Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174800 | XP_013444474.1 | 95.319 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.85e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174800 | sp|C6TCZ5|JAZ1_SOYBN | 70.638 | 235 | 66 | 2 | 1 | 235 | 1 | 232 | 7.14e-111 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1174800 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203400 | Msa1174800 | 0.816250 | 6.091471e-52 | -8.615850e-47 |
| Msa1174800 | Msa1234910 | 0.882554 | 9.448210e-71 | -8.615850e-47 |
| Msa1174800 | Msa1276810 | 0.904754 | 8.815752e-80 | -8.615850e-47 |
| Msa1174800 | Msa1314960 | 0.898478 | 5.103291e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174800 | MtrunA17_Chr8g0344481 | 95.319 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.70e-167 | 461 |
| Msa1174800 | MtrunA17_Chr2g0301131 | 32.328 | 232 | 118 | 7 | 11 | 210 | 12 | 236 | 1.28e-22 | 92.8 |
| Msa1174800 | MtrunA17_Chr5g0399881 | 33.071 | 127 | 70 | 4 | 85 | 208 | 24 | 138 | 4.66e-14 | 67.8 |
| Msa1174800 | MtrunA17_Chr5g0399861 | 30.882 | 136 | 72 | 4 | 79 | 208 | 19 | 138 | 6.91e-13 | 64.7 |
| Msa1174800 | MtrunA17_Chr4g0070271 | 30.693 | 202 | 100 | 7 | 11 | 208 | 12 | 177 | 2.06e-12 | 63.9 |
| Msa1174800 | MtrunA17_Chr5g0399851 | 30.508 | 118 | 79 | 1 | 91 | 208 | 7 | 121 | 5.33e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1174800 | AT1G72450.1 | 34.545 | 220 | 114 | 7 | 15 | 212 | 3 | 214 | 6.80e-24 | 96.7 |
| Msa1174800 | AT1G17380.1 | 32.407 | 216 | 113 | 6 | 17 | 212 | 11 | 213 | 1.18e-18 | 82.8 |
| Msa1174800 | AT1G72450.2 | 32.692 | 208 | 110 | 6 | 15 | 200 | 3 | 202 | 8.01e-18 | 79.3 |
| Msa1174800 | AT1G19180.1 | 32.143 | 224 | 117 | 8 | 12 | 209 | 14 | 228 | 1.03e-17 | 79.7 |
| Msa1174800 | AT1G19180.3 | 32.143 | 224 | 117 | 8 | 12 | 209 | 14 | 228 | 1.03e-17 | 79.7 |
| Msa1174800 | AT1G74950.1 | 30.159 | 252 | 138 | 10 | 1 | 223 | 1 | 243 | 2.71e-16 | 75.9 |
| Msa1174800 | AT1G17380.2 | 34.194 | 155 | 77 | 5 | 99 | 230 | 63 | 215 | 5.79e-13 | 66.6 |
| Msa1174800 | AT1G17380.3 | 30.392 | 204 | 112 | 5 | 16 | 202 | 10 | 200 | 1.01e-12 | 65.5 |
| Msa1174800 | AT1G19180.2 | 35.345 | 116 | 71 | 3 | 96 | 209 | 49 | 162 | 2.25e-12 | 63.9 |
| Msa1174800 | AT1G74950.2 | 28.634 | 227 | 129 | 9 | 1 | 200 | 1 | 221 | 5.43e-11 | 60.8 |
Find 62 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTTTCTTTGGGAAAA+TGG | 0.109042 | 8_1:-5976285 | Msa1174800:CDS |
| TTGAAGGAAAAGAGAATTTC+TGG | 0.175716 | 8_1:-5976317 | Msa1174800:CDS |
| AAGGCCACAACAATCTTCTT+AGG | 0.212839 | 8_1:+5974070 | None:intergenic |
| GATTCTACACCTGCTTTCTT+TGG | 0.212849 | 8_1:-5976293 | Msa1174800:CDS |
| TTTAGTTCATCTTGAACTTT+AGG | 0.228550 | 8_1:-5974136 | Msa1174800:three_prime_UTR |
| TTAAGAAGTGAAGCTCTTCT+TGG | 0.236604 | 8_1:+5974402 | None:intergenic |
| GTGTTTGTTTGAGGAATTTC+GGG | 0.278263 | 8_1:+5974605 | None:intergenic |
| AACTAATTTACCTGAACATT+TGG | 0.278582 | 8_1:+5974550 | None:intergenic |
