tig0029232:38831-38850 Msa1441180:three_prime_UTR 35.0%
! CACTCTTATGGACATTCTTT+TGG + tig0029232:38843-38862 Msa1441180:three_prime_UTR 35.0%
! AATACTAGCAAAGGTACAGT+AGG - tig0029232:39044-39063 None:intergenic 35.0%
!! TTGTTAGCTTTATGTAAGCC+TGG + tig0029232:39582-39601 Msa1441180:three_prime_UTR 35.0%
!!! TGTCGTTGATGACATCATTT+TGG + tig0029232:39618-39637 Msa1441180:three_prime_UTR 35.0%
TAATGGTCAAGTTCAAGTGA+AGG - tig0029232:39705-39724 None:intergenic 35.0%
CTTGCCCTAAAAGTCATTAA+TGG - tig0029232:39722-39741 None:intergenic 35.0%
ATGAGCAACAATCTTCAATC+TGG - tig0029232:39753-39772 None:intergenic 35.0%
CAAGCTCAAATAGAGAAAGT+TGG + tig0029232:39776-39795 Msa1441180:three_prime_UTR 35.0%
AGCTCAAATAGAGAAAGTTG+GGG + tig0029232:39778-39797 Msa1441180:three_prime_UTR 35.0%
TTGAGTTTCTACAAAGGGTA+AGG - tig0029232:39942-39961 None:intergenic 35.0%
TTACCCTTTGTAGAAACTCA+AGG + tig0029232:39941-39960 Msa1441180:intron 35.0%
TCTCCTTGAGTTTCTACAAA+GGG - tig0029232:39947-39966 None:intergenic 35.0%
TTCTCCTTGAGTTTCTACAA+AGG - tig0029232:39948-39967 None:intergenic 35.0%
AACCTACTTAAGTGAGTTAG+AGG + tig0029232:40101-40120 Msa1441180:intron 35.0%
!! GTTTTGGACCTAAATTTGGT+TGG - tig0029232:40167-40186 None:intergenic 35.0%
GTCAATATTACCTATTCCCT+TGG - tig0029232:40218-40237 None:intergenic 35.0%
GGAATAGGTAATATTGACCA+AGG + tig0029232:40220-40239 Msa1441180:intron 35.0%
AATATTGACCAAGGGTAAGA+TGG + tig0029232:40229-40248 Msa1441180:intron 35.0%
TCAATTTACCATCTTACCCT+TGG - tig0029232:40240-40259 None:intergenic 35.0%
GCTATAAATAGGAGATAGCA+AGG + tig0029232:40267-40286 Msa1441180:intron 35.0%
TACTGAAGATGGAAGATCAA+CGG + tig0029232:40466-40485 Msa1441180:intron 35.0%
!! TAACGCCTCATTTTTAGAGA+GGG - tig0029232:40682-40701 None:intergenic 35.0%
!! ATAACGCCTCATTTTTAGAG+AGG - tig0029232:40683-40702 None:intergenic 35.0%
AGAACCCTATATAAACTAGC+AGG - tig0029232:40752-40771 None:intergenic 35.0%
TTCTCTTTCATACTTCGCAA+AGG - tig0029232:40853-40872 None:intergenic 35.0%
TTCTCAAATCTGTCACTCTT+TGG - tig0029232:40958-40977 None:intergenic 35.0%
!! AGATGACTTGTTTCTTCGAT+GGG - tig0029232:41031-41050 None:intergenic 35.0%
!! AAGATGACTTGTTTCTTCGA+TGG - tig0029232:41032-41051 None:intergenic 35.0%
!! GCCAAATATTGGTTTCTGAT+TGG + tig0029232:41183-41202 Msa1441180:three_prime_UTR 35.0%
GCCAATCAGAAACCAATATT+TGG - tig0029232:41187-41206 None:intergenic 35.0%
! GAGAAGAAGTATGGTTAGAG+AGG - tig0029232:33185-33204 None:intergenic 40.0%
