Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174610 | XP_013444458.1 | 96.170 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 3.12e-166 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174610 | sp|Q9C5D7|CAMT3_ARATH | 61.947 | 226 | 85 | 1 | 10 | 235 | 8 | 232 | 5.01e-102 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174610 | I3SHI5 | 96.170 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 1.49e-166 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1174610 | Msa1234940 | 0.911879 | 3.687453e-83 | -8.615850e-47 |
| Msa1174610 | Msa1234950 | 0.858243 | 9.419303e-63 | -8.615850e-47 |
| Msa1174610 | Msa1276740 | 0.884672 | 1.570138e-71 | -8.615850e-47 |
| Msa1174610 | Msa1315040 | 0.912383 | 2.073768e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174610 | MtrunA17_Chr8g0344401 | 96.170 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 2.87e-170 | 468 |
| Msa1174610 | MtrunA17_Chr8g0389361 | 72.489 | 229 | 62 | 1 | 5 | 233 | 11 | 238 | 4.69e-110 | 316 |
| Msa1174610 | MtrunA17_Chr6g0487981 | 68.610 | 223 | 69 | 1 | 11 | 233 | 15 | 236 | 5.63e-103 | 298 |
| Msa1174610 | MtrunA17_Chr4g0053331 | 55.603 | 232 | 103 | 0 | 2 | 233 | 10 | 241 | 1.61e-94 | 276 |
| Msa1174610 | MtrunA17_Chr4g0044581 | 57.522 | 226 | 96 | 0 | 8 | 233 | 20 | 245 | 5.21e-93 | 273 |
| Msa1174610 | MtrunA17_Chr4g0053031 | 56.502 | 223 | 97 | 0 | 11 | 233 | 24 | 246 | 6.12e-90 | 265 |
| Msa1174610 | MtrunA17_Chr4g0053241 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 3.77e-82 | 245 |
| Msa1174610 | MtrunA17_Chr4g0053021 | 56.140 | 228 | 100 | 0 | 8 | 235 | 19 | 246 | 6.64e-81 | 242 |
| Msa1174610 | MtrunA17_Chr4g0051041 | 53.571 | 224 | 101 | 2 | 11 | 232 | 5 | 227 | 3.03e-79 | 237 |
| Msa1174610 | MtrunA17_Chr2g0312921 | 39.631 | 217 | 121 | 4 | 17 | 233 | 91 | 297 | 2.09e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174610 | AT4G26220.1 | 61.947 | 226 | 85 | 1 | 10 | 235 | 8 | 232 | 5.09e-103 | 298 |
| Msa1174610 | AT4G34050.1 | 57.080 | 226 | 97 | 0 | 8 | 233 | 32 | 257 | 5.95e-92 | 271 |
| Msa1174610 | AT4G34050.3 | 57.080 | 226 | 97 | 0 | 8 | 233 | 59 | 284 | 6.03e-92 | 272 |
| Msa1174610 | AT1G67980.1 | 54.425 | 226 | 97 | 3 | 10 | 233 | 9 | 230 | 5.10e-80 | 240 |
| Msa1174610 | AT1G24735.1 | 52.863 | 227 | 101 | 5 | 10 | 233 | 15 | 238 | 1.34e-75 | 229 |
| Msa1174610 | AT1G67990.1 | 50.885 | 226 | 106 | 3 | 10 | 233 | 9 | 231 | 8.24e-73 | 221 |
| Msa1174610 | AT1G24735.2 | 43.165 | 278 | 101 | 5 | 10 | 233 | 15 | 289 | 1.05e-67 | 211 |
| Msa1174610 | AT1G24735.3 | 53.591 | 181 | 80 | 3 | 54 | 233 | 16 | 193 | 2.81e-63 | 196 |
| Msa1174610 | AT1G67980.2 | 49.091 | 165 | 80 | 2 | 69 | 233 | 2 | 162 | 4.62e-47 | 154 |
| Msa1174610 | AT3G61990.1 | 39.512 | 205 | 114 | 4 | 29 | 233 | 95 | 289 | 9.68e-47 | 157 |
| Msa1174610 | AT3G62000.1 | 37.073 | 205 | 122 | 3 | 29 | 233 | 80 | 277 | 4.11e-45 | 152 |
| Msa1174610 | AT4G34050.2 | 53.279 | 122 | 57 | 0 | 112 | 233 | 25 | 146 | 5.01e-41 | 137 |
| Msa1174610 | AT3G62000.2 | 35.385 | 195 | 119 | 3 | 29 | 223 | 80 | 267 | 1.61e-37 | 134 |
Find 51 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8_1:-5712382 | Msa1174610:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8_1:-5713097 | Msa1174610:CDS |
| TAACACAACATAGGAAAATA+AGG | 0.329232 | 8_1:+5709709 | None:intergenic |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8_1:-5712412 | Msa1174610:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8_1:-5709971 | Msa1174610:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8_1:-5709901 | Msa1174610:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8_1:-5709933 | Msa1174610:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8_1:+5712381 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8_1:-5709902 | Msa1174610:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8_1:+5710580 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8_1:-5710695 | Msa1174610:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8_1:+5712270 