| TCCTTGTTCGGTTGTTTCTA+AGG | 0.284638 | 8_1:+5974580 | None:intergenic |
| GAACTTCTCCGGTGCCTTAC+CGG | 0.289709 | 8_1:+5976376 | None:intergenic |
| AGTGTTTGTTTGAGGAATTT+CGG | 0.311669 | 8_1:+5974604 | None:intergenic |
| TGATCGGAAGAATTATCTTT+AGG | 0.316360 | 8_1:+5974181 | None:intergenic |
| ACTTTAGGTTATACATGTTT+TGG | 0.324420 | 8_1:-5974121 | Msa1174800:three_prime_UTR |
| TTTAGCAAGTACAAAGGATT+TGG | 0.328930 | 8_1:-5975972 | Msa1174800:intron |
| AGAGGACCCTATCAAATTAA+TGG | 0.329656 | 8_1:-5974238 | Msa1174800:CDS |
| TTTGTGACCATTAATTTGAT+AGG | 0.341555 | 8_1:+5974231 | None:intergenic |
| CAATTGACGATATTCTATTC+CGG | 0.343572 | 8_1:-5974767 | Msa1174800:CDS |
| TATTATGTTATCAATCAATT+AGG | 0.344670 | 8_1:-5974005 | Msa1174800:three_prime_UTR |
| TTTGGCTTGGTTTCCTTGTT+CGG | 0.349316 | 8_1:+5974568 | None:intergenic |
| ATTCTACACCTGCTTTCTTT+GGG | 0.379166 | 8_1:-5976292 | Msa1174800:CDS |
| AATCTTCTTAGGGCATAGTT+AGG | 0.380172 | 8_1:+5974081 | None:intergenic |
| GGAAACCAAGCCAAATGTTC+AGG | 0.389691 | 8_1:-5974560 | Msa1174800:intron |
| TCAATTAGGTCCAATGCTTT+CGG | 0.391973 | 8_1:-5973991 | Msa1174800:three_prime_UTR |
| CTTGTTCGTTGAATCTGCTT+TGG | 0.392047 | 8_1:+5976564 | None:intergenic |
| CACTAGTGACCGGTGCACTT+GGG | 0.400373 | 8_1:+5974642 | None:intergenic |
| AATTGACGATATTCTATTCC+GGG | 0.411302 | 8_1:-5974766 | Msa1174800:CDS |
| TCACTAGTGACCGGTGCACT+TGG | 0.422956 | 8_1:+5974641 | None:intergenic |
| TAAATCTATATGAAGATTGA+AGG | 0.439481 | 8_1:+5974051 | None:intergenic |
| AACTAAATCACTATAAGTTA+AGG | 0.443726 | 8_1:+5974152 | None:intergenic |
| GTGCCTTACCGGTGAGTCTC+CGG | 0.457733 | 8_1:+5976387 | None:intergenic |
| TGTGAAAATTTGAACTTCTC+CGG | 0.466884 | 8_1:+5976365 | None:intergenic |
| TCTAAGGCAGTGTTTGTTTG+AGG | 0.469946 | 8_1:+5974596 | None:intergenic |
| TTTGGGAAAATGGAACCTAA+AGG | 0.472484 | 8_1:-5976275 | Msa1174800:intron |
| TTGTGACCATTAATTTGATA+GGG | 0.477946 | 8_1:+5974232 | None:intergenic |
| ACTAGTGACCGGTGCACTTG+GGG | 0.487227 | 8_1:+5974643 | None:intergenic |
| TACGAATGCAACTGAGATCA+TGG | 0.488655 | 8_1:-5974714 | Msa1174800:CDS |
| CTAATACTGTGTCGGATGGC+CGG | 0.499466 | 8_1:-5976406 | Msa1174800:CDS |
| AGGCCACAACAATCTTCTTA+GGG | 0.511789 | 8_1:+5974071 | None:intergenic |
| ATTTACCTGAACATTTGGCT+TGG | 0.519424 | 8_1:+5974555 | None:intergenic |
| GTATTAGACTTCTTAATGCA+AGG | 0.531343 | 8_1:+5975869 | None:intergenic |
| TGAATCTCTTCCTCAGCTTG+TGG | 0.531942 | 8_1:-5975897 | Msa1174800:CDS |
| GCCAACATGCAAAATTCAGA+TGG | 0.539238 | 8_1:-5975947 | Msa1174800:CDS |
| TCGGATGGCCGGAGACTCAC+CGG | 0.544946 | 8_1:-5976395 | Msa1174800:CDS |
| CCAACATGCAAAATTCAGAT+GGG | 0.548796 | 8_1:-5975946 | Msa1174800:CDS |
| CTAGTGACCGGTGCACTTGG+GGG | 0.549856 | 8_1:+5974644 | None:intergenic |
| TGCAACTGAGATCATGGAGT+TGG | 0.557096 | 8_1:-5974708 | Msa1174800:CDS |
| TAAGTTAAGGTCGAATTGAT+CGG | 0.557387 | 8_1:+5974165 | None:intergenic |
