Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234950 | XP_013444458.1 | 97.872 | 235 | 5 | 0 | 1 | 235 | 1 | 235 | 1.39e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234950 | sp|Q9C5D7|CAMT3_ARATH | 63.274 | 226 | 82 | 1 | 10 | 235 | 8 | 232 | 2.15e-104 | 304 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234950 | I3SHI5 | 97.872 | 235 | 5 | 0 | 1 | 235 | 1 | 235 | 6.66e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234940 | Msa1234950 | 0.924595 | 5.708503e-90 | -8.615850e-47 |
| Msa1234950 | Msa1276740 | 0.905748 | 3.090537e-80 | -8.615850e-47 |
| Msa1234950 | Msa1315040 | 0.914876 | 1.144818e-84 | -8.615850e-47 |
| Msa1174610 | Msa1234950 | 0.858243 | 9.419303e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234950 | MtrunA17_Chr8g0344401 | 97.872 | 235 | 5 | 0 | 1 | 235 | 1 | 235 | 1.28e-173 | 476 |
| Msa1234950 | MtrunA17_Chr8g0389361 | 73.362 | 229 | 60 | 1 | 5 | 233 | 11 | 238 | 8.88e-111 | 318 |
| Msa1234950 | MtrunA17_Chr6g0487981 | 69.955 | 223 | 66 | 1 | 11 | 233 | 15 | 236 | 3.59e-105 | 303 |
| Msa1234950 | MtrunA17_Chr4g0053331 | 55.603 | 232 | 103 | 0 | 2 | 233 | 10 | 241 | 9.87e-94 | 275 |
| Msa1234950 | MtrunA17_Chr4g0044581 | 58.407 | 226 | 94 | 0 | 8 | 233 | 20 | 245 | 1.86e-93 | 274 |
| Msa1234950 | MtrunA17_Chr4g0053031 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 1.86e-90 | 266 |
| Msa1234950 | MtrunA17_Chr4g0053241 | 57.848 | 223 | 94 | 0 | 11 | 233 | 24 | 246 | 9.32e-83 | 247 |
| Msa1234950 | MtrunA17_Chr4g0053021 | 57.018 | 228 | 98 | 0 | 8 | 235 | 19 | 246 | 1.89e-81 | 243 |
| Msa1234950 | MtrunA17_Chr4g0051041 | 54.464 | 224 | 99 | 2 | 11 | 232 | 5 | 227 | 6.03e-80 | 239 |
| Msa1234950 | MtrunA17_Chr2g0312921 | 41.014 | 217 | 118 | 4 | 17 | 233 | 91 | 297 | 7.40e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234950 | AT4G26220.1 | 63.274 | 226 | 82 | 1 | 10 | 235 | 8 | 232 | 2.19e-105 | 304 |
| Msa1234950 | AT4G34050.1 | 58.407 | 226 | 94 | 0 | 8 | 233 | 32 | 257 | 2.53e-94 | 277 |
| Msa1234950 | AT4G34050.3 | 58.407 | 226 | 94 | 0 | 8 | 233 | 59 | 284 | 2.69e-94 | 278 |
| Msa1234950 | AT1G67980.1 | 55.310 | 226 | 95 | 3 | 10 | 233 | 9 | 230 | 1.23e-80 | 241 |
| Msa1234950 | AT1G24735.1 | 53.744 | 227 | 99 | 5 | 10 | 233 | 15 | 238 | 6.95e-76 | 229 |
| Msa1234950 | AT1G67990.1 | 50.885 | 226 | 106 | 3 | 10 | 233 | 9 | 231 | 4.23e-72 | 219 |
| Msa1234950 | AT1G24735.2 | 43.885 | 278 | 99 | 5 | 10 | 233 | 15 | 289 | 5.11e-68 | 211 |
| Msa1234950 | AT1G24735.3 | 54.696 | 181 | 78 | 3 | 54 | 233 | 16 | 193 | 4.56e-64 | 198 |
| Msa1234950 | AT3G62000.1 | 38.537 | 205 | 119 | 3 | 29 | 233 | 80 | 277 | 9.86e-48 | 159 |
| Msa1234950 | AT3G61990.1 | 40.488 | 205 | 112 | 4 | 29 | 233 | 95 | 289 | 1.64e-47 | 159 |
| Msa1234950 | AT1G67980.2 | 49.091 | 165 | 80 | 2 | 69 | 233 | 2 | 162 | 1.19e-46 | 152 |
| Msa1234950 | AT4G34050.2 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.48e-41 | 139 |
| Msa1234950 | AT3G62000.2 | 36.923 | 195 | 116 | 3 | 29 | 223 | 80 | 267 | 5.20e-40 | 141 |
Find 52 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGTTAA+TGG | 0.191047 | 8_2:+12743827 | Msa1234950:CDS |
| CAGAGACTCTCAAAGAATTA+AGG | 0.315684 | 8_2:+12743128 | Msa1234950:CDS |
| TAACACAACATAGGAAAATA+AGG | 0.329232 | 8_2:-12746510 | None:intergenic |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8_2:+12743797 | Msa1234950:intron |
| CTTAATTCTTTGAGAGTCTC+TGG | 0.339959 | 8_2:-12743127 | None:intergenic |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8_2:+12746248 | Msa1234950:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8_2:+12746318 | Msa1234950:CDS |