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8_1:-5712381 | Msa1174610:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8_1:-5709749 | Msa1174610:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8_1:-5709771 | Msa1174610:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8_1:+5709861 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8_1:+5710589 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8_1:-5709930 | Msa1174610:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8_1:-5712282 | Msa1174610:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8_1:-5709884 | Msa1174610:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8_1:+5713107 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8_1:-5709765 | Msa1174610:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8_1:-5712393 | Msa1174610:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8_1:+5713108 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8_1:+5709887 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8_1:-5712411 | Msa1174610:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8_1:-5712277 | Msa1174610:intron |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8_1:-5709857 | Msa1174610:CDS |
| ATGTTTATCAGCATCAACAT+AGG | 0.544072 | 8_1:+5709980 | None:intergenic |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8_1:-5713290 | Msa1174610:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8_1:+5713118 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8_1:-5709900 | Msa1174610:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8_1:+5709943 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8_1:-5710667 | Msa1174610:CDS |
| ATTATGTATGATTAGTGTGG+TGG | 0.558384 | 8_1:-5709575 | Msa1174610:three_prime_UTR |
| CACTAATCATACATAATCAA+AGG | 0.559292 | 8_1:+5709581 | None:intergenic |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8_1:-5712394 | Msa1174610:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8_1:+5709886 | None:intergenic |
| ATTCAACCATAACACAACAT+AGG | 0.564400 | 8_1:+5709700 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8_1:-5713274 | Msa1174610:CDS |
| TGTTTCGTTTGATGTCGAGA+AGG | 0.567913 | 8_1:-5709536 | Msa1174610:three_prime_UTR |
| TTGATTATGTATGATTAGTG+TGG | 0.584545 | 8_1:-5709578 | Msa1174610:three_prime_UTR |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8_1:-5709956 | Msa1174610:CDS |
| ACTTTATCAACTATAAGTTG+TGG | 0.595815 | 8_1:-5709620 | Msa1174610:three_prime_UTR |
| GTTTCGTTTGATGTCGAGAA+GGG | 0.599932 | 8_1:-5709535 | Msa1174610:three_prime_UTR |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8_1:-5709897 | Msa1174610:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8_1:+5712382 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8_1:-5713275 | Msa1174610:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8_1:+5713070 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8_1:-5713261 | Msa1174610:intron |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8_1:+5712289 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | - | chr8_1:5709915-5709934 | Msa1174610:CDS | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | - | chr8_1:5710018-5710037 | Msa1174610:intron | 0.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | - | chr8_1:5709677-5709696 | Msa1174610:three_prime_UTR | 10.0% |
| !!! | ATATAAATTATTTTATTTGG+AGG | - | chr8_1:5710021-5710040 | Msa1174610:intron | 10.0% |
| !!! | AAAAAATCTTCCTTTAAAAA+TGG | - | chr8_1:5709525-5709544 | Msa1174610:three_prime_UTR | 15.0% |
| !! | TAAAAATAAATTGAGAGAAA+TGG | - | chr8_1:5709574-5709593 | Msa1174610:three_prime_UTR | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | - | chr8_1:5709654-5709673 | Msa1174610:three_prime_UTR | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | - | chr8_1:5709861-5709880 | Msa1174610:CDS | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | + | chr8_1:5710047-5710066 | None:intergenic | 15.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | + | chr8_1:5710151-5710170 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAAAACAG+CGG | - | chr8_1:5710684-5710703 | Msa1174610:CDS | 15.0% |