| GAAGAAAGAAACTATGAACT+AGG | 0.564784 | 8_1:+5976517 | None:intergenic |
| GAGACTCACCGGTAAGGCAC+CGG | 0.568974 | 8_1:-5976384 | Msa1174800:CDS |
| TTCTTGAGAAAAGAAAAGAA+AGG | 0.577298 | 8_1:-5974377 | Msa1174800:intron |
| GAATAGAATATCGTCAATTG+TGG | 0.583205 | 8_1:+5974770 | None:intergenic |
| GCCTTAGAAACAACCGAACA+AGG | 0.584084 | 8_1:-5974581 | Msa1174800:CDS |
| AAATTTAGCTAATACTGTGT+CGG | 0.588601 | 8_1:-5976414 | Msa1174800:CDS |
| ATGATCTCAGTTGCATTCGT+AGG | 0.602248 | 8_1:+5974716 | None:intergenic |
| TGTTGCAGGGTCATTGCTAG+AGG | 0.603165 | 8_1:-5974256 | Msa1174800:intron |
| TTAGCTAATACTGTGTCGGA+TGG | 0.619524 | 8_1:-5976410 | Msa1174800:CDS |
| CAACATGCAAAATTCAGATG+GGG | 0.624122 | 8_1:-5975945 | Msa1174800:CDS |
| AACATGCAAAATTCAGATGG+GGG | 0.635592 | 8_1:-5975944 | Msa1174800:CDS |
| GCATTAAGAAGTCTAATACA+AGG | 0.639363 | 8_1:-5975865 | Msa1174800:intron |
| ATGCCCTAAGAAGATTGTTG+TGG | 0.644601 | 8_1:-5974074 | Msa1174800:three_prime_UTR |
| TTATGTAGATAAAGACCACA+TGG | 0.687381 | 8_1:-5976601 | Msa1174800:five_prime_UTR |
| GTCTGAACTATGAGACCATG+TGG | 0.700545 | 8_1:+5976586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAATTAAATT+AGG | + | chr8_1:5974420-5974439 | None:intergenic | 0.0% |
| !!! | ATTATTATTTTGTTACAAAA+TGG | - | chr8_1:5974431-5974450 | Msa1174800:intron | 10.0% |
| !!! | GATATTAGTATATTGTTTTT+TGG | + | chr8_1:5973873-5973892 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTATTTCTTACT+TGG | - | chr8_1:5974325-5974344 | Msa1174800:intron | 15.0% |
| !!! | TTTAGTATTGGAAAATTATT+GGG | - | chr8_1:5974463-5974482 | Msa1174800:intron | 15.0% |
| !!! | AAAAAATTGCTTTAATTTTC+TGG | - | chr8_1:5974794-5974813 | Msa1174800:intron | 15.0% |
| !!! | ATATTGGTTAGAATAATAAT+TGG | - | chr8_1:5975346-5975365 | Msa1174800:intron | 15.0% |
| !!! | TGTAAATTAATTTTATTGTG+AGG | + | chr8_1:5975601-5975620 | None:intergenic | 15.0% |
| !!! | TTTAGAGTATCATTTTATTT+TGG | + | chr8_1:5975625-5975644 | None:intergenic | 15.0% |
| !! | AAATATATATTGTAAGAGTT+TGG | - | chr8_1:5975701-5975720 | Msa1174800:intron | 15.0% |
| !!! | AAGAAATAGAAATTTTTAAC+TGG | + | chr8_1:5976207-5976226 | None:intergenic | 15.0% |
| !! | TATTATGTTATCAATCAATT+AGG | - | chr8_1:5976547-5976566 | Msa1174800:five_prime_UTR | 15.0% |
| !!! | GTAAAGTTAAGATTTTTTGT+TGG | - | chr8_1:5974094-5974113 | Msa1174800:three_prime_UTR | 20.0% |
| !!! | GTTTAGTATTGGAAAATTAT+TGG | - | chr8_1:5974462-5974481 | Msa1174800:intron | 20.0% |
| !! | GTATTTCTTAGTAATTTCAT+AGG | + | chr8_1:5974820-5974839 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCCATGTAAATT+AGG | - | chr8_1:5974856-5974875 | Msa1174800:intron | 20.0% |
| !!! | TAAATAAGTGTAGATTTGTT+TGG | - | chr8_1:5975275-5975294 | Msa1174800:intron | 20.0% |
| !!! | AATCTTTCATTTTGATCTTT+TGG | + | chr8_1:5975433-5975452 | None:intergenic | 20.0% |
| !! | AACTAAATCACTATAAGTTA+AGG | + | chr8_1:5976403-5976422 | None:intergenic | 20.0% |
