Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315040 | XP_013444458.1 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.93e-167 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315040 | sp|Q9C5D7|CAMT3_ARATH | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.23e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315040 | I3SHI5 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 4.26e-167 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234940 | Msa1315040 | 0.997855 | 1.234340e-250 | -8.615850e-47 |
| Msa1234950 | Msa1315040 | 0.914876 | 1.144818e-84 | -8.615850e-47 |
| Msa1276740 | Msa1315040 | 0.964395 | 2.841378e-123 | -8.615850e-47 |
| Msa1174610 | Msa1315040 | 0.912383 | 2.073768e-83 | -8.615850e-47 |
| Msa0584130 | Msa1315040 | 0.816620 | 5.033529e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315040 | MtrunA17_Chr8g0344401 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.21e-171 | 469 |
| Msa1315040 | MtrunA17_Chr8g0389361 | 72.926 | 229 | 61 | 1 | 5 | 233 | 11 | 238 | 1.21e-110 | 317 |
| Msa1315040 | MtrunA17_Chr6g0487981 | 69.058 | 223 | 68 | 1 | 11 | 233 | 15 | 236 | 1.62e-103 | 299 |
| Msa1315040 | MtrunA17_Chr4g0053331 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 5.47e-94 | 275 |
| Msa1315040 | MtrunA17_Chr4g0044581 | 57.965 | 226 | 95 | 0 | 8 | 233 | 20 | 245 | 1.27e-93 | 275 |
| Msa1315040 | MtrunA17_Chr4g0053031 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 1.54e-90 | 267 |
| Msa1315040 | MtrunA17_Chr4g0053241 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 9.43e-83 | 247 |
| Msa1315040 | MtrunA17_Chr4g0053021 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 1.68e-81 | 244 |
| Msa1315040 | MtrunA17_Chr4g0051041 | 54.018 | 224 | 100 | 2 | 11 | 232 | 5 | 227 | 9.54e-80 | 239 |
| Msa1315040 | MtrunA17_Chr2g0312921 | 40.092 | 217 | 120 | 4 | 17 | 233 | 91 | 297 | 5.46e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1315040 | AT4G26220.1 | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.25e-103 | 300 |
| Msa1315040 | AT4G34050.3 | 57.522 | 226 | 96 | 0 | 8 | 233 | 59 | 284 | 1.05e-92 | 274 |
| Msa1315040 | AT4G34050.1 | 57.522 | 226 | 96 | 0 | 8 | 233 | 32 | 257 | 1.28e-92 | 273 |
| Msa1315040 | AT1G67980.1 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 1.85e-80 | 241 |
| Msa1315040 | AT1G24735.1 | 53.304 | 227 | 100 | 5 | 10 | 233 | 15 | 238 | 4.80e-76 | 230 |
| Msa1315040 | AT1G67990.1 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 2.90e-73 | 223 |
| Msa1315040 | AT1G24735.2 | 43.525 | 278 | 100 | 5 | 10 | 233 | 15 | 289 | 3.46e-68 | 212 |
| Msa1315040 | AT1G24735.3 | 54.144 | 181 | 79 | 3 | 54 | 233 | 16 | 193 | 1.03e-63 | 197 |
| Msa1315040 | AT1G67980.2 | 49.697 | 165 | 79 | 2 | 69 | 233 | 2 | 162 | 1.84e-47 | 154 |
| Msa1315040 | AT3G61990.1 | 40.000 | 205 | 113 | 4 | 29 | 233 | 95 | 289 | 2.39e-47 | 158 |
| Msa1315040 | AT3G62000.1 | 37.561 | 205 | 121 | 3 | 29 | 233 | 80 | 277 | 1.01e-45 | 154 |
| Msa1315040 | AT4G34050.2 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.25e-41 | 139 |
| Msa1315040 | AT3G62000.2 | 35.897 | 195 | 118 | 3 | 29 | 223 | 80 | 267 | 4.99e-38 | 135 |
Find 51 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8_4:+14214648 | Msa1315040:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8_4:+14213939 | Msa1315040:CDS |
| TAACACAACATAGGAAAATA+AGG | 0.329232 | 8_4:-14217323 | None:intergenic |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8_4:+14214618 | Msa1315040:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8_4:+14217061 | Msa1315040:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8_4:+14217131 | Msa1315040:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8_4:+14217099 | Msa1315040:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8_4:-14214649 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8_4:+14217130 | Msa1315040:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8_4:-14216451 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8_4:+14216336 | Msa1315040:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8_4:-14214760 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8_4:+14214649 | Msa1315040:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8_4:+14217283 | Msa1315040:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8_4:+14217261 | Msa1315040:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8_4:-14217171 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8_4:-14216442 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8_4:+14217102 | Msa1315040:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8_4:+14214748 | Msa1315040:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8_4:+14217148 | Msa1315040:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8_4:-14213929 