Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276740 | XP_013444458.1 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.93e-167 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276740 | sp|Q9C5D7|CAMT3_ARATH | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.23e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276740 | I3SHI5 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 4.26e-167 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234940 | Msa1276740 | 0.962686 | 3.571552e-121 | -8.615850e-47 |
| Msa1234950 | Msa1276740 | 0.905748 | 3.090537e-80 | -8.615850e-47 |
| Msa1276740 | Msa1315040 | 0.964395 | 2.841378e-123 | -8.615850e-47 |
| Msa1174610 | Msa1276740 | 0.884672 | 1.570138e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276740 | MtrunA17_Chr8g0344401 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.21e-171 | 469 |
| Msa1276740 | MtrunA17_Chr8g0389361 | 72.926 | 229 | 61 | 1 | 5 | 233 | 11 | 238 | 1.21e-110 | 317 |
| Msa1276740 | MtrunA17_Chr6g0487981 | 69.058 | 223 | 68 | 1 | 11 | 233 | 15 | 236 | 1.62e-103 | 299 |
| Msa1276740 | MtrunA17_Chr4g0053331 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 5.47e-94 | 275 |
| Msa1276740 | MtrunA17_Chr4g0044581 | 57.965 | 226 | 95 | 0 | 8 | 233 | 20 | 245 | 1.27e-93 | 275 |
| Msa1276740 | MtrunA17_Chr4g0053031 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 1.54e-90 | 267 |
| Msa1276740 | MtrunA17_Chr4g0053241 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 9.43e-83 | 247 |
| Msa1276740 | MtrunA17_Chr4g0053021 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 1.68e-81 | 244 |
| Msa1276740 | MtrunA17_Chr4g0051041 | 54.018 | 224 | 100 | 2 | 11 | 232 | 5 | 227 | 9.54e-80 | 239 |
| Msa1276740 | MtrunA17_Chr2g0312921 | 40.092 | 217 | 120 | 4 | 17 | 233 | 91 | 297 | 5.46e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276740 | AT4G26220.1 | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.25e-103 | 300 |
| Msa1276740 | AT4G34050.3 | 57.522 | 226 | 96 | 0 | 8 | 233 | 59 | 284 | 1.05e-92 | 274 |
| Msa1276740 | AT4G34050.1 | 57.522 | 226 | 96 | 0 | 8 | 233 | 32 | 257 | 1.28e-92 | 273 |
| Msa1276740 | AT1G67980.1 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 1.85e-80 | 241 |
| Msa1276740 | AT1G24735.1 | 53.304 | 227 | 100 | 5 | 10 | 233 | 15 | 238 | 4.80e-76 | 230 |
| Msa1276740 | AT1G67990.1 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 2.90e-73 | 223 |
| Msa1276740 | AT1G24735.2 | 43.525 | 278 | 100 | 5 | 10 | 233 | 15 | 289 | 3.46e-68 | 212 |
| Msa1276740 | AT1G24735.3 | 54.144 | 181 | 79 | 3 | 54 | 233 | 16 | 193 | 1.03e-63 | 197 |
| Msa1276740 | AT1G67980.2 | 49.697 | 165 | 79 | 2 | 69 | 233 | 2 | 162 | 1.84e-47 | 154 |
| Msa1276740 | AT3G61990.1 | 40.000 | 205 | 113 | 4 | 29 | 233 | 95 | 289 | 2.39e-47 | 158 |
| Msa1276740 | AT3G62000.1 | 37.561 | 205 | 121 | 3 | 29 | 233 | 80 | 277 | 1.01e-45 | 154 |
| Msa1276740 | AT4G34050.2 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.25e-41 | 139 |
| Msa1276740 | AT3G62000.2 | 35.897 | 195 | 118 | 3 | 29 | 223 | 80 | 267 | 4.99e-38 | 135 |
Find 51 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8_3:-11540411 | Msa1276740:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8_3:-11541126 | Msa1276740:CDS |
| TAACACAACATAGGAAAATA+AGG | 0.329232 | 8_3:+11537755 | None:intergenic |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8_3:-11540441 | Msa1276740:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8_3:-11538017 | Msa1276740:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8_3:-11537947 | Msa1276740:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8_3:-11537979 | Msa1276740:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8_3:+11540410 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8_3:-11537948 | Msa1276740:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8_3:+11538627 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8_3:-11538742 | Msa1276740:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8_3:+11540299 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8_3:-11540410 | Msa1276740:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8_3:-11537795 | Msa1276740:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8_3:-11537817 | Msa1276740:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8_3:+11537907 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8_3:+11538636 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8_3:-11537976 | Msa1276740:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8_3:-11540311 | Msa1276740:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8_3:-11537930 | Msa1276740:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8_3:+11541136 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8_3:-11537811 | Msa1276740:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8_3:-11540422 | Msa1276740:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8_3:+11541137 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8_3:+11537933 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8_3:-11540440 | Msa1276740:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8_3:-11540306 | Msa1276740:intron |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8_3:-11537903 | Msa1276740:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8_3:-11541319 | Msa1276740:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8_3:+11541147 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8_3:-11537946 | Msa1276740:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8_3:+11537989 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8_3:-11538714 | Msa1276740:CDS |
| ATTATGTATGATTAGTGTGG+TGG | 0.558384 | 8_3:-11537621 | Msa1276740:three_prime_UTR |
| CACTAATCATACATAATCAA+AGG | 0.559292 | 8_3:+11537627 | None:intergenic |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8_3:-11540423 | Msa1276740:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8_3:+11537932 | None:intergenic |
| ATTCAACCATAACACAACAT+AGG | 0.564400 | 8_3:+11537746 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8_3:-11541303 | Msa1276740:CDS |
| TGTTTCGTTTGATGTCGAGA+AGG | 0.567913 | 8_3:-11537582 | Msa1276740:three_prime_UTR |
| TTGATTATGTATGATTAGTG+TGG | 0.584545 | 8_3:-11537624 | Msa1276740:three_prime_UTR |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8_3:-11538002 | Msa1276740:CDS |
| ACTTTATCAACTATAAGTTG+TGG | 0.595815 | 8_3:-11537666 | Msa1276740:three_prime_UTR |
| GTTTCGTTTGATGTCGAGAA+GGG | 0.599932 | 8_3:-11537581 | Msa1276740:three_prime_UTR |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8_3:-11537943 | Msa1276740:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8_3:+11540411 | None:intergenic |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8_3:+11538026 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8_3:-11541304 | Msa1276740:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8_3:+11541099 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8_3:-11541290 | Msa1276740:intron |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8_3:+11540318 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | - | chr8_3:11537961-11537980 | Msa1276740:CDS | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | - | chr8_3:11538064-11538083 | Msa1276740:intron | 0.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | - | chr8_3:11537723-11537742 | Msa1276740:three_prime_UTR | 10.0% |
| !!! | ATATAAATTATTTTATTTGG+AGG | - | chr8_3:11538067-11538086 | Msa1276740:intron | 10.0% |
| !!! | TTAATTTTTTGTTTTAGTTT+CGG | + | chr8_3:11539036-11539055 | None:intergenic | 10.0% |
| !!! | AAAAAATCTTCCTTTAAAAA+TGG | - | chr8_3:11537571-11537590 | Msa1276740:three_prime_UTR | 15.0% |
| !! | TAAAAATAAATTGAGAGAAA+TGG | - | chr8_3:11537620-11537639 | Msa1276740:three_prime_UTR | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | - | chr8_3:11537700-11537719 | Msa1276740:three_prime_UTR | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | - | chr8_3:11537907-11537926 | Msa1276740:CDS | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | + | chr8_3:11538093-11538112 | None:intergenic | 15.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | + | chr8_3:11538197-11538216 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAAAACAG+CGG | - | chr8_3:11538730-11538749 | Msa1276740:CDS | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | + | chr8_3:11539287-11539306 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | + | chr8_3:11539534-11539553 | None:intergenic | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | - | chr8_3:11539966-11539985 | Msa1276740:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | - | chr8_3:11540621-11540640 | Msa1276740:intron | 15.0% |