| CCCATTAACTGACCCGCATC+AGG | 0.360505 | 8_2:-12743828 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8_2:+12746317 | Msa1234950:CDS |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8_2:+12745523 | Msa1234950:intron |
| TCTAAGAGTTTATCTAGAAC+TGG | 0.410062 | 8_2:-12745638 | None:intergenic |
| CTGATTAAACTGATTAAGAT+TGG | 0.412422 | 8_2:+12746286 | Msa1234950:CDS |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8_2:-12743939 | None:intergenic |
| CCTGATGCGGGTCAGTTAAT+GGG | 0.422080 | 8_2:+12743828 | Msa1234950:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8_2:+12746470 | Msa1234950:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8_2:+12746448 | Msa1234950:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8_2:-12746358 | None:intergenic |
| TTATCTAGAACTGGTAAAGC+TGG | 0.480060 | 8_2:-12745629 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.485903 | 8_2:+12746289 | Msa1234950:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8_2:+12743927 | Msa1234950:CDS |
| TTGAGAGTCTCTGGTTCTCG+TGG | 0.512434 | 8_2:-12743118 | None:intergenic |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8_2:+12746335 | Msa1234950:CDS |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8_2:+12746454 | Msa1234950:CDS |
| ATGGGCACTCACCCTGATGC+GGG | 0.527395 | 8_2:+12743816 | Msa1234950:CDS |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8_2:-12746332 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8_2:+12743798 | Msa1234950:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8_2:+12743932 | Msa1234950:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8_2:+12746362 | Msa1234950:CDS |
| CATGGGCACTCACCCTGATG+CGG | 0.547301 | 8_2:+12743815 | Msa1234950:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8_2:+12742934 | Msa1234950:CDS |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8_2:+12746319 | Msa1234950:CDS |
| TCAGTTTAATCAGCCTCTCA+TGG | 0.551699 | 8_2:-12746276 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8_2:+12745551 | Msa1234950:CDS |
| ATTATGTATGATTAGTGTGG+TGG | 0.558384 | 8_2:+12746644 | Msa1234950:three_prime_UTR |
| CACTAATCATACATAATCAA+AGG | 0.559292 | 8_2:-12746638 | None:intergenic |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8_2:-12746333 | None:intergenic |
| TGGTTCTCGTGGGTAAACGC+TGG | 0.563918 | 8_2:-12743107 | None:intergenic |
| ATTCAACCATAACACAACAT+AGG | 0.564400 | 8_2:-12746519 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8_2:+12742950 | Msa1234950:CDS |
| TGTTTCGTTTGATGTCGAGA+AGG | 0.567913 | 8_2:+12746683 | Msa1234950:three_prime_UTR |
| TGAGAGTCTCTGGTTCTCGT+GGG | 0.576590 | 8_2:-12743117 | None:intergenic |
| TTGATTATGTATGATTAGTG+TGG | 0.584545 | 8_2:+12746641 | Msa1234950:three_prime_UTR |
| ACTTTATCAACTATAAGTTG+TGG | 0.595815 | 8_2:+12746599 | Msa1234950:three_prime_UTR |
| GTTTCGTTTGATGTCGAGAA+GGG | 0.599932 | 8_2:+12746684 | Msa1234950:three_prime_UTR |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8_2:+12746322 | Msa1234950:CDS |
| CCATTAACTGACCCGCATCA+GGG | 0.619047 | 8_2:-12743827 | None:intergenic |
| ATTACTGGAATTACCATGAG+AGG | 0.622324 | 8_2:+12746263 | Msa1234950:CDS |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8_2:-12746239 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8_2:+12742949 | Msa1234950:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8_2:-12743155 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8_2:+12742963 | Msa1234950:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.719153 | 8_2:-12743920 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8_2:12743350-12743369 | Msa1234950:intron | 0.0% |