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8_4:+14217267 | Msa1315040:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8_4:+14214637 | Msa1315040:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8_4:-14213928 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8_4:-14217145 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8_4:+14214619 | Msa1315040:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8_4:+14214753 | Msa1315040:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8_4:+14217175 | Msa1315040:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8_4:+14213746 | Msa1315040:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8_4:-14213918 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8_4:+14217132 | Msa1315040:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8_4:-14217089 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8_4:+14216364 | Msa1315040:CDS |
| ATTATGTATGATTAGTGTGG+TGG | 0.558384 | 8_4:+14217457 | Msa1315040:three_prime_UTR |
| CACTAATCATACATAATCAA+AGG | 0.559292 | 8_4:-14217451 | None:intergenic |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8_4:+14214636 | Msa1315040:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8_4:-14217146 | None:intergenic |
| ATTCAACCATAACACAACAT+AGG | 0.564400 | 8_4:-14217332 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8_4:+14213762 | Msa1315040:CDS |
| TGTTTCGTTTGATGTCGAGA+AGG | 0.567913 | 8_4:+14217496 | Msa1315040:three_prime_UTR |
| TTGATTATGTATGATTAGTG+TGG | 0.584545 | 8_4:+14217454 | Msa1315040:three_prime_UTR |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8_4:+14217076 | Msa1315040:CDS |
| ACTTTATCAACTATAAGTTG+TGG | 0.595815 | 8_4:+14217412 | Msa1315040:three_prime_UTR |
| GTTTCGTTTGATGTCGAGAA+GGG | 0.599932 | 8_4:+14217497 | Msa1315040:three_prime_UTR |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8_4:+14217135 | Msa1315040:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8_4:-14214648 | None:intergenic |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8_4:-14217052 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8_4:+14213761 | Msa1315040:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8_4:-14213966 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8_4:+14213775 | Msa1315040:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8_4:-14214741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | + | chr8_4:14214062-14214081 | Msa1315040:intron | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8_4:14214165-14214184 | Msa1315040:intron | 0.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | + | chr8_4:14213824-14213843 | Msa1315040:intron | 10.0% |
| !!! | ATATAAATTATTTTATTTGG+AGG | + | chr8_4:14214168-14214187 | Msa1315040:intron | 10.0% |
| !!! | ATTTTTTTTTTTTAAAACAG+CGG | + | chr8_4:14214826-14214845 | Msa1315040:intron | 10.0% |
| !!! | AAAAAATCTTCCTTTAAAAA+TGG | + | chr8_4:14213672-14213691 | Msa1315040:five_prime_UTR | 15.0% |
| !! | TAAAAATAAATTGAGAGAAA+TGG | + | chr8_4:14213721-14213740 | Msa1315040:exon | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | + | chr8_4:14213801-14213820 | Msa1315040:intron | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | + | chr8_4:14214008-14214027 | Msa1315040:intron | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | - | chr8_4:14214194-14214213 | None:intergenic | 15.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | - | chr8_4:14214298-14214317 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTGTTTTAGTTT+CGG | - | chr8_4:14215143-14215162 | None:intergenic | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8_4:14215401-14215420 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8_4:14215648-14215667 | None:intergenic | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8_4:14216080-14216099 | Msa1315040:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8_4:14216735-14216754 | Msa1315040:intron | 15.0% |
| !!! | TAAAGGAAGATTTTTTTTAC+TGG | - | chr8_4:14213668-14213687 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8_4:14213890-14213909 | None:intergenic | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | + | chr8_4:14214472-14214491 | Msa1315040:intron | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | - | chr8_4:14215268-14215287 | None:intergenic | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8_4:14215291-14215310 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8_4:14216092-14216111 | Msa1315040:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8_4:14216646-14216665 | None:intergenic | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8_4:14216647-14216666 | Msa1315040:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8_4:14217027-14217046 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | + | chr8_4:14217099-14217118 | Msa1315040:CDS | 20.0% |