| !!! | TAAAGGAAGATTTTTTTTAC+TGG | + | chr8_3:11537567-11537586 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | + | chr8_3:11537789-11537808 | None:intergenic | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | - | chr8_3:11538377-11538396 | Msa1276740:intron | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | + | chr8_3:11539154-11539173 | None:intergenic | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | + | chr8_3:11539177-11539196 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | - | chr8_3:11539978-11539997 | Msa1276740:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | + | chr8_3:11540532-11540551 | None:intergenic | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | - | chr8_3:11540533-11540552 | Msa1276740:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | + | chr8_3:11540913-11540932 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | - | chr8_3:11540985-11541004 | Msa1276740:intron | 20.0% |
| !!! | ATGTACTATTGTTTTTGTTT+TGG | - | chr8_3:11541245-11541264 | Msa1276740:intron | 20.0% |
| !!! | TGTACTATTGTTTTTGTTTT+GGG | - | chr8_3:11541246-11541265 | Msa1276740:intron | 20.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | + | chr8_3:11537694-11537713 | None:intergenic | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | + | chr8_3:11537881-11537900 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | + | chr8_3:11537882-11537901 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | + | chr8_3:11537991-11538010 | None:intergenic | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | + | chr8_3:11538132-11538151 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | + | chr8_3:11538170-11538189 | None:intergenic | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | - | chr8_3:11538182-11538201 | Msa1276740:intron | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | - | chr8_3:11538316-11538335 | Msa1276740:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | + | chr8_3:11538343-11538362 | None:intergenic | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | - | chr8_3:11538599-11538618 | Msa1276740:intron | 25.0% |
| ! | AAAAATACACATGGATATGT+TGG | + | chr8_3:11538703-11538722 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | - | chr8_3:11538702-11538721 | Msa1276740:CDS | 25.0% |
| !!! | ATTTTTTGTTTTAGTTTCGG+TGG | + | chr8_3:11539033-11539052 | None:intergenic | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | + | chr8_3:11539103-11539122 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | + | chr8_3:11539129-11539148 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | + | chr8_3:11539200-11539219 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | - | chr8_3:11539769-11539788 | Msa1276740:intron | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | + | chr8_3:11539780-11539799 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | - | chr8_3:11539805-11539824 | Msa1276740:intron | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | - | chr8_3:11540047-11540066 | Msa1276740:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | + | chr8_3:11540138-11540157 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | + | chr8_3:11540388-11540407 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | - | chr8_3:11540627-11540646 | Msa1276740:intron | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | - | chr8_3:11540793-11540812 | Msa1276740:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | + | chr8_3:11540812-11540831 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | - | chr8_3:11540947-11540966 | Msa1276740:intron | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | - | chr8_3:11540988-11541007 | Msa1276740:intron | 25.0% |
