Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234940 | XP_013444458.1 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.93e-167 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234940 | sp|Q9C5D7|CAMT3_ARATH | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.23e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234940 | I3SHI5 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 4.26e-167 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1234940 | Msa1234950 | 0.924595 | 5.708503e-90 | -8.615850e-47 |
| Msa1234940 | Msa1276740 | 0.962686 | 3.571552e-121 | -8.615850e-47 |
| Msa1234940 | Msa1315040 | 0.997855 | 1.234340e-250 | -8.615850e-47 |
| Msa1174610 | Msa1234940 | 0.911879 | 3.687453e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234940 | MtrunA17_Chr8g0344401 | 96.596 | 235 | 8 | 0 | 1 | 235 | 1 | 235 | 8.21e-171 | 469 |
| Msa1234940 | MtrunA17_Chr8g0389361 | 72.926 | 229 | 61 | 1 | 5 | 233 | 11 | 238 | 1.21e-110 | 317 |
| Msa1234940 | MtrunA17_Chr6g0487981 | 69.058 | 223 | 68 | 1 | 11 | 233 | 15 | 236 | 1.62e-103 | 299 |
| Msa1234940 | MtrunA17_Chr4g0053331 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 5.47e-94 | 275 |
| Msa1234940 | MtrunA17_Chr4g0044581 | 57.965 | 226 | 95 | 0 | 8 | 233 | 20 | 245 | 1.27e-93 | 275 |
| Msa1234940 | MtrunA17_Chr4g0053031 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 1.54e-90 | 267 |
| Msa1234940 | MtrunA17_Chr4g0053241 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 9.43e-83 | 247 |
| Msa1234940 | MtrunA17_Chr4g0053021 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 1.68e-81 | 244 |
| Msa1234940 | MtrunA17_Chr4g0051041 | 54.018 | 224 | 100 | 2 | 11 | 232 | 5 | 227 | 9.54e-80 | 239 |
| Msa1234940 | MtrunA17_Chr2g0312921 | 40.092 | 217 | 120 | 4 | 17 | 233 | 91 | 297 | 5.46e-48 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234940 | AT4G26220.1 | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.25e-103 | 300 |
| Msa1234940 | AT4G34050.3 | 57.522 | 226 | 96 | 0 | 8 | 233 | 59 | 284 | 1.05e-92 | 274 |
| Msa1234940 | AT4G34050.1 | 57.522 | 226 | 96 | 0 | 8 | 233 | 32 | 257 | 1.28e-92 | 273 |
| Msa1234940 | AT1G67980.1 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 1.85e-80 | 241 |
| Msa1234940 | AT1G24735.1 | 53.304 | 227 | 100 | 5 | 10 | 233 | 15 | 238 | 4.80e-76 | 230 |
| Msa1234940 | AT1G67990.1 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 2.90e-73 | 223 |
| Msa1234940 | AT1G24735.2 | 43.525 | 278 | 100 | 5 | 10 | 233 | 15 | 289 | 3.46e-68 | 212 |
| Msa1234940 | AT1G24735.3 | 54.144 | 181 | 79 | 3 | 54 | 233 | 16 | 193 | 1.03e-63 | 197 |
| Msa1234940 | AT1G67980.2 | 49.697 | 165 | 79 | 2 | 69 | 233 | 2 | 162 | 1.84e-47 | 154 |
| Msa1234940 | AT3G61990.1 | 40.000 | 205 | 113 | 4 | 29 | 233 | 95 | 289 | 2.39e-47 | 158 |
| Msa1234940 | AT3G62000.1 | 37.561 | 205 | 121 | 3 | 29 | 233 | 80 | 277 | 1.01e-45 | 154 |
| Msa1234940 | AT4G34050.2 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.25e-41 | 139 |
| Msa1234940 | AT3G62000.2 | 35.897 | 195 | 118 | 3 | 29 | 223 | 80 | 267 | 4.99e-38 | 135 |
Find 51 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.303172 | 8_2:+12733401 | Msa1234940:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8_2:+12732686 | Msa1234940:CDS |
| TAACACAACATAGGAAAATA+AGG | 0.329232 | 8_2:-12736075 | None:intergenic |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8_2:+12733371 | Msa1234940:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8_2:+12735813 | Msa1234940:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8_2:+12735883 | Msa1234940:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8_2:+12735851 | Msa1234940:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.379564 | 8_2:-12733402 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8_2:+12735882 | Msa1234940:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8_2:-12735203 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8_2:+12735088 | Msa1234940:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8_2:-12733513 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8_2:+12733402 | Msa1234940:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8_2:+12736035 | Msa1234940:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8_2:+12736013 | Msa1234940:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8_2:-12735923 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8_2:-12735194 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8_2:+12735854 | Msa1234940:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8_2:+12733501 | Msa1234940:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8_2:+12735900 | Msa1234940:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8_2:-12732676 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8_2:+12736019 | Msa1234940:CDS |