| !! | TAAATCTATATGAAGATTGA+AGG | + | chr8_1:5976504-5976523 | None:intergenic | 20.0% |
| !! | AATCACATGTATTCAAAAAA+TGG | + | chr8_1:5976691-5976710 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATACATGTGATT+TGG | - | chr8_1:5976691-5976710 | Msa1174800:five_prime_UTR | 20.0% |
| !!! | AAGTTAAGATTTTTTGTTGG+TGG | - | chr8_1:5974097-5974116 | Msa1174800:three_prime_UTR | 25.0% |
| !!! | AGTTAAGATTTTTTGTTGGT+GGG | - | chr8_1:5974098-5974117 | Msa1174800:three_prime_UTR | 25.0% |
| ! | AAATTTAGCTAATACTGTGT+CGG | - | chr8_1:5974138-5974157 | Msa1174800:three_prime_UTR | 25.0% |
| ! | AAGAGAAAGATTATACCTTT+AGG | + | chr8_1:5974295-5974314 | None:intergenic | 25.0% |
| !! | ATAATCTTTCTCTTGTTTCA+TGG | - | chr8_1:5974301-5974320 | Msa1174800:intron | 25.0% |
| ! | TTGTTACAAAATGGATGATT+TGG | - | chr8_1:5974440-5974459 | Msa1174800:intron | 25.0% |
| !!! | TGGAAAAACATTTTGATAGT+AGG | + | chr8_1:5974848-5974867 | None:intergenic | 25.0% |
| !! | ATGTAAATTAGGTTAGTCAT+GGG | - | chr8_1:5974867-5974886 | Msa1174800:intron | 25.0% |
| !!! | GATACAATTCAGTTTTGAAA+AGG | - | chr8_1:5974902-5974921 | Msa1174800:intron | 25.0% |
| ! | CTAGATCTATTTATACAAAG+TGG | - | chr8_1:5974964-5974983 | Msa1174800:intron | 25.0% |
| ! | ATCTTGATTAAAACAATCGT+CGG | - | chr8_1:5975045-5975064 | Msa1174800:intron | 25.0% |
| !! | AACAGATCTATACTTCTTTT+TGG | + | chr8_1:5975113-5975132 | None:intergenic | 25.0% |
| !! | AGGTTGAAGTATTAATGATA+TGG | + | chr8_1:5975501-5975520 | None:intergenic | 25.0% |
| !! | TACATGTTAGTGATCAATTT+TGG | + | chr8_1:5975530-5975549 | None:intergenic | 25.0% |
| ! | ATAAACAACAATAAGAACAC+TGG | + | chr8_1:5975732-5975751 | None:intergenic | 25.0% |
| !!! | TTTAATTTTTCACTAGTGAC+CGG | + | chr8_1:5975923-5975942 | None:intergenic | 25.0% |
| ! | AACTAATTTACCTGAACATT+TGG | + | chr8_1:5976005-5976024 | None:intergenic | 25.0% |
| ! | TTCTTGAGAAAAGAAAAGAA+AGG | - | chr8_1:5976175-5976194 | Msa1174800:intron | 25.0% |
| ! | CAAAAATAGACAACATACAA+AGG | + | chr8_1:5976245-5976264 | None:intergenic | 25.0% |
| !!! | TGTATGTTGTCTATTTTTGT+TGG | - | chr8_1:5976246-5976265 | Msa1174800:intron | 25.0% |
| ! | CAAGATTCAATTAATTAGCA+TGG | + | chr8_1:5976273-5976292 | None:intergenic | 25.0% |
| !! | TTGTGACCATTAATTTGATA+GGG | + | chr8_1:5976323-5976342 | None:intergenic | 25.0% |
| !! | TTTGTGACCATTAATTTGAT+AGG | + | chr8_1:5976324-5976343 | None:intergenic | 25.0% |
| ! | AATTAATGGTCACAAAAATG+AGG | - | chr8_1:5976328-5976347 | Msa1174800:CDS | 25.0% |
| ! | ATTAATGGTCACAAAAATGA+GGG | - | chr8_1:5976329-5976348 | Msa1174800:CDS | 25.0% |
| !! | TTTAGTTCATCTTGAACTTT+AGG | - | chr8_1:5976416-5976435 | Msa1174800:CDS | 25.0% |
| !!! | ACTTTAGGTTATACATGTTT+TGG | - | chr8_1:5976431-5976450 | Msa1174800:exon | 25.0% |
| TTATGTAGATAAAGACCACA+TGG | - | chr8_1:5973951-5973970 | Msa1174800:three_prime_UTR | 30.0% | |
| GAAGAAAGAAACTATGAACT+AGG | + | chr8_1:5974038-5974057 | None:intergenic | 30.0% | |