| !!! | ATGTACTATTGTTTTTGTTT+TGG | + | chr8_4:14217359-14217378 | Msa1315040:three_prime_UTR | 20.0% |
| !!! | TGTACTATTGTTTTTGTTTT+GGG | + | chr8_4:14217360-14217379 | Msa1315040:three_prime_UTR | 20.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | - | chr8_4:14213795-14213814 | None:intergenic | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8_4:14213982-14214001 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8_4:14213983-14214002 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | - | chr8_4:14214092-14214111 | None:intergenic | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | - | chr8_4:14214233-14214252 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | - | chr8_4:14214271-14214290 | None:intergenic | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8_4:14214283-14214302 | Msa1315040:intron | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | + | chr8_4:14214411-14214430 | Msa1315040:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | - | chr8_4:14214438-14214457 | None:intergenic | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8_4:14214694-14214713 | Msa1315040:CDS | 25.0% |
| ! | AAAAATACACATGGATATGT+TGG | - | chr8_4:14214798-14214817 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | + | chr8_4:14214797-14214816 | Msa1315040:intron | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | - | chr8_4:14215217-14215236 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | - | chr8_4:14215243-14215262 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8_4:14215314-14215333 | None:intergenic | 25.0% |
| !! | TTTCTAGTGGAAACAATATT+TGG | - | chr8_4:14215606-14215625 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8_4:14215883-14215902 | Msa1315040:intron | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8_4:14215894-14215913 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8_4:14215919-14215938 | Msa1315040:intron | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8_4:14216161-14216180 | Msa1315040:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8_4:14216252-14216271 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8_4:14216502-14216521 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8_4:14216741-14216760 | Msa1315040:intron | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8_4:14216907-14216926 | Msa1315040:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8_4:14216926-14216945 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8_4:14217061-14217080 | Msa1315040:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8_4:14217102-14217121 | Msa1315040:CDS | 25.0% |
| ! | TAACACAACATAGGAAAATA+AGG | - | chr8_4:14217326-14217345 | None:intergenic | 25.0% |
| !! | TATTTTCCTATGTTGTGTTA+TGG | + | chr8_4:14217326-14217345 | Msa1315040:three_prime_UTR | 25.0% |
| ! | ACTTTATCAACTATAAGTTG+TGG | + | chr8_4:14217412-14217431 | Msa1315040:three_prime_UTR | 25.0% |
| ! | CACTAATCATACATAATCAA+AGG | - | chr8_4:14217454-14217473 | None:intergenic | 25.0% |
| ! | TTGATTATGTATGATTAGTG+TGG | + | chr8_4:14217454-14217473 | Msa1315040:three_prime_UTR | 25.0% |
| ! | CTTTAAAAATGGTCGAAGTT+GGG | + | chr8_4:14213683-14213702 | Msa1315040:five_prime_UTR | 30.0% |
| TTTAAAAATGGTCGAAGTTG+GGG | + | chr8_4:14213684-14213703 | Msa1315040:five_prime_UTR | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8_4:14213746-14213765 | Msa1315040:CDS | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | + | chr8_4:14213939-14213958 | Msa1315040:CDS | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | + | chr8_4:14214227-14214246 | Msa1315040:intron | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | - | chr8_4:14214234-14214253 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | + | chr8_4:14214231-14214250 | Msa1315040:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | - | chr8_4:14214269-14214288 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | - | chr8_4:14214270-14214289 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | + | chr8_4:14214618-14214637 | Msa1315040:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8_4:14214619-14214638 | Msa1315040:intron | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8_4:14214706-14214725 | Msa1315040:CDS | 30.0% |
| AAAGTTTGCGATAAAAAGTC+AGG | - | chr8_4:14214864-14214883 | None:intergenic | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | - | chr8_4:14215014-14215033 | None:intergenic | 30.0% | |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | + | chr8_4:14215015-14215034 | Msa1315040:intron | 30.0% |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8_4:14215041-14215060 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8_4:14215140-14215159 | None:intergenic | 30.0% |