| ATGGGCACTGACCCTGATGC+GGG | 0.526950 | 8_2:+12733390 | Msa1234940:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8_2:-12732675 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8_2:-12735897 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8_2:+12733372 | Msa1234940:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8_2:+12733506 | Msa1234940:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8_2:+12735927 | Msa1234940:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8_2:+12732493 | Msa1234940:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8_2:-12732665 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8_2:+12735884 | Msa1234940:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8_2:-12735841 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8_2:+12735116 | Msa1234940:CDS |
| ATTATGTATGATTAGTGTGG+TGG | 0.558384 | 8_2:+12736209 | Msa1234940:three_prime_UTR |
| CACTAATCATACATAATCAA+AGG | 0.559292 | 8_2:-12736203 | None:intergenic |
| CATGGGCACTGACCCTGATG+CGG | 0.559626 | 8_2:+12733389 | Msa1234940:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8_2:-12735898 | None:intergenic |
| ATTCAACCATAACACAACAT+AGG | 0.564400 | 8_2:-12736084 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8_2:+12732509 | Msa1234940:CDS |
| TGTTTCGTTTGATGTCGAGA+AGG | 0.567913 | 8_2:+12736248 | Msa1234940:three_prime_UTR |
| TTGATTATGTATGATTAGTG+TGG | 0.584545 | 8_2:+12736206 | Msa1234940:three_prime_UTR |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8_2:+12735828 | Msa1234940:CDS |
| ACTTTATCAACTATAAGTTG+TGG | 0.595815 | 8_2:+12736164 | Msa1234940:three_prime_UTR |
| GTTTCGTTTGATGTCGAGAA+GGG | 0.599932 | 8_2:+12736249 | Msa1234940:three_prime_UTR |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8_2:+12735887 | Msa1234940:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.628902 | 8_2:-12733401 | None:intergenic |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8_2:-12735804 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8_2:+12732508 | Msa1234940:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8_2:-12732713 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8_2:+12732522 | Msa1234940:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8_2:-12733494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | + | chr8_2:12732809-12732828 | Msa1234940:intron | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8_2:12732912-12732931 | Msa1234940:intron | 0.0% |
| !!! | TAATATAAATTATTTTATTT+GGG | + | chr8_2:12732913-12732932 | Msa1234940:intron | 0.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | + | chr8_2:12732571-12732590 | Msa1234940:intron | 10.0% |
| !!! | ATATAAATTATTTTATTTGG+GGG | + | chr8_2:12732915-12732934 | Msa1234940:intron | 10.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | + | chr8_2:12732548-12732567 | Msa1234940:intron | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | + | chr8_2:12732755-12732774 | Msa1234940:intron | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | - | chr8_2:12732941-12732960 | None:intergenic | 15.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | - | chr8_2:12733045-12733064 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTTTTAAAACAG+CGG | + | chr8_2:12733578-12733597 | Msa1234940:intron | 15.0% |
| !!! | TTTGTTTTTTGTTTTAGTTT+CGG | - | chr8_2:12733895-12733914 | None:intergenic | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8_2:12734153-12734172 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8_2:12734400-12734419 | None:intergenic | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8_2:12734832-12734851 | Msa1234940:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8_2:12735487-12735506 | Msa1234940:intron | 15.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8_2:12732637-12732656 | None:intergenic | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | + | chr8_2:12733225-12733244 | Msa1234940:intron | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8_2:12734043-12734062 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8_2:12734844-12734863 | Msa1234940:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8_2:12735398-12735417 | None:intergenic | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8_2:12735399-12735418 | Msa1234940:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8_2:12735779-12735798 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | + | chr8_2:12735851-12735870 | Msa1234940:CDS | 20.0% |
| !!! | ATGTACTATTGTTTTTGTTT+TGG | + | chr8_2:12736111-12736130 | Msa1234940:three_prime_UTR | 20.0% |