CTTCTTCTCAGCTTATTTGG+TGG + tig0029232:33196-33215 Msa1441180:five_prime_UTR 40.0%
!! ACTTTTAAGGGAACGCCATT+TGG + tig0029232:33464-33483 Msa1441180:intron 40.0%
ATTCATTTCATGACGCCAAG+TGG + tig0029232:33681-33700 Msa1441180:five_prime_UTR 40.0%
TACTGTGCTCAAACTGAACA+TGG + tig0029232:34161-34180 Msa1441180:intron 40.0%
GACTTGAGAAATGGATGTTG+AGG - tig0029232:34352-34371 None:intergenic 40.0%
! TTTTCCCACAGATACTGATC+CGG - tig0029232:34460-34479 None:intergenic 40.0%
GAAAAGGAATTCTCTCTTGC+TGG + tig0029232:34475-34494 Msa1441180:CDS 40.0%
GCAGTACATACGCAAACAAT+TGG - tig0029232:34601-34620 None:intergenic 40.0%
!! CAAGGAAGAGAAGTATCTTC+AGG - tig0029232:34709-34728 None:intergenic 40.0%
GTAACACATACCTGTTTCCA+TGG - tig0029232:34744-34763 None:intergenic 40.0%
! ACTTTTATGGCCACTGCTAT+TGG + tig0029232:34762-34781 Msa1441180:intron 40.0%
! GTTTTTACCCTTGACTTCTC+GGG + tig0029232:34947-34966 Msa1441180:CDS 40.0%
! TTTTTACCCTTGACTTCTCG+GGG + tig0029232:34948-34967 Msa1441180:CDS 40.0%
! GTTTTTACCCTTGTCTTCTC+GGG + tig0029232:35073-35092 Msa1441180:intron 40.0%
! TTTTTACCCTTGTCTTCTCG+GGG + tig0029232:35074-35093 Msa1441180:intron 40.0%
CACACAAAGGAATGGTCAAA+AGG - tig0029232:35286-35305 None:intergenic 40.0%
! CTTTTGACCATTCCTTTGTG+TGG + tig0029232:35284-35303 Msa1441180:intron 40.0%
CTTTCTACCACACAAAGGAA+TGG - tig0029232:35294-35313 None:intergenic 40.0%
TATCCCGTATAGGTTTATGG+GGG + tig0029232:35359-35378 Msa1441180:CDS 40.0%
CCAAAACTTATCCCACTAAG+TGG - tig0029232:35522-35541 None:intergenic 40.0%
! CCACTTAGTGGGATAAGTTT+TGG + tig0029232:35519-35538 Msa1441180:intron 40.0%
!! CTTAGTGGGATAAGTTTTGG+TGG + tig0029232:35522-35541 Msa1441180:intron 40.0%
CCCTTGACAGAAAACTTTAG+TGG - tig0029232:35668-35687 None:intergenic 40.0%
TTTCTCTCCATGCATCTTTG+TGG + tig0029232:35703-35722 Msa1441180:intron 40.0%
! GTTTTGTCCACAAAGATGCA+TGG - tig0029232:35713-35732 None:intergenic 40.0%
CTTTGTGGACAAAACTGTTG+AGG + tig0029232:35718-35737 Msa1441180:intron 40.0%
! GTGGGATTTAGCCTTCTTTA+TGG + tig0029232:35978-35997 Msa1441180:intron 40.0%
! TAATCTCATGATGGAGCTTG+TGG + tig0029232:36058-36077 Msa1441180:CDS 40.0%
TAAAGGGAGTTGGCAATACT+TGG - tig0029232:36166-36185 None:intergenic 40.0%
CATAAGTTGTTGCTGGAATC+TGG + tig0029232:36270-36289 Msa1441180:intron 40.0%
! TATTCTAGCCTCTAGCTTGT+AGG + tig0029232:36305-36324 Msa1441180:intron 40.0%
!! TGTTTTTAAGGGGTTGTCAC+AGG + tig0029232:36575-36594 Msa1441180:intron 40.0%
GTAGTTGAAATTCCCAGCTT+TGG - tig0029232:36674-36693 None:intergenic 40.0%