| !!! | TTTGTTTTTTGTTTTAGTTT+CGG | + | chr8_1:5711001-5711020 | None:intergenic | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | + | chr8_1:5711259-5711278 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | + | chr8_1:5711506-5711525 | None:intergenic | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | - | chr8_1:5711938-5711957 | Msa1174610:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | - | chr8_1:5712593-5712612 | Msa1174610:intron | 15.0% |
| !!! | TAAAGGAAGATTTTTTTTAC+TGG | + | chr8_1:5709521-5709540 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | + | chr8_1:5709743-5709762 | None:intergenic | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | - | chr8_1:5710331-5710350 | Msa1174610:intron | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | + | chr8_1:5711126-5711145 | None:intergenic | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | + | chr8_1:5711149-5711168 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | - | chr8_1:5711950-5711969 | Msa1174610:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | + | chr8_1:5712504-5712523 | None:intergenic | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | - | chr8_1:5712505-5712524 | Msa1174610:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | + | chr8_1:5712884-5712903 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | - | chr8_1:5712956-5712975 | Msa1174610:intron | 20.0% |
| !!! | ATGTACTATTGTTTTTGTTT+TGG | - | chr8_1:5713216-5713235 | Msa1174610:intron | 20.0% |
| !!! | TGTACTATTGTTTTTGTTTT+GGG | - | chr8_1:5713217-5713236 | Msa1174610:intron | 20.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | + | chr8_1:5709648-5709667 | None:intergenic | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | + | chr8_1:5709835-5709854 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | + | chr8_1:5709836-5709855 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | + | chr8_1:5709945-5709964 | None:intergenic | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | + | chr8_1:5710086-5710105 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | + | chr8_1:5710124-5710143 | None:intergenic | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | - | chr8_1:5710136-5710155 | Msa1174610:intron | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | - | chr8_1:5710270-5710289 | Msa1174610:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | + | chr8_1:5710297-5710316 | None:intergenic | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | - | chr8_1:5710553-5710572 | Msa1174610:intron | 25.0% |
| ! | AAAAATACACATGGATATGT+TGG | + | chr8_1:5710657-5710676 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | - | chr8_1:5710656-5710675 | Msa1174610:CDS | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | + | chr8_1:5711075-5711094 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | + | chr8_1:5711101-5711120 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | + | chr8_1:5711172-5711191 | None:intergenic | 25.0% |
| !! | TTTCTAGTGGAAACAATATT+TGG | + | chr8_1:5711464-5711483 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | - | chr8_1:5711741-5711760 | Msa1174610:intron | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | + | chr8_1:5711752-5711771 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | - | chr8_1:5711777-5711796 | Msa1174610:intron | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | - | chr8_1:5712019-5712038 | Msa1174610:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | + | chr8_1:5712110-5712129 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | + | chr8_1:5712360-5712379 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | - | chr8_1:5712599-5712618 | Msa1174610:intron | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | - | chr8_1:5712764-5712783 | Msa1174610:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | + | chr8_1:5712783-5712802 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | - | chr8_1:5712918-5712937 | Msa1174610:intron | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | - | chr8_1:5712959-5712978 | Msa1174610:intron | 25.0% |