| !! | TAAAAGAAATTAGTTAATAA+TGG | - | chr8_2:12743386-12743405 | None:intergenic | 10.0% |
| !!! | ATTATTAACTAATTTCTTTT+AGG | + | chr8_2:12743385-12743404 | Msa1234950:intron | 10.0% |
| !! | TCATTATTATTACTTATATT+AGG | + | chr8_2:12743787-12743806 | Msa1234950:intron | 10.0% |
| !!! | AAAAAATCTTCCTTTAAAAA+TGG | + | chr8_2:12742860-12742879 | Msa1234950:five_prime_UTR | 15.0% |
| !! | TAAAAATAAATTGAGAGAAA+TGG | + | chr8_2:12742909-12742928 | Msa1234950:exon | 15.0% |
| !!! | GTTTTTTAGCTTTATTTTTT+TGG | + | chr8_2:12742989-12743008 | Msa1234950:intron | 15.0% |
| !!! | CTTATATTTTTTTAATTAGC+TGG | + | chr8_2:12743012-12743031 | Msa1234950:intron | 15.0% |
| !!! | AATTAGTTAATAATGGAAAA+AGG | - | chr8_2:12743379-12743398 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTTGTTTTAGTTT+CGG | - | chr8_2:12744323-12744342 | None:intergenic | 15.0% |
| !! | ATCATTAAAATGTACATATT+TGG | - | chr8_2:12744471-12744490 | None:intergenic | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8_2:12744581-12744600 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8_2:12744827-12744846 | None:intergenic | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8_2:12745269-12745288 | Msa1234950:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8_2:12745922-12745941 | Msa1234950:intron | 15.0% |
| !!! | TAAAGGAAGATTTTTTTTAC+TGG | - | chr8_2:12742856-12742875 | None:intergenic | 20.0% |
| !!! | TTTTGGTTAATTAAGCAAAT+AGG | - | chr8_2:12743062-12743081 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8_2:12743079-12743098 | None:intergenic | 20.0% |
| !! | TTCAAAGATAACAATTATGA+TGG | - | chr8_2:12743277-12743296 | None:intergenic | 20.0% |
| !! | AAAGATATCATTCCTTTATA+TGG | - | chr8_2:12743478-12743497 | None:intergenic | 20.0% |
| !! | ACAAAATGTATGATGATTTA+AGG | - | chr8_2:12743576-12743595 | None:intergenic | 20.0% |
| !! | TACTTGCAATATAAATTCTA+GGG | - | chr8_2:12743740-12743759 | None:intergenic | 20.0% |
| !! | TTACTTGCAATATAAATTCT+AGG | - | chr8_2:12743741-12743760 | None:intergenic | 20.0% |
| !!! | TAAGCATTTTCCTTTTAAAA+AGG | + | chr8_2:12744195-12744214 | Msa1234950:intron | 20.0% |
| !!! | TTAAATTTTTACTATGGTCT+TGG | - | chr8_2:12744442-12744461 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | - | chr8_2:12744448-12744467 | None:intergenic | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8_2:12745833-12745852 | None:intergenic | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8_2:12745834-12745853 | Msa1234950:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8_2:12746214-12746233 | None:intergenic | 20.0% |
| !!! | ATGTACTATTGTTTTTGTTT+TGG | + | chr8_2:12746546-12746565 | Msa1234950:three_prime_UTR | 20.0% |
| !!! | TGTACTATTGTTTTTGTTTT+GGG | + | chr8_2:12746547-12746566 | Msa1234950:three_prime_UTR | 20.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8_2:12743171-12743190 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8_2:12743172-12743191 | None:intergenic | 25.0% |
| ! | CACAATTATGTCAAAAAGTA+AGG | + | chr8_2:12743193-12743212 | Msa1234950:intron | 25.0% |
| ! | CATAATCTAATTGAAATGCA+GGG | - | chr8_2:12743449-12743468 | None:intergenic | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8_2:12743463-12743482 | Msa1234950:intron | 25.0% |
| ! | ATTACTTTATCATACATGTG+TGG | + | chr8_2:12743674-12743693 | Msa1234950:intron | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8_2:12743873-12743892 | Msa1234950:CDS | 25.0% |