!!! CTGGTTACTTTTGAGCAACA+TGG + tig0029232:36958-36977 Msa1441180:intron 40.0%
TCTCATCTCAGAATCCTATG+CGG + tig0029232:37426-37445 Msa1441180:CDS 40.0%
GTTAAATACCTCATCCACAC+CGG - tig0029232:37720-37739 None:intergenic 40.0%
CTGAATAACTAGTAGTGTGG+AGG - tig0029232:37830-37849 None:intergenic 40.0%
GCACTGAATAACTAGTAGTG+TGG - tig0029232:37833-37852 None:intergenic 40.0%
TAGAGGTTTCAGGCAAGTTA+AGG - tig0029232:38157-38176 None:intergenic 40.0%
CAGACATGATTAGAGGTTTC+AGG - tig0029232:38167-38186 None:intergenic 40.0%
CTGAAACCTCTAATCATGTC+TGG + tig0029232:38165-38184 Msa1441180:intron 40.0%
GAAACCTCTAATCATGTCTG+GGG + tig0029232:38167-38186 Msa1441180:intron 40.0%
AAAGATAACCTGCACACTTG+CGG - tig0029232:38708-38727 None:intergenic 40.0%
TCAATGTGTAGGAGGAATGT+TGG - tig0029232:38993-39012 None:intergenic 40.0%
CATTCCTCCTACACATTGAA+CGG + tig0029232:38994-39013 Msa1441180:three_prime_UTR 40.0%
!! AAAAGCACCGTTCAATGTGT+AGG - tig0029232:39004-39023 None:intergenic 40.0%
GATAGACAAAGTTCGAAGAG+TGG + tig0029232:39175-39194 Msa1441180:three_prime_UTR 40.0%
AACAATTATGTGCGCCTACA+AGG + tig0029232:39337-39356 Msa1441180:three_prime_UTR 40.0%
ATCAACGACATAAGAAAGCC+AGG - tig0029232:39608-39627 None:intergenic 40.0%
!!! GACTTTTAGGGCAAGCTAAA+TGG + tig0029232:39727-39746 Msa1441180:three_prime_UTR 40.0%
AGGTGAAGATTGGGAAAATG+TGG - tig0029232:39922-39941 None:intergenic 40.0%
CAAAGGGTAAGGTGAAGATT+GGG - tig0029232:39931-39950 None:intergenic 40.0%
ACAAAGGGTAAGGTGAAGAT+TGG - tig0029232:39932-39951 None:intergenic 40.0%
CTCCTCTAACTCACTTAAGT+AGG - tig0029232:40106-40125 None:intergenic 40.0%
AAGCAAGGCCAACCAAATTT+AGG + tig0029232:40156-40175 Msa1441180:intron 40.0%
AAAAAGGACACCAAGGGAAT+AGG + tig0029232:40205-40224 Msa1441180:intron 40.0%
AAGCTTCTTCACACTTGGAA+TGG - tig0029232:40443-40462 None:intergenic 40.0%
AGATGTAGAAATTGGGGGAA+AGG + tig0029232:40511-40530 Msa1441180:intron 40.0%
! AAGCTCCCTCTCTAAAAATG+AGG + tig0029232:40674-40693 Msa1441180:intron 40.0%
GTCATGTCAGAATACTGTGA+AGG + tig0029232:40816-40835 Msa1441180:intron 40.0%
AGATGAAAAGAAGCCGAAGA+AGG + tig0029232:40891-40910 Msa1441180:three_prime_UTR 40.0%
GATGAAAAGAAGCCGAAGAA+GGG + tig0029232:40892-40911 Msa1441180:three_prime_UTR 40.0%
! TTGCGGCTTTGTCTTCTTAA+GGG + tig0029232:41000-41019 Msa1441180:three_prime_UTR 40.0%
! CTTCTCAGCTTATTTGGTGG+TGG + tig0029232:33199-33218 Msa1441180:five_prime_UTR 45.0%
TGGTAGCTTAGCTCAGACTT+TGG + tig0029232:33222-33241 Msa1441180:five_prime_UTR 45.0%