| ! | TAACACAACATAGGAAAATA+AGG | + | chr8_3:11541212-11541231 | None:intergenic | 25.0% |
| !! | TATTTTCCTATGTTGTGTTA+TGG | - | chr8_3:11541212-11541231 | Msa1276740:intron | 25.0% |
| ! | ACTTTATCAACTATAAGTTG+TGG | - | chr8_3:11541298-11541317 | Msa1276740:CDS | 25.0% |
| ! | CACTAATCATACATAATCAA+AGG | + | chr8_3:11541340-11541359 | None:intergenic | 25.0% |
| ! | TTGATTATGTATGATTAGTG+TGG | - | chr8_3:11541340-11541359 | Msa1276740:exon | 25.0% |
| ! | CTTTAAAAATGGTCGAAGTT+GGG | - | chr8_3:11537582-11537601 | Msa1276740:three_prime_UTR | 30.0% |
| TTTAAAAATGGTCGAAGTTG+GGG | - | chr8_3:11537583-11537602 | Msa1276740:three_prime_UTR | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | - | chr8_3:11537645-11537664 | Msa1276740:three_prime_UTR | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | - | chr8_3:11537838-11537857 | Msa1276740:CDS | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | - | chr8_3:11538126-11538145 | Msa1276740:intron | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | + | chr8_3:11538133-11538152 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | - | chr8_3:11538130-11538149 | Msa1276740:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | + | chr8_3:11538168-11538187 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | + | chr8_3:11538169-11538188 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | - | chr8_3:11538523-11538542 | Msa1276740:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | - | chr8_3:11538524-11538543 | Msa1276740:intron | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | - | chr8_3:11538611-11538630 | Msa1276740:intron | 30.0% |
| TTCAAAAGGGAAAATGCTTA+AGG | + | chr8_3:11538907-11538926 | None:intergenic | 30.0% | |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | - | chr8_3:11538908-11538927 | Msa1276740:intron | 30.0% |
| GTTTCGCTTTAATATCTCTT+TGG | + | chr8_3:11538934-11538953 | None:intergenic | 30.0% | |
| TAGATCAAGTTCAAATCTAG+GGG | + | chr8_3:11539128-11539147 | None:intergenic | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | + | chr8_3:11539130-11539149 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | + | chr8_3:11539171-11539190 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | - | chr8_3:11539204-11539223 | Msa1276740:intron | 30.0% |
| ACTCCGATTTATATGAGAAA+AGG | - | chr8_3:11539422-11539441 | Msa1276740:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | - | chr8_3:11539423-11539442 | Msa1276740:intron | 30.0% | |
| ! | GACCCTTTTCTCATATAAAT+CGG | + | chr8_3:11539428-11539447 | None:intergenic | 30.0% |
| AGAAAAGGGTCATAGTAATT+CGG | - | chr8_3:11539437-11539456 | Msa1276740:intron | 30.0% | |
| TCTCTAGTGGAAACAATATT+TGG | + | chr8_3:11539492-11539511 | None:intergenic | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | - | chr8_3:11539681-11539700 | Msa1276740:intron | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | + | chr8_3:11539803-11539822 | None:intergenic | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | - | chr8_3:11540270-11540289 | Msa1276740:intron | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | + | chr8_3:11540340-11540359 | None:intergenic | 30.0% | |
| !! | GCCTAAACTTGTTTATGTTT+TGG | - | chr8_3:11540384-11540403 | Msa1276740:CDS | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | + | chr8_3:11540791-11540810 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | - | chr8_3:11540839-11540858 | Msa1276740:intron | 30.0% |
| ATGTTTATCAGCATCAACAA+AGG | + | chr8_3:11540941-11540960 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | - | chr8_3:11541016-11541035 | Msa1276740:intron | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | - | chr8_3:11541017-11541036 | Msa1276740:intron | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | - | chr8_3:11541076-11541095 | Msa1276740:intron | 30.0% | |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | + | chr8_3:11541081-11541100 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | + | chr8_3:11541082-11541101 | None:intergenic | 30.0% |
| GAAATTTGTCTTGCTTCAAT+TGG | - | chr8_3:11541147-11541166 | Msa1276740:CDS | 30.0% | |