| !!! | GTTAAGATTTTTTGTTGGTG+GGG | - | chr8_1:5974099-5974118 | Msa1174800:three_prime_UTR | 30.0% |
| TGTGAAAATTTGAACTTCTC+CGG | + | chr8_1:5974190-5974209 | None:intergenic | 30.0% | |
| TTGAAGGAAAAGAGAATTTC+TGG | - | chr8_1:5974235-5974254 | Msa1174800:CDS | 30.0% | |
| TTCTTGCCTTGTCAATTAAT+TGG | - | chr8_1:5974376-5974395 | Msa1174800:intron | 30.0% | |
| AACCAACCAATTAATTGACA+AGG | + | chr8_1:5974385-5974404 | None:intergenic | 30.0% | |
| !! | TGGATGATTTGGTTTAGTAT+TGG | - | chr8_1:5974451-5974470 | Msa1174800:intron | 30.0% |
| !!! | AGTTTGCTGATTGTGTTTTT+TGG | - | chr8_1:5974547-5974566 | Msa1174800:intron | 30.0% |
| !!! | GGATTTTTTAGCAAGTACAA+AGG | - | chr8_1:5974574-5974593 | Msa1174800:CDS | 30.0% |
| TTTAGCAAGTACAAAGGATT+TGG | - | chr8_1:5974580-5974599 | Msa1174800:CDS | 30.0% | |
| GTATTAGACTTCTTAATGCA+AGG | + | chr8_1:5974686-5974705 | None:intergenic | 30.0% | |
| GCATTAAGAAGTCTAATACA+AGG | - | chr8_1:5974687-5974706 | Msa1174800:CDS | 30.0% | |
| CATGACTAACCTAATTTACA+TGG | + | chr8_1:5974868-5974887 | None:intergenic | 30.0% | |
| ! | CATGTAAATTAGGTTAGTCA+TGG | - | chr8_1:5974866-5974885 | Msa1174800:intron | 30.0% |
| TTAGCAAAAGTCGAATTGTT+TGG | - | chr8_1:5975146-5975165 | Msa1174800:intron | 30.0% | |
| TAGCAAAAGTCGAATTGTTT+GGG | - | chr8_1:5975147-5975166 | Msa1174800:intron | 30.0% | |
| !! | GTTTTGATCTTCTAGTCTAA+GGG | + | chr8_1:5975253-5975272 | None:intergenic | 30.0% |
| ! | AGATTTGTTTGATTGAGAAG+AGG | - | chr8_1:5975448-5975467 | Msa1174800:intron | 30.0% |
| !!! | GTTAGTGATCAATTTTGGTT+GGG | + | chr8_1:5975525-5975544 | None:intergenic | 30.0% |
| !! | TGTTAGTGATCAATTTTGGT+TGG | + | chr8_1:5975526-5975545 | None:intergenic | 30.0% |
| CTAACATGTATGTACGAAAA+AGG | - | chr8_1:5975540-5975559 | Msa1174800:intron | 30.0% | |
| ! | AGGTATTGTTGTGTTAAGTT+TGG | - | chr8_1:5975560-5975579 | Msa1174800:intron | 30.0% |
| GAATAGAATATCGTCAATTG+TGG | + | chr8_1:5975785-5975804 | None:intergenic | 30.0% | |
| CAATTGACGATATTCTATTC+CGG | - | chr8_1:5975785-5975804 | Msa1174800:intron | 30.0% | |
| AATTGACGATATTCTATTCC+GGG | - | chr8_1:5975786-5975805 | Msa1174800:intron | 30.0% | |
| ! | GTCAAATACTAACATTTTCC+CGG | + | chr8_1:5975807-5975826 | None:intergenic | 30.0% |
| GGTCACTAGTGAAAAATTAA+AGG | - | chr8_1:5975922-5975941 | Msa1174800:CDS | 30.0% | |
| AGTGTTTGTTTGAGGAATTT+CGG | + | chr8_1:5975951-5975970 | None:intergenic | 30.0% | |
| TTGCATGCTTTGTAATGTTT+CGG | + | chr8_1:5976074-5976093 | None:intergenic | 30.0% | |
| ATTGAATCTTGAATTGTTGC+AGG | - | chr8_1:5976282-5976301 | Msa1174800:CDS | 30.0% | |
| TTGAATCTTGAATTGTTGCA+GGG | - | chr8_1:5976283-5976302 | Msa1174800:CDS | 30.0% | |
| TGATCGGAAGAATTATCTTT+AGG | + | chr8_1:5976374-5976393 | None:intergenic | 30.0% | |
| TAAGTTAAGGTCGAATTGAT+CGG | + | chr8_1:5976390-5976409 | None:intergenic | 30.0% | |
| !! | ATCAGTTTTATCACTGAGAT+TGG | - | chr8_1:5976600-5976619 | Msa1174800:five_prime_UTR | 30.0% |