GGCTTGGGAACAGACAAAAA+AGG - tig0029232:33316-33335 None:intergenic 45.0%
ATAACCCGGATCAGTATCTG+TGG + tig0029232:34452-34471 Msa1441180:CDS 45.0%
TAACCCGGATCAGTATCTGT+GGG + tig0029232:34453-34472 Msa1441180:CDS 45.0%
TTTCCCACAGATACTGATCC+GGG - tig0029232:34459-34478 None:intergenic 45.0%
GGATCAGTATCTGTGGGAAA+AGG + tig0029232:34459-34478 Msa1441180:CDS 45.0%
TTGCTGGTAGAACCTACCAA+AGG + tig0029232:34491-34510 Msa1441180:CDS 45.0%
CTCTAAATCCTGCCTTTGGT+AGG - tig0029232:34506-34525 None:intergenic 45.0%
CTACCAAAGGCAGGATTTAG+AGG + tig0029232:34504-34523 Msa1441180:CDS 45.0%
TTGCCTCTAAATCCTGCCTT+TGG - tig0029232:34510-34529 None:intergenic 45.0%
ACACTTCAAGGTATAGCCTC+TGG - tig0029232:34662-34681 None:intergenic 45.0%
GAGAATTACAGCCGCTTCAT+TGG - tig0029232:34909-34928 None:intergenic 45.0%
AACTTACTTCGTGCCAACCA+AGG - tig0029232:35003-35022 None:intergenic 45.0%
!! AGATTGTGGTGTCGCATTTG+AGG + tig0029232:35323-35342 Msa1441180:CDS 45.0%
ACCTCCCCCATAAACCTATA+CGG - tig0029232:35366-35385 None:intergenic 45.0%
TCCAGCAATAGAAGGGTCTT+CGG - tig0029232:36006-36025 None:intergenic 45.0%
AGACCCTTCTATTGCTGGAA+TGG + tig0029232:36007-36026 Msa1441180:CDS 45.0%
AATCCGGCTTCCAAAGTTCA+CGG + tig0029232:36091-36110 Msa1441180:CDS 45.0%
!! AGAGAGAGTACCGTGAACTT+TGG - tig0029232:36104-36123 None:intergenic 45.0%
CAATACTTGGCATCCACACA+GGG - tig0029232:36153-36172 None:intergenic 45.0%
TTCAGCTCGACTGTCCAAAT+TGG + tig0029232:36778-36797 Msa1441180:intron 45.0%
GAGATGAGATCAGAGTGATG+CGG - tig0029232:37415-37434 None:intergenic 45.0%
ATAAAAGAATTGTGGCCGGG+AGG - tig0029232:37594-37613 None:intergenic 45.0%
CAATAGAGACTTGAGGAGGA+CGG - tig0029232:37649-37668 None:intergenic 45.0%
TCAGCAATAGAGACTTGAGG+AGG - tig0029232:37653-37672 None:intergenic 45.0%
! GGGGATTTGAAACTTGGTTC+CGG + tig0029232:37698-37717 Msa1441180:CDS 45.0%
! TTTGAAACTTGGTTCCGGTG+TGG + tig0029232:37703-37722 Msa1441180:CDS 45.0%
GTTTCAGGCAAGTTAAGGCT+AGG - tig0029232:38152-38171 None:intergenic 45.0%
ACGAGATTCTCTCTAGTCTG+CGG + tig0029232:38441-38460 Msa1441180:CDS 45.0%
AAAGTTCGAAGAGTGGCTAG+TGG + tig0029232:39182-39201 Msa1441180:three_prime_UTR 45.0%
CAAATAGAGAAAGTTGGGGC+AGG + tig0029232:39782-39801 Msa1441180:three_prime_UTR 45.0%
GCAGGTGTTCTTCATTTAGG+AGG + tig0029232:39800-39819 Msa1441180:three_prime_UTR 45.0%
TGCTGATGATAAGCTCTCTC+AGG + tig0029232:39853-39872 Msa1441180:three_prime_UTR 45.0%
! ATGGTGATTTGTGGCGTGAA+GGG - tig0029232:40345-40364 None:intergenic 45.0%