| TAGATCAAGTTCAAATCTAG+GGG | - | chr8_4:14215242-14215261 | None:intergenic | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | - | chr8_4:14215244-14215263 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | - | chr8_4:14215285-14215304 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8_4:14215318-14215337 | Msa1315040:intron | 30.0% |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8_4:14215536-14215555 | Msa1315040:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8_4:14215537-14215556 | Msa1315040:intron | 30.0% | |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8_4:14215542-14215561 | None:intergenic | 30.0% |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8_4:14215551-14215570 | Msa1315040:intron | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8_4:14215795-14215814 | Msa1315040:intron | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8_4:14215917-14215936 | None:intergenic | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8_4:14216384-14216403 | Msa1315040:CDS | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8_4:14216454-14216473 | None:intergenic | 30.0% | |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8_4:14216498-14216517 | Msa1315040:intron | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8_4:14216905-14216924 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8_4:14216953-14216972 | Msa1315040:intron | 30.0% |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8_4:14217055-14217074 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8_4:14217130-14217149 | Msa1315040:CDS | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8_4:14217131-14217150 | Msa1315040:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8_4:14217190-14217209 | Msa1315040:CDS | 30.0% | |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8_4:14217195-14217214 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8_4:14217196-14217215 | None:intergenic | 30.0% |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8_4:14217261-14217280 | Msa1315040:CDS | 30.0% | |
| ATTCAACCATAACACAACAT+AGG | - | chr8_4:14217335-14217354 | None:intergenic | 30.0% | |
| !!! | ACTATTGTTTTTGTTTTGGG+TGG | + | chr8_4:14217363-14217382 | Msa1315040:three_prime_UTR | 30.0% |
| ATTATGTATGATTAGTGTGG+TGG | + | chr8_4:14217457-14217476 | Msa1315040:three_prime_UTR | 30.0% | |
| !! | CCAACTTCGACCATTTTTAA+AGG | - | chr8_4:14213685-14213704 | None:intergenic | 35.0% |
| ! | CCTTTAAAAATGGTCGAAGT+TGG | + | chr8_4:14213682-14213701 | Msa1315040:five_prime_UTR | 35.0% |
| TATGATGGTATATTGCAGAG+TGG | + | chr8_4:14213761-14213780 | Msa1315040:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8_4:14213762-14213781 | Msa1315040:CDS | 35.0% | |
| GCAAGATGTATGATGATTTG+AGG | - | chr8_4:14214390-14214409 | None:intergenic | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | - | chr8_4:14214520-14214539 | None:intergenic | 35.0% | |
| ! | CTTTTACCATACATGTGTGT+TGG | + | chr8_4:14214518-14214537 | Msa1315040:intron | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8_4:14214753-14214772 | Msa1315040:CDS | 35.0% |
| TCGTACACCAAAAATACACA+TGG | - | chr8_4:14214807-14214826 | None:intergenic | 35.0% | |
| ! | GTGGATTTTCAATTGCATAG+CGG | + | chr8_4:14214946-14214965 | Msa1315040:intron | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | - | chr8_4:14215027-14215046 | None:intergenic | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | - | chr8_4:14215028-14215047 | None:intergenic | 35.0% |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8_4:14215053-14215072 | Msa1315040:intron | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8_4:14215186-14215205 | None:intergenic | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8_4:14215552-14215571 | Msa1315040:intron | 35.0% | |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8_4:14215553-14215572 | Msa1315040:intron | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8_4:14215613-14215632 | Msa1315040:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8_4:14215788-14215807 | Msa1315040:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | - | chr8_4:14215794-14215813 | None:intergenic | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | - | chr8_4:14215833-14215852 | None:intergenic | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | - | chr8_4:14215834-14215853 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | - | chr8_4:14215835-14215854 | None:intergenic | 35.0% | |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8_4:14215932-14215951 | Msa1315040:intron | 35.0% |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8_4:14216180-14216199 | Msa1315040:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8_4:14216248-14216267 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8_4:14216264-14216283 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8_4:14216307-14216326 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8_4:14216314-14216333 | Msa1315040:intron | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8_4:14216329-14216348 | None:intergenic | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8_4:14216336-14216355 | Msa1315040:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8_4:14216369-14216388 | None:intergenic | 35.0% |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8_4:14216388-14216407 | Msa1315040:CDS | 35.0% | |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8_4:14216394-14216413 | None:intergenic | 35.0% |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8_4:14216445-14216464 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8_4:14216591-14216610 | Msa1315040:intron | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8_4:14216968-14216987 | Msa1315040:intron | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8_4:14217076-14217095 | Msa1315040:CDS | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | - | chr8_4:14217092-14217111 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8_4:14217132-14217151 | Msa1315040:CDS | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8_4:14217283-14217302 | Msa1315040:CDS | 35.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | + | chr8_4:14214243-14214262 | Msa1315040:intron | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | + | chr8_4:14214421-14214440 | Msa1315040:intron | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8_4:14214748-14214767 | Msa1315040:CDS | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8_4:14214763-14214782 | None:intergenic | 40.0% | |
| AAACCAATCACATCTCATGC+TGG | + | chr8_4:14214899-14214918 | Msa1315040:intron | 40.0% | |
| !! | AAAAATGGGATAGTGGGTAG+TGG | + | chr8_4:14214927-14214946 | Msa1315040:intron | 40.0% |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8_4:14215182-14215201 | Msa1315040:intron | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8_4:14215614-14215633 | Msa1315040:intron | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | - | chr8_4:14215861-14215880 | None:intergenic | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | - | chr8_4:14215936-14215955 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8_4:14216293-14216312 | Msa1315040:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8_4:14216364-14216383 | None:intergenic | 40.0% |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8_4:14216364-14216383 | Msa1315040:CDS | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8_4:14216549-14216568 | Msa1315040:intron | 40.0% | |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8_4:14216561-14216580 | None:intergenic | 40.0% |
| ATATGGACACGAACACGATA+CGG | + | chr8_4:14216758-14216777 | Msa1315040:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8_4:14216894-14216913 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8_4:14217267-14217286 | Msa1315040:CDS | 40.0% | |
| TGTTTCGTTTGATGTCGAGA+AGG | + | chr8_4:14217496-14217515 | Msa1315040:three_prime_UTR | 40.0% | |
| GTTTCGTTTGATGTCGAGAA+GGG | + | chr8_4:14217497-14217516 | Msa1315040:three_prime_UTR | 40.0% | |
| AAAAATGGTCGAAGTTGGGG+AGG | + | chr8_4:14213687-14213706 | Msa1315040:five_prime_UTR | 45.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | - | chr8_4:14213921-14213940 | None:intergenic | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | - | chr8_4:14213931-14213950 | None:intergenic | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | - | chr8_4:14213932-14213951 | None:intergenic | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | - | chr8_4:14214527-14214546 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8_4:14214744-14214763 | None:intergenic | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | - | chr8_4:14214925-14214944 | None:intergenic | 45.0% |
| TAGTAATTCGGGGTTCAGTC+AGG | + | chr8_4:14215563-14215582 | Msa1315040:intron | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | + | chr8_4:14215939-14215958 | Msa1315040:intron | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8_4:14217135-14217154 | Msa1315040:CDS | 45.0% |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8_4:14217174-14217193 | None:intergenic | 45.0% | |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8_4:14217175-14217194 | Msa1315040:CDS | 45.0% | |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | - | chr8_4:14214201-14214220 | None:intergenic | 5.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | + | chr8_4:14214200-14214219 | Msa1315040:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | + | chr8_4:14214608-14214627 | Msa1315040:intron | 5.0% |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8_4:14213775-14213794 | Msa1315040:CDS | 50.0% | |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8_4:14213969-14213988 | None:intergenic | 50.0% |