| !!! | TGTACTATTGTTTTTGTTTT+GGG | + | chr8_2:12736112-12736131 | Msa1234940:three_prime_UTR | 20.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | - | chr8_2:12732542-12732561 | None:intergenic | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8_2:12732729-12732748 | None:intergenic | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8_2:12732730-12732749 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | - | chr8_2:12732839-12732858 | None:intergenic | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | - | chr8_2:12732980-12732999 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | - | chr8_2:12733018-12733037 | None:intergenic | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8_2:12733030-12733049 | Msa1234940:intron | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | + | chr8_2:12733164-12733183 | Msa1234940:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | - | chr8_2:12733191-12733210 | None:intergenic | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8_2:12733447-12733466 | Msa1234940:CDS | 25.0% |
| ! | AAAAATACACATGGATATGT+TGG | - | chr8_2:12733551-12733570 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | + | chr8_2:12733550-12733569 | Msa1234940:intron | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | - | chr8_2:12733969-12733988 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | - | chr8_2:12733995-12734014 | None:intergenic | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8_2:12734066-12734085 | None:intergenic | 25.0% |
| !! | TTTCTAGTGGAAACAATATT+TGG | - | chr8_2:12734358-12734377 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8_2:12734635-12734654 | Msa1234940:intron | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8_2:12734646-12734665 | None:intergenic | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8_2:12734671-12734690 | Msa1234940:intron | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8_2:12734913-12734932 | Msa1234940:intron | 25.0% |
| ! | AACAATACTGGAAAATTGAA+CGG | - | chr8_2:12735004-12735023 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8_2:12735254-12735273 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8_2:12735493-12735512 | Msa1234940:intron | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8_2:12735659-12735678 | Msa1234940:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8_2:12735678-12735697 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8_2:12735813-12735832 | Msa1234940:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8_2:12735854-12735873 | Msa1234940:CDS | 25.0% |
| ! | TAACACAACATAGGAAAATA+AGG | - | chr8_2:12736078-12736097 | None:intergenic | 25.0% |
| !! | TATTTTCCTATGTTGTGTTA+TGG | + | chr8_2:12736078-12736097 | Msa1234940:three_prime_UTR | 25.0% |
| ! | ACTTTATCAACTATAAGTTG+TGG | + | chr8_2:12736164-12736183 | Msa1234940:three_prime_UTR | 25.0% |
| ! | CACTAATCATACATAATCAA+AGG | - | chr8_2:12736206-12736225 | None:intergenic | 25.0% |
| ! | TTGATTATGTATGATTAGTG+TGG | + | chr8_2:12736206-12736225 | Msa1234940:three_prime_UTR | 25.0% |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8_2:12732493-12732512 | Msa1234940:CDS | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | + | chr8_2:12732686-12732705 | Msa1234940:CDS | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | + | chr8_2:12732974-12732993 | Msa1234940:intron | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | - | chr8_2:12732981-12733000 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | + | chr8_2:12732978-12732997 | Msa1234940:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | - | chr8_2:12733016-12733035 | None:intergenic | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | - | chr8_2:12733017-12733036 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | + | chr8_2:12733371-12733390 | Msa1234940:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8_2:12733372-12733391 | Msa1234940:intron | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8_2:12733459-12733478 | Msa1234940:CDS | 30.0% |
| AAAGTTTGCGATAAAAAGTC+AGG | - | chr8_2:12733616-12733635 | None:intergenic | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | - | chr8_2:12733766-12733785 | None:intergenic | 30.0% | |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | + | chr8_2:12733767-12733786 | Msa1234940:intron | 30.0% |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8_2:12733793-12733812 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8_2:12733892-12733911 | None:intergenic | 30.0% |