! AATGGTGATTTGTGGCGTGA+AGG - tig0029232:40346-40365 None:intergenic 45.0%
TGAAGATGGAAGATCAACGG+AGG + tig0029232:40469-40488 Msa1441180:intron 45.0%
ATGGAAGATCAACGGAGGTT+AGG + tig0029232:40474-40493 Msa1441180:intron 45.0%
TGGAAGATCAACGGAGGTTA+GGG + tig0029232:40475-40494 Msa1441180:intron 45.0%
GAGTGACAGATTTGAGAAGC+TGG + tig0029232:40960-40979 Msa1441180:three_prime_UTR 45.0%
TGACAGATTTGAGAAGCTGG+AGG + tig0029232:40963-40982 Msa1441180:three_prime_UTR 45.0%
! CTTGCGGCTTTGTCTTCTTA+AGG + tig0029232:40999-41018 Msa1441180:three_prime_UTR 45.0%
!!! TTTTTAATCATTTTATAAAT+CGG + tig0029232:35767-35786 Msa1441180:intron 5.0%
!!! ATAAAGATTTTTTTTTTTTT+TGG + tig0029232:36702-36721 Msa1441180:intron 5.0%
!!! TAAAGATTTTTTTTTTTTTT+GGG + tig0029232:36703-36722 Msa1441180:intron 5.0%
AGAGGGAAAGAAAGGACAGC+TGG + tig0029232:33061-33080 Msa1441180:five_prime_UTR 50.0%
AAAGAAAGGACAGCTGGCTG+AGG + tig0029232:33067-33086 Msa1441180:five_prime_UTR 50.0%
!! GCTGAGGTGTTTGGTGTTCT+TGG + tig0029232:33083-33102 Msa1441180:five_prime_UTR 50.0%
!! CTCAGCTTATTTGGTGGTGG+TGG + tig0029232:33202-33221 Msa1441180:five_prime_UTR 50.0%
ATTTCGTTATTCGCCCTCCC+AGG + tig0029232:33741-33760 Msa1441180:CDS 50.0%
ACTTTGCCACATACACAGGG+CGG + tig0029232:34426-34445 Msa1441180:intron 50.0%
TATAGTCCGCCCTGTGTATG+TGG - tig0029232:34435-34454 None:intergenic 50.0%
TGGTAGAACCTACCAAAGGC+AGG + tig0029232:34495-34514 Msa1441180:CDS 50.0%
TAGGGCAGATGCCAATGAAG+CGG + tig0029232:34895-34914 Msa1441180:CDS 50.0%
GATGGAGACTATGTCAGCCT+TGG + tig0029232:34983-35002 Msa1441180:CDS 50.0%
GAGACTATGTCAGCCTTGGT+TGG + tig0029232:34987-35006 Msa1441180:CDS 50.0%
CCTCCCCCATAAACCTATAC+GGG - tig0029232:35365-35384 None:intergenic 50.0%
AGGTTTATGGGGGAGGTCAA+TGG + tig0029232:35369-35388 Msa1441180:CDS 50.0%
GGTTTATGGGGGAGGTCAAT+GGG + tig0029232:35370-35389 Msa1441180:CDS 50.0%
ATGCAACCAACCCCACTTAG+TGG + tig0029232:35507-35526 Msa1441180:intron 50.0%
TGCAACCAACCCCACTTAGT+GGG + tig0029232:35508-35527 Msa1441180:intron 50.0%
CTTATCCCACTAAGTGGGGT+TGG - tig0029232:35516-35535 None:intergenic 50.0%
GGTCTTCGGCTCCATAAAGA+AGG - tig0029232:35992-36011 None:intergenic 50.0%
! GTACCGTGAACTTTGGAAGC+CGG - tig0029232:36097-36116 None:intergenic 50.0%
GCAATACTTGGCATCCACAC+AGG - tig0029232:36154-36173 None:intergenic 50.0%
! AGCCTCTAGCTTGTAGGACT+TGG + tig0029232:36311-36330 Msa1441180:intron 50.0%
CACCAAGTCCTACAAGCTAG+AGG - tig0029232:36316-36335 None:intergenic 50.0%