| !! | TCTTTTGAGTCAGTTCTTGA+AGG | - | chr8_1:5974219-5974238 | Msa1174800:CDS | 35.0% |
| ATTCTACACCTGCTTTCTTT+GGG | - | chr8_1:5974260-5974279 | Msa1174800:intron | 35.0% | |
| TTTGGGAAAATGGAACCTAA+AGG | - | chr8_1:5974277-5974296 | Msa1174800:intron | 35.0% | |
| TGCCTTGTCAATTAATTGGT+TGG | - | chr8_1:5974380-5974399 | Msa1174800:CDS | 35.0% | |
| !!! | CTGATTGTGTTTTTTGGTTG+TGG | - | chr8_1:5974553-5974572 | Msa1174800:intron | 35.0% |
| CCAACATGCAAAATTCAGAT+GGG | - | chr8_1:5974606-5974625 | Msa1174800:CDS | 35.0% | |
| CAACATGCAAAATTCAGATG+GGG | - | chr8_1:5974607-5974626 | Msa1174800:CDS | 35.0% | |
| AACATGCAAAATTCAGATGG+GGG | - | chr8_1:5974608-5974627 | Msa1174800:CDS | 35.0% | |
| TCTAGACATCTAATGACAAG+TGG | + | chr8_1:5974949-5974968 | None:intergenic | 35.0% | |
| TTTATACAAAGTGGCGCAAT+TGG | - | chr8_1:5974973-5974992 | Msa1174800:intron | 35.0% | |
| ! | TAGCTTAGGTCGAAATGTTT+TGG | - | chr8_1:5975007-5975026 | Msa1174800:intron | 35.0% |
| TAAAATCGTGAATCAGTGAG+AGG | - | chr8_1:5975080-5975099 | Msa1174800:intron | 35.0% | |
| CTTCTAGTCTAAGGGAAATT+GGG | + | chr8_1:5975245-5975264 | None:intergenic | 35.0% | |
| TCTTCTAGTCTAAGGGAAAT+TGG | + | chr8_1:5975246-5975265 | None:intergenic | 35.0% | |
| !! | CGTTTTGATCTTCTAGTCTA+AGG | + | chr8_1:5975254-5975273 | None:intergenic | 35.0% |
| TTAGCTAAGGCCTAATTGTT+CGG | - | chr8_1:5975307-5975326 | Msa1174800:intron | 35.0% | |
| GTAGTACTCGAGTTCAATAT+TGG | - | chr8_1:5975330-5975349 | Msa1174800:intron | 35.0% | |
| TTTATTGTGAGGTTGAGATC+TGG | + | chr8_1:5975590-5975609 | None:intergenic | 35.0% | |
| CTAAACTCGTTGAACATCAA+TGG | - | chr8_1:5975640-5975659 | Msa1174800:intron | 35.0% | |
| ! | ATCGTCAATTGTGGAGTTTT+AGG | + | chr8_1:5975776-5975795 | None:intergenic | 35.0% |
| ! | ATTTTCAGAGGCTAATTTGG+TGG | + | chr8_1:5975870-5975889 | None:intergenic | 35.0% |
| ! | TGGATTTTCAGAGGCTAATT+TGG | + | chr8_1:5975873-5975892 | None:intergenic | 35.0% |
| GTGTTTGTTTGAGGAATTTC+GGG | + | chr8_1:5975950-5975969 | None:intergenic | 35.0% | |
| ATTTACCTGAACATTTGGCT+TGG | + | chr8_1:5976000-5976019 | None:intergenic | 35.0% | |
| TTAAGAAGTGAAGCTCTTCT+TGG | + | chr8_1:5976153-5976172 | None:intergenic | 35.0% | |
| GAGAAAAGAAAAGAAAGGTG+TGG | - | chr8_1:5976180-5976199 | Msa1174800:intron | 35.0% | |
| AGAGGACCCTATCAAATTAA+TGG | - | chr8_1:5976314-5976333 | Msa1174800:CDS | 35.0% | |
| AAAAATGAGGGTAGTAGTTC+TGG | - | chr8_1:5976341-5976360 | Msa1174800:CDS | 35.0% | |
| AATCTTCTTAGGGCATAGTT+AGG | + | chr8_1:5976474-5976493 | None:intergenic | 35.0% | |
| TCAATTAGGTCCAATGCTTT+CGG | - | chr8_1:5976561-5976580 | Msa1174800:five_prime_UTR | 35.0% | |
| !!! | TTGTTTTGATCCGAAAGCAT+TGG | + | chr8_1:5976574-5976593 | None:intergenic | 35.0% |
| CTTGTTCGTTGAATCTGCTT+TGG | + | chr8_1:5973991-5974010 | None:intergenic | 40.0% | |
| TTAGCTAATACTGTGTCGGA+TGG | - | chr8_1:5974142-5974161 | Msa1174800:three_prime_UTR | 40.0% | |