| TAGATCAAGTTCAAATCTAG+GGG | - | chr8_2:12733994-12734013 | None:intergenic | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | - | chr8_2:12733996-12734015 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | - | chr8_2:12734037-12734056 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8_2:12734070-12734089 | Msa1234940:intron | 30.0% |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8_2:12734288-12734307 | Msa1234940:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8_2:12734289-12734308 | Msa1234940:intron | 30.0% | |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8_2:12734294-12734313 | None:intergenic | 30.0% |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8_2:12734303-12734322 | Msa1234940:intron | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8_2:12734547-12734566 | Msa1234940:intron | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8_2:12734669-12734688 | None:intergenic | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8_2:12735136-12735155 | Msa1234940:CDS | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8_2:12735206-12735225 | None:intergenic | 30.0% | |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8_2:12735250-12735269 | Msa1234940:intron | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8_2:12735657-12735676 | None:intergenic | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8_2:12735705-12735724 | Msa1234940:intron | 30.0% |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8_2:12735807-12735826 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8_2:12735882-12735901 | Msa1234940:CDS | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8_2:12735883-12735902 | Msa1234940:CDS | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8_2:12735942-12735961 | Msa1234940:CDS | 30.0% | |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8_2:12735947-12735966 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8_2:12735948-12735967 | None:intergenic | 30.0% |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8_2:12736013-12736032 | Msa1234940:CDS | 30.0% | |
| ATTCAACCATAACACAACAT+AGG | - | chr8_2:12736087-12736106 | None:intergenic | 30.0% | |
| !!! | ACTATTGTTTTTGTTTTGGG+TGG | + | chr8_2:12736115-12736134 | Msa1234940:three_prime_UTR | 30.0% |
| ATTATGTATGATTAGTGTGG+TGG | + | chr8_2:12736209-12736228 | Msa1234940:three_prime_UTR | 30.0% | |
| TATGATGGTATATTGCAGAG+TGG | + | chr8_2:12732508-12732527 | Msa1234940:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8_2:12732509-12732528 | Msa1234940:CDS | 35.0% | |
| ! | ATGATGATTTGAGGTGCAAA+CGG | - | chr8_2:12733134-12733153 | None:intergenic | 35.0% |
| GCAAGATGTATGATGATTTG+AGG | - | chr8_2:12733143-12733162 | None:intergenic | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | - | chr8_2:12733273-12733292 | None:intergenic | 35.0% | |
| ! | CTTTTACCATACATGTGTGT+TGG | + | chr8_2:12733271-12733290 | Msa1234940:intron | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8_2:12733506-12733525 | Msa1234940:CDS | 35.0% |
| TCGTACACCAAAAATACACA+TGG | - | chr8_2:12733560-12733579 | None:intergenic | 35.0% | |
| ! | GTGGATTTTCAATTGCATAG+CGG | + | chr8_2:12733698-12733717 | Msa1234940:intron | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | - | chr8_2:12733779-12733798 | None:intergenic | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | - | chr8_2:12733780-12733799 | None:intergenic | 35.0% |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8_2:12733805-12733824 | Msa1234940:intron | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8_2:12733938-12733957 | None:intergenic | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8_2:12734304-12734323 | Msa1234940:intron | 35.0% | |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8_2:12734305-12734324 | Msa1234940:intron | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8_2:12734365-12734384 | Msa1234940:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8_2:12734540-12734559 | Msa1234940:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | - | chr8_2:12734546-12734565 | None:intergenic | 35.0% | |
| ACATTGCATAATGTATGCAG+GGG | - | chr8_2:12734585-12734604 | None:intergenic | 35.0% | |
| GACATTGCATAATGTATGCA+GGG | - | chr8_2:12734586-12734605 | None:intergenic | 35.0% | |
| AGACATTGCATAATGTATGC+AGG | - | chr8_2:12734587-12734606 | None:intergenic | 35.0% | |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8_2:12734684-12734703 | Msa1234940:intron | 35.0% |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8_2:12734932-12734951 | Msa1234940:intron | 35.0% | |
| ATACTGGAAAATTGAACGGT+TGG | - | chr8_2:12735000-12735019 | None:intergenic | 35.0% | |