| ! | TAACACAACATAGGAAAATA+AGG | + | chr8_1:5713183-5713202 | None:intergenic | 25.0% |
| !! | TATTTTCCTATGTTGTGTTA+TGG | - | chr8_1:5713183-5713202 | Msa1174610:intron | 25.0% |
| ! | ACTTTATCAACTATAAGTTG+TGG | - | chr8_1:5713269-5713288 | Msa1174610:CDS | 25.0% |
| ! | CACTAATCATACATAATCAA+AGG | + | chr8_1:5713311-5713330 | None:intergenic | 25.0% |
| ! | TTGATTATGTATGATTAGTG+TGG | - | chr8_1:5713311-5713330 | Msa1174610:exon | 25.0% |
| ! | CTTTAAAAATGGTCGAAGTT+GGG | - | chr8_1:5709536-5709555 | Msa1174610:three_prime_UTR | 30.0% |
| TTTAAAAATGGTCGAAGTTG+GGG | - | chr8_1:5709537-5709556 | Msa1174610:three_prime_UTR | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | - | chr8_1:5709599-5709618 | Msa1174610:three_prime_UTR | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | - | chr8_1:5709792-5709811 | Msa1174610:CDS | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | - | chr8_1:5710080-5710099 | Msa1174610:intron | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | + | chr8_1:5710087-5710106 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | - | chr8_1:5710084-5710103 | Msa1174610:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | + | chr8_1:5710122-5710141 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | + | chr8_1:5710123-5710142 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | - | chr8_1:5710477-5710496 | Msa1174610:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | - | chr8_1:5710478-5710497 | Msa1174610:intron | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | - | chr8_1:5710565-5710584 | Msa1174610:intron | 30.0% |
| AAAGTTTGCGATAAAAAGTC+AGG | + | chr8_1:5710722-5710741 | None:intergenic | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | + | chr8_1:5710872-5710891 | None:intergenic | 30.0% | |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | - | chr8_1:5710873-5710892 | Msa1174610:intron | 30.0% |
| GTTTCGCTTTAATATCTCTT+TGG | + | chr8_1:5710899-5710918 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | + | chr8_1:5710998-5711017 | None:intergenic | 30.0% |
| TAGATCAAGTTCAAATCTAG+GGG | + | chr8_1:5711100-5711119 | None:intergenic | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | + | chr8_1:5711102-5711121 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | + | chr8_1:5711143-5711162 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | - | chr8_1:5711176-5711195 | Msa1174610:intron | 30.0% |
| ACTCCGATTTATATGAGAAA+AGG | - | chr8_1:5711394-5711413 | Msa1174610:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | - | chr8_1:5711395-5711414 | Msa1174610:intron | 30.0% | |
| ! | GACCCTTTTCTCATATAAAT+CGG | + | chr8_1:5711400-5711419 | None:intergenic | 30.0% |
| AGAAAAGGGTCATAGTAATT+CGG | - | chr8_1:5711409-5711428 | Msa1174610:intron | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | - | chr8_1:5711653-5711672 | Msa1174610:intron | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | + | chr8_1:5711775-5711794 | None:intergenic | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | - | chr8_1:5712242-5712261 | Msa1174610:intron | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | + | chr8_1:5712312-5712331 | None:intergenic | 30.0% | |
| !! | GCCTAAACTTGTTTATGTTT+TGG | - | chr8_1:5712356-5712375 | Msa1174610:CDS | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | + | chr8_1:5712762-5712781 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | - | chr8_1:5712810-5712829 | Msa1174610:intron | 30.0% |
| ATGTTTATCAGCATCAACAT+AGG | + | chr8_1:5712912-5712931 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | - | chr8_1:5712987-5713006 | Msa1174610:intron | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | - | chr8_1:5712988-5713007 | Msa1174610:intron | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | - | chr8_1:5713047-5713066 | Msa1174610:intron | 30.0% | |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | + | chr8_1:5713052-5713071 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | + | chr8_1:5713053-5713072 | None:intergenic | 30.0% |