TGGCTGTACAATACATGCGG+CGG + tig0029232:37082-37101 Msa1441180:CDS 50.0%
ATGGCGACCATAATTCCTCC+CGG + tig0029232:37576-37595 Msa1441180:CDS 50.0%
ATTGTGGCCGGGAGGAATTA+TGG - tig0029232:37586-37605 None:intergenic 50.0%
AGCTGCACTTATGAGAAGCC+TGG + tig0029232:37931-37950 Msa1441180:intron 50.0%
ACCTCTAATCATGTCTGGGG+CGG + tig0029232:38170-38189 Msa1441180:intron 50.0%
CTCCCCTGACTGATGTAGTA+GGG + tig0029232:38552-38571 Msa1441180:intron 50.0%
CACCCTACTACATCAGTCAG+GGG - tig0029232:38557-38576 None:intergenic 50.0%
GCACCCTACTACATCAGTCA+GGG - tig0029232:38558-38577 None:intergenic 50.0%
AGCACCGTTCAATGTGTAGG+AGG - tig0029232:39001-39020 None:intergenic 50.0%
! AGCTTTATGTAAGCCTGGCC+TGG + tig0029232:39587-39606 Msa1441180:three_prime_UTR 50.0%
GGGGCAGGTGTTCTTCATTT+AGG + tig0029232:39797-39816 Msa1441180:three_prime_UTR 50.0%
! TGGTGATTTGTGGCGTGAAG+GGG - tig0029232:40344-40363 None:intergenic 50.0%
!! ACACAGGGCGGACTATAACC+CGG + tig0029232:34438-34457 Msa1441180:intron 55.0%
GTGCAGCTCAAGAATGCCAG+AGG + tig0029232:34643-34662 Msa1441180:intron 55.0%
TCGGGGTCAGGCTTATCTGA+TGG + tig0029232:34965-34984 Msa1441180:CDS 55.0%
TCGGGGTCAGGCTTATCTGA+TGG + tig0029232:34965-34984 Msa1441180:CDS 55.0%
CCCGTATAGGTTTATGGGGG+AGG + tig0029232:35362-35381 Msa1441180:CDS 55.0%
GGTCAATGGGCGCAGTTACT+AGG + tig0029232:35383-35402 Msa1441180:CDS 55.0%
GCCGAAGACCCTTCTATTGC+TGG + tig0029232:36002-36021 Msa1441180:CDS 55.0%
TCTGTGCGTGTATCCCTGTG+TGG + tig0029232:36137-36156 Msa1441180:intron 55.0%
GGCTGTACAATACATGCGGC+GGG + tig0029232:37083-37102 Msa1441180:CDS 55.0%
!! GCGGCGGGTTATTGAGAAGA+AGG + tig0029232:37098-37117 Msa1441180:CDS 55.0%
TAGAGACTTGAGGAGGACGG+AGG - tig0029232:37646-37665 None:intergenic 55.0%
ACTTGGTTCCGGTGTGGATG+AGG + tig0029232:37709-37728 Msa1441180:CDS 55.0%
TCCGCCCCAGACATGATTAG+AGG - tig0029232:38174-38193 None:intergenic 55.0%
GCTCCCCTGACTGATGTAGT+AGG + tig0029232:38551-38570 Msa1441180:intron 55.0%
GGCACCCTACTACATCAGTC+AGG - tig0029232:38559-38578 None:intergenic 55.0%
GCACACTTGCGGCTTCATCA+GGG - tig0029232:38697-38716 None:intergenic 55.0%
TGCACACTTGCGGCTTCATC+AGG - tig0029232:38698-38717 None:intergenic 55.0%
TGATGAAGCCGCAAGTGTGC+AGG + tig0029232:38697-38716 Msa1441180:CDS 55.0%
CGACATAAGAAAGCCAGGCC+AGG - tig0029232:39603-39622 None:intergenic 55.0%
GCGTGAAGGGGTGAAGTTTG+TGG - tig0029232:40332-40351 None:intergenic 55.0%
! GGACAGCTGGCTGAGGTGTT+TGG + tig0029232:33074-33093 Msa1441180:five_prime_UTR 60.0%