| TGCGTGAAAATCAACAATAC+TGG | - | chr8_2:12735016-12735035 | None:intergenic | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8_2:12735059-12735078 | None:intergenic | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8_2:12735088-12735107 | Msa1234940:intron | 35.0% | |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8_2:12735121-12735140 | None:intergenic | 35.0% |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8_2:12735140-12735159 | Msa1234940:CDS | 35.0% | |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8_2:12735146-12735165 | None:intergenic | 35.0% |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8_2:12735197-12735216 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8_2:12735343-12735362 | Msa1234940:intron | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8_2:12735720-12735739 | Msa1234940:intron | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8_2:12735828-12735847 | Msa1234940:CDS | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | - | chr8_2:12735844-12735863 | None:intergenic | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8_2:12735884-12735903 | Msa1234940:CDS | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8_2:12736035-12736054 | Msa1234940:CDS | 35.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | + | chr8_2:12732990-12733009 | Msa1234940:intron | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | + | chr8_2:12733174-12733193 | Msa1234940:intron | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8_2:12733501-12733520 | Msa1234940:CDS | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8_2:12733516-12733535 | None:intergenic | 40.0% | |
| AAACCAATCACATCTCATGC+TGG | + | chr8_2:12733651-12733670 | Msa1234940:intron | 40.0% | |
| !! | AAAAATGGGATAGTGGGTAG+TGG | + | chr8_2:12733679-12733698 | Msa1234940:intron | 40.0% |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8_2:12733934-12733953 | Msa1234940:intron | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8_2:12734366-12734385 | Msa1234940:intron | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | - | chr8_2:12734613-12734632 | None:intergenic | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | - | chr8_2:12734688-12734707 | None:intergenic | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8_2:12735045-12735064 | Msa1234940:intron | 40.0% | |
| GGTGATTTAACTCCATTGCA+TGG | + | chr8_2:12735066-12735085 | Msa1234940:intron | 40.0% | |
| GATCTACAACAACCATGCAA+TGG | - | chr8_2:12735081-12735100 | None:intergenic | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8_2:12735116-12735135 | None:intergenic | 40.0% |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8_2:12735116-12735135 | Msa1234940:CDS | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8_2:12735301-12735320 | Msa1234940:intron | 40.0% | |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8_2:12735313-12735332 | None:intergenic | 40.0% |
| ATATGGACACGAACACGATA+CGG | + | chr8_2:12735510-12735529 | Msa1234940:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8_2:12735646-12735665 | None:intergenic | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8_2:12736019-12736038 | Msa1234940:CDS | 40.0% | |
| TGTTTCGTTTGATGTCGAGA+AGG | + | chr8_2:12736248-12736267 | Msa1234940:three_prime_UTR | 40.0% | |
| GTTTCGTTTGATGTCGAGAA+GGG | + | chr8_2:12736249-12736268 | Msa1234940:three_prime_UTR | 40.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | - | chr8_2:12732668-12732687 | None:intergenic | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | - | chr8_2:12732678-12732697 | None:intergenic | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | - | chr8_2:12732679-12732698 | None:intergenic | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | - | chr8_2:12733280-12733299 | None:intergenic | 45.0% | |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8_2:12733497-12733516 | None:intergenic | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | - | chr8_2:12733677-12733696 | None:intergenic | 45.0% |
| TAGTAATTCGGGGTTCAGTC+AGG | + | chr8_2:12734315-12734334 | Msa1234940:intron | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | + | chr8_2:12734691-12734710 | Msa1234940:intron | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8_2:12735887-12735906 | Msa1234940:CDS | 45.0% |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8_2:12735926-12735945 | None:intergenic | 45.0% | |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8_2:12735927-12735946 | Msa1234940:CDS | 45.0% | |