| CAATCACATCTCATGCTGGC+CGG | + | chr8_4:14214903-14214922 | Msa1315040:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | + | chr8_4:14214913-14214932 | Msa1315040:intron | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | + | chr8_4:14214921-14214940 | Msa1315040:intron | 50.0% | |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8_4:14215619-14215638 | None:intergenic | 50.0% |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | + | chr8_4:14215807-14215826 | Msa1315040:intron | 50.0% |
| TGCATAATGTATGCAGGGGC+CGG | - | chr8_4:14215829-14215848 | None:intergenic | 50.0% | |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | + | chr8_4:14215940-14215959 | Msa1315040:intron | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | + | chr8_4:14215941-14215960 | Msa1315040:intron | 50.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8_4:14216856-14216875 | Msa1315040:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8_4:14216878-14216897 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8_4:14217148-14217167 | None:intergenic | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8_4:14217149-14217168 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8_4:14217148-14217167 | Msa1315040:CDS | 50.0% |
| ! | TGAAATGCGGGGCCGACTTA+AGG | - | chr8_4:14214258-14214277 | None:intergenic | 55.0% |
| CCATTAGCTGACCCGCATCA+GGG | - | chr8_4:14214651-14214670 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | + | chr8_4:14214649-14214668 | Msa1315040:CDS | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | - | chr8_4:14214905-14214924 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | + | chr8_4:14214912-14214931 | Msa1315040:intron | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | + | chr8_4:14214920-14214939 | Msa1315040:intron | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | - | chr8_4:14215827-14215846 | None:intergenic | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | - | chr8_4:14215828-14215847 | None:intergenic | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8_4:14216874-14216893 | Msa1315040:intron | 55.0% | |
| !! | CATGGGCACTGACCCTGATG+CGG | + | chr8_4:14214636-14214655 | Msa1315040:CDS | 60.0% |
| !! | ATGGGCACTGACCCTGATGC+GGG | + | chr8_4:14214637-14214656 | Msa1315040:CDS | 60.0% |
| CCCTGATGCGGGTCAGCTAA+TGG | + | chr8_4:14214648-14214667 | Msa1315040:CDS | 60.0% | |
| CCCATTAGCTGACCCGCATC+AGG | - | chr8_4:14214652-14214671 | None:intergenic | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | - | chr8_4:14216844-14216863 | None:intergenic | 60.0% | |
| ! | TGTCCGTGCCGTGTCGACGT+CGG | + | chr8_4:14216833-14216852 | Msa1315040:intron | 65.0% |
| TGTCCGACGTCGACACGGCA+CGG | - | chr8_4:14216839-14216858 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 14213665 | 14217536 | 14213665 | ID=Msa1315040;Name=Msa1315040 |
| chr8_4 | mRNA | 14213665 | 14217536 | 14213665 | ID=Msa1315040-mRNA-1;Parent=Msa1315040;Name=Msa1315040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|1|1|1|1|1|5|219|235 |
| chr8_4 | exon | 14213665 | 14213796 | 14213665 | ID=Msa1315040-mRNA-1:exon:5354;Parent=Msa1315040-mRNA-1 |
| chr8_4 | exon | 14213905 | 14213984 | 14213905 | ID=Msa1315040-mRNA-1:exon:5355;Parent=Msa1315040-mRNA-1 |
| chr8_4 | exon | 14214630 | 14214774 | 14214630 | ID=Msa1315040-mRNA-1:exon:5356;Parent=Msa1315040-mRNA-1 |
| chr8_4 | exon | 14216346 | 14216477 | 14216346 | ID=Msa1315040-mRNA-1:exon:5357;Parent=Msa1315040-mRNA-1 |
| chr8_4 | exon | 14217024 | 14217536 | 14217024 | ID=Msa1315040-mRNA-1:exon:5358;Parent=Msa1315040-mRNA-1 |
| chr8_4 | five_prime_UTR | 14213665 | 14213739 | 14213665 | ID=Msa1315040-mRNA-1:five_prime_utr;Parent=Msa1315040-mRNA-1 |
| chr8_4 | CDS | 14213740 | 14213796 | 14213740 | ID=Msa1315040-mRNA-1:cds;Parent=Msa1315040-mRNA-1 |
| chr8_4 | CDS | 14213905 | 14213984 | 14213905 | ID=Msa1315040-mRNA-1:cds;Parent=Msa1315040-mRNA-1 |
| chr8_4 | CDS | 14214630 | 14214774 | 14214630 | ID=Msa1315040-mRNA-1:cds;Parent=Msa1315040-mRNA-1 |
| chr8_4 | CDS | 14216346 | 14216477 | 14216346 | ID=Msa1315040-mRNA-1:cds;Parent=Msa1315040-mRNA-1 |
| chr8_4 | CDS | 14217024 | 14217317 | 14217024 | ID=Msa1315040-mRNA-1:cds;Parent=Msa1315040-mRNA-1 |
| chr8_4 | three_prime_UTR | 14217318 | 14217536 | 14217318 | ID=Msa1315040-mRNA-1:three_prime_utr;Parent=Msa1315040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