| GATTCTACACCTGCTTTCTT+TGG | - | chr8_1:5974259-5974278 | Msa1174800:intron | 40.0% | |
| ! | ACCTGCTTTCTTTGGGAAAA+TGG | - | chr8_1:5974267-5974286 | Msa1174800:intron | 40.0% |
| ! | TCCATTTTCCCAAAGAAAGC+AGG | + | chr8_1:5974271-5974290 | None:intergenic | 40.0% |
| GCCAACATGCAAAATTCAGA+TGG | - | chr8_1:5974605-5974624 | Msa1174800:CDS | 40.0% | |
| ! | CCCATCTGAATTTTGCATGT+TGG | + | chr8_1:5974609-5974628 | None:intergenic | 40.0% |
| ! | AAATTAGGTTAGTCATGGGC+TGG | - | chr8_1:5974871-5974890 | Msa1174800:intron | 40.0% |
| AGACATCTAATGACAAGTGG+TGG | + | chr8_1:5974946-5974965 | None:intergenic | 40.0% | |
| GTAGTACTTGAGTTCGATCT+TGG | - | chr8_1:5975169-5975188 | Msa1174800:intron | 40.0% | |
| TACTTGAGTTCGATCTTGGT+TGG | - | chr8_1:5975173-5975192 | Msa1174800:intron | 40.0% | |
| AGTCTAAGGGAAATTGGGTT+CGG | + | chr8_1:5975240-5975259 | None:intergenic | 40.0% | |
| GAACAATTAGGCCTTAGCTA+AGG | + | chr8_1:5975308-5975327 | None:intergenic | 40.0% | |
| TAGCTAAGGCCTAATTGTTC+GGG | - | chr8_1:5975308-5975327 | Msa1174800:intron | 40.0% | |
| !!! | GTGATCAATTTTGGTTGGGA+AGG | + | chr8_1:5975521-5975540 | None:intergenic | 40.0% |
| ACTCGTTGAACATCAATGGT+AGG | - | chr8_1:5975644-5975663 | Msa1174800:intron | 40.0% | |
| ATGATCTCAGTTGCATTCGT+AGG | + | chr8_1:5975839-5975858 | None:intergenic | 40.0% | |
| TACGAATGCAACTGAGATCA+TGG | - | chr8_1:5975838-5975857 | Msa1174800:intron | 40.0% | |
| ! | TCTAAGGCAGTGTTTGTTTG+AGG | + | chr8_1:5975959-5975978 | None:intergenic | 40.0% |
| !! | TCCTTGTTCGGTTGTTTCTA+AGG | + | chr8_1:5975975-5975994 | None:intergenic | 40.0% |
| !! | TTTGGCTTGGTTTCCTTGTT+CGG | + | chr8_1:5975987-5976006 | None:intergenic | 40.0% |
| ATGCCCTAAGAAGATTGTTG+TGG | - | chr8_1:5976478-5976497 | Msa1174800:five_prime_UTR | 40.0% | |
| AGGCCACAACAATCTTCTTA+GGG | + | chr8_1:5976484-5976503 | None:intergenic | 40.0% | |
| AAGGCCACAACAATCTTCTT+AGG | + | chr8_1:5976485-5976504 | None:intergenic | 40.0% | |
| GTCTGAACTATGAGACCATG+TGG | + | chr8_1:5973969-5973988 | None:intergenic | 45.0% | |
| TGAATCTCTTCCTCAGCTTG+TGG | - | chr8_1:5974655-5974674 | Msa1174800:CDS | 45.0% | |
| ! | CAAGGATTTTCCACAAGCTG+AGG | + | chr8_1:5974668-5974687 | None:intergenic | 45.0% |
| ! | TGGTTAATGCGCGTTAGCTT+AGG | - | chr8_1:5974993-5975012 | Msa1174800:intron | 45.0% |
| CGAGTACTACCCGAACAATT+AGG | + | chr8_1:5975320-5975339 | None:intergenic | 45.0% | |
| GTCGAGACTGAATTTCACTG+TGG | - | chr8_1:5975406-5975425 | Msa1174800:intron | 45.0% | |
| TGCAACTGAGATCATGGAGT+TGG | - | chr8_1:5975844-5975863 | Msa1174800:intron | 45.0% | |
| ! | TTCAGCGCTTGGATTTTCAG+AGG | + | chr8_1:5975882-5975901 | None:intergenic | 45.0% |
| GCCTTAGAAACAACCGAACA+AGG | - | chr8_1:5975971-5975990 | Msa1174800:intron | 45.0% | |
| GGAAACCAAGCCAAATGTTC+AGG | - | chr8_1:5975992-5976011 | Msa1174800:intron | 45.0% | |
| !!! | ATATGAAATTTTAATTTTTT+TGG | - | chr8_1:5974349-5974368 | Msa1174800:intron | 5.0% |