ACCCTTGACTTCTCGGGGTC+AGG + tig0029232:34953-34972 Msa1441180:CDS 60.0%
GCCTGACCCCGAGAAGTCAA+GGG - tig0029232:34957-34976 None:intergenic 60.0%
AGCCTGACCCCGAGAAGTCA+AGG - tig0029232:34958-34977 None:intergenic 60.0%
ACCCTTGTCTTCTCGGGGTC+AGG + tig0029232:35079-35098 Msa1441180:intron 60.0%
GCCTGACCCCGAGAAGACAA+GGG - tig0029232:35083-35102 None:intergenic 60.0%
AGCCTGACCCCGAGAAGACA+AGG - tig0029232:35084-35103 None:intergenic 60.0%
AGGCTCTCAGCAGACGCTTG+CGG + tig0029232:40983-41002 Msa1441180:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0029232 gene 33033 41283 33033 ID=Msa1441180;Name=Msa1441180
tig0029232 mRNA 33033 41283 33033 ID=Msa1441180-mRNA-1;Parent=Msa1441180;Name=Msa1441180-mRNA-1;_AED=0.08;_eAED=0.08;_QI=423|0.91|0.92|1|0.91|0.84|13|1551|400
tig0029232 exon 33033 33272 33033 ID=Msa1441180-mRNA-1:exon:12646;Parent=Msa1441180-mRNA-1
tig0029232 exon 33539 33762 33539 ID=Msa1441180-mRNA-1:exon:12647;Parent=Msa1441180-mRNA-1
tig0029232 exon 34444 34525 34444 ID=Msa1441180-mRNA-1:exon:12648;Parent=Msa1441180-mRNA-1
tig0029232 exon 34649 34752 34649 ID=Msa1441180-mRNA-1:exon:12649;Parent=Msa1441180-mRNA-1
tig0029232 exon 34889 35015 34889 ID=Msa1441180-mRNA-1:exon:12650;Parent=Msa1441180-mRNA-1
tig0029232 exon 35310 35404 35310 ID=Msa1441180-mRNA-1:exon:12651;Parent=Msa1441180-mRNA-1
tig0029232 exon 35989 36112 35989 ID=Msa1441180-mRNA-1:exon:12652;Parent=Msa1441180-mRNA-1
tig0029232 exon 37075 37155 37075 ID=Msa1441180-mRNA-1:exon:12653;Parent=Msa1441180-mRNA-1
tig0029232 exon 37349 37447 37349 ID=Msa1441180-mRNA-1:exon:12654;Parent=Msa1441180-mRNA-1
tig0029232 exon 37551 37730 37551 ID=Msa1441180-mRNA-1:exon:12655;Parent=Msa1441180-mRNA-1
tig0029232 exon 38431 38565 38431 ID=Msa1441180-mRNA-1:exon:12656;Parent=Msa1441180-mRNA-1
tig0029232 exon 38647 39874 38647 ID=Msa1441180-mRNA-1:exon:12657;Parent=Msa1441180-mRNA-1
tig0029232 exon 40826 41283 40826 ID=Msa1441180-mRNA-1:exon:12658;Parent=Msa1441180-mRNA-1
tig0029232 five_prime_UTR 33033 33272 33033 ID=Msa1441180-mRNA-1:five_prime_utr;Parent=Msa1441180-mRNA-1
tig0029232 five_prime_UTR 33539 33721 33539 ID=Msa1441180-mRNA-1:five_prime_utr;Parent=Msa1441180-mRNA-1