| GAAATTTGTCTTGCTTCAAT+TGG | - | chr8_1:5713118-5713137 | Msa1174610:CDS | 30.0% | |
| ATTCAACCATAACACAACAT+AGG | + | chr8_1:5713192-5713211 | None:intergenic | 30.0% | |
| !!! | ACTATTGTTTTTGTTTTGGG+TGG | - | chr8_1:5713220-5713239 | Msa1174610:intron | 30.0% |
| ATTATGTATGATTAGTGTGG+TGG | - | chr8_1:5713314-5713333 | Msa1174610:exon | 30.0% | |
| !! | CCAACTTCGACCATTTTTAA+AGG | + | chr8_1:5709538-5709557 | None:intergenic | 35.0% |
| ! | CCTTTAAAAATGGTCGAAGT+TGG | - | chr8_1:5709535-5709554 | Msa1174610:three_prime_UTR | 35.0% |
| TATGATGGTATATTGCAGAG+TGG | - | chr8_1:5709614-5709633 | Msa1174610:three_prime_UTR | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | - | chr8_1:5709615-5709634 | Msa1174610:three_prime_UTR | 35.0% | |
| ! | ATGATGATTTGAGGTGCAAA+CGG | + | chr8_1:5710240-5710259 | None:intergenic | 35.0% |
| GCAAGATGTATGATGATTTG+AGG | + | chr8_1:5710249-5710268 | None:intergenic | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | + | chr8_1:5710379-5710398 | None:intergenic | 35.0% | |
| ! | CTTTTACCATACATGTGTGT+TGG | - | chr8_1:5710377-5710396 | Msa1174610:intron | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | - | chr8_1:5710612-5710631 | Msa1174610:CDS | 35.0% |
| TCGTACACCAAAAATACACA+TGG | + | chr8_1:5710666-5710685 | None:intergenic | 35.0% | |
| ! | GTGGATTTTCAATTGCATAG+CGG | - | chr8_1:5710804-5710823 | Msa1174610:intron | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | + | chr8_1:5710885-5710904 | None:intergenic | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | + | chr8_1:5710886-5710905 | None:intergenic | 35.0% |
| AGCGAAACAAACATAGTAGA+AGG | - | chr8_1:5710911-5710930 | Msa1174610:intron | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | + | chr8_1:5711044-5711063 | None:intergenic | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | - | chr8_1:5711410-5711429 | Msa1174610:intron | 35.0% | |
| AAAAGGGTCATAGTAATTCG+GGG | - | chr8_1:5711411-5711430 | Msa1174610:intron | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | - | chr8_1:5711471-5711490 | Msa1174610:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | - | chr8_1:5711646-5711665 | Msa1174610:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | + | chr8_1:5711652-5711671 | None:intergenic | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | + | chr8_1:5711691-5711710 | None:intergenic | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | + | chr8_1:5711692-5711711 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | + | chr8_1:5711693-5711712 | None:intergenic | 35.0% | |
| GTCTCACTTATTCACCTAAA+AGG | + | chr8_1:5711794-5711813 | None:intergenic | 35.0% | |
| AAGGTGAATGAGTTAGAAAC+TGG | - | chr8_1:5712038-5712057 | Msa1174610:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | + | chr8_1:5712106-5712125 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | + | chr8_1:5712122-5712141 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | + | chr8_1:5712165-5712184 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | - | chr8_1:5712172-5712191 | Msa1174610:intron | 35.0% | |
| GATCTACAACAACCATACAA+TGG | + | chr8_1:5712187-5712206 | None:intergenic | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | - | chr8_1:5712194-5712213 | Msa1174610:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | + | chr8_1:5712227-5712246 | None:intergenic | 35.0% |
| CTTCCATTCATAAAAAAGGC+TGG | - | chr8_1:5712246-5712265 | Msa1174610:intron | 35.0% | |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | + | chr8_1:5712252-5712271 | None:intergenic | 35.0% |
