AlfalfaGEDB | Msa1174800

M. sativa cultivar zhongmu-4 / Msa1174800

KEGG: K13464
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1174800	XP_013444474.1	95.319	235	11	0	1	235	1	235	1.85e-163	461

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1174800	sp\|C6TCZ5\|JAZ1_SOYBN	70.638	235	66	2	1	235	1	232	7.14e-111	320

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1174800	TF	Tify

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0203400	Msa1174800	0.816250	6.091471e-52	-8.615850e-47
Msa1174800	Msa1234910	0.882554	9.448210e-71	-8.615850e-47
Msa1174800	Msa1276810	0.904754	8.815752e-80	-8.615850e-47
Msa1174800	Msa1314960	0.898478	5.103291e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1174800	MtrunA17_Chr8g0344481	95.319	235	11	0	1	235	1	235	1.70e-167	461
Msa1174800	MtrunA17_Chr2g0301131	32.328	232	118	7	11	210	12	236	1.28e-22	92.8
Msa1174800	MtrunA17_Chr5g0399881	33.071	127	70	4	85	208	24	138	4.66e-14	67.8
Msa1174800	MtrunA17_Chr5g0399861	30.882	136	72	4	79	208	19	138	6.91e-13	64.7
Msa1174800	MtrunA17_Chr4g0070271	30.693	202	100	7	11	208	12	177	2.06e-12	63.9
Msa1174800	MtrunA17_Chr5g0399851	30.508	118	79	1	91	208	7	121	5.33e-12	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1174800	AT1G72450.1	34.545	220	114	7	15	212	3	214	6.80e-24	96.7
Msa1174800	AT1G17380.1	32.407	216	113	6	17	212	11	213	1.18e-18	82.8
Msa1174800	AT1G72450.2	32.692	208	110	6	15	200	3	202	8.01e-18	79.3
Msa1174800	AT1G19180.1	32.143	224	117	8	12	209	14	228	1.03e-17	79.7
Msa1174800	AT1G19180.3	32.143	224	117	8	12	209	14	228	1.03e-17	79.7
Msa1174800	AT1G74950.1	30.159	252	138	10	1	223	1	243	2.71e-16	75.9
Msa1174800	AT1G17380.2	34.194	155	77	5	99	230	63	215	5.79e-13	66.6
Msa1174800	AT1G17380.3	30.392	204	112	5	16	202	10	200	1.01e-12	65.5
Msa1174800	AT1G19180.2	35.345	116	71	3	96	209	49	162	2.25e-12	63.9
Msa1174800	AT1G74950.2	28.634	227	129	9	1	200	1	221	5.43e-11	60.8