| ! | AAAATGTACATATTTGGACA+AGG | - | chr8_2:12744465-12744484 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8_2:12744494-12744513 | None:intergenic | 25.0% |
| !!! | ATTTCTAGTGGAAACAAATT+TGG | - | chr8_2:12744786-12744805 | None:intergenic | 25.0% |
| ! | TGTATATTATGCAAGGTTTA+AGG | + | chr8_2:12744984-12745003 | Msa1234950:intron | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8_2:12745072-12745091 | Msa1234950:intron | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8_2:12745083-12745102 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8_2:12745108-12745127 | Msa1234950:intron | 25.0% |
| ! | AAAATTGAAATATGCAGTGT+CGG | - | chr8_2:12745164-12745183 | None:intergenic | 25.0% |
| !! | TAATACAATGGTTCTATAGA+TGG | + | chr8_2:12745281-12745300 | Msa1234950:intron | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8_2:12745348-12745367 | Msa1234950:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8_2:12745439-12745458 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8_2:12745689-12745708 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8_2:12745928-12745947 | Msa1234950:intron | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8_2:12746094-12746113 | Msa1234950:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8_2:12746113-12746132 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8_2:12746248-12746267 | Msa1234950:CDS | 25.0% |
| ! | CTGATTAAACTGATTAAGAT+TGG | + | chr8_2:12746286-12746305 | Msa1234950:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8_2:12746289-12746308 | Msa1234950:CDS | 25.0% |
| ! | TAACACAACATAGGAAAATA+AGG | - | chr8_2:12746513-12746532 | None:intergenic | 25.0% |
| !! | TATTTTCCTATGTTGTGTTA+TGG | + | chr8_2:12746513-12746532 | Msa1234950:three_prime_UTR | 25.0% |
| ! | ACTTTATCAACTATAAGTTG+TGG | + | chr8_2:12746599-12746618 | Msa1234950:three_prime_UTR | 25.0% |
| ! | CACTAATCATACATAATCAA+AGG | - | chr8_2:12746641-12746660 | None:intergenic | 25.0% |
| ! | TTGATTATGTATGATTAGTG+TGG | + | chr8_2:12746641-12746660 | Msa1234950:three_prime_UTR | 25.0% |
| ! | CTTTAAAAATGGTCGAAGTT+GGG | + | chr8_2:12742871-12742890 | Msa1234950:five_prime_UTR | 30.0% |
| TTTAAAAATGGTCGAAGTTG+GGG | + | chr8_2:12742872-12742891 | Msa1234950:five_prime_UTR | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8_2:12742934-12742953 | Msa1234950:CDS | 30.0% | |
| TAAAGCTAAAAAACGAACCT+TGG | - | chr8_2:12742983-12743002 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+AGG | - | chr8_2:12743450-12743469 | None:intergenic | 30.0% | |
| ! | TTATCATACATGTGTGGTTT+TGG | + | chr8_2:12743680-12743699 | Msa1234950:intron | 30.0% |
| ! | TATCATACATGTGTGGTTTT+GGG | + | chr8_2:12743681-12743700 | Msa1234950:intron | 30.0% |
| TACTTATATTAGGCACTTCA+TGG | + | chr8_2:12743797-12743816 | Msa1234950:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8_2:12743798-12743817 | Msa1234950:intron | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8_2:12743885-12743904 | Msa1234950:CDS | 30.0% |
| GAACCAATTACATCTCATAT+TGG | + | chr8_2:12744074-12744093 | Msa1234950:intron | 30.0% | |
| !! | ATCTCTTTGGCCTTTTTAAA+AGG | - | chr8_2:12744208-12744227 | None:intergenic | 30.0% |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8_2:12744221-12744240 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8_2:12744320-12744339 | None:intergenic | 30.0% |
| ACCTCTTAGATGTTTATAAG+TGG | - | chr8_2:12744366-12744385 | None:intergenic | 30.0% | |