| ATTCAACCATAACACAACAT+AGG | + | chr8_3:11541221-11541240 | None:intergenic | 30.0% | |
| !!! | ACTATTGTTTTTGTTTTGGG+TGG | - | chr8_3:11541249-11541268 | Msa1276740:intron | 30.0% |
| ATTATGTATGATTAGTGTGG+TGG | - | chr8_3:11541343-11541362 | Msa1276740:exon | 30.0% | |
| !! | CCAACTTCGACCATTTTTAA+AGG | + | chr8_3:11537584-11537603 | None:intergenic | 35.0% |
| ! | CCTTTAAAAATGGTCGAAGT+TGG | - | chr8_3:11537581-11537600 | Msa1276740:three_prime_UTR | 35.0% |
| TATGATGGTATATTGCAGAG+TGG | - | chr8_3:11537660-11537679 | Msa1276740:three_prime_UTR | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | - | chr8_3:11537661-11537680 | Msa1276740:three_prime_UTR | 35.0% | |
| ! | ATGATGATTTGAGGTGCAAA+CGG | + | chr8_3:11538286-11538305 | None:intergenic | 35.0% |
| GCAAGATGTATGATGATTTG+AGG | + | chr8_3:11538295-11538314 | None:intergenic | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | + | chr8_3:11538425-11538444 | None:intergenic | 35.0% | |
| ! | CTTTTACCATACATGTGTGT+TGG | - | chr8_3:11538423-11538442 | Msa1276740:intron | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | - | chr8_3:11538658-11538677 | Msa1276740:CDS | 35.0% |
| TCGTACACCAAAAATACACA+TGG | + | chr8_3:11538712-11538731 | None:intergenic | 35.0% | |
| ! | GTGGATTTTCAATTGCATAG+CGG | - | chr8_3:11538839-11538858 | Msa1276740:intron | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | + | chr8_3:11538920-11538939 | None:intergenic | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | + | chr8_3:11538921-11538940 | None:intergenic | 35.0% |
| AGCGAAACAAACATAGTAGA+AGG | - | chr8_3:11538946-11538965 | Msa1276740:intron | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | + | chr8_3:11539072-11539091 | None:intergenic | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | - | chr8_3:11539438-11539457 | Msa1276740:intron | 35.0% | |
| AAAAGGGTCATAGTAATTCG+GGG | - | chr8_3:11539439-11539458 | Msa1276740:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | - | chr8_3:11539674-11539693 | Msa1276740:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | + | chr8_3:11539680-11539699 | None:intergenic | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | + | chr8_3:11539719-11539738 | None:intergenic | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | + | chr8_3:11539720-11539739 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | + | chr8_3:11539721-11539740 | None:intergenic | 35.0% | |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | - | chr8_3:11539818-11539837 | Msa1276740:intron | 35.0% |
| AAGGTGAATGAGTTAGAAAC+TGG | - | chr8_3:11540066-11540085 | Msa1276740:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | + | chr8_3:11540134-11540153 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | + | chr8_3:11540150-11540169 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | + | chr8_3:11540193-11540212 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | - | chr8_3:11540200-11540219 | Msa1276740:intron | 35.0% | |
| GATCTACAACAACCATACAA+TGG | + | chr8_3:11540215-11540234 | None:intergenic | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | - | chr8_3:11540222-11540241 | Msa1276740:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | + | chr8_3:11540255-11540274 | None:intergenic | 35.0% |
| CTTCCATTCATAAAAAAGGC+TGG | - | chr8_3:11540274-11540293 | Msa1276740:intron | 35.0% | |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | + | chr8_3:11540280-11540299 | None:intergenic | 35.0% |
| TTATCAAGAACTGGTAAAGC+TGG | + | chr8_3:11540331-11540350 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | - | chr8_3:11540477-11540496 | Msa1276740:intron | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | - | chr8_3:11540854-11540873 | Msa1276740:intron | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | - | chr8_3:11540962-11540981 | Msa1276740:intron | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | + | chr8_3:11540978-11540997 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | - | chr8_3:11541018-11541037 | Msa1276740:intron | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | - | chr8_3:11541169-11541188 | Msa1276740:intron | 35.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | - | chr8_3:11538142-11538161 | Msa1276740:intron | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | - | chr8_3:11538326-11538345 | Msa1276740:intron | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | - | chr8_3:11538653-11538672 | Msa1276740:CDS | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | + | chr8_3:11538668-11538687 | None:intergenic | 40.0% | |