| CTAATACTGTGTCGGATGGC+CGG | - | chr8_1:5974146-5974165 | Msa1174800:exon | 50.0% | |
| !! | TTGGTTCTGCGCCTTAGCTA+AGG | - | chr8_1:5975294-5975313 | Msa1174800:intron | 50.0% |
| TGTTGCAGGGTCATTGCTAG+AGG | - | chr8_1:5976296-5976315 | Msa1174800:CDS | 50.0% | |
| GAACTTCTCCGGTGCCTTAC+CGG | + | chr8_1:5974179-5974198 | None:intergenic | 55.0% | |
| AGAAAACCCCCCAAGTGCAC+CGG | - | chr8_1:5975901-5975920 | Msa1174800:CDS | 55.0% | |
| ACTAGTGACCGGTGCACTTG+GGG | + | chr8_1:5975912-5975931 | None:intergenic | 55.0% | |
| CACTAGTGACCGGTGCACTT+GGG | + | chr8_1:5975913-5975932 | None:intergenic | 55.0% | |
| TCACTAGTGACCGGTGCACT+TGG | + | chr8_1:5975914-5975933 | None:intergenic | 55.0% | |
| GTGCCTTACCGGTGAGTCTC+CGG | + | chr8_1:5974168-5974187 | None:intergenic | 60.0% | |
| GAGACTCACCGGTAAGGCAC+CGG | - | chr8_1:5974168-5974187 | Msa1174800:CDS | 60.0% | |
| ! | GGGGGGTTTTCTTCAGCGCT+TGG | + | chr8_1:5975893-5975912 | None:intergenic | 60.0% |
| TAGTGACCGGTGCACTTGGG+GGG | + | chr8_1:5975910-5975929 | None:intergenic | 60.0% | |
| CTAGTGACCGGTGCACTTGG+GGG | + | chr8_1:5975911-5975930 | None:intergenic | 60.0% | |
| TCGGATGGCCGGAGACTCAC+CGG | - | chr8_1:5974157-5974176 | Msa1174800:exon | 65.0% | |
| TGGCCGGAGACTCACCGGTA+AGG | - | chr8_1:5974162-5974181 | Msa1174800:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 5973860 | 5976714 | 5973860 | ID=Msa1174800;Name=Msa1174800 |
| chr8_1 | mRNA | 5973860 | 5976714 | 5973860 | ID=Msa1174800-mRNA-1;Parent=Msa1174800;Name=Msa1174800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=273|1|1|1|1|1|5|302|235 |
| chr8_1 | exon | 5973860 | 5974270 | 5973860 | ID=Msa1174800-mRNA-1:exon:2024;Parent=Msa1174800-mRNA-1 |
| chr8_1 | exon | 5974378 | 5974435 | 5974378 | ID=Msa1174800-mRNA-1:exon:2023;Parent=Msa1174800-mRNA-1 |
| chr8_1 | exon | 5974561 | 5974811 | 5974561 | ID=Msa1174800-mRNA-1:exon:2022;Parent=Msa1174800-mRNA-1 |
| chr8_1 | exon | 5975866 | 5975989 | 5975866 | ID=Msa1174800-mRNA-1:exon:2021;Parent=Msa1174800-mRNA-1 |
| chr8_1 | exon | 5976276 | 5976714 | 5976276 | ID=Msa1174800-mRNA-1:exon:2020;Parent=Msa1174800-mRNA-1 |
| chr8_1 | five_prime_UTR | 5976442 | 5976714 | 5976442 | ID=Msa1174800-mRNA-1:five_prime_utr;Parent=Msa1174800-mRNA-1 |
| chr8_1 | CDS | 5976276 | 5976441 | 5976276 | ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1 |
| chr8_1 | CDS | 5975866 | 5975989 | 5975866 | ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1 |
| chr8_1 | CDS | 5974561 | 5974811 | 5974561 | ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1 |
| chr8_1 | CDS | 5974378 | 5974435 | 5974378 | ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1 |
| chr8_1 | CDS | 5974162 | 5974270 | 5974162 | ID=Msa1174800-mRNA-1:cds;Parent=Msa1174800-mRNA-1 |
| chr8_1 | three_prime_UTR | 5973860 | 5974161 | 5973860 | ID=Msa1174800-mRNA-1:three_prime_utr;Parent=Msa1174800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