| !! | TTTCATTTGATTTTCAGGAG+TGG | - | chr8_2:12744397-12744416 | None:intergenic | 30.0% |
| !! | GGGATTTTCATTTGATTTTC+AGG | - | chr8_2:12744402-12744421 | None:intergenic | 30.0% |
| TTGGATCAAGTTCAAATCTA+GGG | - | chr8_2:12744423-12744442 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8_2:12744498-12744517 | Msa1234950:intron | 30.0% |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8_2:12744716-12744735 | Msa1234950:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8_2:12744717-12744736 | Msa1234950:intron | 30.0% | |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8_2:12744722-12744741 | None:intergenic | 30.0% |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8_2:12744731-12744750 | Msa1234950:intron | 30.0% | |
| AATCCTGTGTATATTATGCA+AGG | + | chr8_2:12744977-12744996 | Msa1234950:intron | 30.0% | |
| AAACCTTGCATAATATACAC+AGG | - | chr8_2:12744983-12745002 | None:intergenic | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | - | chr8_2:12745022-12745041 | None:intergenic | 30.0% | |
| GACATTGCATAATATATGCA+GGG | - | chr8_2:12745023-12745042 | None:intergenic | 30.0% | |
| AGACATTGCATAATATATGC+AGG | - | chr8_2:12745024-12745043 | None:intergenic | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8_2:12745106-12745125 | None:intergenic | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8_2:12745571-12745590 | Msa1234950:CDS | 30.0% | |
| ! | TCTAAGAGTTTATCTAGAAC+TGG | - | chr8_2:12745641-12745660 | None:intergenic | 30.0% |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8_2:12745685-12745704 | Msa1234950:intron | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8_2:12746092-12746111 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8_2:12746140-12746159 | Msa1234950:intron | 30.0% |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8_2:12746242-12746261 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8_2:12746317-12746336 | Msa1234950:CDS | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8_2:12746318-12746337 | Msa1234950:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8_2:12746377-12746396 | Msa1234950:CDS | 30.0% | |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8_2:12746382-12746401 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8_2:12746383-12746402 | None:intergenic | 30.0% |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8_2:12746448-12746467 | Msa1234950:CDS | 30.0% | |
| ATTCAACCATAACACAACAT+AGG | - | chr8_2:12746522-12746541 | None:intergenic | 30.0% | |
| !!! | ACTATTGTTTTTGTTTTGGG+TGG | + | chr8_2:12746550-12746569 | Msa1234950:three_prime_UTR | 30.0% |
| ATTATGTATGATTAGTGTGG+TGG | + | chr8_2:12746644-12746663 | Msa1234950:three_prime_UTR | 30.0% | |
| !! | CCAACTTCGACCATTTTTAA+AGG | - | chr8_2:12742873-12742892 | None:intergenic | 35.0% |
| ! | CCTTTAAAAATGGTCGAAGT+TGG | + | chr8_2:12742870-12742889 | Msa1234950:five_prime_UTR | 35.0% |
| TATGATGGTATATTGCAGAG+TGG | + | chr8_2:12742949-12742968 | Msa1234950:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8_2:12742950-12742969 | Msa1234950:CDS | 35.0% | |
| ! | CTTAATTCTTTGAGAGTCTC+TGG | - | chr8_2:12743130-12743149 | None:intergenic | 35.0% |
| CAGAGACTCTCAAAGAATTA+AGG | + | chr8_2:12743128-12743147 | Msa1234950:CDS | 35.0% | |
| !! | TGCAATATAAATTCTAGGGC+TGG | - | chr8_2:12743736-12743755 | None:intergenic | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8_2:12743932-12743951 | Msa1234950:CDS | 35.0% |
| AGAAAAATACACGTGGATGT+CGG | - | chr8_2:12743977-12743996 | None:intergenic | 35.0% | |