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Find 62 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTAGCTAATACTGTGT+CGG	0.588601	8_1:-5976414	Msa1174800:CDS
AACATGCAAAATTCAGATGG+GGG	0.635592	8_1:-5975944	Msa1174800:CDS
AACTAAATCACTATAAGTTA+AGG	0.443726	8_1:+5974152	None:intergenic
AACTAATTTACCTGAACATT+TGG	0.278582	8_1:+5974550	None:intergenic
AAGGCCACAACAATCTTCTT+AGG	0.212839	8_1:+5974070	None:intergenic
AATCTTCTTAGGGCATAGTT+AGG	0.380172	8_1:+5974081	None:intergenic
AATTGACGATATTCTATTCC+GGG	0.411302	8_1:-5974766	Msa1174800:CDS
ACCTGCTTTCTTTGGGAAAA+TGG	0.109042	8_1:-5976285	Msa1174800:CDS
ACTAGTGACCGGTGCACTTG+GGG	0.487227	8_1:+5974643	None:intergenic
ACTTTAGGTTATACATGTTT+TGG	0.324420	8_1:-5974121	Msa1174800:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGTAGATAAAGACCACA+TGG	-	chr8_1:5973951-5973970	Msa1174800:three_prime_UTR	30.0%
GAAGAAAGAAACTATGAACT+AGG	+	chr8_1:5974038-5974057	None:intergenic	30.0%
TGTGAAAATTTGAACTTCTC+CGG	+	chr8_1:5974190-5974209	None:intergenic	30.0%
TTGAAGGAAAAGAGAATTTC+TGG	-	chr8_1:5974235-5974254	Msa1174800:CDS	30.0%
TTCTTGCCTTGTCAATTAAT+TGG	-	chr8_1:5974376-5974395	Msa1174800:intron	30.0%
AACCAACCAATTAATTGACA+AGG	+	chr8_1:5974385-5974404	None:intergenic	30.0%
TTTAGCAAGTACAAAGGATT+TGG	-	chr8_1:5974580-5974599	Msa1174800:CDS	30.0%
GTATTAGACTTCTTAATGCA+AGG	+	chr8_1:5974686-5974705	None:intergenic	30.0%
GCATTAAGAAGTCTAATACA+AGG	-	chr8_1:5974687-5974706	Msa1174800:CDS	30.0%
CATGACTAACCTAATTTACA+TGG	+	chr8_1:5974868-5974887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	5973860	5976714	5973860	ID=Msa1174800;Name=Msa1174800
chr8_1	mRNA	5973860	5976714	5973860	ID=Msa1174800-mRNA-1;Parent=Msa1174800;Name=Msa1174800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=273\|1\|1\|1\|1\|1\|5\|302\|235
chr8_1	exon	5973860	5974270	5973860	ID=Msa1174800-mRNA-1:exon:2024;Parent=Msa1174800-mRNA-1
chr8_1	exon	5974378	5974435	5974378	ID=Msa1174800-mRNA-1:exon:2023;Parent=Msa1174800-mRNA-1
chr8_1	exon	5974561	5974811	5974561	ID=Msa1174800-mRNA-1:exon:2022;Parent=Msa1174800-mRNA-1
chr8_1	exon	5975866	5975989	5975866	ID=Msa1174800-mRNA-1:exon:2021;Parent=Msa1174800-mRNA-1
chr8_1	exon	5976276	5976714	5976276	ID=Msa1174800-mRNA-1:exon:2020;Parent=Msa1174800-mRNA-1
chr8_1	five_prime_UTR	5976442	5976714	5976442	ID=Msa1174800-mRNA-1:five_prime_utr;Parent=Msa1174800-mRNA-1
chr8_1	CDS	5976276	5976441	5976276	ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1
chr8_1	CDS	5975866	5975989	5975866	ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1
chr8_1	CDS	5974561	5974811	5974561	ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1
chr8_1	CDS	5974378	5974435	5974378	ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1
chr8_1	CDS	5974162	5974270	5974162	ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1
chr8_1	three_prime_UTR	5973860	5974161	5973860	ID=Msa1174800-mRNA-1:three_prime_utr;Parent=Msa1174800-mRNA-1

Gene Sequence

>Msa1174800

ATGTCAAATTTAGCTAATACTGTGTCGGATGGCCGGAGACTCACCGGTAAGGCACCGGAGAAGTTCAAATTTTCACAGACTTGTAGTCTTTTGAGTCAGTTCTTGAAGGAAAAGAGAATTTCTGGTGATTCTACACCTGCTTTCTTTGGGAAAATGGAACCTAAAGCAAGTACAAAGGATTTGGTAGCCAACATGCAAAATTCAGATGGGGGTTTGAGACTAAATGCATCTGCTATTGAATCTCTTCCTCAGCTTGTGGAAAATCCTTGCATTAAGAAGTCTAATACAAGATCAACAGATCCTAAAACTCCACAATTGACGATATTCTATTCCGGGAAAATGTTAGTATTTGACGCTTTTTCGCCTACGAATGCAACTGAGATCATGGAGTTGGCCACCAAATTAGCCTCTGAAAATCCAAGCGCTGAAGAAAACCCCCCAAGTGCACCGGTCACTAGTGAAAAATTAAAGGAGCCCGAAATTCCTCAAACAAACACTGCCTTAGAAACAACCGAACAAGGAAACCAAGCCAAATGTTCAGATATGAGATATCCAAGAAGAGCTTCACTTCTTAAATTTCTTGAGAAAAGAAAAGAAAGGGTCATTGCTAGAGGACCCTATCAAATTAATGGTCACAAAAATGAGGGTAGTAGTTCTGGAAGTGAACCTAAAGATAATTCTTCCGATCAATTCGACCTTAACTTATAG

Protein sequence

>Msa1174800

MSNLANTVSDGRRLTGKAPEKFKFSQTCSLLSQFLKEKRISGDSTPAFFGKMEPKASTKDLVANMQNSDGGLRLNASAIESLPQLVENPCIKKSNTRSTDPKTPQLTIFYSGKMLVFDAFSPTNATEIMELATKLASENPSAEENPPSAPVTSEKLKEPEIPQTNTALETTEQGNQAKCSDMRYPRRASLLKFLEKRKERVIARGPYQINGHKNEGSSSGSEPKDNSSDQFDLNL*