| TTATCAAGAACTGGTAAAGC+TGG | + | chr8_1:5712303-5712322 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | - | chr8_1:5712449-5712468 | Msa1174610:intron | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | - | chr8_1:5712825-5712844 | Msa1174610:intron | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | - | chr8_1:5712933-5712952 | Msa1174610:intron | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | + | chr8_1:5712949-5712968 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | - | chr8_1:5712989-5713008 | Msa1174610:intron | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | - | chr8_1:5713140-5713159 | Msa1174610:intron | 35.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | - | chr8_1:5710096-5710115 | Msa1174610:intron | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | - | chr8_1:5710280-5710299 | Msa1174610:intron | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | - | chr8_1:5710607-5710626 | Msa1174610:CDS | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | + | chr8_1:5710622-5710641 | None:intergenic | 40.0% | |
| AAACCAATCACATCTCATGC+TGG | - | chr8_1:5710757-5710776 | Msa1174610:intron | 40.0% | |
| !! | AAAAATGGGATAGTGGGTAG+TGG | - | chr8_1:5710785-5710804 | Msa1174610:intron | 40.0% |
| GCCACTTCTAAACATCTAAG+AGG | - | chr8_1:5711040-5711059 | Msa1174610:intron | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | - | chr8_1:5711472-5711491 | Msa1174610:intron | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | + | chr8_1:5711719-5711738 | None:intergenic | 40.0% | |
| AGGTGAATAAGTGAGACGTT+CGG | - | chr8_1:5711797-5711816 | Msa1174610:intron | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | - | chr8_1:5712151-5712170 | Msa1174610:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | + | chr8_1:5712222-5712241 | None:intergenic | 40.0% |
| GACCGAAAAGCTTATGAAGT+AGG | - | chr8_1:5712222-5712241 | Msa1174610:intron | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | - | chr8_1:5712407-5712426 | Msa1174610:intron | 40.0% | |
| ! | CGCATTTTGCCACAACATAA+AGG | + | chr8_1:5712419-5712438 | None:intergenic | 40.0% |
| ATATGGACACGAACACGATA+CGG | - | chr8_1:5712616-5712635 | Msa1174610:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | + | chr8_1:5712751-5712770 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | - | chr8_1:5713124-5713143 | Msa1174610:CDS | 40.0% | |
| TGTTTCGTTTGATGTCGAGA+AGG | - | chr8_1:5713353-5713372 | Msa1174610:five_prime_UTR | 40.0% | |
| GTTTCGTTTGATGTCGAGAA+GGG | - | chr8_1:5713354-5713373 | Msa1174610:five_prime_UTR | 40.0% | |
| AAAAATGGTCGAAGTTGGGG+AGG | - | chr8_1:5709540-5709559 | Msa1174610:three_prime_UTR | 45.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | + | chr8_1:5709774-5709793 | None:intergenic | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | + | chr8_1:5709784-5709803 | None:intergenic | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | + | chr8_1:5709785-5709804 | None:intergenic | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | + | chr8_1:5710386-5710405 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | + | chr8_1:5710603-5710622 | None:intergenic | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | + | chr8_1:5710783-5710802 | None:intergenic | 45.0% |
| TAGTAATTCGGGGTTCAGTC+AGG | - | chr8_1:5711421-5711440 | Msa1174610:intron | 45.0% | |
| GGTGAATAAGTGAGACGTTC+GGG | - | chr8_1:5711798-5711817 | Msa1174610:intron | 45.0% | |
| GTGAATAAGTGAGACGTTCG+GGG | - | chr8_1:5711799-5711818 | Msa1174610:intron | 45.0% | |
| ! | TATGATAACACCCTTTGGGG+TGG | - | chr8_1:5712992-5713011 | Msa1174610:intron | 45.0% |
| GGATCTAGAAGAGCTTCTTC+AGG | + | chr8_1:5713031-5713050 | None:intergenic | 45.0% | |
| AAGAAGCTCTTCTAGATCCC+AGG | - | chr8_1:5713032-5713051 | Msa1174610:intron | 45.0% | |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | + | chr8_1:5710054-5710073 | None:intergenic | 5.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | - | chr8_1:5710053-5710072 | Msa1174610:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | - | chr8_1:5710467-5710486 | Msa1174610:intron | 5.0% |
| GCAGAGTGGGAATTTGACCA+AGG | - | chr8_1:5709628-5709647 | Msa1174610:three_prime_UTR | 50.0% | |
| ! | GTACATAGGGTAGCTTGCAG+TGG | + | chr8_1:5709822-5709841 | None:intergenic | 50.0% |