| !!! | AATATAAATTATTTTATTTG+GGG | + | chr8_2:12732914-12732933 | Msa1234940:intron | 5.0% |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | - | chr8_2:12732948-12732967 | None:intergenic | 5.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | + | chr8_2:12732947-12732966 | Msa1234940:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | + | chr8_2:12733361-12733380 | Msa1234940:intron | 5.0% |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8_2:12732522-12732541 | Msa1234940:CDS | 50.0% | |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8_2:12732716-12732735 | None:intergenic | 50.0% |
| CAATCACATCTCATGCTGGC+CGG | + | chr8_2:12733655-12733674 | Msa1234940:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | + | chr8_2:12733665-12733684 | Msa1234940:intron | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | + | chr8_2:12733673-12733692 | Msa1234940:intron | 50.0% | |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8_2:12734371-12734390 | None:intergenic | 50.0% |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | + | chr8_2:12734559-12734578 | Msa1234940:intron | 50.0% |
| TGCATAATGTATGCAGGGGC+CGG | - | chr8_2:12734581-12734600 | None:intergenic | 50.0% | |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | + | chr8_2:12734692-12734711 | Msa1234940:intron | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | + | chr8_2:12734693-12734712 | Msa1234940:intron | 50.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8_2:12735608-12735627 | Msa1234940:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8_2:12735630-12735649 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8_2:12735900-12735919 | None:intergenic | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8_2:12735901-12735920 | None:intergenic | 50.0% | |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8_2:12735900-12735919 | Msa1234940:CDS | 50.0% |
| ! | TGAAATGCGGGGCCGACTTA+AGG | - | chr8_2:12733005-12733024 | None:intergenic | 55.0% |
| CCATTAGCTGACCCGCATCA+GGG | - | chr8_2:12733404-12733423 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | + | chr8_2:12733402-12733421 | Msa1234940:CDS | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | - | chr8_2:12733657-12733676 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | + | chr8_2:12733664-12733683 | Msa1234940:intron | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | + | chr8_2:12733672-12733691 | Msa1234940:intron | 55.0% | |
| CATAATGTATGCAGGGGCCG+GGG | - | chr8_2:12734579-12734598 | None:intergenic | 55.0% | |
| GCATAATGTATGCAGGGGCC+GGG | - | chr8_2:12734580-12734599 | None:intergenic | 55.0% | |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8_2:12735626-12735645 | Msa1234940:intron | 55.0% | |
| !! | CATGGGCACTGACCCTGATG+CGG | + | chr8_2:12733389-12733408 | Msa1234940:CDS | 60.0% |
| !! | ATGGGCACTGACCCTGATGC+GGG | + | chr8_2:12733390-12733409 | Msa1234940:CDS | 60.0% |
| CCCTGATGCGGGTCAGCTAA+TGG | + | chr8_2:12733401-12733420 | Msa1234940:CDS | 60.0% | |
| CCCATTAGCTGACCCGCATC+AGG | - | chr8_2:12733405-12733424 | None:intergenic | 60.0% | |
| TGTCGTGTCCGACGTCGACA+CGG | - | chr8_2:12735596-12735615 | None:intergenic | 60.0% | |
| ! | TGTCCGTGCCGTGTCGACGT+CGG | + | chr8_2:12735585-12735604 | Msa1234940:intron | 65.0% |
| TGTCCGACGTCGACACGGCA+CGG | - | chr8_2:12735591-12735610 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 12732470 | 12736288 | 12732470 | ID=Msa1234940;Name=Msa1234940 |
| chr8_2 | mRNA | 12732470 | 12736288 | 12732470 | ID=Msa1234940-mRNA-1;Parent=Msa1234940;Name=Msa1234940-mRNA-1;_AED=0.28;_eAED=0.28;_QI=17|1|1|1|1|1|5|219|235 |
| chr8_2 | exon | 12732470 | 12732543 | 12732470 | ID=Msa1234940-mRNA-1:exon:4962;Parent=Msa1234940-mRNA-1 |
| chr8_2 | exon | 12732652 | 12732731 | 12732652 | ID=Msa1234940-mRNA-1:exon:4963;Parent=Msa1234940-mRNA-1 |
| chr8_2 | exon | 12733383 | 12733527 | 12733383 | ID=Msa1234940-mRNA-1:exon:4964;Parent=Msa1234940-mRNA-1 |
| chr8_2 | exon | 12735098 | 12735229 | 12735098 | ID=Msa1234940-mRNA-1:exon:4965;Parent=Msa1234940-mRNA-1 |
| chr8_2 | exon | 12735776 | 12736288 | 12735776 | ID=Msa1234940-mRNA-1:exon:4966;Parent=Msa1234940-mRNA-1 |
| chr8_2 | five_prime_UTR | 12732470 | 12732486 | 12732470 | ID=Msa1234940-mRNA-1:five_prime_utr;Parent=Msa1234940-mRNA-1 |
| chr8_2 | CDS | 12732487 | 12732543 | 12732487 | ID=Msa1234940-mRNA-1:cds;Parent=Msa1234940-mRNA-1 |
| chr8_2 | CDS | 12732652 | 12732731 | 12732652 | ID=Msa1234940-mRNA-1:cds;Parent=Msa1234940-mRNA-1 |
| chr8_2 | CDS | 12733383 | 12733527 | 12733383 | ID=Msa1234940-mRNA-1:cds;Parent=Msa1234940-mRNA-1 |
| chr8_2 | CDS | 12735098 | 12735229 | 12735098 | ID=Msa1234940-mRNA-1:cds;Parent=Msa1234940-mRNA-1 |
| chr8_2 | CDS | 12735776 | 12736069 | 12735776 | ID=Msa1234940-mRNA-1:cds;Parent=Msa1234940-mRNA-1 |
| chr8_2 | three_prime_UTR | 12736070 | 12736288 | 12736070 | ID=Msa1234940-mRNA-1:three_prime_utr;Parent=Msa1234940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