| TCGTACAAGAAAAATACACG+TGG | - | chr8_2:12743984-12744003 | None:intergenic | 35.0% | |
| CAATTACATCTCATATTGGC+CGG | + | chr8_2:12744078-12744097 | Msa1234950:intron | 35.0% | |
| ACATTACGAAGGTTTATTGC+CGG | - | chr8_2:12744100-12744119 | None:intergenic | 35.0% | |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8_2:12744233-12744252 | Msa1234950:intron | 35.0% | |
| GCCACTTATAAACATCTAAG+AGG | + | chr8_2:12744362-12744381 | Msa1234950:intron | 35.0% | |
| TGGATCAAGTTCAAATCTAG+GGG | - | chr8_2:12744422-12744441 | None:intergenic | 35.0% | |
| CTTGGATCAAGTTCAAATCT+AGG | - | chr8_2:12744424-12744443 | None:intergenic | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8_2:12744732-12744751 | Msa1234950:intron | 35.0% | |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8_2:12744733-12744752 | Msa1234950:intron | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8_2:12744792-12744811 | Msa1234950:intron | 35.0% | |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8_2:12745121-12745140 | Msa1234950:intron | 35.0% |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8_2:12745367-12745386 | Msa1234950:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8_2:12745435-12745454 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8_2:12745451-12745470 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8_2:12745494-12745513 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8_2:12745501-12745520 | Msa1234950:intron | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8_2:12745516-12745535 | None:intergenic | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8_2:12745523-12745542 | Msa1234950:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8_2:12745556-12745575 | None:intergenic | 35.0% |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8_2:12745575-12745594 | Msa1234950:CDS | 35.0% | |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8_2:12745581-12745600 | None:intergenic | 35.0% |
| ! | TTATCTAGAACTGGTAAAGC+TGG | - | chr8_2:12745632-12745651 | None:intergenic | 35.0% |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8_2:12745778-12745797 | Msa1234950:intron | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8_2:12746155-12746174 | Msa1234950:intron | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8_2:12746263-12746282 | Msa1234950:CDS | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8_2:12746319-12746338 | Msa1234950:CDS | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8_2:12746470-12746489 | Msa1234950:CDS | 35.0% | |
| CTCTCAACCCTTGATTTAAG+AGG | + | chr8_2:12743408-12743427 | Msa1234950:intron | 40.0% | |
| CAACCCTTGATTTAAGAGGT+TGG | + | chr8_2:12743412-12743431 | Msa1234950:intron | 40.0% | |
| GGTCCAACCTCTTAAATCAA+GGG | - | chr8_2:12743418-12743437 | None:intergenic | 40.0% | |
| AGGTCCAACCTCTTAAATCA+AGG | - | chr8_2:12743419-12743438 | None:intergenic | 40.0% | |
| AACTTGAAGTACAAGCTGCA+TGG | + | chr8_2:12743610-12743629 | Msa1234950:intron | 40.0% | |
| !! | TAAATTCTAGGGCTGGACAT+CGG | - | chr8_2:12743729-12743748 | None:intergenic | 40.0% |
| GCACTTAACATTCCTGATGA+TGG | + | chr8_2:12743927-12743946 | Msa1234950:CDS | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8_2:12743942-12743961 | None:intergenic | 40.0% | |
| ! | AGATGTAATTGGTTCCACAG+CGG | - | chr8_2:12744069-12744088 | None:intergenic | 40.0% |
| CGGCCAATATGAGATGTAAT+TGG | - | chr8_2:12744080-12744099 | None:intergenic | 40.0% | |