| GCAGTTTGCGAAAAAAAGTC+AGG | + | chr8_3:11538768-11538787 | None:intergenic | 40.0% | |
| AAACCAATCACATCTCATGC+TGG | - | chr8_3:11538792-11538811 | Msa1276740:intron | 40.0% | |
| !! | AAAAATGGGATAGTGGGTAG+TGG | - | chr8_3:11538820-11538839 | Msa1276740:intron | 40.0% |
| GCCACTTCTAAACATCTAAG+AGG | - | chr8_3:11539068-11539087 | Msa1276740:intron | 40.0% | |
| TTTCCACTAGAGATCGTACT+CGG | - | chr8_3:11539499-11539518 | Msa1276740:intron | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | + | chr8_3:11539747-11539766 | None:intergenic | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | + | chr8_3:11539822-11539841 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | - | chr8_3:11540179-11540198 | Msa1276740:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | + | chr8_3:11540250-11540269 | None:intergenic | 40.0% |
| GACCGAAAAGCTTATGAAGT+AGG | - | chr8_3:11540250-11540269 | Msa1276740:intron | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | - | chr8_3:11540435-11540454 | Msa1276740:intron | 40.0% | |
| ! | CGCATTTTGCCACAACATAA+AGG | + | chr8_3:11540447-11540466 | None:intergenic | 40.0% |
| ATATGGACACGAACACGATA+CGG | - | chr8_3:11540644-11540663 | Msa1276740:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | + | chr8_3:11540780-11540799 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | - | chr8_3:11541153-11541172 | Msa1276740:CDS | 40.0% | |
| TGTTTCGTTTGATGTCGAGA+AGG | - | chr8_3:11541382-11541401 | Msa1276740:five_prime_UTR | 40.0% | |
| GTTTCGTTTGATGTCGAGAA+GGG | - | chr8_3:11541383-11541402 | Msa1276740:five_prime_UTR | 40.0% | |
| AAAAATGGTCGAAGTTGGGG+AGG | - | chr8_3:11537586-11537605 | Msa1276740:three_prime_UTR | 45.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | + | chr8_3:11537820-11537839 | None:intergenic | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | + | chr8_3:11537830-11537849 | None:intergenic | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | + | chr8_3:11537831-11537850 | None:intergenic | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | + | chr8_3:11538432-11538451 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | + | chr8_3:11538649-11538668 | None:intergenic | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | + | chr8_3:11538818-11538837 | None:intergenic | 45.0% |
| TAGTAATTCGGGGTTCAGTC+AGG | - | chr8_3:11539449-11539468 | Msa1276740:intron | 45.0% | |
| TTCCACTAGAGATCGTACTC+GGG | - | chr8_3:11539500-11539519 | Msa1276740:intron | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | - | chr8_3:11539825-11539844 | Msa1276740:intron | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | - | chr8_3:11541021-11541040 | Msa1276740:intron | 45.0% |
| GGATCTAGAAGAGCTTCTTC+AGG | + | chr8_3:11541060-11541079 | None:intergenic | 45.0% | |
| AAGAAGCTCTTCTAGATCCC+AGG | - | chr8_3:11541061-11541080 | Msa1276740:intron | 45.0% | |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | + | chr8_3:11538100-11538119 | None:intergenic | 5.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | - | chr8_3:11538099-11538118 | Msa1276740:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | - | chr8_3:11538513-11538532 | Msa1276740:intron | 5.0% |
| GCAGAGTGGGAATTTGACCA+AGG | - | chr8_3:11537674-11537693 | Msa1276740:three_prime_UTR | 50.0% | |
| ! | GTACATAGGGTAGCTTGCAG+TGG | + | chr8_3:11537868-11537887 | None:intergenic | 50.0% |
| CAATCACATCTCATGCTGGC+CGG | - | chr8_3:11538796-11538815 | Msa1276740:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | - | chr8_3:11538806-11538825 | Msa1276740:intron | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | - | chr8_3:11538814-11538833 | Msa1276740:intron | 50.0% | |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | - | chr8_3:11539693-11539712 | Msa1276740:intron | 50.0% |