| CAATCACATCTCATGCTGGC+CGG | - | chr8_1:5710761-5710780 | Msa1174610:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | - | chr8_1:5710771-5710790 | Msa1174610:intron | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | - | chr8_1:5710779-5710798 | Msa1174610:intron | 50.0% | |
| ! | AGCCCGAGTACGATTTCTAG+TGG | + | chr8_1:5711477-5711496 | None:intergenic | 50.0% |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | - | chr8_1:5711665-5711684 | Msa1174610:intron | 50.0% |
| TGCATAATGTATGCAGGGGC+CGG | + | chr8_1:5711687-5711706 | None:intergenic | 50.0% | |
| ACACGACAAGTGTCTGACAC+CGG | - | chr8_1:5712713-5712732 | Msa1174610:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | + | chr8_1:5712735-5712754 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | + | chr8_1:5713005-5713024 | None:intergenic | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | + | chr8_1:5713006-5713025 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | - | chr8_1:5713005-5713024 | Msa1174610:intron | 50.0% |
| ! | TGAAATGCGGGGCCGACTTA+AGG | + | chr8_1:5710111-5710130 | None:intergenic | 55.0% |
| CCATTAGCTGACCCGCATCA+GGG | + | chr8_1:5710510-5710529 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | - | chr8_1:5710508-5710527 | Msa1174610:intron | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | + | chr8_1:5710763-5710782 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | - | chr8_1:5710770-5710789 | Msa1174610:intron | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | - | chr8_1:5710778-5710797 | Msa1174610:intron | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | + | chr8_1:5711685-5711704 | None:intergenic | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | + | chr8_1:5711686-5711705 | None:intergenic | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | - | chr8_1:5712731-5712750 | Msa1174610:intron | 55.0% | |
| !! | CATGGGCACTGACCCTGATG+CGG | - | chr8_1:5710495-5710514 | Msa1174610:intron | 60.0% |
| !! | ATGGGCACTGACCCTGATGC+GGG | - | chr8_1:5710496-5710515 | Msa1174610:intron | 60.0% |
| CCCTGATGCGGGTCAGCTAA+TGG | - | chr8_1:5710507-5710526 | Msa1174610:intron | 60.0% | |
| CCCATTAGCTGACCCGCATC+AGG | + | chr8_1:5710511-5710530 | None:intergenic | 60.0% | |
| TTGTCGTGTCCGACGTCGCA+CGG | + | chr8_1:5712702-5712721 | None:intergenic | 60.0% | |
| GTGTCCGTGCCGTGCGACGT+CGG | - | chr8_1:5712690-5712709 | Msa1174610:intron | 70.0% | |
| GTGTCCGACGTCGCACGGCA+CGG | + | chr8_1:5712697-5712716 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5709518 | 5713393 | 5709518 | ID=Msa1174610;Name=Msa1174610 |
| chr8_1 | mRNA | 5709518 | 5713393 | 5709518 | ID=Msa1174610-mRNA-1;Parent=Msa1174610;Name=Msa1174610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|1|1|1|1|1|5|219|235 |
| chr8_1 | exon | 5709518 | 5710030 | 5709518 | ID=Msa1174610-mRNA-1:exon:1933;Parent=Msa1174610-mRNA-1 |
| chr8_1 | exon | 5710576 | 5710707 | 5710576 | ID=Msa1174610-mRNA-1:exon:1932;Parent=Msa1174610-mRNA-1 |
| chr8_1 | exon | 5712278 | 5712422 | 5712278 | ID=Msa1174610-mRNA-1:exon:1931;Parent=Msa1174610-mRNA-1 |
| chr8_1 | exon | 5713074 | 5713153 | 5713074 | ID=Msa1174610-mRNA-1:exon:1930;Parent=Msa1174610-mRNA-1 |
| chr8_1 | exon | 5713262 | 5713393 | 5713262 | ID=Msa1174610-mRNA-1:exon:1929;Parent=Msa1174610-mRNA-1 |
| chr8_1 | five_prime_UTR | 5713319 | 5713393 | 5713319 | ID=Msa1174610-mRNA-1:five_prime_utr;Parent=Msa1174610-mRNA-1 |
| chr8_1 | CDS | 5713262 | 5713318 | 5713262 | ID=Msa1174610-mRNA-1:cds;Parent=Msa1174610-mRNA-1 |
| chr8_1 | CDS | 5713074 | 5713153 | 5713074 | ID=Msa1174610-mRNA-1:cds;Parent=Msa1174610-mRNA-1 |
| chr8_1 | CDS | 5712278 | 5712422 | 5712278 | ID=Msa1174610-mRNA-1:cds;Parent=Msa1174610-mRNA-1 |
| chr8_1 | CDS | 5710576 | 5710707 | 5710576 | ID=Msa1174610-mRNA-1:cds;Parent=Msa1174610-mRNA-1 |
| chr8_1 | CDS | 5709737 | 5710030 | 5709737 | ID=Msa1174610-mRNA-1:cds;Parent=Msa1174610-mRNA-1 |
| chr8_1 | three_prime_UTR | 5709518 | 5709736 | 5709518 | ID=Msa1174610-mRNA-1:three_prime_utr;Parent=Msa1174610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