| GCAATTGAAACACTACAACG+AGG | - | chr8_2:12744123-12744142 | None:intergenic | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8_2:12744793-12744812 | Msa1234950:intron | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | - | chr8_2:12745125-12745144 | None:intergenic | 40.0% | |
| TGGAAAATTGAACGGTTGGT+AGG | - | chr8_2:12745431-12745450 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8_2:12745480-12745499 | Msa1234950:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8_2:12745551-12745570 | None:intergenic | 40.0% |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8_2:12745551-12745570 | Msa1234950:CDS | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8_2:12745736-12745755 | Msa1234950:intron | 40.0% | |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8_2:12745748-12745767 | None:intergenic | 40.0% |
| ATATGGACACGAACACGATA+CGG | + | chr8_2:12745945-12745964 | Msa1234950:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8_2:12746081-12746100 | None:intergenic | 40.0% | |
| TCAGTTTAATCAGCCTCTCA+TGG | - | chr8_2:12746279-12746298 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8_2:12746454-12746473 | Msa1234950:CDS | 40.0% | |
| TGTTTCGTTTGATGTCGAGA+AGG | + | chr8_2:12746683-12746702 | Msa1234950:three_prime_UTR | 40.0% | |
| GTTTCGTTTGATGTCGAGAA+GGG | + | chr8_2:12746684-12746703 | Msa1234950:three_prime_UTR | 40.0% | |
| AAAAATGGTCGAAGTTGGGG+AGG | + | chr8_2:12742875-12742894 | Msa1234950:five_prime_UTR | 45.0% | |
| TTGAAATGCAGGGCGACTTA+AGG | - | chr8_2:12743439-12743458 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8_2:12743923-12743942 | None:intergenic | 45.0% |
| CTACAACGAGGACATTACGA+AGG | - | chr8_2:12744111-12744130 | None:intergenic | 45.0% | |
| CTACAACGAGGACATTACGA+AGG | - | chr8_2:12744111-12744130 | None:intergenic | 45.0% | |
| TAGCGAGAAACACTACAACG+AGG | - | chr8_2:12744172-12744191 | None:intergenic | 45.0% | |
| GGTCATAGTAATTCGGGGTT+CGG | + | chr8_2:12744738-12744757 | Msa1234950:intron | 45.0% | |
| CATAATATATGCAGGGGCTG+GGG | - | chr8_2:12745016-12745035 | None:intergenic | 45.0% | |
| GCATAATATATGCAGGGGCT+GGG | - | chr8_2:12745017-12745036 | None:intergenic | 45.0% | |
| TGCATAATATATGCAGGGGC+TGG | - | chr8_2:12745018-12745037 | None:intergenic | 45.0% | |
| TCTCGTGAGCTTAACTCAGT+TGG | - | chr8_2:12745050-12745069 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | + | chr8_2:12745128-12745147 | Msa1234950:intron | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8_2:12746322-12746341 | Msa1234950:CDS | 45.0% |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8_2:12746361-12746380 | None:intergenic | 45.0% | |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8_2:12746362-12746381 | Msa1234950:CDS | 45.0% | |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8_2:12742963-12742982 | Msa1234950:CDS | 50.0% | |
| !! | TGAGAGTCTCTGGTTCTCGT+GGG | - | chr8_2:12743120-12743139 | None:intergenic | 50.0% |
| !! | TTGAGAGTCTCTGGTTCTCG+TGG | - | chr8_2:12743121-12743140 | None:intergenic | 50.0% |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8_2:12743158-12743177 | None:intergenic | 50.0% |
| CCATTAACTGACCCGCATCA+GGG | - | chr8_2:12743830-12743849 | None:intergenic | 50.0% | |
| CCTGATGCGGGTCAGTTAAT+GGG | + | chr8_2:12743828-12743847 | Msa1234950:CDS | 50.0% | |