| TGCATAATGTATGCAGGGGC+CGG | + | chr8_3:11539715-11539734 | None:intergenic | 50.0% | |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | - | chr8_3:11539826-11539845 | Msa1276740:intron | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | - | chr8_3:11539827-11539846 | Msa1276740:intron | 50.0% |
| ACACGACAAGTGTCTGACAC+CGG | - | chr8_3:11540742-11540761 | Msa1276740:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | + | chr8_3:11540764-11540783 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | + | chr8_3:11541034-11541053 | None:intergenic | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | + | chr8_3:11541035-11541054 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | - | chr8_3:11541034-11541053 | Msa1276740:intron | 50.0% |
| ! | TGAAATGCGGGGCCGACTTA+AGG | + | chr8_3:11538157-11538176 | None:intergenic | 55.0% |
| CCATTAGCTGACCCGCATCA+GGG | + | chr8_3:11538556-11538575 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | - | chr8_3:11538554-11538573 | Msa1276740:intron | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | + | chr8_3:11538798-11538817 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | - | chr8_3:11538805-11538824 | Msa1276740:intron | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | - | chr8_3:11538813-11538832 | Msa1276740:intron | 55.0% | |
| AGCCCGAGTACGATCTCTAG+TGG | + | chr8_3:11539505-11539524 | None:intergenic | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | + | chr8_3:11539713-11539732 | None:intergenic | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | + | chr8_3:11539714-11539733 | None:intergenic | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | - | chr8_3:11540760-11540779 | Msa1276740:intron | 55.0% | |
| !! | CATGGGCACTGACCCTGATG+CGG | - | chr8_3:11538541-11538560 | Msa1276740:intron | 60.0% |
| !! | ATGGGCACTGACCCTGATGC+GGG | - | chr8_3:11538542-11538561 | Msa1276740:intron | 60.0% |
| CCCTGATGCGGGTCAGCTAA+TGG | - | chr8_3:11538553-11538572 | Msa1276740:intron | 60.0% | |
| CCCATTAGCTGACCCGCATC+AGG | + | chr8_3:11538557-11538576 | None:intergenic | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | + | chr8_3:11540730-11540749 | None:intergenic | 60.0% | |
| ! | TGTCCGTGCCGTGTCGACGT+CGG | - | chr8_3:11540719-11540738 | Msa1276740:intron | 65.0% |
| TGTCCGACGTCGACACGGCA+CGG | + | chr8_3:11540725-11540744 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 11537564 | 11541422 | 11537564 | ID=Msa1276740;Name=Msa1276740 |
| chr8_3 | mRNA | 11537564 | 11541422 | 11537564 | ID=Msa1276740-mRNA-1;Parent=Msa1276740;Name=Msa1276740-mRNA-1;_AED=0.06;_eAED=0.06;_QI=75|1|1|1|1|1|5|219|235 |
| chr8_3 | exon | 11537564 | 11538076 | 11537564 | ID=Msa1276740-mRNA-1:exon:4693;Parent=Msa1276740-mRNA-1 |
| chr8_3 | exon | 11538623 | 11538754 | 11538623 | ID=Msa1276740-mRNA-1:exon:4692;Parent=Msa1276740-mRNA-1 |
| chr8_3 | exon | 11540307 | 11540451 | 11540307 | ID=Msa1276740-mRNA-1:exon:4691;Parent=Msa1276740-mRNA-1 |
| chr8_3 | exon | 11541103 | 11541182 | 11541103 | ID=Msa1276740-mRNA-1:exon:4690;Parent=Msa1276740-mRNA-1 |
| chr8_3 | exon | 11541291 | 11541422 | 11541291 | ID=Msa1276740-mRNA-1:exon:4689;Parent=Msa1276740-mRNA-1 |
| chr8_3 | five_prime_UTR | 11541348 | 11541422 | 11541348 | ID=Msa1276740-mRNA-1:five_prime_utr;Parent=Msa1276740-mRNA-1 |
| chr8_3 | CDS | 11541291 | 11541347 | 11541291 | ID=Msa1276740-mRNA-1:cds;Parent=Msa1276740-mRNA-1 |
| chr8_3 | CDS | 11541103 | 11541182 | 11541103 | ID=Msa1276740-mRNA-1:cds;Parent=Msa1276740-mRNA-1 |
| chr8_3 | CDS | 11540307 | 11540451 | 11540307 | ID=Msa1276740-mRNA-1:cds;Parent=Msa1276740-mRNA-1 |
| chr8_3 | CDS | 11538623 | 11538754 | 11538623 | ID=Msa1276740-mRNA-1:cds;Parent=Msa1276740-mRNA-1 |
| chr8_3 | CDS | 11537783 | 11538076 | 11537783 | ID=Msa1276740-mRNA-1:cds;Parent=Msa1276740-mRNA-1 |
| chr8_3 | three_prime_UTR | 11537564 | 11537782 | 11537564 | ID=Msa1276740-mRNA-1:three_prime_utr;Parent=Msa1276740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