tig0029232 CDS 33722 33762 33722 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 34444 34525 34444 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 34649 34752 34649 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 34889 35015 34889 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 35310 35404 35310 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 35989 36112 35989 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 37075 37155 37075 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 37349 37447 37349 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 37551 37730 37551 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 38431 38565 38431 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 CDS 38647 38781 38647 ID=Msa1441180-mRNA-1:cds;Parent=Msa1441180-mRNA-1
tig0029232 three_prime_UTR 38782 39874 38782 ID=Msa1441180-mRNA-1:three_prime_utr;Parent=Msa1441180-mRNA-1
tig0029232 three_prime_UTR 40826 41283 40826 ID=Msa1441180-mRNA-1:three_prime_utr;Parent=Msa1441180-mRNA-1
Gene Sequence

>Msa1441180

ATGATTGAGCAATTCATCAATTTCGTTATTCGCCCTCCCAGGGCGGACTATAACCCGGATCAGTATCTGTGGGAAAAGGAATTCTCTCTTGCTGGTAGAACCTACCAAAGGCAGGATTTAGAGCTCAAGAATGCCAGAGGCTATACCTTGAAGTGTAGTCATTATCTCCCTTTTCCTTTTCCTGAAGATACTTCTCTTCCTTGTGTTATATATTGCCATGGAAACAGTGGATGTAGGGCAGATGCCAATGAAGCGGCTGTAATTCTCTTGCCATCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAGACTATGTCAGCCTTGGTTGGCACGAAAAAGATGATCTGAAGATTGTGGTGTCGCATTTGAGGAGCAACAAACAAATATCCCGTATAGGTTTATGGGGGAGGTCAATGGGCGCAGTTACTAGCCTTCTTTATGGAGCCGAAGACCCTTCTATTGCTGGAATGGTATTGGATAGCGCCTTTTCAAACTTATATAATCTCATGATGGAGCTTGTGGACGTTTATAAAATCCGGCTTCCAAAGTTCACGGTTAAAATGGCTGTACAATACATGCGGCGGGTTATTGAGAAGAAGGCAAAGTTTGATATTATGAAATTGAACTGTGTTCTGGTTGCTCCGAAGACATTCATTCCTGTTTTATTTGGACATGCAAGTGATGACAAATTCATTCAGCCGCATCACTCTGATCTCATCTCAGAATCCTATGCGGGTGATAAAAATATCATTAAATTTGATGGCGACCATAATTCCTCCCGGCCACAATTCTTTTATGATTCAGTTTCCATTTTCTTCTACAATGTCCTCCGTCCTCCTCAAGTCTCTATTGCTGAAAAGCTCGAGAAATATTATGATTTAGGGGATTTGAAACTTGGTTCCGGTGTGGATGAGAGCGTATTATACGAGATTCTCTCTAGTCTGCGGTCTGCAACTACTGATGCTGCAAGTTCATCTTCTACATTTCCAACAATATCTGCAACAAAATCAGTTAGCGAACTTCTTTCAGAAGTTGCTCCCCTGACTGATGCACCCTTGCTTGAAGATGAAACTACAGATGACAATGATGGAATTGGCCCTGATGAAGCCGCAAGTGTGCAGGTTATCTTTATAGAATTGTCTGTGAAATTAAGAAATGGTCCAGGAATTTTATTTTACATGTAG
Protein sequence

>Msa1441180

MIEQFINFVIRPPRADYNPDQYLWEKEFSLAGRTYQRQDLELKNARGYTLKCSHYLPFPFPEDTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKIVVSHLRSNKQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLYNLMMELVDVYKIRLPKFTVKMAVQYMRRVIEKKAKFDIMKLNCVLVAPKTFIPVLFGHASDDKFIQPHHSDLISESYAGDKNIIKFDGDHNSSRPQFFYDSVSIFFYNVLRPPQVSIAEKLEKYYDLGDLKLGSGVDESVLYEILSSLRSATTDAASSSSTFPTISATKSVSELLSEVAPLTDAPLLEDETTDDNDGIGPDEAASVQVIFIELSVKLRNGPGILFYM*