| ! | TAGTAATTCGGGGTTCGGTC+AGG | + | chr8_2:12744743-12744762 | Msa1234950:intron | 50.0% |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8_2:12744798-12744817 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | + | chr8_2:12745129-12745148 | Msa1234950:intron | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | + | chr8_2:12745130-12745149 | Msa1234950:intron | 50.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8_2:12746043-12746062 | Msa1234950:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8_2:12746065-12746084 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8_2:12746335-12746354 | None:intergenic | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8_2:12746336-12746355 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8_2:12746335-12746354 | Msa1234950:CDS | 50.0% |
| TGGTTCTCGTGGGTAAACGC+TGG | - | chr8_2:12743110-12743129 | None:intergenic | 55.0% | |
| ! | GGTCGGTTTCGGTCGGAAAT+CGG | - | chr8_2:12743708-12743727 | None:intergenic | 55.0% |
| !! | TTCTAGGGCTGGACATCGGT+CGG | - | chr8_2:12743725-12743744 | None:intergenic | 55.0% |
| CCCTGATGCGGGTCAGTTAA+TGG | + | chr8_2:12743827-12743846 | Msa1234950:CDS | 55.0% | |
| CCCATTAACTGACCCGCATC+AGG | - | chr8_2:12743831-12743850 | None:intergenic | 55.0% | |
| !! | CAGCGATGCTATTTCTCGCG+AGG | + | chr8_2:12744018-12744037 | Msa1234950:intron | 55.0% |
| AAACTCCTCGTGAACCGCTG+TGG | + | chr8_2:12744052-12744071 | Msa1234950:intron | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8_2:12746061-12746080 | Msa1234950:intron | 55.0% | |
| ! | GGACATCGGTCGGTTTCGGT+CGG | - | chr8_2:12743715-12743734 | None:intergenic | 60.0% |
| ! | GGCTGGACATCGGTCGGTTT+CGG | - | chr8_2:12743719-12743738 | None:intergenic | 60.0% |
| CATGGGCACTCACCCTGATG+CGG | + | chr8_2:12743815-12743834 | Msa1234950:CDS | 60.0% | |
| ATGGGCACTCACCCTGATGC+GGG | + | chr8_2:12743816-12743835 | Msa1234950:CDS | 60.0% | |
| TGGTTCCACAGCGGTTCACG+AGG | - | chr8_2:12744060-12744079 | None:intergenic | 60.0% | |
| ! | TGTCCGTACCGTGTCGACGT+CGG | + | chr8_2:12746020-12746039 | Msa1234950:intron | 60.0% |
| TGTCCGACGTCGACACGGTA+CGG | - | chr8_2:12746026-12746045 | None:intergenic | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | - | chr8_2:12746031-12746050 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12742853 | 12746723 | 12742853 | ID=Msa1234950;Name=Msa1234950 |
| chr8_2 | mRNA | 12742853 | 12746723 | 12742853 | ID=Msa1234950-mRNA-1;Parent=Msa1234950;Name=Msa1234950-mRNA-1;_AED=0.27;_eAED=0.27;_QI=75|1|1|1|1|1|5|219|235 |
| chr8_2 | exon | 12742853 | 12742984 | 12742853 | ID=Msa1234950-mRNA-1:exon:4957;Parent=Msa1234950-mRNA-1 |
| chr8_2 | exon | 12743094 | 12743173 | 12743094 | ID=Msa1234950-mRNA-1:exon:4958;Parent=Msa1234950-mRNA-1 |
| chr8_2 | exon | 12743809 | 12743953 | 12743809 | ID=Msa1234950-mRNA-1:exon:4959;Parent=Msa1234950-mRNA-1 |
| chr8_2 | exon | 12745533 | 12745664 | 12745533 | ID=Msa1234950-mRNA-1:exon:4960;Parent=Msa1234950-mRNA-1 |
| chr8_2 | exon | 12746211 | 12746723 | 12746211 | ID=Msa1234950-mRNA-1:exon:4961;Parent=Msa1234950-mRNA-1 |
| chr8_2 | five_prime_UTR | 12742853 | 12742927 | 12742853 | ID=Msa1234950-mRNA-1:five_prime_utr;Parent=Msa1234950-mRNA-1 |
| chr8_2 | CDS | 12742928 | 12742984 | 12742928 | ID=Msa1234950-mRNA-1:cds;Parent=Msa1234950-mRNA-1 |
| chr8_2 | CDS | 12743094 | 12743173 | 12743094 | ID=Msa1234950-mRNA-1:cds;Parent=Msa1234950-mRNA-1 |
| chr8_2 | CDS | 12743809 | 12743953 | 12743809 | ID=Msa1234950-mRNA-1:cds;Parent=Msa1234950-mRNA-1 |
| chr8_2 | CDS | 12745533 | 12745664 | 12745533 | ID=Msa1234950-mRNA-1:cds;Parent=Msa1234950-mRNA-1 |
| chr8_2 | CDS | 12746211 | 12746504 | 12746211 | ID=Msa1234950-mRNA-1:cds;Parent=Msa1234950-mRNA-1 |
| chr8_2 | three_prime_UTR | 12746505 | 12746723 | 12746505 | ID=Msa1234950-mRNA-1:three_prime_utr;Parent=Msa1234950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
